Psyllid ID: psy1913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MGSNNKKKNDGSNNKKKNDGSNPQSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccEEEEEEEEEEcccccccccccEEccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEccccEEEccccccccHHHHHHHHHccccEEcccccccccccccccccEEEEEccccccccccccccccccEEEEcccccccHHHHHHHHHcccEEEccEEcccccEEEcHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHccHHHHHHHHHHHHHHHHHccccEcccEEEEcEccEcHHHHHHHHHHHHccHHHHcccHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEEEccEEEEccccccccHHHHHHHHHccccccccccccEccccHHHccccEEEEccccccEccccHHHccccEEEccccccEcHHHHHHHHHcccEEEcHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgsnnkkkndgsnnkkkndgsnpqsghkiperlkdvpdkenpgffeSVEYYFHRAVQNlipefdvsirarkftdedIALRRNGIIMLMQNYSSLleiqfpfrrdsgeyeliqcyrchhcthksptkggiryaldvNPDEVKALAALMTYKnscsnvpfggakggiridpskynnreLERITRKFALELIKknyvgpgidvpapdyntsareMSWFYDAYAKTlgstninalgmvtgkplflggirgresatgrgvFTAAEILVNNEeymceiglepcmenkTYIVQGFGNVGFHAARYFRRGRAKCLAIVehdtaivpdkgteinykdlhtykitkgtikgypgtksaptdimfdkvdiLVPAAIEKVIRKSNADKVQAKIIVEaangpltpAAHAMLLKKNVLiipdifanaggvtVSYFEWLKNishsslgrmsfgydkEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEdrisnatekdIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Flexible Loop (DISEMBL)
mgsnnkkkndgsnnkkkndgsnpqsghkiperlkdvpdKENPGFFESVEYYFHRAVQNLipefdvsiraRKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSnvpfggakggiridpskynnreLERITRKFALELIKknyvgpgidvpapdYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVehdtaivpdkgteinykdlhtykitkgtikgypgtksaptdIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSidtslsdtfnKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Low Complexity Region (SEG)
MgsnnkkkndgsnnkkkndgsnPQSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEisdlllssidtslsdtFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Disordered region (IsUnstruct)
******************************************GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQ*********************************LEY*****NKLDLRNAAYCSALFKIFKTYE******
Disordered Region (DISOPRED)
**************************************KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFT**DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE*
Disordered Region (DISEMBL)
**************************HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Disordered Region (DISPRO)
*********************NPQSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSNNKKKNDGSNNKKKNDGSNPQSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
P54385	562	Glutamate dehydrogenase,	yes	N/A	0.942	0.896	0.509	1e-152
P00367	558	Glutamate dehydrogenase 1	yes	N/A	0.949	0.910	0.482	1e-138
Q64HZ9	555	Glutamate dehydrogenase 2	N/A	N/A	0.919	0.886	0.489	1e-137
Q64I00	558	Glutamate dehydrogenase 2	N/A	N/A	0.925	0.887	0.488	1e-137
P49448	558	Glutamate dehydrogenase 2	yes	N/A	0.925	0.887	0.488	1e-137
P82264	504	Glutamate dehydrogenase,	N/A	N/A	0.927	0.984	0.485	1e-136
Q64HZ8	558	Glutamate dehydrogenase 2	yes	N/A	0.925	0.887	0.484	1e-136
P10860	558	Glutamate dehydrogenase 1	yes	N/A	0.919	0.881	0.481	1e-136
P26443	558	Glutamate dehydrogenase 1	yes	N/A	0.919	0.881	0.481	1e-136
Q64I01	558	Glutamate dehydrogenase 2	N/A	N/A	0.925	0.887	0.484	1e-135

>sp|P54385|DHE3_DROME Glutamate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Gdh PE=1 SV=2

 Score =  538 bits (1386), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/524 (50%), Positives = 354/524 (67%), Gaps = 20/524 (3%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
           H+IP+RLKDVP  ++P FF+ VEY+FHR  Q +  E  V     K T ++   +  GI+M
Sbjct: 40  HQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQ-IAEESLVDDMKGKLTRDEKKQKVKGILM 98

Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           LMQ    ++EI FP RRD+G YE+I  YR  H THK+PTKGGIR++LDV+ DEVKAL+AL
Sbjct: 99  LMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRDEVKALSAL 158

Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K +C +VPFGGAK G++I+P +Y+  ELE+ITR+F LEL KK ++GPG+DVPAPD  
Sbjct: 159 MTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMG 218

Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N  
Sbjct: 219 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEA 278

Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
            YM +IG  P    KT+IVQGFGNVG H  RY  R  A C+ ++EHD  +   +G  I+ 
Sbjct: 279 NYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEG--IDP 336

Query: 327 KDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
           K L  YK   GTI GY   K     ++MF+K DI +PAA+EKVI   NA+++QAKII EA
Sbjct: 337 KLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEA 396

Query: 386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISD 445
           ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E + 
Sbjct: 397 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 456

Query: 446 LLLSSIDTSLSDTFNK----------------KIRIQKSAMYEDRISNATEKDIVQSSLT 489
            LL+S+  S+    N                 +I +  S  ++ RIS A+EKDIV S L 
Sbjct: 457 HLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLD 516

Query: 490 HSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           ++M+R+ R I++ A K +  LDLR AAY +++ KIF TY +AGL
Sbjct: 517 YTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEKIFTTYRDAGL 560

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 3

>sp|P00367|DHE3_HUMAN Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens GN=GLUD1 PE=1 SV=2

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 344/518 (66%), Gaps = 10/518 (1%)

Query: 23  PQSGHKIPERL---KDVPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIA 78
           PQ G  +  R    + V D+E+ P FF+ VE +F R    +  +    +R R+ ++E   
Sbjct: 41  PQPGLALAARRHYSEAVADREDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKR 99

Query: 79  LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD 138
            R  GI+ +++  + +L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ D
Sbjct: 100 NRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVD 159

Query: 139 EVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198
           EVKALA+LMTYK +  +VPFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGI
Sbjct: 160 EVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGI 219

Query: 199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA 258
           DVPAPD +T  REMSW  D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF  
Sbjct: 220 DVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHG 279

Query: 259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVP 318
            E  +N   YM  +G+ P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I  
Sbjct: 280 IENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWN 339

Query: 319 DKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQ 378
             G  I+ K+L  +K+  G+I G+P  K     I+    DIL+PAA EK + KSNA +V+
Sbjct: 340 PDG--IDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVK 397

Query: 379 AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFG 438
           AKII E ANGP TP A  + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F 
Sbjct: 398 AKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFK 457

Query: 439 YDKEISDLLLSSIDTSLSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRA 495
           Y+++ +  LL S+  SL   F K    I I  +A ++DRIS A+EKDIV S L ++M+R+
Sbjct: 458 YERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERS 517

Query: 496 GRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
            R I+  A K +  LDLR AAY +A+ K+FK Y EAG+
Sbjct: 518 ARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKVYNEAGV 555

May be involved in learning and memory reactions by increasing the turnover of the excitatory neurotransmitter glutamate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q64HZ9|DHE4_HYLLA Glutamate dehydrogenase 2, mitochondrial OS=Hylobates lar GN=GLUD2 PE=3 SV=1

 Score =  489 bits (1260), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/498 (48%), Positives = 335/498 (67%), Gaps = 6/498 (1%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           K++P FF+ VE +F R    +  +    +R R+ ++E    R  GI+ +++  + +L + 
Sbjct: 58  KDDPNFFKMVEGFFDRGASIVEDKLVKDLRTRE-SEEQKRNRVRGILRIIKPCNHVLSLS 116

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 117 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSADVSVDEVKALASLMTYKCAVVDVPF 176

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPGIDVPAPD NT  REMSW  D 
Sbjct: 177 GGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSWIADT 236

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P  
Sbjct: 237 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 296

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+  G+
Sbjct: 297 GDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKLQHGS 354

Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 355 ILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 414

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
           L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  SL   
Sbjct: 415 LERNIMVIPDLYVNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 474

Query: 459 FNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I I  +A ++D IS A+EKDIV S+L ++M+R+ R I+  A K +  LDLR A
Sbjct: 475 FGKHGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMRTAMKYNLGLDLRTA 534

Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+FK Y EAG+
Sbjct: 535 AYVNAIEKVFKVYSEAGV 552

Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Hylobates lar (taxid: 9580)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q64I00|DHE4_PONPY Glutamate dehydrogenase 2, mitochondrial OS=Pongo pygmaeus GN=GLUD2 PE=3 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/502 (48%), Positives = 336/502 (66%), Gaps = 7/502 (1%)

Query: 36  VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
           V D+E+ P FF+ VE +F R    +  +    +R ++ ++E    R  GI+ +++  + +
Sbjct: 57  VADREDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQE-SEEQKRNRVRGILRIIKPCNHV 115

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct: 116 LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 175

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
           +VPFGGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPGIDVPAPD NT  REMSW
Sbjct: 176 DVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSW 235

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct: 236 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSNVGM 295

Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
            P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +++
Sbjct: 296 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--IDPKELEDFRL 353

Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 354 QHGSILGFPKAKPYEGSILEADCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEA 413

Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTS 454
             + L++N+L+IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  S
Sbjct: 414 DKIFLERNILVIPDVYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQES 473

Query: 455 LSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
           L   F K    I I  +A + D IS A+EKDIV S+L ++M+R+ R I+  A K +  LD
Sbjct: 474 LERKFGKHGGTIPIVPTAEFRDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLD 533

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR AAY +A+ K+FK Y EAG+
Sbjct: 534 LRTAAYVNAIEKVFKVYSEAGV 555

Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P49448|DHE4_HUMAN Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/502 (48%), Positives = 337/502 (67%), Gaps = 7/502 (1%)

Query: 36  VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
           V D+E+ P FF+ VE +F R    +  +    +R ++ ++E    R  GI+ +++  + +
Sbjct: 57  VADREDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQE-SEEQKRNRVRGILRIIKPCNHV 115

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct: 116 LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 175

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
           +VPFGGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPG+DVPAPD NT  REMSW
Sbjct: 176 DVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSW 235

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct: 236 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 295

Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
            P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+
Sbjct: 296 TPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKL 353

Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 354 QHGSILGFPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEA 413

Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTS 454
             + L++N+L+IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  S
Sbjct: 414 DKIFLERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLLSVQES 473

Query: 455 LSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
           L   F K    I I  +A ++D IS A+EKDIV S+L ++M+R+ R I+  A K +  LD
Sbjct: 474 LERKFGKHGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLD 533

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR AAY +A+ K+FK Y EAG+
Sbjct: 534 LRTAAYVNAIEKVFKVYSEAGV 555

Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P82264|DHE3_CHAAC Glutamate dehydrogenase, mitochondrial OS=Chaenocephalus aceratus GN=glud1 PE=1 SV=1

 Score =  487 bits (1253), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/503 (48%), Positives = 339/503 (67%), Gaps = 7/503 (1%)

Query: 35  DVPDK-ENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSS 93
           D  DK ++P FF  VE +F R    +  +    +R ++ T E    R  GI+ +++  + 
Sbjct: 2   DAADKPDDPNFFRMVEGFFDRGASIVEDKLVEDLRTKE-TPEQKKGRVAGILRIIKPCNH 60

Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L + FP +RD+GE+E+I+ YR  H  H++P KGGIRY++DV+ DEVKALA+LMTYK + 
Sbjct: 61  VLSLSFPIKRDNGEWEVIEGYRAQHSQHRTPCKGGIRYSMDVSVDEVKALASLMTYKCAV 120

Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            +VPFGGAK G+RI+   Y++ ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMS
Sbjct: 121 VDVPFGGAKAGVRINTKNYSDNELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGEREMS 180

Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D YA T+  T+INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G
Sbjct: 181 WIADTYANTIAHTDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFMNEASYMSMVG 240

Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           L P +++KT+++QGFGNVG H+ RY  R  AKC+ I E D AI    G  I+ K L  YK
Sbjct: 241 LTPGVQDKTFVIQGFGNVGLHSMRYLHRFGAKCVGIGEIDGAIYNADG--IDPKALEEYK 298

Query: 334 ITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPA 393
           +  GTI G+PG K     I+    DIL+PAA EK + ++NA +++AKII E ANGP TP 
Sbjct: 299 LQNGTIVGFPGAKPYEGSILEADCDILIPAAGEKQLTRNNARRIKAKIIAEGANGPTTPD 358

Query: 394 AHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDT 453
           A  + L+ NV++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  
Sbjct: 359 ADKIFLENNVMVIPDMYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQE 418

Query: 454 SLSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKL 510
           SL   F K+   I +  +A ++ R++ A+EKDIV S L ++M+R+ R I+  A K +  L
Sbjct: 419 SLERKFGKQGGPIPVVPTADFQARVAGASEKDIVHSGLAYTMERSARQIMRTASKHNLGL 478

Query: 511 DLRNAAYCSALFKIFKTYEEAGL 533
           D+R AAY +A+ K+FK Y EAGL
Sbjct: 479 DIRTAAYVNAIEKVFKVYNEAGL 501

Chaenocephalus aceratus (taxid: 36190)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q64HZ8|DHE4_PANTR Glutamate dehydrogenase 2, mitochondrial OS=Pan troglodytes GN=GLUD2 PE=3 SV=1

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/502 (48%), Positives = 337/502 (67%), Gaps = 7/502 (1%)

Query: 36  VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
           V D+E+ P FF+ VE +F R    +  +    +R ++ ++E    R  GI+ +++  + +
Sbjct: 57  VADREDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQE-SEEQKRNRVRGILRIIKPCNHV 115

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct: 116 LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 175

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
           +VPFGGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPG+DVPAPD NT  REMSW
Sbjct: 176 DVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSW 235

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct: 236 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 295

Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
            P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +++
Sbjct: 296 TPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFRL 353

Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
             G++ G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 354 QHGSLLGFPKAKPYEGSILEIDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEA 413

Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTS 454
             + L++N+L+IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  S
Sbjct: 414 DKIFLERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQES 473

Query: 455 LSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
           L   F K    I I  +A ++D IS A+EKDIV S+L ++M+R+ R I+  A K +  LD
Sbjct: 474 LERKFGKHGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLD 533

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR AAY +A+ K+FK Y EAG+
Sbjct: 534 LRTAAYVNAIEKVFKVYSEAGV 555

Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P10860|DHE3_RAT Glutamate dehydrogenase 1, mitochondrial OS=Rattus norvegicus GN=Glud1 PE=1 SV=2

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/498 (48%), Positives = 335/498 (67%), Gaps = 6/498 (1%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           +++P FF+ VE +F R    +  +    ++ R+  +E    R  GI+ +++  + +L + 
Sbjct: 61  EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-NEEQKRNRVRGILRIIKPCNHVLSLS 119

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 120 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 179

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  D 
Sbjct: 180 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADT 239

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P +
Sbjct: 240 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGL 299

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  G+
Sbjct: 300 GDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDG--IDPKELEDFKLQHGS 357

Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 358 ILGFPKAKVYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 417

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
           L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  SL   
Sbjct: 418 LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 477

Query: 459 FNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I +  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR A
Sbjct: 478 FGKHGGTIPVVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 537

Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+FK Y EAG+
Sbjct: 538 AYVNAIEKVFKVYNEAGV 555

May be involved in learning and memory reactions by increasing the turnover of the excitatory neurotransmitter glutamate.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|P26443|DHE3_MOUSE Glutamate dehydrogenase 1, mitochondrial OS=Mus musculus GN=Glud1 PE=1 SV=1

 Score =  484 bits (1246), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/498 (48%), Positives = 335/498 (67%), Gaps = 6/498 (1%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           +++P FF+ VE +F R    +  +    ++ R+ ++E    R  GI+ +++  + +L + 
Sbjct: 61  EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-SEEQKRNRVRGILRIIKPCNHVLSLS 119

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 120 FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 179

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  D 
Sbjct: 180 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADT 239

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P  
Sbjct: 240 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 299

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  G+
Sbjct: 300 GDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDG--IDPKELEDFKLQHGS 357

Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 358 ILGFPKAKVYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 417

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
           L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  SL   
Sbjct: 418 LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 477

Query: 459 FNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I +  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR A
Sbjct: 478 FGKHGGTIPVVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 537

Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+FK Y EAG+
Sbjct: 538 AYVNAIEKVFKVYNEAGV 555

May be involved in learning and memory reactions by increasing the turnover of the excitatory neurotransmitter glutamate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

>sp|Q64I01|DHE4_GORGO Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla GN=GLUD2 PE=3 SV=1

 Score =  483 bits (1243), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/502 (48%), Positives = 336/502 (66%), Gaps = 7/502 (1%)

Query: 36  VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
           V D+E+ P FF+ VE +F R    +  +    +R ++ ++E    R  GI+ +++  + +
Sbjct: 57  VADREDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQE-SEEQKRNRVRGILRIIKPCNHV 115

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct: 116 LSLCFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 175

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
           +VPFGGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPG+DVPAPD NT  REMSW
Sbjct: 176 DVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSW 235

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct: 236 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 295

Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
            P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +++
Sbjct: 296 TPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFRL 353

Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 354 QHGSILGFPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEA 413

Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTS 454
             +  ++N+L+IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++ +  LL S+  S
Sbjct: 414 DRIFQERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQES 473

Query: 455 LSDTFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
           L   F K    I I  +A ++D IS A+EKDIV S+L ++M+R+ R I+  A K +  LD
Sbjct: 474 LERKFGKHGGTIPIVPTADFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLD 533

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR AAY +A+ K+FK Y EAG+
Sbjct: 534 LRTAAYVNAIEKVFKVYSEAGV 555

Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
347971756	554	AGAP004362-PB [Anopheles gambiae str. PE	0.942	0.909	0.534	1e-155
389614579	554	glutamate dehydrogenase [Papilio polytes	0.977	0.944	0.516	1e-155
347971760	554	AGAP004362-PD [Anopheles gambiae str. PE	0.942	0.909	0.534	1e-155
389608645	534	glutamate dehydrogenase [Papilio xuthus]	0.945	0.947	0.530	1e-155
307195623	556	Glutamate dehydrogenase, mitochondrial [	0.942	0.906	0.530	1e-154
347971764	570	AGAP004362-PF [Anopheles gambiae str. PE	0.942	0.884	0.523	1e-153
347971758	570	AGAP004362-PA [Anopheles gambiae str. PE	0.942	0.884	0.521	1e-153
383854474	553	PREDICTED: glutamate dehydrogenase, mito	0.942	0.911	0.526	1e-153
170058273	556	glutamate dehydrogenase [Culex quinquefa	0.953	0.917	0.529	1e-153
66523390	553	PREDICTED: glutamate dehydrogenase, mito	0.942	0.911	0.530	1e-153

>gi|347971756|ref|XP_003436792.1| AGAP004362-PB [Anopheles gambiae str. PEST] gi|333469015|gb|EGK97150.1| AGAP004362-PB [Anopheles gambiae str. PEST]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/511 (53%), Positives = 358/511 (70%), Gaps = 7/511 (1%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
           H+IPERLKDV    NP FF+ VEY+FHRA Q    +    ++ R   DE    +  GI+M
Sbjct: 45  HQIPERLKDVSTAANPRFFDMVEYFFHRACQICEDKLVEDMKGRASMDEK-KKKVKGILM 103

Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           LMQ    ++EI FP RRDSG+YE+I  YR  HCTH++PTKGGIR++LDV+ DEVKAL+AL
Sbjct: 104 LMQPCDHIIEIAFPLRRDSGDYEMITGYRAQHCTHRTPTKGGIRFSLDVSRDEVKALSAL 163

Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K +C +VPFGGAK G++IDP KY+  ELE+ITR+FALEL KK ++GPGIDVPAPD  
Sbjct: 164 MTFKCACVDVPFGGAKAGVKIDPRKYSEHELEKITRRFALELSKKGFIGPGIDVPAPDMG 223

Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   +  +   
Sbjct: 224 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLDNFIKEA 283

Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
            YM +IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I   +G  I+ 
Sbjct: 284 NYMAQIGTTPGWGGKTFIVQGFGNVGLHSCRYLTRAGATCIGVIEHDGSIFNPQG--IDP 341

Query: 327 KDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
           K L  YK  KGTI G+PG +     ++M+++ DI +PAA+EKVI   NA K+ AKII EA
Sbjct: 342 KALEDYKNEKGTIVGFPGAQPYEGENLMYEQCDIFIPAAVEKVITAENAGKINAKIIAEA 401

Query: 386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISD 445
           ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E + 
Sbjct: 402 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 461

Query: 446 LLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEY 502
            LL S+  SL   F     KI +  S  ++ RIS A+EKDIV S L ++M+R+ R I++ 
Sbjct: 462 HLLESVQASLERRFGNVGGKIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIMKT 521

Query: 503 AEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           A K +  LDLR+AAY +++ KIF+TY +AGL
Sbjct: 522 AMKYNLGLDLRSAAYVNSIEKIFQTYRDAGL 552

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614579|dbj|BAM20330.1| glutamate dehydrogenase [Papilio polytes]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 277/536 (51%), Positives = 371/536 (69%), Gaps = 13/536 (2%)

Query: 8   KNDGSNNKKK------NDGSNPQSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIP 61
           +N+G NN  +      N      + H+IP+RLKDVP   NP FF+ VEY+FHRA Q +  
Sbjct: 20  QNEGVNNMFRIAPAAVNVCCRTYASHEIPDRLKDVPTSANPRFFDMVEYFFHRACQVIED 79

Query: 62  EFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTH 121
           +    +++R  T+E    +  GI+ LMQ    +LEIQFP +RDSG+YE+I  YR  H +H
Sbjct: 80  KLVEDVKSRVSTEEK-KKKVAGILKLMQPCDHILEIQFPLKRDSGDYEMILGYRAQHSSH 138

Query: 122 KSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERIT 181
           ++PTKGGIR++ DV  DEVKAL+ALMT+K +C +VPFGGAK GI+I+P +Y+  ELE+IT
Sbjct: 139 RTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKIT 198

Query: 182 RKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
           R+FALEL KK ++GPG+DVPAPD  T  REMSW  D YAKT+G  +INA   VTGKP+  
Sbjct: 199 RRFALELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGYQDINAHACVTGKPINQ 258

Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GGI GR SATGRGVF   E  +N   YM  IG  P    KT+IVQGFGNVG H  RY  R
Sbjct: 259 GGIHGRVSATGRGVFHGLENFINEANYMSMIGTTPGWGGKTFIVQGFGNVGLHTCRYLVR 318

Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDIL 360
             A C+ ++EHD AI   +G  I+ K L  Y+I KGTI G+PG ++    +++++K DIL
Sbjct: 319 AGATCIGVIEHDGAIHNPEG--IDPKALEDYRIEKGTIVGFPGAQAYEGENMLYEKCDIL 376

Query: 361 VPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSY 420
           VPAA+E+VI K NA K+QAKII EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+
Sbjct: 377 VPAAVEQVIHKENAHKIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSF 436

Query: 421 FEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISN 477
           FEWLKN++H S GR++F Y+++ +  LL S+  SL   F +   +I +  S  ++ RIS 
Sbjct: 437 FEWLKNLNHVSYGRLTFKYERDSNHHLLESVQESLERRFGRVGGRIPVTPSEAFQKRISG 496

Query: 478 ATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           A+EKDIV S L ++M+R+ R I++ A K +  LDLR AAY +++ KIF TY +AGL
Sbjct: 497 ASEKDIVHSGLDYTMERSARAIMKTAMKFNLGLDLRTAAYANSIEKIFTTYADAGL 552

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971760|ref|XP_003436793.1| AGAP004362-PD [Anopheles gambiae str. PEST] gi|347971762|ref|XP_003436794.1| AGAP004362-PE [Anopheles gambiae str. PEST] gi|333469017|gb|EGK97152.1| AGAP004362-PD [Anopheles gambiae str. PEST] gi|333469018|gb|EGK97153.1| AGAP004362-PE [Anopheles gambiae str. PEST]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/511 (53%), Positives = 358/511 (70%), Gaps = 7/511 (1%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
           H+IPERLKDV    NP FF+ VEY+FHRA Q    +    ++ R   DE    +  GI+M
Sbjct: 45  HQIPERLKDVSTAANPRFFDMVEYFFHRACQICEDKLVEDMKGRASMDEK-KKKVKGILM 103

Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           LMQ    ++EI FP RRDSG+YE+I  YR  HCTH++PTKGGIR++LDV+ DEVKAL+AL
Sbjct: 104 LMQPCDHIIEIAFPLRRDSGDYEMITGYRAQHCTHRTPTKGGIRFSLDVSRDEVKALSAL 163

Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K +C +VPFGGAK G++IDP KY+  ELE+ITR+FALEL KK ++GPGIDVPAPD  
Sbjct: 164 MTFKCACVDVPFGGAKAGVKIDPRKYSEHELEKITRRFALELSKKGFIGPGIDVPAPDMG 223

Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   +  +   
Sbjct: 224 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLDNFIKEA 283

Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
            YM +IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I   +G  I+ 
Sbjct: 284 NYMAQIGTTPGWGGKTFIVQGFGNVGLHSCRYLTRAGATCIGVIEHDGSIFNPQG--IDP 341

Query: 327 KDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
           K L  YK  KGTI G+PG +     ++M+++ DI +PAA+EKVI   NA K+ AKII EA
Sbjct: 342 KALEDYKNEKGTIVGFPGAQPYEGENLMYEQCDIFIPAAVEKVITAENAGKINAKIIAEA 401

Query: 386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISD 445
           ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E + 
Sbjct: 402 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 461

Query: 446 LLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEY 502
            LL S+  SL   F     KI I+ S  ++ RIS A+EKDIV S L ++M+R+ R I+  
Sbjct: 462 HLLESVQRSLEARFGTVGGKIPIEASEAFKKRISGASEKDIVHSGLDYTMERSARAIMIT 521

Query: 503 AEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           A + +  LDLR+AAY +++ KIF+TY +AGL
Sbjct: 522 AMRYNLGLDLRSAAYINSIEKIFQTYRDAGL 552

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608645|dbj|BAM17932.1| glutamate dehydrogenase [Papilio xuthus]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/513 (53%), Positives = 363/513 (70%), Gaps = 7/513 (1%)

Query: 25  SGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGI 84
           + H+IP+RLKDVP   NP FF+ VEY+FHRA Q +  +    +++R  T+E    +  GI
Sbjct: 23  ASHEIPDRLKDVPTSANPRFFDMVEYFFHRACQVIEDKLVEDVKSRVSTEEK-KKKVAGI 81

Query: 85  IMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALA 144
           + LMQ    +LEIQFP +RDSG+YE+I  YR  H +H++PTKGGIR++ DV  DEVKAL+
Sbjct: 82  LKLMQPCDHILEIQFPLKRDSGDYEMILGYRAQHSSHRTPTKGGIRFSTDVTRDEVKALS 141

Query: 145 ALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPD 204
           ALMT+K +C +VPFGGAK GI+I+P +Y+  ELE+ITR+FALEL KK ++GPG+DVPAPD
Sbjct: 142 ALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRRFALELAKKGFIGPGVDVPAPD 201

Query: 205 YNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN 264
             T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N
Sbjct: 202 MGTGEREMSWIADTYAKTIGYQDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFIN 261

Query: 265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI 324
              YM  IG  P    KT+IVQGFGNVG H  RY  R  A C+ ++EHD AI   +G  I
Sbjct: 262 EANYMSMIGTTPGWGGKTFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGAIHNPEG--I 319

Query: 325 NYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIV 383
           + K L  Y+I KGTI G+PG ++    +++++K DILVPAA+E+VI K NA K+QAKII 
Sbjct: 320 DPKALEDYRIEKGTIVGFPGAQAYEGENMLYEKCDILVPAAVEQVIHKENAHKIQAKIIA 379

Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEI 443
           EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y+++ 
Sbjct: 380 EAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERDS 439

Query: 444 SDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDIL 500
           +  LL S+  SL   F +   +I +  S  ++ RIS A+EKDIV S L ++M+R+ R I+
Sbjct: 440 NHHLLESVQESLERRFGRVGGRIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIM 499

Query: 501 EYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           + A K +  LDLR AAY +++ KIF TY +AGL
Sbjct: 500 KTAMKFNLGLDLRTAAYANSIEKIFTTYADAGL 532

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195623|gb|EFN77465.1| Glutamate dehydrogenase, mitochondrial [Harpegnathos saltator]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/513 (53%), Positives = 359/513 (69%), Gaps = 9/513 (1%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEF--DVSIRARKFTDEDIALRRNGI 84
           H++PERLKDVP   NP FF+ VEY+FHRA Q +  +   DV  R+R  + E+   +  GI
Sbjct: 45  HQVPERLKDVPTAPNPKFFDMVEYFFHRACQIVEEKLVEDVGKRSR-LSVEERKKKVKGI 103

Query: 85  IMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALA 144
           +MLM+    +LE  FP RRDSG+YE+I  YR  H TH++P KGGIR+++DV+ DEVKAL+
Sbjct: 104 LMLMEPCDHILETTFPLRRDSGDYEMITGYRAQHSTHRTPCKGGIRFSMDVSRDEVKALS 163

Query: 145 ALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPD 204
           ALMT+K +C +VPFGGAK GI+I+P  Y+  ELE+ITR+F LEL KK ++GPG+DVPAPD
Sbjct: 164 ALMTFKCACVDVPFGGAKAGIKINPKNYSEHELEKITRRFTLELAKKGFIGPGVDVPAPD 223

Query: 205 YNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN 264
             T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N
Sbjct: 224 MGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIN 283

Query: 265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI 324
              YM  IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I   +G  I
Sbjct: 284 EANYMSMIGTTPGWGGKTFIVQGFGNVGLHSMRYLHRAGAACIGVIEHDGSIYNSEG--I 341

Query: 325 NYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIV 383
           + K+L  Y+I  GTI G+PG K     ++M++  DI +PAAIEKVI K NA ++QAKII 
Sbjct: 342 DPKELEEYRIENGTIVGFPGAKPYEGENLMYEPCDIFIPAAIEKVITKENAGRIQAKIIA 401

Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEI 443
           EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E 
Sbjct: 402 EAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERES 461

Query: 444 SDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDIL 500
           +  LL S+  SL   F +   +I +  S  ++ RIS A+EKDIV S L ++M+R+ R I+
Sbjct: 462 NYHLLESVQESLERRFGRVGGRIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIM 521

Query: 501 EYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           + A K +  LDLR AAY +++ KIF TY EAGL
Sbjct: 522 KTAMKFNLGLDLRTAAYANSIEKIFTTYSEAGL 554

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971764|ref|XP_003436795.1| AGAP004362-PF [Anopheles gambiae str. PEST] gi|333469019|gb|EGK97154.1| AGAP004362-PF [Anopheles gambiae str. PEST]

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/527 (52%), Positives = 361/527 (68%), Gaps = 23/527 (4%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
           H+IPERLKDV    NP FF+ VEY+FHRA Q    +    ++ R   DE    +  GI+M
Sbjct: 45  HQIPERLKDVSTAANPRFFDMVEYFFHRACQICEDKLVEDMKGRASMDEK-KKKVKGILM 103

Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           LMQ    ++EI FP RRDSG+YE+I  YR  HCTH++PTKGGIR++LDV+ DEVKAL+AL
Sbjct: 104 LMQPCDHIIEIAFPLRRDSGDYEMITGYRAQHCTHRTPTKGGIRFSLDVSRDEVKALSAL 163

Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K +C +VPFGGAK G++IDP KY+  ELE+ITR+FALEL KK ++GPGIDVPAPD  
Sbjct: 164 MTFKCACVDVPFGGAKAGVKIDPRKYSEHELEKITRRFALELSKKGFIGPGIDVPAPDMG 223

Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   +  +   
Sbjct: 224 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLDNFIKEA 283

Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
            YM +IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I   +G  I+ 
Sbjct: 284 NYMAQIGTTPGWGGKTFIVQGFGNVGLHSCRYLTRAGATCIGVIEHDGSIFNPQG--IDP 341

Query: 327 KDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
           K L  YK  KGTI G+PG +     ++M+++ DI +PAA+EKVI   NA K+ AKII EA
Sbjct: 342 KALEDYKNEKGTIVGFPGAQPYEGENLMYEQCDIFIPAAVEKVITAENAGKINAKIIAEA 401

Query: 386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISD 445
           ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E + 
Sbjct: 402 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 461

Query: 446 LLLSSIDTSL-----SD--------------TFNKKIRIQKSAMYEDRISNATEKDIVQS 486
            LL+SI  SL     SD              T   KI I+ S  ++ RIS A+EKDIV S
Sbjct: 462 HLLASIQQSLERFVFSDEEKSVQRSLEARFGTVGGKIPIEASEAFKKRISGASEKDIVHS 521

Query: 487 SLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
            L ++M+R+ R I+  A + +  LDLR+AAY +++ KIF+TY +AGL
Sbjct: 522 GLDYTMERSARAIMITAMRYNLGLDLRSAAYINSIEKIFQTYRDAGL 568

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971758|ref|XP_313646.4| AGAP004362-PA [Anopheles gambiae str. PEST] gi|333469014|gb|EAA44573.4| AGAP004362-PA [Anopheles gambiae str. PEST]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/527 (52%), Positives = 360/527 (68%), Gaps = 23/527 (4%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
           H+IPERLKDV    NP FF+ VEY+FHRA Q    +    ++ R   DE    +  GI+M
Sbjct: 45  HQIPERLKDVSTAANPRFFDMVEYFFHRACQICEDKLVEDMKGRASMDEK-KKKVKGILM 103

Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           LMQ    ++EI FP RRDSG+YE+I  YR  HCTH++PTKGGIR++LDV+ DEVKAL+AL
Sbjct: 104 LMQPCDHIIEIAFPLRRDSGDYEMITGYRAQHCTHRTPTKGGIRFSLDVSRDEVKALSAL 163

Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K +C +VPFGGAK G++IDP KY+  ELE+ITR+FALEL KK ++GPGIDVPAPD  
Sbjct: 164 MTFKCACVDVPFGGAKAGVKIDPRKYSEHELEKITRRFALELSKKGFIGPGIDVPAPDMG 223

Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   +  +   
Sbjct: 224 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLDNFIKEA 283

Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
            YM +IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I   +G  I+ 
Sbjct: 284 NYMAQIGTTPGWGGKTFIVQGFGNVGLHSCRYLTRAGATCIGVIEHDGSIFNPQG--IDP 341

Query: 327 KDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
           K L  YK  KGTI G+PG +     ++M+++ DI +PAA+EKVI   NA K+ AKII EA
Sbjct: 342 KALEDYKNEKGTIVGFPGAQPYEGENLMYEQCDIFIPAAVEKVITAENAGKINAKIIAEA 401

Query: 386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISD 445
           ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E + 
Sbjct: 402 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 461

Query: 446 LLLSSIDTSL-----SD--------------TFNKKIRIQKSAMYEDRISNATEKDIVQS 486
            LL+SI  SL     SD                  KI +  S  ++ RIS A+EKDIV S
Sbjct: 462 HLLASIQQSLERFVFSDEEKSVQASLERRFGNVGGKIPVTPSEAFQKRISGASEKDIVHS 521

Query: 487 SLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
            L ++M+R+ R I++ A K +  LDLR+AAY +++ KIF+TY +AGL
Sbjct: 522 GLDYTMERSARAIMKTAMKYNLGLDLRSAAYVNSIEKIFQTYRDAGL 568

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854474|ref|XP_003702746.1| PREDICTED: glutamate dehydrogenase, mitochondrial-like [Megachile rotundata]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/513 (52%), Positives = 361/513 (70%), Gaps = 9/513 (1%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEF--DVSIRARKFTDEDIALRRNGI 84
           H+IPERLK++PD  NP FF+ VEY+FHRA Q +  +   D+  R+R  + E+   +  GI
Sbjct: 42  HQIPERLKNIPDDPNPKFFDMVEYFFHRACQIVEDKLVEDIGKRSR-MSVEERKKKVKGI 100

Query: 85  IMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALA 144
           +MLM+    +LEI FP RRDSG+YE+I  YR  H TH++P KGGIR+++DV+ DEVKAL+
Sbjct: 101 LMLMEPCDHILEICFPLRRDSGDYEMITGYRAQHSTHRTPCKGGIRFSMDVSRDEVKALS 160

Query: 145 ALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPD 204
           ALMT+K +C +VPFGGAK GI+I+P  Y+  ELE+ITR+F LEL KK ++GPG+DVPAPD
Sbjct: 161 ALMTFKCACVDVPFGGAKAGIKINPKLYSEHELEKITRRFTLELAKKGFIGPGLDVPAPD 220

Query: 205 YNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN 264
             T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N
Sbjct: 221 MGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIN 280

Query: 265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI 324
              YM  IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD AI   +G  I
Sbjct: 281 EANYMSMIGTTPGWGGKTFIVQGFGNVGLHSMRYLHRAGATCIGVIEHDGAITNPEG--I 338

Query: 325 NYKDLHTYKITKGTIKGYPGTKSAPTD-IMFDKVDILVPAAIEKVIRKSNADKVQAKIIV 383
           + K L  Y+I  GTI G+PG +    + +MF++ DI +PAA+E+VI K NA +++AKII 
Sbjct: 339 DPKQLEDYRIENGTIVGFPGAEPYEGEGLMFEECDIFIPAAVEQVITKENAGRIKAKIIA 398

Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEI 443
           EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E 
Sbjct: 399 EAANGPTTPAADKILIDRNILVIPDLYMNAGGVTVSFFEWLKNLNHVSYGRLTFKYERES 458

Query: 444 SDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDIL 500
           +  LL S+  SL   F +   +I +  S  ++ RIS A+EKDIV S L ++M+R+ R I+
Sbjct: 459 NYHLLESVQESLERRFGRVGGRIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIM 518

Query: 501 EYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           + A K +  LDLR AAY +++ KIF TY EAGL
Sbjct: 519 KTAMKYNLGLDLRTAAYVNSIEKIFTTYSEAGL 551

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058273|ref|XP_001864850.1| glutamate dehydrogenase [Culex quinquefasciatus] gi|167877430|gb|EDS40813.1| glutamate dehydrogenase [Culex quinquefasciatus]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/521 (52%), Positives = 359/521 (68%), Gaps = 11/521 (2%)

Query: 21  SNPQ----SGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDED 76
           S PQ    S H+IP+RLKDV    NP FF+ VE +FHRA Q +  E  V     K + E+
Sbjct: 37  SQPQRSYASQHQIPDRLKDVATAANPRFFDMVELFFHRACQ-ICEEKMVEDMKGKASVEE 95

Query: 77  IALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVN 136
              +  GI+MLMQ    ++EI FP RRDSG+YE+I  YR  HCTH++PTKGGIR++LDV 
Sbjct: 96  KRKKVKGILMLMQPCDHIIEISFPLRRDSGDYEMITGYRAQHCTHRTPTKGGIRFSLDVC 155

Query: 137 PDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGP 196
            DEVKAL+ALMT+K +C +VPFGGAK GI+IDP  Y+  ELE+ITR+FALEL KK ++GP
Sbjct: 156 RDEVKALSALMTFKCACVDVPFGGAKAGIKIDPKAYSEHELEKITRRFALELSKKGFIGP 215

Query: 197 GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVF 256
           GIDVPAPD  T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF
Sbjct: 216 GIDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVF 275

Query: 257 TAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI 316
              +  +    +M  IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD +I
Sbjct: 276 HGLDNFIREANFMSMIGTTPGWGGKTFIVQGFGNVGLHSCRYLCRAGATCIGVIEHDGSI 335

Query: 317 VPDKGTEINYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNAD 375
               G  I+ K+L  Y+  KGTI G+PG K     ++M++  DI +PAA+EKVI   NA 
Sbjct: 336 FNPAG--IDPKELEDYRNEKGTIVGFPGAKPYEGENLMYEPCDIFIPAAVEKVITSENAG 393

Query: 376 KVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRM 435
           K+ AKII EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR+
Sbjct: 394 KINAKIIAEAANGPTTPAADRILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRL 453

Query: 436 SFGYDKEISDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSM 492
           +F Y++E +  LL S+  SL   F     KI +  SA ++ RIS A+EKDIV S L ++M
Sbjct: 454 TFKYERESNYHLLESVQQSLESRFGNVGGKIPVTPSAAFQKRISGASEKDIVHSGLDYTM 513

Query: 493 QRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           +R+ R I++ A K +  LDLR+AAY +++ KIF+TY +AGL
Sbjct: 514 ERSARAIMKTAMKYNLGLDLRSAAYVNSIEKIFETYRDAGL 554

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523390|ref|XP_392776.2| PREDICTED: glutamate dehydrogenase, mitochondrial isoform 1 [Apis mellifera]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/513 (53%), Positives = 357/513 (69%), Gaps = 9/513 (1%)

Query: 27  HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEF--DVSIRARKFTDEDIALRRNGI 84
           H+IP+ LKD+P+  NP FF+ VEY+FHRA Q +  +   D+  R+R  T E+   +  GI
Sbjct: 42  HQIPDHLKDIPNDPNPKFFDMVEYFFHRACQIVEDKLVEDIGKRSR-MTVEERKKKVKGI 100

Query: 85  IMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALA 144
           +MLM+    +LE  FP RRDSG+YE+I  YR  H TH++P KGGIR+++DV+ DEVKAL+
Sbjct: 101 LMLMERCDHILETSFPLRRDSGDYEMITGYRAQHSTHRTPCKGGIRFSMDVSRDEVKALS 160

Query: 145 ALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPD 204
           ALMT+K +C +VPFGGAK GI+I+P  Y+  ELE+ITR+F LEL KK ++GPG+DVPAPD
Sbjct: 161 ALMTFKCACVDVPFGGAKAGIKINPKLYSEHELEKITRRFTLELAKKGFIGPGVDVPAPD 220

Query: 205 YNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN 264
             T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N
Sbjct: 221 MGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRISATGRGVFHGLENFIN 280

Query: 265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI 324
              YM  IG  P    KT+IVQGFGNVG H+ RY  R  A C+ ++EHD AI   +G  I
Sbjct: 281 EANYMSMIGTTPGWGGKTFIVQGFGNVGLHSMRYLHRAGAACIGVIEHDGAIYNAEG--I 338

Query: 325 NYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIV 383
           + K L  Y+I  GTI G+PG K     ++M++  DI +PAAIEKVI K NA  +QAKII 
Sbjct: 339 DPKKLEDYRIENGTIVGFPGAKPYEGENLMYEPCDIFIPAAIEKVINKDNASFIQAKIIA 398

Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEI 443
           EAANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y+KE 
Sbjct: 399 EAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYEKES 458

Query: 444 SDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDIL 500
           +  LL S+  SL   F +   +I +  S  ++ RIS A+EKDIV S L ++M+R+ R I+
Sbjct: 459 NYHLLESVQESLERRFGRVGGRIPVTPSEAFQKRISGASEKDIVHSGLDYTMERSARAIM 518

Query: 501 EYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           + A K +  LDLR AAY +++ KIF TY EAGL
Sbjct: 519 KTAMKFNLGLDLRTAAYINSIEKIFTTYSEAGL 551

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
FB|FBgn0001098	562	Gdh "Glutamate dehydrogenase"	0.942	0.896	0.501	5.4e-134
WB|WBGene00014095	536	gdh-1 [Caenorhabditis elegans	0.940	0.938	0.456	1.7e-123
UNIPROTKB|P00367	558	GLUD1 "Glutamate dehydrogenase	0.949	0.910	0.472	7.2e-123
ZFIN|ZDB-GENE-030114-2	544	glud1a "glutamate dehydrogenas	0.917	0.902	0.476	7.2e-123
UNIPROTKB|P49448	558	GLUD2 "Glutamate dehydrogenase	0.925	0.887	0.478	1.9e-122
UNIPROTKB|F1SEN2	558	LOC100736902 "Uncharacterized	0.949	0.910	0.471	3.1e-122
ZFIN|ZDB-GENE-030828-1	542	glud1b "glutamate dehydrogenas	0.921	0.909	0.476	5.1e-122
RGD|2708	558	Glud1 "glutamate dehydrogenase	0.921	0.883	0.474	2.2e-121
MGI|MGI:95753	558	Glud1 "glutamate dehydrogenase	0.921	0.883	0.474	2.8e-121
UNIPROTKB|P00366	558	GLUD1 "Glutamate dehydrogenase	0.949	0.910	0.465	5.8e-121

FB|FBgn0001098 Gdh "Glutamate dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 263/524 (50%), Positives = 346/524 (66%)

Query:    27 HKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIM 86
             H+IP+RLKDVP  ++P FF+ VEY+FHR  Q +  E  V     K T ++   +  GI+M
Sbjct:    40 HQIPDRLKDVPTAKDPRFFDMVEYFFHRGCQ-IAEESLVDDMKGKLTRDEKKQKVKGILM 98

Query:    87 LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
             LMQ    ++EI FP RRD+G YE+I  YR  H THK+PTKGGIR++LDV+ DEVKAL+AL
Sbjct:    99 LMQPCDHIIEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRDEVKALSAL 158

Query:   147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
             MT+K +C +VPFGGAK G++I+P +Y+  ELE+ITR+F LEL KK ++GPG+DVPAPD  
Sbjct:   159 MTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMG 218

Query:   207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
             T  REMSW  D YAKT+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N  
Sbjct:   219 TGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFINEA 278

Query:   267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
              YM +IG  P    KT+IVQGFGNVG H  RY  R  A C+ ++EHD  +   +G  I+ 
Sbjct:   279 NYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIEHDGTLYNPEG--IDP 336

Query:   327 KDLHTYKITKGTIKGYPGTKSAPTD-IMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
             K L  YK   GTI GY   K    + +MF+K DI +PAA+EKVI   NA+++QAKII EA
Sbjct:   337 KLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIPAAVEKVITSENANRIQAKIIAEA 396

Query:   386 ANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXX 445
             ANGP TPAA  +L+ +N+L+IPD++ NAGGVTVS+FEWLKN++H S GR++F Y++E   
Sbjct:   397 ANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNY 456

Query:   446 XXXXXXXXXXXXXFNK----------------KIRIQKSAMYEDRISNATEKDIVQSSLT 489
                           N                 +I +  S  ++ RIS A+EKDIV S L 
Sbjct:   457 HLLASVQQSIERIINDESVQESLERRFGRVGGRIPVTPSESFQKRISGASEKDIVHSGLD 516

Query:   490 HSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
             ++M+R+ R I++ A K +  LDLR AAY +++ KIF TY +AGL
Sbjct:   517 YTMERSARAIMKTAMKYNLGLDLRTAAYVNSIEKIFTTYRDAGL 560

GO:0006536 "glutamate metabolic process" evidence=IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006116 "NADH oxidation" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISS;IDA

GO:0046693 "sperm storage" evidence=TAS

GO:0019551 "glutamate catabolic process to 2-oxoglutarate" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00014095 gdh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 232/508 (45%), Positives = 338/508 (66%)

Query:    28 KIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIML 87
             ++ +  K + ++ NP F++ V++YF++  + + P+    +++   + +D     +GI+  
Sbjct:    27 QVLDEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKLAEELKSNSLSQKDKKNLVSGILGA 86

Query:    88 MQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALM 147
             ++  + +L I FP RRD+GE+E+I+ +R  H  H++PTKGGIRY+LDV  DEVKAL+ALM
Sbjct:    87 IKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCEDEVKALSALM 146

Query:   148 TYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNT 207
             TYK +  +VPFGGAKGG++IDP +Y + E+E+ITR+ A+E  KK ++GPG+DVPAPD  T
Sbjct:   147 TYKCAVVDVPFGGAKGGVKIDPKQYTDYEIEKITRRIAIEFAKKGFLGPGVDVPAPDMGT 206

Query:   208 SAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEE 267
               REM W  D YA+T+G  + +A   +TGKP+  GGI GR SATGRGV+   E+  N+ +
Sbjct:   207 GEREMGWIADTYAQTIGHLDRDASACITGKPIVSGGIHGRVSATGRGVWKGLEVFTNDAD 266

Query:   268 YMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK 327
             YM  +GL+  +  KT I+QGFGNVG H  RY  R  +K + I E+D A+    G  I+ K
Sbjct:   267 YMKMVGLDTGLAGKTAIIQGFGNVGLHTHRYLHRAGSKVIGIQEYDCAVYNPDG--IHPK 324

Query:   328 DLHTYKITKGTIKGYPGTKSA-P-TDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEA 385
             +L  +K   GTIK +PG K+  P T++M++K DI VPAA EK I K NA ++QAKII EA
Sbjct:   325 ELEDWKDANGTIKNFPGAKNFDPFTELMYEKCDIFVPAACEKSIHKENASRIQAKIIAEA 384

Query:   386 ANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXX 444
             ANGP TPAA  +LL + + LIIPD++ N+GGVTVSYFEWLKN++H S GR++F YD+E  
Sbjct:   385 ANGPTTPAADRILLARGDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGRLTFKYDEEAN 444

Query:   445 XXXXXXXXXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAE 504
                             K   ++ +A +  +I+ A+EKDIV S L ++MQR+G  I+  A 
Sbjct:   445 KMLLASVQESLSKAVGKDCPVEPNAAFAAKIAGASEKDIVHSGLEYTMQRSGEAIIRTAH 504

Query:   505 KSDNKLDLRNAAYCSALFKIFKTYEEAG 532
             K +  LD+R AAY +++ K++ TY  AG
Sbjct:   505 KYNLGLDIRTAAYANSIEKVYNTYRTAG 532

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

UNIPROTKB|P00367 GLUD1 "Glutamate dehydrogenase 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 245/518 (47%), Positives = 337/518 (65%)

Query:    23 PQSGHKIPERL---KDVPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIA 78
             PQ G  +  R    + V D+E+ P FF+ VE +F R    +  +    +R R+ ++E   
Sbjct:    41 PQPGLALAARRHYSEAVADREDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKR 99

Query:    79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD 138
              R  GI+ +++  + +L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ D
Sbjct:   100 NRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVD 159

Query:   139 EVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198
             EVKALA+LMTYK +  +VPFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGI
Sbjct:   160 EVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGI 219

Query:   199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA 258
             DVPAPD +T  REMSW  D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF  
Sbjct:   220 DVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHG 279

Query:   259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVP 318
              E  +N   YM  +G+ P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I  
Sbjct:   280 IENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWN 339

Query:   319 DKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQ 378
               G  I+ K+L  +K+  G+I G+P  K     I+    DIL+PAA EK + KSNA +V+
Sbjct:   340 PDG--IDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVK 397

Query:   379 AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFG 438
             AKII E ANGP TP A  + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F 
Sbjct:   398 AKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFK 457

Query:   439 YDKEXXXXXXXXXXXXXXXXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRA 495
             Y+++                F K    I I  +A ++DRIS A+EKDIV S L ++M+R+
Sbjct:   458 YERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERS 517

Query:   496 GRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
              R I+  A K +  LDLR AAY +A+ K+FK Y EAG+
Sbjct:   518 ARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKVYNEAGV 555

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0006538 "glutamate catabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0070403 "NAD+ binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0070728 "leucine binding" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

ZFIN|ZDB-GENE-030114-2 glud1a "glutamate dehydrogenase 1a" [Danio rerio (taxid:7955)]

 Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
 Identities = 237/497 (47%), Positives = 331/497 (66%)

Query:    40 ENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQF 99
             ++P FF  VE +F R    +  +    ++ R+ T E    R  GI+ +++  + +L + F
Sbjct:    48 DDPNFFRMVEGFFDRGASIVEDKLVHDLKTRE-TPEQKRHRVRGILKIIKPCNHVLSVSF 106

Query:   100 PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFG 159
             P +RD+GE+E+I+ YR  H  H++P KGGIRY+ +V+ DEVKALA+LMTYK +  +VPFG
Sbjct:   107 PIKRDNGEWEMIEGYRAQHSQHRTPCKGGIRYSTEVSVDEVKALASLMTYKCAVVDVPFG 166

Query:   160 GAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAY 219
             GAK G++I+P  Y++ ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  D Y
Sbjct:   167 GAKAGVKINPKNYSDTELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGEREMSWIADTY 226

Query:   220 AKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCME 279
             A T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  VN   YM ++GL P   
Sbjct:   227 ANTMGHHDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFVNEAAYMSQLGLTPGFG 286

Query:   280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI 339
             +KT+++QGFGNVG H+ RY  R  AKC+ I E D +I    G  I+ K+L  YK+  GTI
Sbjct:   287 DKTFVIQGFGNVGLHSMRYLHRYGAKCVGIGELDGSIWNPSG--IDPKELEDYKLANGTI 344

Query:   340 KGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLL 399
              GYPG  +   +I+  + DIL+PAA EK + K NA+ ++AKII E ANGP TP A  + L
Sbjct:   345 VGYPGATAYEGNILEAECDILIPAASEKQLTKKNANNIKAKIIAEGANGPTTPEADKIFL 404

Query:   400 KKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXXF 459
             ++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++                F
Sbjct:   405 ERNIMVIPDMYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKF 464

Query:   460 NKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAA 516
              K    I I  ++ +++RIS A+EKDIV S L ++M+R+ R I+  A + +  LDLR AA
Sbjct:   465 GKHGGAIPIVPTSDFQERISGASEKDIVHSGLAYTMERSARQIMRTANRYNLGLDLRTAA 524

Query:   517 YCSALFKIFKTYEEAGL 533
             Y +A+ K+FK Y EAGL
Sbjct:   525 YVNAIEKVFKVYHEAGL 541

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P49448 GLUD2 "Glutamate dehydrogenase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 240/502 (47%), Positives = 330/502 (65%)

Query:    36 VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
             V D+E+ P FF+ VE +F R    +  +    +R ++ ++E    R  GI+ +++  + +
Sbjct:    57 VADREDDPNFFKMVEGFFDRGASIVEDKLVKDLRTQE-SEEQKRNRVRGILRIIKPCNHV 115

Query:    95 LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
             L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct:   116 LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 175

Query:   155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
             +VPFGGAK G++I+P  Y   ELE+ITR+F +EL KK ++GPG+DVPAPD NT  REMSW
Sbjct:   176 DVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSW 235

Query:   215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
               D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct:   236 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 295

Query:   275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
              P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+
Sbjct:   296 TPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKL 353

Query:   335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
               G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct:   354 QHGSILGFPKAKPYEGSILEVDCDILIPAATEKQLTKSNAPRVKAKIIAEGANGPTTPEA 413

Query:   395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXX 454
               + L++N+L+IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++            
Sbjct:   414 DKIFLERNILVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLLSVQES 473

Query:   455 XXXXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                 F K    I I  +A ++D IS A+EKDIV S+L ++M+R+ R I+  A K +  LD
Sbjct:   474 LERKFGKHGGTIPIVPTAEFQDSISGASEKDIVHSALAYTMERSARQIMHTAMKYNLGLD 533

Query:   512 LRNAAYCSALFKIFKTYEEAGL 533
             LR AAY +A+ K+FK Y EAG+
Sbjct:   534 LRTAAYVNAIEKVFKVYSEAGV 555

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=IDA

GO:0006536 "glutamate metabolic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0006538 "glutamate catabolic process" evidence=IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0070728 "leucine binding" evidence=IDA

GO:0006537 "glutamate biosynthetic process" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

UNIPROTKB|F1SEN2 LOC100736902 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 244/518 (47%), Positives = 335/518 (64%)

Query:    23 PQSGHKIPERL---KDVPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIA 78
             PQ G   P R    +   D+E+ P FF+ VE +F R    +  +    ++ R+ ++E   
Sbjct:    41 PQPGLAPPARRHYSEAAADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-SEEQKR 99

Query:    79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD 138
              R  GI+ +++  + +L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ D
Sbjct:   100 NRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVD 159

Query:   139 EVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198
             EVKALA+LMTYK +  +VPFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGI
Sbjct:   160 EVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGI 219

Query:   199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA 258
             DVPAPD +T  REMSW  D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF  
Sbjct:   220 DVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHG 279

Query:   259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVP 318
              E  +N   YM  +G+ P   +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I  
Sbjct:   280 IENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWN 339

Query:   319 DKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQ 378
               G  I+ K+L  +K+  GTI G+P  K     I+    DIL+PAA EK + KSNA +V+
Sbjct:   340 PDG--IDPKELEDFKLQHGTILGFPKAKIYEGSILEADCDILIPAASEKQLTKSNAPRVK 397

Query:   379 AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFG 438
             AKII E ANGP TP A  + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F 
Sbjct:   398 AKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFK 457

Query:   439 YDKEXXXXXXXXXXXXXXXXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRA 495
             Y+++                F K    I I  +A ++DRIS A+EKDIV S L ++M+R+
Sbjct:   458 YERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERS 517

Query:   496 GRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
              R I+  A K +  LDLR AAY +A+ K+FK Y EAG+
Sbjct:   518 ARQIMRTAMKYNLGLDLRTAAYVNAIEKVFKVYNEAGV 555

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030828-1 glud1b "glutamate dehydrogenase 1b" [Danio rerio (taxid:7955)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 241/506 (47%), Positives = 335/506 (66%)

Query:    35 DVPDKEN-PGFFESVEYYFHRA---VQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQN 90
             D  DKE+ P FF  VE +F R    V+N + E D+  R    T E    R  GI+ +++ 
Sbjct:    40 DAADKEDDPNFFRMVEGFFDRGATIVENKLVE-DLKTRE---TPEQKRSRVRGILKIIKP 95

Query:    91 YSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYK 150
              + +L + FP +RD+GE+E+I+ YR  H  H++P KGGIRY++DV+ DEVKALA+LMTYK
Sbjct:    96 CNHVLSVSFPIKRDNGEWEVIEGYRAQHSQHRTPCKGGIRYSMDVSVDEVKALASLMTYK 155

Query:   151 NSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAR 210
              +  +VPFGGAK G++I+P  Y++ ELE+ITR+F +EL KK ++GPGIDVPAPD +T  R
Sbjct:   156 CAVVDVPFGGAKAGVKINPRNYSDNELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGER 215

Query:   211 EMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMC 270
             EMSW  D +A T+  T+INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM 
Sbjct:   216 EMSWIADTHANTIAHTDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMS 275

Query:   271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330
             ++GL P   +KT+I+QGFGNVG H  RY  R  AKC+ I E D +I    G  ++ K+L 
Sbjct:   276 KLGLTPGFADKTFIIQGFGNVGLHPMRYLHRYGAKCVGIAEIDGSIWNPNG--MDPKELE 333

Query:   331 TYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPL 390
              YK+  GTI G+P ++    +I+  + DIL+PAA EK + + NA  ++AKII E ANGP 
Sbjct:   334 DYKLQHGTIVGFPNSQPYEGNILEAQCDILIPAAGEKQLTRKNAHNIKAKIIAEGANGPT 393

Query:   391 TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXX 450
             TP A  + +++NV++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++        
Sbjct:   394 TPDADKIFIERNVMVIPDMYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMS 453

Query:   451 XXXXXXXXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD 507
                     F K+   I I  +A ++ R++ A+EKDIV S L ++M+R+ R I+  A K +
Sbjct:   454 VQESLERKFGKQGGPIPIVPTADFQARVAGASEKDIVHSGLAYTMERSARQIMRTANKYN 513

Query:   508 NKLDLRNAAYCSALFKIFKTYEEAGL 533
               LDLR AAY +A+ K+FK Y EAGL
Sbjct:   514 LGLDLRTAAYVNAIEKVFKVYNEAGL 539

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016639 "oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|2708 Glud1 "glutamate dehydrogenase 1" [Rattus norvegicus (taxid:10116)]

 Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
 Identities = 237/500 (47%), Positives = 329/500 (65%)

Query:    38 DKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLE 96
             D+E+ P FF+ VE +F R    +  +    ++ R+  +E    R  GI+ +++  + +L 
Sbjct:    59 DREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-NEEQKRNRVRGILRIIKPCNHVLS 117

Query:    97 IQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNV 156
             + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +V
Sbjct:   118 LSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 177

Query:   157 PFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFY 216
             PFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  
Sbjct:   178 PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIA 237

Query:   217 DAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP 276
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P
Sbjct:   238 DTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 297

Query:   277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK 336
              + +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  
Sbjct:   298 GLGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDG--IDPKELEDFKLQH 355

Query:   337 GTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHA 396
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  
Sbjct:   356 GSILGFPKAKVYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADK 415

Query:   397 MLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXX 456
             + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++              
Sbjct:   416 IFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLE 475

Query:   457 XXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLR 513
               F K    I +  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR
Sbjct:   476 RKFGKHGGTIPVVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLR 535

Query:   514 NAAYCSALFKIFKTYEEAGL 533
              AAY +A+ K+FK Y EAG+
Sbjct:   536 TAAYVNAIEKVFKVYNEAGV 555

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISO;IDA

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=ISO

GO:0006538 "glutamate catabolic process" evidence=ISO;TAS

GO:0007616 "long-term memory" evidence=IEP

GO:0010044 "response to aluminum ion" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0032024 "positive regulation of insulin secretion" evidence=IEA;ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070403 "NAD+ binding" evidence=ISO

GO:0070728 "leucine binding" evidence=ISO

MGI|MGI:95753 Glud1 "glutamate dehydrogenase 1" [Mus musculus (taxid:10090)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 237/500 (47%), Positives = 329/500 (65%)

Query:    38 DKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLE 96
             D+E+ P FF+ VE +F R    +  +    ++ R+ ++E    R  GI+ +++  + +L 
Sbjct:    59 DREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-SEEQKRNRVRGILRIIKPCNHVLS 117

Query:    97 IQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNV 156
             + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +V
Sbjct:   118 LSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 177

Query:   157 PFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFY 216
             PFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  
Sbjct:   178 PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIA 237

Query:   217 DAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP 276
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P
Sbjct:   238 DTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 297

Query:   277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK 336
                +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  
Sbjct:   298 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCVGVGESDGSIWNPDG--IDPKELEDFKLQH 355

Query:   337 GTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHA 396
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  
Sbjct:   356 GSILGFPKAKVYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADK 415

Query:   397 MLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXX 456
             + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++              
Sbjct:   416 IFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLE 475

Query:   457 XXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLR 513
               F K    I +  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR
Sbjct:   476 RKFGKHGGTIPVVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLR 535

Query:   514 NAAYCSALFKIFKTYEEAGL 533
              AAY +A+ K+FK Y EAG+
Sbjct:   536 TAAYVNAIEKVFKVYNEAGV 555

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISO

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=ISO

GO:0006538 "glutamate catabolic process" evidence=ISO

GO:0010044 "response to aluminum ion" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO;IGI

GO:0043531 "ADP binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

GO:0070403 "NAD+ binding" evidence=ISO

GO:0070728 "leucine binding" evidence=ISO

UNIPROTKB|P00366 GLUD1 "Glutamate dehydrogenase 1, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 241/518 (46%), Positives = 333/518 (64%)

Query:    23 PQSGHKIPERL---KDVPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIA 78
             PQ G   P R    +   D+E+ P FF+ VE +F R    +  +    ++ R+ T+E   
Sbjct:    41 PQPGLVPPARRHYSEAAADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-TEEQKR 99

Query:    79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD 138
              R   I+ +++  + +L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ D
Sbjct:   100 NRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVD 159

Query:   139 EVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI 198
             EVKALA+LMTYK +  +VPFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPG+
Sbjct:   160 EVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGV 219

Query:   199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA 258
             DVPAPD +T  REMSW  D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF  
Sbjct:   220 DVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHG 279

Query:   259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVP 318
              E  +N   YM  +G+ P   +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I  
Sbjct:   280 IENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWN 339

Query:   319 DKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQ 378
               G  I+ K+L  +K+  GTI G+P  K     I+    DIL+PAA EK + KSNA +V+
Sbjct:   340 PDG--IDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVK 397

Query:   379 AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFG 438
             AKII E ANGP TP A  + L++N+++IPD++ NAGGVTVSYFEWL N++H S GR++F 
Sbjct:   398 AKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFK 457

Query:   439 YDKEXXXXXXXXXXXXXXXXFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRA 495
             Y+++                F K    I I  +A ++DRIS A+EKDIV S L ++M+R+
Sbjct:   458 YERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERS 517

Query:   496 GRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
              R I+  A K +  LDLR AAY +A+ K+F+ Y EAG+
Sbjct:   518 ARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 555

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0004353 "glutamate dehydrogenase [NAD(P)+

GO:0006538 "glutamate catabolic process" evidence=ISS

GO:0004352 "glutamate dehydrogenase (NAD+) activity" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P10860	DHE3_RAT	1, ., 4, ., 1, ., 3	0.4819	0.9196	0.8817	yes	N/A
Q54KB7	DHE3_DICDI	1, ., 4, ., 1, ., 3	0.4020	0.8560	0.9123	yes	N/A
P96110	DHE3_THEMA	1, ., 4, ., 1, ., 3	0.41	0.6785	0.8725	yes	N/A
Q6GID0	DHE2_STAAR	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
P49448	DHE4_HUMAN	1, ., 4, ., 1, ., 3	0.4880	0.9252	0.8870	yes	N/A
Q64HZ8	DHE4_PANTR	1, ., 4, ., 1, ., 3	0.4840	0.9252	0.8870	yes	N/A
Q9YC65	DHE3_AERPE	1, ., 4, ., 1, ., 3	0.4046	0.6074	0.7775	yes	N/A
P39633	DHE2_BACSU	1, ., 4, ., 1, ., 2	0.3824	0.6242	0.7877	yes	N/A
P29051	DHE41_HALSI	1, ., 4, ., 1, ., 2	0.3424	0.6990	0.8597	yes	N/A
Q5HHC7	DHE2_STAAC	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
P54385	DHE3_DROME	1, ., 4, ., 1, ., 3	0.5095	0.9420	0.8967	yes	N/A
P27346	DHE2_CLODI	1, ., 4, ., 1, ., 2	0.3746	0.6093	0.7743	yes	N/A
O59650	DHE3_PYRKO	1, ., 4, ., 1, ., 3	0.3678	0.6485	0.8242	yes	N/A
Q47950	DHE3_PYRAB	1, ., 4, ., 1, ., 3	0.3604	0.6448	0.8214	yes	N/A
P00368	DHE3_CHICK	1, ., 4, ., 1, ., 3	0.4671	0.9252	0.9840	yes	N/A
Q43314	DHE1_ARATH	1, ., 4, ., 1, ., 3	0.3893	0.6766	0.8807	yes	N/A
Q7A6H8	DHE2_STAAN	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
Q6GAW8	DHE2_STAAS	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
P00367	DHE3_HUMAN	1, ., 4, ., 1, ., 3	0.4826	0.9495	0.9103	yes	N/A
P00366	DHE3_BOVIN	1, ., 4, ., 1, ., 3	0.4749	0.9495	0.9103	yes	N/A
Q99VD0	DHE2_STAAM	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
P80053	DHE2_SULSO	1, ., 4, ., 1, ., 3	0.3680	0.6803	0.8666	yes	N/A
Q7A1B9	DHE2_STAAW	1, ., 4, ., 1, ., 2	0.3691	0.6149	0.7946	yes	N/A
P26443	DHE3_MOUSE	1, ., 4, ., 1, ., 3	0.4819	0.9196	0.8817	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.4.1	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	535
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	1e-110
PLN02477	410	PLN02477, PLN02477, glutamate dehydrogenase	1e-104
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	6e-79
pfam02812	131	pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydr	9e-53
pfam00208	237	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl	4e-50
PTZ00079	454	PTZ00079, PTZ00079, NADP-specific glutamate dehydr	2e-35
PRK14030	445	PRK14030, PRK14030, glutamate dehydrogenase; Provi	1e-34
cd05211	217	cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding	1e-32
PRK14031	444	PRK14031, PRK14031, glutamate dehydrogenase; Provi	1e-31
PRK09414	445	PRK09414, PRK09414, glutamate dehydrogenase; Provi	2e-30
smart00839	102	smart00839, ELFV_dehydrog, Glutamate/Leucine/Pheny	4e-29
cd01075	200	cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d	3e-19
cd05313	254	cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain	3e-15
COG2902	1592	COG2902, COG2902, NAD-specific glutamate dehydroge	8e-06
PTZ00324	1002	PTZ00324, PTZ00324, glutamate dehydrogenase 2; Pro	1e-04

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score =  334 bits (860), Expect = e-110
 Identities = 149/441 (33%), Positives = 218/441 (49%), Gaps = 67/441 (15%)

Query: 96  EIQF--PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
            IQ   P R D G  ++ + YR  H +   P KGG+R+   V  +EVKAL+  MT KN+ 
Sbjct: 34  VIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVKALSFWMTLKNAL 93

Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P+GG KGGI +DP   ++ ELER++R F   + +   +GP  D+PAPD  T+ ++M+
Sbjct: 94  AGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYR--LIGPDTDIPAPDVGTNPQDMA 151

Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y+K +G    +A G+ TGKPL LGG  GR  ATG GVF A               
Sbjct: 152 WMMDEYSKIVG---NSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREA----LKALGDD 204

Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           LE         VQGFGNVG +AA       AK +A+ +    I  + G  ++ + L   K
Sbjct: 205 LE----GARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDG--LDVEALLELK 258

Query: 334 ITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTP 392
             +G++  Y G +    + + +   DIL+P A+E VI + NAD+++AKI+VE ANGP TP
Sbjct: 259 ERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTP 318

Query: 393 AAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSID 452
            A  +LL++ +L++PDI ANAGGV VSY EW++N            +             
Sbjct: 319 EADEILLERGILVVPDILANAGGVIVSYLEWVQN-------AQGLYWT------------ 359

Query: 453 TSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDL 512
                              E+          V   L   M  A   + + A++    +DL
Sbjct: 360 -------------------EEE---------VDEKLERIMVNAFEAVYQAAKE--YGVDL 389

Query: 513 RNAAYCSALFKIFKTYEEAGL 533
           R AAY  A  ++    +  G 
Sbjct: 390 RTAAYILAFERVADAMKARGW 410

Length = 411

>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase

 Score =  318 bits (816), Expect = e-104
 Identities = 148/338 (43%), Positives = 202/338 (59%), Gaps = 26/338 (7%)

Query: 100 PFR---------RDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYK 150
           PFR         +D G       +R  H   + P KGGIRY  +V+PDEV ALA LMT+K
Sbjct: 31  PFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90

Query: 151 NSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAR 210
            + +N+P+GGAKGGI  DP   +  ELER+TR F  ++   + +G   DVPAPD  T+A+
Sbjct: 91  TAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNAQ 148

Query: 211 EMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMC 270
            M+W  D Y+K  G +      +VTGKP+ LGG  GRE+ATGRGV  A E L+   E+  
Sbjct: 149 TMAWILDEYSKFHGFSP----AVVTGKPIDLGGSLGREAATGRGVVFATEALLA--EHGK 202

Query: 271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330
            I        +T+++QGFGNVG  AA+       K +A+ +   A+  + G +I    L 
Sbjct: 203 SI------AGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIP--ALR 254

Query: 331 TYKITKGTIKGYPGTKSA-PTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP 389
            +    G +KG+PG     P DI+ +  D+L+PAA+  VI K NA  V+AK IVEAAN P
Sbjct: 255 KHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHP 314

Query: 390 LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNI 427
             P A  +L KK V+++PDI+AN+GGVTVSYFEW++NI
Sbjct: 315 TDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNI 352

Length = 410

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score =  246 bits (631), Expect = 6e-79
 Identities = 104/286 (36%), Positives = 139/286 (48%), Gaps = 60/286 (20%)

Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG  GRE ATGRGV  A    +        IGL          +QGFGNVG HAAR+   
Sbjct: 1   GGSLGREEATGRGVAYATREALKK----LGIGLA----GARVAIQGFGNVGSHAARFLHE 52

Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG-TKSAPTDIMFDKVDIL 360
             AK +A+ + D  I    G  ++   L  YK   G++ G+PG  +    +++    DIL
Sbjct: 53  AGAKVVAVSDSDGTIYNPDG--LDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDIL 110

Query: 361 VPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSY 420
           +PAA+E  I   NAD+++AKIIVEAANGP TP A  +L ++ VL++PDI ANAGGVTVSY
Sbjct: 111 IPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSY 170

Query: 421 FEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATE 480
           FEW++N+                                           Y D       
Sbjct: 171 FEWVQNLQG----------------------------------------FYWDE------ 184

Query: 481 KDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFK 526
            + V S L   M+ A   +LE AEK    +DLR AAY  AL ++ +
Sbjct: 185 -EEVNSRLETKMREAFEAVLETAEKYG--VDLRTAAYVLALERVAE 227

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|202408 pfam02812, ELFV_dehydrog_N, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain

 Score =  174 bits (445), Expect = 9e-53
 Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 2/127 (1%)

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           ++++ P R D GE E ++ YR  H T   P KGGIR+   V  +EVK LA  MTYKN+ +
Sbjct: 5   IQVRVPVRMDDGEVEGLRGYRVQHNTALGPAKGGIRFHPYVTLEEVKRLAFGMTYKNALA 64

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
            +PFGG KGGI  DP   ++ ELER+TR F  EL     +GPG D+PAPD  T  REM+W
Sbjct: 65  GLPFGGGKGGIIGDPKGLSDAELERLTRAFGRELES--IIGPGRDIPAPDVGTGPREMAW 122

Query: 215 FYDAYAK 221
             D Y +
Sbjct: 123 IADEYRR 129

Length = 131

>gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  171 bits (437), Expect = 4e-50
 Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 13/194 (6%)

Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG  GR  ATG GV    E      E + ++G +  +E KT  VQGFGNVG +AA     
Sbjct: 1   GGSLGRPEATGYGVVYFVE------EALKKLGGDS-LEGKTVAVQGFGNVGSYAAEKLLE 53

Query: 302 GRAKCLAIVEHDTAIVPDKGTEINY-KDLHTYKITKGTIKGYPGTKS---APTDIMFDKV 357
             AK +A+ +    I    G +I    +L   +   G +  Y G+ +   +  ++     
Sbjct: 54  LGAKVVAVSDSSGYIYDPNGIDIEELLEL--KEEGGGRVVEYAGSGAEYISGEELWEIDC 111

Query: 358 DILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT 417
           DILVP A +  I + NA  ++AK +VE AN P TP A  +L ++ +L  PD  ANAGGVT
Sbjct: 112 DILVPCATQNEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVT 171

Query: 418 VSYFEWLKNISHSS 431
           VSY E ++N S  S
Sbjct: 172 VSYLEMVQNSSRLS 185

Length = 237

>gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase; Provisional

 Score =  137 bits (348), Expect = 2e-35
 Identities = 110/357 (30%), Positives = 158/357 (44%), Gaps = 36/357 (10%)

Query: 91  YSSLLE--------IQF--PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEV 140
           Y  +LE        IQF  P+  D GE  + + +R  + +   P KGG+R+   VN   +
Sbjct: 52  YLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSIL 111

Query: 141 KALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV 200
           K L     +KNS + +P GG KGG   DP   ++ E+ R  + F  EL +  ++GP  DV
Sbjct: 112 KFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYR--HIGPDTDV 169

Query: 201 PAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAA 259
           PA D     RE+ + +  Y K   +      G +TGK +  GG   R  ATG G V+   
Sbjct: 170 PAGDIGVGGREIGYLFGQYKKLRNNFE----GTLTGKNVKWGGSNIRPEATGYGLVYFVL 225

Query: 260 EILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPD 319
           E+L    +          +E KT +V G GNV  +A     +  AK L + + D  I   
Sbjct: 226 EVLKKLND---------SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEP 276

Query: 320 KG-TEINYKDLHTYKITK-GTIKGY----PGTKSAPTDIMFD-KVDILVPAAIEKVIRKS 372
            G T+     L   K  K G +K Y       K  P    ++   DI  P A +  I   
Sbjct: 277 NGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLE 336

Query: 373 NADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
           +A  +     K++ E AN P T  A  +  K  V+  P   ANAGGV +S  E  +N
Sbjct: 337 DAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQN 393

Length = 454

>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional

 Score =  135 bits (341), Expect = 1e-34
 Identities = 111/362 (30%), Positives = 160/362 (44%), Gaps = 26/362 (7%)

Query: 81  RNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEV 140
           +  II  +     +   + P+  D GE ++   YR        P KGGIR+   VN   +
Sbjct: 43  KAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVNLSIL 102

Query: 141 KALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV 200
           K L    T+KN+ + +P GG KGG    P   ++ E+ R  + F LEL +  ++GP  DV
Sbjct: 103 KFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPDTDV 160

Query: 201 PAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAE 260
           PA D     RE+ + +  Y K L        G +TGK L  GG   R  ATG G    A 
Sbjct: 161 PAGDIGVGGREVGYMFGMY-KKLTREFT---GTLTGKGLEFGGSLIRPEATGFG----AL 212

Query: 261 ILVNNEEYMCE-IGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI-VP 318
             V+    M E  G++  ++ KT  + GFGNV + AA       AK + I   D  I  P
Sbjct: 213 YFVHQ---MLETKGID--IKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDP 267

Query: 319 D--KGTEINYK-DLHTY--KITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKS 372
           D   G +I+Y  +L      I     + +PG+        ++ KVDI +P A +  +   
Sbjct: 268 DGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGE 327

Query: 373 NADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429
           +ADK+       + E +N   T  A    +    L  P    NAGGV  S  E  +N  H
Sbjct: 328 DADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMH 387

Query: 430 SS 431
            S
Sbjct: 388 LS 389

Length = 445

>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score =  124 bits (312), Expect = 1e-32
 Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309
           ATG GV  A +        M  +G     E  T  VQG GNVG+  A+       K LA+
Sbjct: 1   ATGYGVVVAMK------AAMKHLGDSL--EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAV 52

Query: 310 VEHDTAIVPDKGTE---INYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIE 366
            + D  I     T    INY          G+ +           I+   VDI  P A+ 
Sbjct: 53  SDPDGYIYDPGITTEELINYAVALG-----GSARVKVQDYFPGEAILGLDVDIFAPCALG 107

Query: 367 KVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
            VI   NA K++AK++ E AN P T  A  +L ++ +++ PDI ANAGGV VSYFEW++N
Sbjct: 108 NVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEWVQN 167

Query: 427 IS 428
           + 
Sbjct: 168 LQ 169

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217

>gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional

 Score =  126 bits (319), Expect = 1e-31
 Identities = 102/333 (30%), Positives = 148/333 (44%), Gaps = 25/333 (7%)

Query: 104 DSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKG 163
           D G  +    YR  H     P KGGIR+   VN   +K LA   T+KNS + +P GG KG
Sbjct: 66  DKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKG 125

Query: 164 GIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTL 223
           G    P   +N E+ R  + F LEL    ++GP  DVPA D     RE+ + +  Y K  
Sbjct: 126 GSDFSPRGKSNAEVMRFCQAFMLELW--RHIGPETDVPAGDIGVGGREVGFMFGMYKKL- 182

Query: 224 GSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEIGLEPCMENKT 282
             ++    G  TGK    GG   R  ATG G ++   E+L          G +  ++ K 
Sbjct: 183 --SHEFT-GTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTK-------GTD--LKGKV 230

Query: 283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD--LHTYKITKGTIK 340
            +V G GNV  + A        K + + + D  I    G +    D  +    + +G I+
Sbjct: 231 CLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR 290

Query: 341 GYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQAK---IIVEAANGPLTPA 393
            Y    G K       + +K DI +P+A +  +   +A ++ A     + E AN P TP 
Sbjct: 291 EYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPE 350

Query: 394 AHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
           A  +     +L  P   ANAGGV+VS  E  +N
Sbjct: 351 AIKVFQDAKILYAPGKAANAGGVSVSGLEMTQN 383

Length = 444

>gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional

 Score =  123 bits (311), Expect = 2e-30
 Identities = 102/320 (31%), Positives = 148/320 (46%), Gaps = 32/320 (10%)

Query: 124 PTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRK 183
           P KGG+R+   VN   +K L     +KN+ + +P GG KGG   DP   ++ E+ R  + 
Sbjct: 90  PYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQS 149

Query: 184 FALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGG 243
           F  EL +  ++GP  DVPA D     RE+ + +  Y K L  TN    G++TGK L  GG
Sbjct: 150 FMTELYR--HIGPDTDVPAGDIGVGGREIGYLFGQY-KRL--TN-RFEGVLTGKGLSFGG 203

Query: 244 IRGRESATGRG-VFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG 302
              R  ATG G V+ A E+L    +           E K  +V G GNV  +A    ++ 
Sbjct: 204 SLIRTEATGYGLVYFAEEMLKARGD---------SFEGKRVVVSGSGNVAIYAIEKAQQL 254

Query: 303 RAKCLAIVEHDTAIVPDKGTEINYKDLHTYK-ITKGTIKGYPGTKSA-------PTDIMF 354
            AK +   +    +  ++G  I+ + L   K + +G I  Y     A       P  +  
Sbjct: 255 GAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSV-- 310

Query: 355 DKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFA 411
              DI +P A +  + + +A  + A   K + E AN P TP A  + L+  VL  P   A
Sbjct: 311 -PCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAA 369

Query: 412 NAGGVTVSYFEWLKNISHSS 431
           NAGGV  S  E  +N S  S
Sbjct: 370 NAGGVATSGLEMSQNASRLS 389

Length = 445

>gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

 Score =  110 bits (277), Expect = 4e-29
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 9/106 (8%)

Query: 356 KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGG 415
             DI +P A++ VI ++NA+++ AKII E AN PLT  A  +L  + VL  PD  ANAGG
Sbjct: 2   NCDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGG 61

Query: 416 VTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK 461
           V VS  E L+N++ +          +E+   L   +  +L + F  
Sbjct: 62  VIVSALEMLQNLART---------AEEVFTDLSEIMRNALEEIFET 98

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Length = 102

>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 48/171 (28%), Positives = 66/171 (38%), Gaps = 34/171 (19%)

Query: 251 TGRGVFT----AAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKC 306
           T  GVF     AAE L+  +           +E KT  VQG G VG+  A +     AK 
Sbjct: 5   TAYGVFLGMKAAAEHLLGTDS----------LEGKTVAVQGLGKVGYKLAEHLLEEGAKL 54

Query: 307 LAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIE 366
             IV     I  +                    + +  T  AP +I     D+  P A+ 
Sbjct: 55  --IV---ADINEEAVARA--------------AELFGATVVAPEEIYSVDADVFAPCALG 95

Query: 367 KVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK-KNVLIIPDIFANAGGV 416
            VI      +++AK I  AAN  L    H  +L  + +L  PD   NAGG+
Sbjct: 96  GVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGL 146

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200

>gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 60/216 (27%), Positives = 81/216 (37%), Gaps = 36/216 (16%)

Query: 235 TGKPLFLGGIRGRESATGRG-VFTAAEIL-VNNEEYMCEIGLEPCMENKTYIVQGFGNVG 292
           TGK L  GG   R  ATG G V+   E+L   NE            + K   + G GNV 
Sbjct: 1   TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETL----------KGKRVAISGSGNVA 50

Query: 293 FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH--------------TYKITKGT 338
            +AA       AK + + +    +    G     + L                Y    GT
Sbjct: 51  QYAAEKLLELGAKVVTLSDSKGYVYDPDG--FTGEKLAELKEIKEVRRGRVSEYAKKYGT 108

Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAH 395
            K + G K  P ++     DI  P A +  +   +A  +     K + E AN P T  A 
Sbjct: 109 AKYFEGKK--PWEV---PCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAI 163

Query: 396 AMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS 431
            +  +  VL  P   ANAGGV VS  E  +N    S
Sbjct: 164 EVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLS 199

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254

>gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 23/185 (12%)

Query: 348  APTDIM-FDKVDILVPAAIE---KVIRKSN------ADKVQAKIIVEAANGPLTPAAHAM 397
            AP D++    +   V A+ E    V  ++N       ++V+AK+I E AN  +T      
Sbjct: 1074 APVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIE 1133

Query: 398  LLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSL---GRMSFGYDKEISDLLLSSID-- 452
                   I  D   N+ GV  S  E    I+ +S    G+++ G   E + LL S  D  
Sbjct: 1134 FALAGGRINTDAIDNSAGVDCSDHEVNIKIALNSAVFAGKLTRG---ERNALLASMTDEV 1190

Query: 453  TSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEY-AEKSDNKLD 511
             SL    N     Q  A+      N +      S    +++  G    E     SD +L 
Sbjct: 1191 ASLVLRNNYL---QTEAISLLERLNLSLITE-LSRFISTLEAKGLLDREVEFLPSDAELA 1246

Query: 512  LRNAA 516
             RNAA
Sbjct: 1247 ERNAA 1251

Length = 1592

>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 374 ADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWL 424
             K++ KIIVE AN  +T  A   L +  V++  D  AN GGVT S  E L
Sbjct: 793 NGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEVL 843

Length = 1002

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PRK14030	445	glutamate dehydrogenase; Provisional	100.0
PLN02477	410	glutamate dehydrogenase	100.0
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	100.0
PRK09414	445	glutamate dehydrogenase; Provisional	100.0
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	100.0
PRK14031	444	glutamate dehydrogenase; Provisional	100.0
KOG2250|consensus	514		100.0
PTZ00324	1002	glutamate dehydrogenase 2; Provisional	100.0
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	100.0
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	100.0
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	100.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	100.0
PF02812	131	ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, di	100.0
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	100.0
smart00839	102	ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali	99.96
COG2902	1592	NAD-specific glutamate dehydrogenase [Amino acid t	99.89
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	99.82
PRK08374	336	homoserine dehydrogenase; Provisional	99.21
PRK06392	326	homoserine dehydrogenase; Provisional	99.15
PRK06270	341	homoserine dehydrogenase; Provisional	98.72
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.26
PLN02700	377	homoserine dehydrogenase family protein	98.14
PRK06813	346	homoserine dehydrogenase; Validated	98.1
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.8
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.52
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.51
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.46
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.45
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.42
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.25
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.24
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.24
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.22
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.07
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.96
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.96
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.92
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.81
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.79
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.66
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.62
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.59
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.55
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.55
PLN02494	477	adenosylhomocysteinase	96.52
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.48
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.48
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.41
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.36
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.31
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.27
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.24
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.22
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.15
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.12
PRK07574	385	formate dehydrogenase; Provisional	96.08
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.08
PLN03139	386	formate dehydrogenase; Provisional	96.06
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.04
PRK13243	333	glyoxylate reductase; Reviewed	96.02
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.01
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	95.88
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.86
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.77
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	95.77
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.76
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.71
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.7
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.65
PRK15059	292	tartronate semialdehyde reductase; Provisional	95.6
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.57
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.54
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.44
PRK06436	303	glycerate dehydrogenase; Provisional	95.41
PRK06932	314	glycerate dehydrogenase; Provisional	95.4
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.36
PRK13529	563	malate dehydrogenase; Provisional	95.33
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.17
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.15
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	95.15
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.13
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.12
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.09
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.09
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.08
PRK06487	317	glycerate dehydrogenase; Provisional	95.07
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.03
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.02
PRK12480	330	D-lactate dehydrogenase; Provisional	94.97
PLN02928	347	oxidoreductase family protein	94.9
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.83
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.82
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	94.8
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.79
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.77
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.74
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	94.68
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.66
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.66
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.62
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.62
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	94.61
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.55
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.53
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	94.5
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.45
PTZ00317	559	NADP-dependent malic enzyme; Provisional	94.45
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.42
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.41
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.38
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.38
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.37
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.3
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	94.27
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.24
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.22
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.17
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	94.11
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.07
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	93.98
KOG1370|consensus	434		93.86
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	93.83
PLN02712	667	arogenate dehydrogenase	93.78
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.72
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.69
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.69
PRK08223	287	hypothetical protein; Validated	93.62
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.62
PRK07680	273	late competence protein ComER; Validated	93.59
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.57
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.51
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.48
PRK06349	426	homoserine dehydrogenase; Provisional	93.41
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	93.38
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.36
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.32
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.32
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.32
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.29
PRK12862	763	malic enzyme; Reviewed	93.24
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.16
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.12
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.11
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	93.11
PLN00203	519	glutamyl-tRNA reductase	93.1
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.07
PRK08328	231	hypothetical protein; Provisional	93.07
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.05
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.05
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.03
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.01
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.96
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.9
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	92.82
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.8
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.66
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.63
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.55
PRK07417	279	arogenate dehydrogenase; Reviewed	92.47
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.44
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.42
PLN02256	304	arogenate dehydrogenase	92.42
PRK12861	764	malic enzyme; Reviewed	92.37
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.34
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.3
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.13
TIGR00036	266	dapB dihydrodipicolinate reductase.	92.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.05
PRK08605	332	D-lactate dehydrogenase; Validated	92.03
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.98
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	91.96
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.95
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.91
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.86
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.76
PRK14851	679	hypothetical protein; Provisional	91.76
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.75
PLN02688	266	pyrroline-5-carboxylate reductase	91.74
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.67
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.65
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.61
PRK14982	340	acyl-ACP reductase; Provisional	91.51
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.46
KOG2380|consensus	480		91.41
PLN02858	1378	fructose-bisphosphate aldolase	91.35
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	91.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.3
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.29
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.27
PRK13940	414	glutamyl-tRNA reductase; Provisional	91.24
PLN02858	1378	fructose-bisphosphate aldolase	91.13
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.07
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	91.03
PRK06153	393	hypothetical protein; Provisional	91.02
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.97
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	90.96
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	90.91
PRK09496	453	trkA potassium transporter peripheral membrane com	90.9
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	90.84
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	90.81
PRK13403	335	ketol-acid reductoisomerase; Provisional	90.76
PRK09496	453	trkA potassium transporter peripheral membrane com	90.74
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	90.73
KOG2018|consensus	430		90.72
PRK04148	134	hypothetical protein; Provisional	90.69
PRK13303	265	L-aspartate dehydrogenase; Provisional	90.64
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	90.42
PRK10669	558	putative cation:proton antiport protein; Provision	90.37
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.33
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	90.21
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.18
PLN02306	386	hydroxypyruvate reductase	90.15
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	90.13
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.07
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.06
PRK06141	314	ornithine cyclodeaminase; Validated	89.96
PRK07877	722	hypothetical protein; Provisional	89.92
PRK14852	989	hypothetical protein; Provisional	89.92
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	89.91
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	89.81
PRK05225	487	ketol-acid reductoisomerase; Validated	89.62
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	89.62
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.6
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	89.59
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	89.58
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.58
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	89.42
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.34
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	89.27
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	89.2
PRK08507	275	prephenate dehydrogenase; Validated	89.14
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	89.03
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	88.76
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	88.65
PLN02712	667	arogenate dehydrogenase	88.63
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	88.43
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	88.3
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.24
KOG0023|consensus	360		88.18
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.16
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.08
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	88.06
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.04
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	87.85
KOG0022|consensus	375		87.82
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	87.63
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	87.52
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	87.43
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	87.25
PRK05717	255	oxidoreductase; Validated	87.24
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	87.23
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	87.19
PRK08265	261	short chain dehydrogenase; Provisional	87.18
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	87.12
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	87.02
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	86.99
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	86.96
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	86.86
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.85
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	86.8
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	86.76
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	86.7
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	86.7
PRK06949	258	short chain dehydrogenase; Provisional	86.68
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	86.51
PRK11579	346	putative oxidoreductase; Provisional	86.48
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	86.34
KOG0068|consensus	406		86.18
PRK07340	304	ornithine cyclodeaminase; Validated	86.02
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	85.96
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	85.87
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	85.86
PRK08655	437	prephenate dehydrogenase; Provisional	85.75
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	85.46
KOG0069|consensus	336		85.45
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	85.11
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	84.99
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	84.94
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	84.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	84.79
KOG0409|consensus	327		84.67
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	84.64
PRK06849	389	hypothetical protein; Provisional	84.63
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.61
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	84.6
PRK08339	263	short chain dehydrogenase; Provisional	84.45
PRK05867	253	short chain dehydrogenase; Provisional	84.45
COG2130	340	Putative NADP-dependent oxidoreductases [General f	84.38
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	84.38
PRK05562	223	precorrin-2 dehydrogenase; Provisional	84.33
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	84.15
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	84.09
PRK06182	273	short chain dehydrogenase; Validated	84.09
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	83.97
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.78
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	83.77
COG2344	211	AT-rich DNA-binding protein [General function pred	83.75
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	83.71
PRK12828	239	short chain dehydrogenase; Provisional	83.7
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	83.65
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	83.6
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.28
COG0673	342	MviM Predicted dehydrogenases and related proteins	83.18
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	83.08
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	82.69
PRK06841	255	short chain dehydrogenase; Provisional	82.66
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	82.58
PRK07060	245	short chain dehydrogenase; Provisional	82.5
PRK06046	326	alanine dehydrogenase; Validated	82.43
PRK07774	250	short chain dehydrogenase; Provisional	82.25
PRK06545	359	prephenate dehydrogenase; Validated	81.99
PRK05872	296	short chain dehydrogenase; Provisional	81.88
PRK06057	255	short chain dehydrogenase; Provisional	81.87
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.79
PRK05876	275	short chain dehydrogenase; Provisional	81.76
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.76
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	81.74
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	81.72
PRK08177	225	short chain dehydrogenase; Provisional	81.62
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	81.6
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	81.58
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	81.57
PTZ00431	260	pyrroline carboxylate reductase; Provisional	81.45
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	81.45
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	81.16
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.12
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	81.09
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	80.97
PRK08628	258	short chain dehydrogenase; Provisional	80.96
PRK09186	256	flagellin modification protein A; Provisional	80.94
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	80.89
PRK06125	259	short chain dehydrogenase; Provisional	80.8
PTZ00082	321	L-lactate dehydrogenase; Provisional	80.8
COG0300	265	DltE Short-chain dehydrogenases of various substra	80.67
PRK06138	252	short chain dehydrogenase; Provisional	80.66
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	80.61
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.44
PRK12938	246	acetyacetyl-CoA reductase; Provisional	80.26
PLN02240	352	UDP-glucose 4-epimerase	80.26
PRK12742	237	oxidoreductase; Provisional	80.12

>PRK14030 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=5.9e-125  Score=1001.04  Aligned_cols=420  Identities=27%  Similarity=0.390  Sum_probs=393.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEE
Q psy1913          38 DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCH  117 (535)
Q Consensus        38 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~  117 (535)
                      ...+|+||+++..+|++|+++++  +.++            ....+++++|++|+|+|+|+|||+||||++++|+|||||
T Consensus        14 ~~~e~eF~~~~~~~~~~~~~~l~--~~~~------------y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvq   79 (445)
T PRK14030         14 HPGESEYLQAVKEVLLSVEDVYN--QHPE------------FEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQ   79 (445)
T ss_pred             CcCChHHHHHHHHHHHHHHHHHc--cChh------------hhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEE
Confidence            34579999999999999999997  2110            012348999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCC
Q psy1913         118 HCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPG  197 (535)
Q Consensus       118 H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~  197 (535)
                      ||+++||+||||||||+++++|+++||+||||||||+|||||||||||.+||+.+|+.||||++|+|+++|.+  ||||+
T Consensus        80 hn~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~--~iGp~  157 (445)
T PRK14030         80 FNNAIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWR--HIGPD  157 (445)
T ss_pred             ecCcccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHH--hcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996  99999


Q ss_pred             CcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCC
Q psy1913         198 IDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC  277 (535)
Q Consensus       198 ~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~  277 (535)
                      +|||||||||++++|+||+|+|+++.|.    .+++|||||+.+|||.||.+||||||++++++++      +.+|+  +
T Consensus       158 ~DIpApDvgt~~~~M~w~~d~y~~~~~~----~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~------~~~g~--~  225 (445)
T PRK14030        158 TDVPAGDIGVGGREVGYMFGMYKKLTRE----FTGTLTGKGLEFGGSLIRPEATGFGALYFVHQML------ETKGI--D  225 (445)
T ss_pred             CCccccccCCCHHHHHHHHHHHHhccCc----cccEEEccccccCCCCCCCCccHHHHHHHHHHHH------HHcCC--C
Confidence            9999999999999999999999998875    3799999999999999999999999999999665      45676  5


Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCcc-----cCCCCcccC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIK-----GYPGTKSAP  349 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~-----~~~~a~~i~  349 (535)
                      |+|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++   |++++++++++.     +||+++.++
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~G--ld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~  303 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDG--ISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA  303 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC
Confidence            89999999999999999999999999999999999999999999  99888   888999988876     788888888


Q ss_pred             C-CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913         350 T-DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK  425 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q  425 (535)
                      + ++|+++||||+|||++|+||.+||++|   +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+|
T Consensus       304 ~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~q  383 (445)
T PRK14030        304 GKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQ  383 (445)
T ss_pred             CccceeccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhc
Confidence            8 999999999999999999999999999   999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK  505 (535)
Q Consensus       426 n~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~  505 (535)
                      |+++++|       +++                                        +|+++|+++|.++|++|++.+++
T Consensus       384 n~~~~~w-------~~e----------------------------------------eV~~~L~~~m~~~~~~v~~~~~~  416 (445)
T PRK14030        384 NAMHLSW-------SAE----------------------------------------EVDEKLHQIMSGIHEQCVKYGKE  416 (445)
T ss_pred             cccccCc-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999766       664                                        29999999999999999999999


Q ss_pred             cCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         506 SDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       506 ~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      ++..+|||+|||++|++||++||+.||+|
T Consensus       417 ~~~~~~lr~aA~~~a~~rva~a~~~rG~~  445 (445)
T PRK14030        417 GDGYINYVKGANIAGFMKVAKAMLAQGVV  445 (445)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            85337999999999999999999999975

>PLN02477 glutamate dehydrogenase

Probab=100.00  E-value=1.5e-124  Score=993.26  Aligned_cols=407  Identities=38%  Similarity=0.633  Sum_probs=391.3

Q ss_pred             CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913          43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK  122 (535)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~  122 (535)
                      ++|+++..||++|+++++  +                 +++++++|++|+|+++|+|||+||||++++|+|||||||+++
T Consensus         2 ~~~~~~~~~~~~a~~~~~--~-----------------~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~   62 (410)
T PLN02477          2 NALAATNRNFREAARLLG--L-----------------DSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNAR   62 (410)
T ss_pred             CHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCcc
Confidence            689999999999999998  4                 578899999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913         123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA  202 (535)
Q Consensus       123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa  202 (535)
                      ||+||||||||++|++||++||+||||||||++||||||||||++||+.+|..|+|+++|+|+++|.+  +|||.+||||
T Consensus        63 GP~kGGiR~~p~v~~~ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~--~iG~~~Dipa  140 (410)
T PLN02477         63 GPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHD--LIGIHTDVPA  140 (410)
T ss_pred             CCCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHH--hcCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999986  9999999999


Q ss_pred             CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcE
Q psy1913         203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKT  282 (535)
Q Consensus       203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~  282 (535)
                      |||||++++|+||+|+|+++.|++    +++|||||+.+|||.||.++|||||+++++++++      .+|.  +++|+|
T Consensus       141 pDvgt~~~~M~w~~d~y~~~~g~~----~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~------~~g~--~l~g~~  208 (410)
T PLN02477        141 PDMGTNAQTMAWILDEYSKFHGFS----PAVVTGKPIDLGGSLGREAATGRGVVFATEALLA------EHGK--SIAGQT  208 (410)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhCCC----CceEeCCCcccCCCCCCCccchHHHHHHHHHHHH------HcCC--CccCCE
Confidence            999999999999999999999863    8999999999999999999999999999996654      5675  589999


Q ss_pred             EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEe
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILV  361 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILi  361 (535)
                      |+||||||||+++|++|++.|+|||||||++|+||||+|  ||+++|++++++++++.+|++++.+++ ++|..+||||+
T Consensus       209 VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~G--LD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~Dvli  286 (410)
T PLN02477        209 FVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENG--LDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLI  286 (410)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCC--CCHHHHHHHHHhcCchhccccceEecCccceeccccEEe
Confidence            999999999999999999999999999999999999999  999999999999999999999998988 99999999999


Q ss_pred             eccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccch
Q psy1913         362 PAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK  441 (535)
Q Consensus       362 PaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~  441 (535)
                      |||++++||++||++++||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|       ++
T Consensus       287 P~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w-------~~  359 (410)
T PLN02477        287 PAALGGVINKENAADVKAKFIVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMW-------EE  359 (410)
T ss_pred             eccccccCCHhHHHHcCCcEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCC-------CH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998755       66


Q ss_pred             hhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Q psy1913         442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSAL  521 (535)
Q Consensus       442 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai  521 (535)
                      +                                        +|.++|+++|.++|++|++.+++++  +++|+|||++|+
T Consensus       360 ~----------------------------------------~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~a~  397 (410)
T PLN02477        360 E----------------------------------------KVNRELDRYMTDAFKALKEMCKTHN--CSLRMGAFTLGV  397 (410)
T ss_pred             H----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence            4                                        2889999999999999999999996  799999999999


Q ss_pred             HHHHHHHHHcCC
Q psy1913         522 FKIFKTYEEAGL  533 (535)
Q Consensus       522 ~rv~~a~~~~G~  533 (535)
                      +||+++|+.||+
T Consensus       398 ~rv~~a~~~rG~  409 (410)
T PLN02477        398 NRVARATVLRGW  409 (410)
T ss_pred             HHHHHHHHhhCC
Confidence            999999999995

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-125  Score=982.70  Aligned_cols=409  Identities=37%  Similarity=0.642  Sum_probs=390.7

Q ss_pred             CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913          43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK  122 (535)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~  122 (535)
                      ++|+++..++.+|++.+.  +                 +++++++|+.|+|.++|++||+||+|++++|+|||+|||+++
T Consensus         2 ~~~~~a~~~~~~~~~~~~--~-----------------~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~   62 (411)
T COG0334           2 NEFEQAVKELEKALEPLY--L-----------------DEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSAL   62 (411)
T ss_pred             cHHHHHHHHHHHhhhhcc--C-----------------chhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCc
Confidence            578999999999988865  2                 468899999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913         123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA  202 (535)
Q Consensus       123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa  202 (535)
                      ||+||||||||+||++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+  +|||.+||||
T Consensus        63 GP~kGGiRfhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~--~iGp~~dIpA  140 (411)
T COG0334          63 GPYKGGVRFHPYVTLEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYR--LIGPDTDIPA  140 (411)
T ss_pred             CCccCceecCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHH--hcCCCcEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999997  8999999999


Q ss_pred             CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcE
Q psy1913         203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKT  282 (535)
Q Consensus       203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~  282 (535)
                      |||||++|+|+||+|+|+++.|..   .+|++||||+++|||.+|.+||||||++++++      +++.+|.  +|+|+|
T Consensus       141 pDvgt~~~~m~wm~dey~~i~g~~---~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~------a~~~~g~--~l~G~r  209 (411)
T COG0334         141 PDVGTNPQDMAWMMDEYSKIVGNS---APGVFTGKPLELGGSLGRSEATGYGVFYAIRE------ALKALGD--DLEGAR  209 (411)
T ss_pred             cccCCCHHHHHHHHHhhhhhcCCC---CcceecCCcccccCCCCCCcccceehHHHHHH------HHHHcCC--CcCCCE
Confidence            999999999999999999999875   68999999999999999999999999999994      4456775  389999


Q ss_pred             EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEe
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILV  361 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILi  361 (535)
                      |+||||||||+++|++|++.|+|||++||++|+||||+|  ||+++|.+.+++.+++..|++++.+++ ++|+++||||+
T Consensus       210 VaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~G--ld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~  287 (411)
T COG0334         210 VAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDG--LDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI  287 (411)
T ss_pred             EEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCC--CCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence            999999999999999999999999999999999999999  999999988888899999999999999 99999999999


Q ss_pred             eccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccch
Q psy1913         362 PAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK  441 (535)
Q Consensus       362 PaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~  441 (535)
                      |||++|+||.+||++|+||+|+||||+|+|+||+++|.+|||+|+||+++||||||+|||||+||+++++|       ++
T Consensus       288 PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~w-------t~  360 (411)
T COG0334         288 PCALENVITEDNADQLKAKIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYW-------TE  360 (411)
T ss_pred             ccccccccchhhHHHhhhcEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCcc-------CH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998655       77


Q ss_pred             hhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Q psy1913         442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSAL  521 (535)
Q Consensus       442 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai  521 (535)
                      +                                        +|.++|+.+|.++|+.+++.+++++  +|+|+|||++|+
T Consensus       361 e----------------------------------------ev~~kl~~im~~~~~~~~~~~~~~~--~~~r~aA~~~a~  398 (411)
T COG0334         361 E----------------------------------------EVDEKLERIMVNAFEAVYQAAKEYG--VDLRTAAYILAF  398 (411)
T ss_pred             H----------------------------------------HHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence            5                                        3999999999999999999999995  599999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy1913         522 FKIFKTYEEAGLE  534 (535)
Q Consensus       522 ~rv~~a~~~~G~~  534 (535)
                      +||++||+.||++
T Consensus       399 ~Rva~Am~~~G~~  411 (411)
T COG0334         399 ERVADAMKARGWY  411 (411)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999986

>PRK09414 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-121  Score=977.67  Aligned_cols=419  Identities=28%  Similarity=0.403  Sum_probs=392.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH  118 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H  118 (535)
                      ..+|+||+++..+|++|+++++  +.+         +   ...++++++|++|+|+|+|+|||+||||++++|+|||+||
T Consensus        19 ~~~~~~~~~~~~~~~~a~~~l~--~~~---------~---~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h   84 (445)
T PRK09414         19 PGQPEFHQAVREVLESLWPVLE--KNP---------E---YAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQF   84 (445)
T ss_pred             cCCchHHHHHHHHHHHHHHHhc--cCh---------h---hhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEe
Confidence            3678999999999999999997  311         0   1134599999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913         119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI  198 (535)
Q Consensus       119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  198 (535)
                      |+++||+||||||||+++.+|+.+||+||||||||+|||||||||||.+||+.+|+.||||++|+|+++|.+  +|||..
T Consensus        85 ~~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~--~iG~~~  162 (445)
T PRK09414         85 NSAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYR--HIGPDT  162 (445)
T ss_pred             cCCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHH--hcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997  899999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      |||||||||++++|+||+|+|+++.|+.    .|++||||+.+|||.+|.++|||||+++++++++      .+|.  ++
T Consensus       163 DipapDvgt~~~~M~~~~d~y~~~~~~~----~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~------~~~~--~l  230 (445)
T PRK09414        163 DVPAGDIGVGGREIGYLFGQYKRLTNRF----EGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLK------ARGD--SF  230 (445)
T ss_pred             CcCccccCCCHHHHHHHHHHHHhhcCcc----eEEEecCCcccCCCCCCCCcccHHHHHHHHHHHH------hcCC--Cc
Confidence            9999999999999999999999998864    3999999999999999999999999999996664      4564  58


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-CCcccCC---CCcccCC-CCc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-GTIKGYP---GTKSAPT-DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g~v~~~~---~a~~i~~-ell  353 (535)
                      +|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|+++++++ +++.+|+   +++.+++ ++|
T Consensus       231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~  308 (445)
T PRK09414        231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW  308 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc
Confidence            9999999999999999999999999999999999999999999  9999999999887 5888887   5567777 899


Q ss_pred             cccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS  430 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~  430 (535)
                      +++||||||||++|+||++||.++   +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||++++
T Consensus       309 ~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~  388 (445)
T PRK09414        309 SVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRL  388 (445)
T ss_pred             ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccc
Confidence            999999999999999999999999   89999999999999999999999999999999999999999999999999987


Q ss_pred             cccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy1913         431 SLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKL  510 (535)
Q Consensus       431 ~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~  510 (535)
                      +|       +++                                        +|+++|+++|.++|+++++++++++..+
T Consensus       389 ~w-------~~~----------------------------------------~V~~~l~~~m~~~~~~~~~~~~~~~~~~  421 (445)
T PRK09414        389 SW-------TFE----------------------------------------EVDARLHDIMKNIHHACVETAEEYGKPG  421 (445)
T ss_pred             ee-------cHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            55       653                                        2899999999999999999999997558


Q ss_pred             CHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         511 DLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       511 ~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +||+|||++||+||++||+.||+|
T Consensus       422 ~~r~aA~~~a~~rv~~a~~~rG~~  445 (445)
T PRK09414        422 NYVAGANIAGFVKVADAMLAQGVI  445 (445)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999987

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=100.00  E-value=1e-118  Score=952.41  Aligned_cols=417  Identities=28%  Similarity=0.404  Sum_probs=385.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH  118 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H  118 (535)
                      ..+|.|++.+...++.-..++                ++.+++.+++++|++|+|+|+|++||.||+|++++|+||||||
T Consensus        26 ~~~~ef~qa~~e~~~~~~~~~----------------~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqh   89 (454)
T PTZ00079         26 PNQPEFLQAFHEVMTSLKPLF----------------QKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQY   89 (454)
T ss_pred             CCChHHHHHHHHHHHHHHHHH----------------HhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEE
Confidence            446778888877666544443                3345566899999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913         119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI  198 (535)
Q Consensus       119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  198 (535)
                      |+++||+||||||||+++++|+++||++|||||||++||||||||||.+||+.+|+.|+||+||+|+.+|.+  +|||++
T Consensus        90 n~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~--~IGp~~  167 (454)
T PTZ00079         90 NSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYR--HIGPDT  167 (454)
T ss_pred             cCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997  899999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      ||||||+||++++|+||+++|+++.|..    ++++||||+.+|||.+|.+||||||+++++++++      .+|.  +|
T Consensus       168 DvpA~DvGt~~rem~~~~~~y~~~~~~~----~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~------~~~~--~l  235 (454)
T PTZ00079        168 DVPAGDIGVGGREIGYLFGQYKKLRNNF----EGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLK------KLND--SL  235 (454)
T ss_pred             ccchhhcCCCHHHHHHHHHHHHHHhCCC----CceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHH------HcCC--Cc
Confidence            9999999999999999999999998753    7999999999999999999999999999996665      4554  58


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH---HHHHHHc-CCcccCC----CCcccCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL---HTYKITK-GTIKGYP----GTKSAPT  350 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L---~~~~~~~-g~v~~~~----~a~~i~~  350 (535)
                      +|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|   .++++.+ +++..|+    +++.+++
T Consensus       236 ~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~G--ld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~  313 (454)
T PTZ00079        236 EGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNG--FTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG  313 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCC--CCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC
Confidence            9999999999999999999999999999999999999999999  999888   6667654 7777775    5778888


Q ss_pred             -CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                       ++|+++||||+|||++|+||.+||++|   +||+|+||||+|+|++|+++|++|||+|+||+++|||||++|||||+||
T Consensus       314 ~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn  393 (454)
T PTZ00079        314 KKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQN  393 (454)
T ss_pred             cCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhh
Confidence             999999999999999999999999988   9999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                      +++++|       ++|                                        +|+++|+++|.++|+++++++++|
T Consensus       394 ~~~~~W-------~~e----------------------------------------eV~~~L~~~M~~~~~~~~~~a~~~  426 (454)
T PTZ00079        394 AARLQW-------TAE----------------------------------------EVDEKLREIMKSIFEACVKYAEKY  426 (454)
T ss_pred             hcccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998755       664                                        399999999999999999999999


Q ss_pred             CCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         507 DNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       507 ~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +.++|||+|||++||.||++||..||++
T Consensus       427 ~~~~~~r~~A~i~~~~rva~Am~~~G~~  454 (454)
T PTZ00079        427 GGKSDLVAGANIAGFLKVADSMIEQGCV  454 (454)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7668999999999999999999999975

>PRK14031 glutamate dehydrogenase; Provisional

Probab=100.00  E-value=8e-119  Score=954.70  Aligned_cols=417  Identities=28%  Similarity=0.389  Sum_probs=386.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhh--hhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEE
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRR--NGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRC  116 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv  116 (535)
                      ..+|.|++++..+++.-..+++                +.+++  .+++++|++|+|+++|+|||+||+|++++|+|||+
T Consensus        15 ~~~~e~~q~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRv   78 (444)
T PRK14031         15 PNEPEYHQAVEEVLSTIEEEYN----------------KHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRV   78 (444)
T ss_pred             cCChHHHHHHHHHHHHHHHHHH----------------hChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEE
Confidence            3468899999988887666654                22233  56899999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCC
Q psy1913         117 HHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGP  196 (535)
Q Consensus       117 ~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp  196 (535)
                      |||+++||+||||||||+++++|+++||+||||||||++||||||||||.+||+.+|+.||||++|+|+.+|.+  +|||
T Consensus        79 qhn~~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~--~iGp  156 (444)
T PRK14031         79 QHNNAIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWR--HIGP  156 (444)
T ss_pred             EecCCCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHh--ccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996  9999


Q ss_pred             CCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCC
Q psy1913         197 GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP  276 (535)
Q Consensus       197 ~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~  276 (535)
                      ++|||||||||++++|+||+|+|++..++    .+|++||||+.+|||.+|.+||||||+++++++++      .+|+  
T Consensus       157 ~~dipApDvgt~~~~M~~i~d~y~~~~~~----~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~------~~g~--  224 (444)
T PRK14031        157 ETDVPAGDIGVGGREVGFMFGMYKKLSHE----FTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLK------TKGT--  224 (444)
T ss_pred             CCccCccccCCCHHHHHHHHHHHHhhcCC----cceEECCCccccCCCCCCCcccHHHHHHHHHHHHH------hcCC--
Confidence            99999999999999999999999998875    48999999999999999999999999999996654      5676  


Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH---HHHHH-cCCcccCC---CCcccC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH---TYKIT-KGTIKGYP---GTKSAP  349 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~---~~~~~-~g~v~~~~---~a~~i~  349 (535)
                      +|+|+||+||||||||+++|++|++.|++||+|||++|+||||+|  ||+++|.   +++.. ++++.+|+   +++.++
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~G--ld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDG--IDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            589999999999999999999999999999999999999999999  9999986   55555 57788876   567777


Q ss_pred             C-CCccccceEEeeccccccccccccccccce---EEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913         350 T-DIMFDKVDILVPAAIEKVIRKSNADKVQAK---IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK  425 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~~~~It~~na~~i~Ak---iIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q  425 (535)
                      + ++|+.+||||+|||++|+||.+||++|+|+   +|+||||+|+||+|+++|++|||+++||+++||||||+|||||+|
T Consensus       303 ~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~q  382 (444)
T PRK14031        303 GARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQ  382 (444)
T ss_pred             CcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhc
Confidence            7 899999999999999999999999999986   999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK  505 (535)
Q Consensus       426 n~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~  505 (535)
                      |+++++|       +++                                        +|+++|+++|.++|++|++++++
T Consensus       383 n~~~~~W-------~~e----------------------------------------eV~~~L~~~m~~~~~~v~~~~~~  415 (444)
T PRK14031        383 NSIKLSW-------SSE----------------------------------------EVDEKLKSIMKNIHEACVQYGTE  415 (444)
T ss_pred             cccccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998755       664                                        39999999999999999999999


Q ss_pred             cCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         506 SDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       506 ~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      ++.++|||+|||++||+||++||+.||+|
T Consensus       416 ~~~~~~~r~aA~~~a~~rva~a~~~~G~~  444 (444)
T PRK14031        416 ADGYVNYVKGANVAGFMKVAKAMMAQGIV  444 (444)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            85458999999999999999999999975

>KOG2250|consensus

Probab=100.00  E-value=5.6e-118  Score=935.48  Aligned_cols=491  Identities=41%  Similarity=0.667  Sum_probs=464.2

Q ss_pred             CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHhccchhhhhhhh-hcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcC
Q psy1913          26 GHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRA-RKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRD  104 (535)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d  104 (535)
                      -|++++..+++  +++|.|+++|+.++..++....+.+.+++.. +.+++++|.++...|+.+|..|+|.++|++|+.+|
T Consensus        10 ~~~~~~~~k~~--~~~p~~~~~v~~~~~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~Il~~l~p~~~~i~~~~p~~~d   87 (514)
T KOG2250|consen   10 AHQYHNSTKDM--ADSPTFLKMVESMYAPAAIEFQQALAEDVLSLELSSKFEKSPLYTAILFRLDPPERVIKFRVPIPRD   87 (514)
T ss_pred             HHHhhhccccc--ccChHHHHHHHhhccccchhhhhhhHHHHhcchhhhhhhhhhHhhhhhhhcCccceeEEEEeceecC
Confidence            46777788888  8999999999999999998888888777776 68899999999999999999999999999999999


Q ss_pred             CCceEEeeeeEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHH
Q psy1913         105 SGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKF  184 (535)
Q Consensus       105 ~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f  184 (535)
                      +|..+++.|||+||+.+|||+||||||||+|++|++++||+.||||||+++||||||||||.+||+.+|..|+||+||+|
T Consensus        88 ~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGGi~~dPk~~s~nEi~r~~~~f  167 (514)
T KOG2250|consen   88 DGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGGILIDPKGKSDNEIERITRRF  167 (514)
T ss_pred             CceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCccccCccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHh
Q psy1913         185 ALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVN  264 (535)
Q Consensus       185 ~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~  264 (535)
                      +++|.+  +|||++|+|||||||+++||.||+++|++..|+    +++|+||||+.+|||++|.+||||||+++++.+++
T Consensus       168 ~~el~~--~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~----~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~  241 (514)
T KOG2250|consen  168 TDELID--IIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGH----WKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILN  241 (514)
T ss_pred             HHHHHH--HcCCCCCCCccccccCcchhhhhHHHHHHhhcc----cceeeeCCCCccCCccCcccccchhHHHHHHHHHH
Confidence            999997  999999999999999999999999999999986    68999999999999999999999999999998887


Q ss_pred             cHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC
Q psy1913         265 NEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG  344 (535)
Q Consensus       265 ~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~  344 (535)
                      +      +++..+++|+||+||||||||++++++|++.|++||+|+|++|+||||+|  ||+.+|.+++++++++.+|++
T Consensus       242 ~------~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~G--id~~eL~~~~~~k~~i~~f~~  313 (514)
T KOG2250|consen  242 D------ANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDG--IDIEELLDLADEKKTIKSFDG  313 (514)
T ss_pred             h------ccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCC--CCHHHHHHHHHhhcccccccc
Confidence            5      34456799999999999999999999999999999999999999999999  999999999999999999998


Q ss_pred             CcccCC--------CCccccceEEeeccccccccccccccccce---EEEecCCCCCCHHHHHHHHhCCceeeccccccc
Q psy1913         345 TKSAPT--------DIMFDKVDILVPAAIEKVIRKSNADKVQAK---IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       345 a~~i~~--------ell~~~~DILiPaA~~~~It~~na~~i~Ak---iIvEgAN~p~T~eA~~iL~~rGI~viPD~laNa  413 (535)
                      ++...+        .+|..+||||+|||.+|+||.+||..|+|+   +||||||+|+||||+++|+++||+++||+.||+
T Consensus       314 ~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i~Pd~~aNa  393 (514)
T KOG2250|consen  314 AKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLIIPDIYANA  393 (514)
T ss_pred             ccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEEechhhccC
Confidence            875432        567889999999999999999999999876   999999999999999999999999999999999


Q ss_pred             cCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHH
Q psy1913         414 GGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQ  493 (535)
Q Consensus       414 GGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~  493 (535)
                      |||+||||||+||+||++.|+|++.|+++.+...|..|.+.+.+.+++ ....+...+.+.++++++.|+|+..|...|.
T Consensus       394 GGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~-~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~  472 (514)
T KOG2250|consen  394 GGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGK-ANLEPAAEFKDRIQGTSEKDLVHGALIATFN  472 (514)
T ss_pred             CCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccC-cccchHHHhhhhhcCCCchHHhhhhHHHHHH
Confidence            999999999999999999999999999999999999999888776554 3456778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         494 RAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       494 ~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +.-+.+.+....++. +|||+|||..+|+||...|...|+.
T Consensus       473 kva~ai~~~g~~~~~-ldlR~a~~~~~~ekiy~~~~~s~~~  512 (514)
T KOG2250|consen  473 KVARAITDQGDVWNL-LDLRTAAYVNAIEKIYLVYNESGYT  512 (514)
T ss_pred             HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999987 9999999999999999999998863

>PTZ00324 glutamate dehydrogenase 2; Provisional

Probab=100.00  E-value=1.7e-79  Score=693.69  Aligned_cols=398  Identities=21%  Similarity=0.240  Sum_probs=346.3

Q ss_pred             hhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecC-----------CCHHHHHHHHHHh
Q psy1913          79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALD-----------VNPDEVKALAALM  147 (535)
Q Consensus        79 ~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~-----------vt~dEv~aLA~~M  147 (535)
                      +.++.+++.|..|++.+.|.||+    |  ..|+|||++|+..   ++|||||||.           +++|||.+||+||
T Consensus       460 rldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tq  530 (1002)
T PTZ00324        460 RLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQ  530 (1002)
T ss_pred             eCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHH
Confidence            45788899999999999999999    5  8999999999998   9999999998           8899999999999


Q ss_pred             hhhhccccCCCCcceEEEecCCCCCCH---HHHHHHHHHHHHHHhccCccCCCCcc-----------cCCCCCCChhhHH
Q psy1913         148 TYKNSCSNVPFGGAKGGIRIDPSKYNN---RELERITRKFALELIKKNYVGPGIDV-----------PAPDYNTSAREMS  213 (535)
Q Consensus       148 T~K~Al~~lP~GGaKGgI~~dP~~~s~---~Eler~~r~f~~~L~~~~~iGp~~di-----------papDvgT~~~~Ma  213 (535)
                      |||||  +||+|||||||.+||+.++.   .|+++++|+|+++|.+  +|||+.||           ||||+||+++.|+
T Consensus       531 t~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlD--li~p~~dIVd~~~~de~l~~aPD~ntta~~md  606 (1002)
T PTZ00324        531 LLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLD--VMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMD  606 (1002)
T ss_pred             HHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHH--hcCCCcccccccCCccccccCCCCCCCHHHHH
Confidence            99999  99999999999999999887   8999999999999997  89999998           9999999999999


Q ss_pred             HHHHHHhhHhCCCccCCCceEecccCcCCCCCCCC-CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc--ccc
Q psy1913         214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRE-SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG--FGN  290 (535)
Q Consensus       214 wi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~-~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG--fGn  290 (535)
                      || ++|++.+|+.  .+++++||||+.+||+.++. ++||+||+.+++      ++++++|++  .++.||++||  ||+
T Consensus       607 wa-~~~s~~rG~~--~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~------~~~~~lgid--~~~~Tv~~~Ggp~GD  675 (1002)
T PTZ00324        607 WA-ALHAKKRGYP--FWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVT------GILEKLGLN--EEEVTKFQTGGPDGD  675 (1002)
T ss_pred             HH-HHHHHHcCCC--CCCCEEeCCCcccCCcCCCcCcccchhHHHHHH------HHHHHcCCC--ccCCEEEEECCCCch
Confidence            99 8999999975  45899999999999999998 999999999999      556678985  5899999999  999


Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC---------------------CCccc-
Q psy1913         291 VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP---------------------GTKSA-  348 (535)
Q Consensus       291 VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~---------------------~a~~i-  348 (535)
                      ||++.++++.   +|||||+|++|++|||+|  ||+++|.++++.++++.+|+                     +++.+ 
T Consensus       676 VGgN~~lls~---~klVAv~D~~G~~~DP~G--Ld~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~  750 (1002)
T PTZ00324        676 LGSNELLLSK---EKTVGIVDGSGVLHDPEG--LNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVE  750 (1002)
T ss_pred             HHHHHHHHhC---CEEEEEEcCCCEEECCCC--CCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceec
Confidence            9999999864   799999999999999999  99999999999988888552                     22222 


Q ss_pred             ----CC-CC---ccccceEEeeccc-ccccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceeeccccc
Q psy1913         349 ----PT-DI---MFDKVDILVPAAI-EKVIRKSNA--------DKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFA  411 (535)
Q Consensus       349 ----~~-el---l~~~~DILiPaA~-~~~It~~na--------~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~la  411 (535)
                          .. ++   +..+|||||||+. +++||++|+        .+++||+||||||+|+||+|+.+|++|||+|+||+++
T Consensus       751 ~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~la  830 (1002)
T PTZ00324        751 SGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASA  830 (1002)
T ss_pred             cccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchh
Confidence                12 33   4789999999999 999999999        7899999999999999999999999999999999999


Q ss_pred             cccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHH
Q psy1913         412 NAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHS  491 (535)
Q Consensus       412 NaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~  491 (535)
                      |+|||+||||||+||++          .+++...+++      .-     +-...++..+.++++      +|+++|++.
T Consensus       831 NsGGV~~S~~Evl~~l~----------l~d~ef~~~m------~~-----~~~~~~~~f~~~yv~------eV~~~L~~~  883 (1002)
T PTZ00324        831 NKGGVTSSSLEVLAALA----------LSDEEFAEHM------CV-----KDATDAPEFYKKYVK------EILDRIEEN  883 (1002)
T ss_pred             cCCCcEeeHHHHHhccc----------cchhhhhhhh------cc-----cccCCccchhHHHHH------HHHHHHHHH
Confidence            99999999999999986          2443211111      00     001123455555544      799999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHhHH--HHHHHHHHHHHcCCC
Q psy1913         492 MQRAGRDILEYAEKSDNKLDLRNAAYCS--ALFKIFKTYEEAGLE  534 (535)
Q Consensus       492 m~~a~~~v~~~a~~~~~~~~lR~AAy~~--ai~rv~~a~~~~G~~  534 (535)
                      |..+|+.||+.+++.+  +++|+||-.+  .|.++.+.+...-+|
T Consensus       884 a~~ef~~i~~~~~~~~--~~~r~asd~lS~~In~l~~~l~~s~l~  926 (1002)
T PTZ00324        884 ARLEFNAIWREELRTG--KPRCLLADVLSRKIVRLRADILSSDLW  926 (1002)
T ss_pred             HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999988874  8999999776  477777777654444

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=100.00  E-value=3.8e-71  Score=553.41  Aligned_cols=242  Identities=26%  Similarity=0.286  Sum_probs=224.0

Q ss_pred             ecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCc
Q psy1913         235 TGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT  314 (535)
Q Consensus       235 TGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G  314 (535)
                      ||||+.+|||.||.++|||||+++++++++      .++.  +++|+||+||||||||+++|++|++.|+|||+|||++|
T Consensus         1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~------~~~~--~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G   72 (254)
T cd05313           1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLK------DRNE--TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKG   72 (254)
T ss_pred             CCCCCcCCCCCCCCchhHHHHHHHHHHHHH------hcCC--CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            899999999999999999999999996665      4553  68999999999999999999999999999999999999


Q ss_pred             eEeCCCCCCCCHHHH---HHHHHHcCC-cccC----CCCcccCC-CCccccceEEeeccccccccccccccc---cceEE
Q psy1913         315 AIVPDKGTEINYKDL---HTYKITKGT-IKGY----PGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKV---QAKII  382 (535)
Q Consensus       315 ~iynp~G~dLDi~~L---~~~~~~~g~-v~~~----~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i---~AkiI  382 (535)
                      ++|||+|  ||+++|   .++++++++ +..|    ++++.+++ ++|+++||||+|||++++||.+||++|   +||+|
T Consensus        73 ~i~~~~G--ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I  150 (254)
T cd05313          73 YVYDPDG--FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYV  150 (254)
T ss_pred             eEECCCC--CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEE
Confidence            9999999  999988   556666665 4554    36788888 999999999999999999999999999   89999


Q ss_pred             EecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhh
Q psy1913         383 VEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK  462 (535)
Q Consensus       383 vEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~  462 (535)
                      +||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|       +++                    
T Consensus       151 ~EgAN~p~t~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w-------~~e--------------------  203 (254)
T cd05313         151 AEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSW-------TAE--------------------  203 (254)
T ss_pred             EeCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccC-------CHH--------------------
Confidence            99999999999999999999999999999999999999999999999766       653                    


Q ss_pred             hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCC
Q psy1913         463 IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL  533 (535)
Q Consensus       463 ~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~  533 (535)
                                          +|+++|+++|.++|++|++++++++.++|||+|||++||+||++||+.||+
T Consensus       204 --------------------~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~a~~rv~~a~~~rG~  254 (254)
T cd05313         204 --------------------EVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIAGFLKVADAMLAQGV  254 (254)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence                                399999999999999999999999755899999999999999999999994

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=5.6e-62  Score=485.98  Aligned_cols=233  Identities=42%  Similarity=0.671  Sum_probs=215.9

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCC
Q psy1913         242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG  321 (535)
Q Consensus       242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G  321 (535)
                      |||.+|.++|||||+++++++++      .+|.. +++|+||+||||||||+++|++|++.|++||+|||++|+||||+|
T Consensus         1 GGs~~~~~aTg~GV~~~~~~~~~------~~~~~-~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G   73 (244)
T PF00208_consen    1 GGSGGRSEATGYGVAYAIEAALE------HLGGD-SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG   73 (244)
T ss_dssp             TCHTTTTTHHHHHHHHHHHHHHH------HTTCH-SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE
T ss_pred             CCCCCCCcchHHHHHHHHHHHHH------HcCCC-CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC
Confidence            89999999999999999996654      56754 589999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCC-cccCC-----CCcccCC--CCccccceEEeeccccccccccccc-ccc--ceEEEecCCCCC
Q psy1913         322 TEINYKDLHTYKITKGT-IKGYP-----GTKSAPT--DIMFDKVDILVPAAIEKVIRKSNAD-KVQ--AKIIVEAANGPL  390 (535)
Q Consensus       322 ~dLDi~~L~~~~~~~g~-v~~~~-----~a~~i~~--ell~~~~DILiPaA~~~~It~~na~-~i~--AkiIvEgAN~p~  390 (535)
                        ||+++|.++++++++ +..|+     +++.+++  ++|+++||||+|||++++||++|++ .|+  ||+||||||+|+
T Consensus        74 --ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~  151 (244)
T PF00208_consen   74 --LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPL  151 (244)
T ss_dssp             --EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSB
T ss_pred             --chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhc
Confidence              999999999999998 99887     5677776  7999999999999999999999999 999  999999999999


Q ss_pred             CHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhh
Q psy1913         391 TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAM  470 (535)
Q Consensus       391 T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  470 (535)
                      ||+|+++|++|||+|+||+++|+||||+|||||+||+++++|       +++                            
T Consensus       152 t~~a~~~L~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~-------~~~----------------------------  196 (244)
T PF00208_consen  152 TPEADEILRERGILVIPDFLANAGGVIVSYFEWLQNLQGLFW-------TEE----------------------------  196 (244)
T ss_dssp             SHHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSST-------THH----------------------------
T ss_pred             cHHHHHHHHHCCCEEEcchhhcCCCeEeehhhhcchhhhhhh-------hHH----------------------------
Confidence            999999999999999999999999999999999999998755       664                            


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcC
Q psy1913         471 YEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG  532 (535)
Q Consensus       471 ~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G  532 (535)
                                  +|.++|+++|.++|++|++.|++++  +++|+|||++|++||+++|+.||
T Consensus       197 ------------~v~~~l~~~m~~~~~~v~~~a~~~~--~~~~~aA~~~A~~rv~~a~~~rG  244 (244)
T PF00208_consen  197 ------------EVFEKLEEIMDRAFKRVLERAEEEG--ISLRQAAYILAFERVAAAMKLRG  244 (244)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhcC
Confidence                        2889999999999999999999996  79999999999999999999998

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=100.00  E-value=2.3e-58  Score=455.51  Aligned_cols=226  Identities=45%  Similarity=0.715  Sum_probs=212.8

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCC
Q psy1913         242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG  321 (535)
Q Consensus       242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G  321 (535)
                      |||.+|.++|||||++++++++++      ++  .+++++||+||||||||+++|++|.+.|++||+|+|++|++|||+|
T Consensus         1 gG~~~~~~~Tg~Gv~~~~~~~~~~------~~--~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~G   72 (227)
T cd01076           1 GGSLGREEATGRGVAYATREALKK------LG--IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDG   72 (227)
T ss_pred             CCCCCCCccchHHHHHHHHHHHHh------cC--CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC
Confidence            799999999999999999977764      44  3689999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHh
Q psy1913         322 TEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK  400 (535)
Q Consensus       322 ~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~  400 (535)
                        ||+++|+++++++|++.+|++++.+++ +++..+||||||||++++||++|+++++||+|+||||+|+||+|+++|++
T Consensus        73 --ld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~  150 (227)
T cd01076          73 --LDVPALLAYKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHE  150 (227)
T ss_pred             --CCHHHHHHHHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHH
Confidence              999999999999999999998888888 89999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccch
Q psy1913         401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATE  480 (535)
Q Consensus       401 rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e  480 (535)
                      |||+|+||+++|+||||+|||||+||++++.|       +++                                      
T Consensus       151 rGi~~~PD~~aNaGGvi~s~~E~~~~~~~~~~-------~~~--------------------------------------  185 (227)
T cd01076         151 RGVLVVPDILANAGGVTVSYFEWVQNLQGFYW-------DEE--------------------------------------  185 (227)
T ss_pred             CCCEEEChHHhcCcchhhhHHHHhhhhccCcC-------CHH--------------------------------------
Confidence            99999999999999999999999999998755       553                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHH
Q psy1913         481 KDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFK  526 (535)
Q Consensus       481 ~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~  526 (535)
                        +|.++|++.|.+++.++++.+++++  +++|+|||..|++||++
T Consensus       186 --~v~~~l~~~i~~~~~~v~~~a~~~~--~~~~~aA~~~a~~rl~~  227 (227)
T cd01076         186 --EVNSRLETKMREAFEAVLETAEKYG--VDLRTAAYVLALERVAE  227 (227)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHHHHHHHhhC
Confidence              2789999999999999999999995  89999999999999963

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=6.6e-58  Score=449.57  Aligned_cols=216  Identities=36%  Similarity=0.525  Sum_probs=202.8

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      ||||||+++++++++      +++.  +|+|+||+||||||||+++|++|++.|++||+|||++|++||| |  ||++++
T Consensus         1 aTg~Gv~~~~~~~~~------~~~~--~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-G--ld~~~l   69 (217)
T cd05211           1 ATGYGVVVAMKAAMK------HLGD--SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-G--ITTEEL   69 (217)
T ss_pred             CchhHHHHHHHHHHH------HcCC--CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-C--CCHHHH
Confidence            799999999996654      5663  6899999999999999999999999999999999999999999 9  999999


Q ss_pred             HHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913         330 HTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD  408 (535)
                      ++++++.+++..|+.++.+++ ++|..+||||||||++|+||++|+.+++||+|+|+||+|+|++++++|++|||+|+||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd  149 (217)
T cd05211          70 INYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPD  149 (217)
T ss_pred             HHHHHhhCCccccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEECh
Confidence            999999999999987777777 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHH
Q psy1913         409 IFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSL  488 (535)
Q Consensus       409 ~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L  488 (535)
                      +++|+|||++|||||+||+++++|       +++                                        +|.++|
T Consensus       150 ~~~NaGGvi~s~~E~~q~~~~~~w-------~~~----------------------------------------~v~~~l  182 (217)
T cd05211         150 IVANAGGVIVSYFEWVQNLQRLSW-------DAE----------------------------------------EVRSKL  182 (217)
T ss_pred             HHhcCCCeEeEHHHhcCCccccCC-------CHH----------------------------------------HHHHHH
Confidence            999999999999999999998755       664                                        389999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHH
Q psy1913         489 THSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF  525 (535)
Q Consensus       489 ~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~  525 (535)
                      ++.|.++|++|++.+++++  +|+|+|||+.|++||+
T Consensus       183 ~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~a~~rva  217 (217)
T cd05211         183 EQVMTDIHNGVFAISERDG--VTMRAAANILAFERIA  217 (217)
T ss_pred             HHHHHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHhC
Confidence            9999999999999999995  8999999999999985

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=100.00  E-value=1.4e-46  Score=342.88  Aligned_cols=130  Identities=42%  Similarity=0.783  Sum_probs=124.2

Q ss_pred             CCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCC
Q psy1913          91 YSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPS  170 (535)
Q Consensus        91 p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~  170 (535)
                      |+|+++|+|||.+|||....|+|||+|||+++||+||||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus         1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~   80 (131)
T PF02812_consen    1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK   80 (131)
T ss_dssp             -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred             CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhH
Q psy1913         171 KYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKT  222 (535)
Q Consensus       171 ~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~  222 (535)
                      .+|..|+|+++|+|+++|.+  +|||++|||||||||+++||+||+|+|+++
T Consensus        81 ~~s~~e~e~l~r~f~~~l~~--~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~  130 (131)
T PF02812_consen   81 DLSDNERERLTRRFGRALSP--FIGPGRDIPAPDVGTGERDMAWIADEYRRV  130 (131)
T ss_dssp             GS-HHHHHHHHHHHHHHHGG--GSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHH--HhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence            99999999999999999997  999999999999999999999999999875

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=100.00  E-value=5.3e-42  Score=332.73  Aligned_cols=196  Identities=26%  Similarity=0.325  Sum_probs=172.5

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK  327 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~  327 (535)
                      +.+|||||++++++++++.     ++ ..+++|++|+|||||+||+++|+.|.+.|++|++             +|.+.+
T Consensus         2 s~aTg~Gv~~~~~~~~~~~-----~~-~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv-------------~D~~~~   62 (200)
T cd01075           2 SPPTAYGVFLGMKAAAEHL-----LG-TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV-------------ADINEE   62 (200)
T ss_pred             CChhHHHHHHHHHHHHHHh-----cC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EcCCHH
Confidence            5799999999999776541     23 3468999999999999999999999999999996             457777


Q ss_pred             HHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCC-HHHHHHHHhCCcee
Q psy1913         328 DLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLI  405 (535)
Q Consensus       328 ~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T-~eA~~iL~~rGI~v  405 (535)
                      ++.++++..       +++.++. +++..+|||++|||++++||.+|+++++|++|+|+||+|+| ++++++|++|||+|
T Consensus        63 ~~~~~~~~~-------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~  135 (200)
T cd01075          63 AVARAAELF-------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILY  135 (200)
T ss_pred             HHHHHHHHc-------CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEE
Confidence            887777653       3455666 78888999999999999999999999999999999999999 99999999999999


Q ss_pred             eccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHH
Q psy1913         406 IPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQ  485 (535)
Q Consensus       406 iPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~  485 (535)
                      +||+++|+|||++|||||+|+.            ++                                         +|.
T Consensus       136 ~Pd~~~NaGGv~~~~~e~~~~~------------~~-----------------------------------------~~~  162 (200)
T cd01075         136 APDYVVNAGGLINVADELYGGN------------EA-----------------------------------------RVL  162 (200)
T ss_pred             eCceeeeCcCceeehhHHhCCc------------HH-----------------------------------------HHH
Confidence            9999999999999999999852            11                                         267


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHH
Q psy1913         486 SSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF  525 (535)
Q Consensus       486 ~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~  525 (535)
                      ++|+.+ .+++.+|++.+++++  +++|+|||.+|++||+
T Consensus       163 ~~~~~~-~~~~~~v~~~a~~~~--~~~~~aA~~~a~~r~~  199 (200)
T cd01075         163 AKVEAI-YDTLLEIFAQAKQDG--ITTLEAADRMAEERIA  199 (200)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhC--cCHHHHHHHHHHHHhc
Confidence            788777 789999999999985  8999999999999985

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Probab=99.96  E-value=4.8e-29  Score=218.52  Aligned_cols=100  Identities=44%  Similarity=0.621  Sum_probs=92.5

Q ss_pred             ceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMS  436 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~  436 (535)
                      ||||+|||++++||++|+++|+||+|+||||+|+|++|+++|++|||+|+||+++|+|||++||+||.||+++       
T Consensus         3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~-------   75 (102)
T smart00839        3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR-------   75 (102)
T ss_pred             cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998752       


Q ss_pred             cccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         437 FGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       437 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                         +++                                        +|..++.+.|.+++.++++.++++
T Consensus        76 ---~~e----------------------------------------~v~~~~~~~i~~~~~~v~~~a~~~  102 (102)
T smart00839       76 ---TAE----------------------------------------EVFTDLSEIMRNALEEIFETAQKY  102 (102)
T ss_pred             ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence               232                                        388888999999999999998763

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.

>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.4e-21  Score=224.85  Aligned_cols=290  Identities=22%  Similarity=0.265  Sum_probs=205.7

Q ss_pred             eeeEEEecCCCCCCCCCeeeecCCCH---HHHHHHHHHhhhhhccccCCCCcceEEEecCC--CCCCHHHHH----HHHH
Q psy1913         112 QCYRCHHCTHKSPTKGGIRYALDVNP---DEVKALAALMTYKNSCSNVPFGGAKGGIRIDP--SKYNNRELE----RITR  182 (535)
Q Consensus       112 ~gyRv~H~~~~GPakGGiR~~p~vt~---dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP--~~~s~~Ele----r~~r  182 (535)
                      +-++.+|-..+-.|.||+|++ +...   +|++.|+..+..|||  .||-+|||||+.+.+  ..-++.|++    .-++
T Consensus       783 ~~vEGvHLRFg~VARGGLRws-DR~~D~rtEvlgLvKAQqvKNa--vIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk  859 (1592)
T COG2902         783 PEVEGVHLRFGPVARGGLRWS-DRNQDFRTEVLGLVKAQQVKNA--VIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYK  859 (1592)
T ss_pred             CcceEEEeecccccccccccc-ccchhHHHHHHHHHHHHHhcCC--cccccCCcceEecccCCCCCchHHHHHhhHHHHH
Confidence            345678888888899999998 5554   599999999999999  699999999999875  445666653    2345


Q ss_pred             HHHHHHhcc--Ccc-----CC----------CCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCC
Q psy1913         183 KFALELIKK--NYV-----GP----------GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIR  245 (535)
Q Consensus       183 ~f~~~L~~~--~~i-----Gp----------~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~  245 (535)
                      .|++.|..-  ++|     -|          ..-|.|||-||-. .-+|.-. .++.+|        +.-||....|||.
T Consensus       860 ~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAt-FsD~AN~-vA~~~~--------fwl~DAFaSGgS~  929 (1592)
T COG2902         860 AFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTAT-FSDIANS-VAREYG--------FWLGDAFASGGSA  929 (1592)
T ss_pred             HHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCccc-HHHHHHH-HHHHhC--------CChhhhhhcCCCC
Confidence            666655431  111     12          1126799999854 3344321 222233        3345555666666


Q ss_pred             CCC----CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEe
Q psy1913         246 GRE----SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIV  317 (535)
Q Consensus       246 gr~----~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iy  317 (535)
                      |..    +.|++|++++++..+      +.+|++  ++...+.+.|-    |.|+..-  .|...--++||+.|+++..+
T Consensus       930 GydHK~mGITarGaweaVkrhF------relg~d--~Q~~~fTvvgiGdmsGDVfgNg--MLLS~~irLiAAfDhrhIFi  999 (1592)
T COG2902         930 GYDHKKMGITARGAWEAVKRHF------RELGLD--TQTSPFTVVGIGDMSGDVFGNG--MLLSKHIRLIAAFDHRHIFI  999 (1592)
T ss_pred             CCCccccccchhhHHHHHHHHH------HHhccc--CCCCceEEEeeCCCCccccccc--eeccccceeeEEecCCceee
Confidence            544    899999999999444      567874  67777777775    4455443  34555667999999999999


Q ss_pred             CCCCCCCCHHHHHH---HHHHcCCcccCCCC------------------------------cccCC-C----C-------
Q psy1913         318 PDKGTEINYKDLHT---YKITKGTIKGYPGT------------------------------KSAPT-D----I-------  352 (535)
Q Consensus       318 np~G~dLDi~~L~~---~~~~~g~v~~~~~a------------------------------~~i~~-e----l-------  352 (535)
                      ||+ .|+|...+.+   ....+.++.+|...                              +.+++ +    |       
T Consensus      1000 DP~-pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDL 1078 (1592)
T COG2902        1000 DPN-PDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDL 1078 (1592)
T ss_pred             CCC-CCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccChHHHHHHHHcCchhh
Confidence            997 2488877766   33344455555310                              01112 1    2       


Q ss_pred             -ccccceEEeeccc-ccccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHh
Q psy1913         353 -MFDKVDILVPAAI-EKVIRKSNA--------DKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFE  422 (535)
Q Consensus       353 -l~~~~DILiPaA~-~~~It~~na--------~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~E  422 (535)
                       |.-..|.+|||.. .|.+..+||        .+++||+|+||||..+|+.+.-.|..+|..+.-|++.|+|||.+|..|
T Consensus      1079 Lw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~E 1158 (1592)
T COG2902        1079 LWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHE 1158 (1592)
T ss_pred             hccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCCCcccchh
Confidence             3344678899998 677777665        456899999999999999999999999999999999999999999999


Q ss_pred             hhh
Q psy1913         423 WLK  425 (535)
Q Consensus       423 w~q  425 (535)
                      ..-
T Consensus      1159 Vni 1161 (1592)
T COG2902        1159 VNI 1161 (1592)
T ss_pred             hhh
Confidence            753

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=99.82  E-value=1.8e-18  Score=206.07  Aligned_cols=312  Identities=20%  Similarity=0.235  Sum_probs=223.1

Q ss_pred             hhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCC--CHHHHHHHHHHhhhhhccccC
Q psy1913          79 LRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDV--NPDEVKALAALMTYKNSCSNV  156 (535)
Q Consensus        79 ~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~v--t~dEv~aLA~~MT~K~Al~~l  156 (535)
                      +.++..+.-+..|..-.++.+.-          .-+..+|-...--|.||+|++...  -..||+.|+..+..|||  .|
T Consensus       698 Kldp~~l~~~p~P~P~~eifV~s----------~~~eGvHLR~g~VARGGlRwSdR~eDfRtEvlgL~kaQ~vKNa--vI  765 (1528)
T PF05088_consen  698 KLDPSFLPDLPEPRPYFEIFVYS----------PRFEGVHLRFGDVARGGLRWSDRPEDFRTEVLGLVKAQQVKNA--VI  765 (1528)
T ss_pred             EEcHHHcCCCCCCCCcEEEEEEC----------CceEEEEccccccccCcccccCCHHHHHHHHHHHHHHHHhcCC--cc
Confidence            34566677777777666654322          234578888888899999996432  13699999999999999  79


Q ss_pred             CCCcceEEEecCCCCC--CHH----HHHHHHHHHHHHHhcc-------CccCC---------CCc-ccCCCCCCChhhHH
Q psy1913         157 PFGGAKGGIRIDPSKY--NNR----ELERITRKFALELIKK-------NYVGP---------GID-VPAPDYNTSAREMS  213 (535)
Q Consensus       157 P~GGaKGgI~~dP~~~--s~~----Eler~~r~f~~~L~~~-------~~iGp---------~~d-ipapDvgT~~~~Ma  213 (535)
                      |-||||||+.++....  +..    |....++.|+++|.+-       .++.|         +-| |-|.|-||..  +.
T Consensus       766 vp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTAt--fS  843 (1528)
T PF05088_consen  766 VPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTAT--FS  843 (1528)
T ss_pred             cCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcch--HH
Confidence            9999999999875433  444    3345678899999863       12223         223 6799999942  22


Q ss_pred             HHHHHHhhHhCCCccCCCceEecccCcCCCCCCCC----CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc
Q psy1913         214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRE----SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG  289 (535)
Q Consensus       214 wi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~----~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG  289 (535)
                      =++.+-+.-+        |+.-|+-...|||.|..    +.|++|.+.+++..+      +.+|++  +....+.|+|.|
T Consensus       844 D~AN~ia~~~--------gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHF------relg~D--~q~~~fTvvGiG  907 (1528)
T PF05088_consen  844 DIANEIAAEY--------GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHF------RELGID--IQTDPFTVVGIG  907 (1528)
T ss_pred             HHHHHHHHHc--------CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHH------HHhCCC--cCCCceEEEEec
Confidence            2222222222        45678888999999987    899999999999555      457874  577788888876


Q ss_pred             cHHHHH--HHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH----HHHHcC-CcccCCC-------------Cc---
Q psy1913         290 NVGFHA--ARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT----YKITKG-TIKGYPG-------------TK---  346 (535)
Q Consensus       290 nVG~~~--A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~----~~~~~g-~v~~~~~-------------a~---  346 (535)
                      ..+.-+  --.|.-...|+||..|+..-..||+-   |++.-.+    +++..+ +..+|..             ++   
T Consensus       908 DMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P---D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~  984 (1528)
T PF05088_consen  908 DMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP---DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIP  984 (1528)
T ss_pred             CCCccccccchhcccceeEEEecCcceeecCcCC---ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCC
Confidence            665422  23566778899999999999999995   4443222    111112 3444420             11   


Q ss_pred             --------------ccCC-C----CccccceEEeeccccccccc-----------------cccccccceEEEecCCCCC
Q psy1913         347 --------------SAPT-D----IMFDKVDILVPAAIEKVIRK-----------------SNADKVQAKIIVEAANGPL  390 (535)
Q Consensus       347 --------------~i~~-e----ll~~~~DILiPaA~~~~It~-----------------~na~~i~AkiIvEgAN~p~  390 (535)
                                    .+++ +    ||..++|+|.--.++.-|-.                 -|+..++||+|+||+|..+
T Consensus       985 lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~ 1064 (1528)
T PF05088_consen  985 LSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGL 1064 (1528)
T ss_pred             CCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEeccccccc
Confidence                          2334 3    57899999998877665543                 2566779999999999999


Q ss_pred             CHHHHHHHHhCCceeeccccccccCcchhhHhh
Q psy1913         391 TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEW  423 (535)
Q Consensus       391 T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew  423 (535)
                      |..++--+..+|..+--|++-||+||-+|-.|.
T Consensus      1065 TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1065 TQRGRIEYALNGGRINTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred             chHHHHHHHHcCCccchhhhcccCCCcCccchh
Confidence            999998899999999999999999999999996

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.21  E-value=1.2e-11  Score=129.40  Aligned_cols=125  Identities=18%  Similarity=0.237  Sum_probs=93.2

Q ss_pred             cEEEEEccccHHHHHHHHHHH--------CC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC---Ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR--------GR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG---TKS  347 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e--------~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~---a~~  347 (535)
                      .+|+||||||||++++++|.+        .|  .+|++|+|++|++|||+|  ||++++.+++++++.+..|+.   ...
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccccccC
Confidence            589999999999999999987        46  799999999999999999  999999999999988877752   223


Q ss_pred             cCC-CCc-cccceEEeeccccccccccccccccceEEEecCCC------CCC---HHHHHHHHhCCceeecccccccc
Q psy1913         348 APT-DIM-FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANG------PLT---PAAHAMLLKKNVLIIPDIFANAG  414 (535)
Q Consensus       348 i~~-ell-~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~------p~T---~eA~~iL~~rGI~viPD~laNaG  414 (535)
                      ++. +++ ..+|||+|.|+     +.+++..+.++++.+|-+-      |++   .+..++-+++|+.+.  |-+|.|
T Consensus        81 ~~~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~  151 (336)
T PRK08374         81 FSPEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVM  151 (336)
T ss_pred             CCHHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccc
Confidence            344 677 58999999777     3567777655444444322      322   344455567888776  455554

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.15  E-value=8.4e-11  Score=122.79  Aligned_cols=116  Identities=15%  Similarity=0.292  Sum_probs=83.2

Q ss_pred             EEEEEccccHHHHHHHHHHH--------CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CC
Q psy1913         282 TYIVQGFGNVGFHAARYFRR--------GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DI  352 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e--------~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-el  352 (535)
                      +|+||||||||+++++.|.+        .+.+||+|+|++|++|+|+|  ||++++++++++ |++..++- +.++. ++
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~G--ldl~~l~~~~~~-g~l~~~~~-~~~~~~~l   77 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERG--LDIGKIISYKEK-GRLEEIDY-EKIKFDEI   77 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcC--CChHHHHHHHhc-CccccCCC-CcCCHHHH
Confidence            79999999999999999987        36899999999999999999  999999998866 66655531 11233 56


Q ss_pred             ccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHh
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFE  422 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~E  422 (535)
                      +..++||+|.|+..+ .+++.+..+                 ..-..++|+.|+   .+|.|.+...|-|
T Consensus        78 l~~~~DVvVE~t~~~-~~g~~~~~~-----------------~~~aL~~G~hVV---TaNKgalA~~~~e  126 (326)
T PRK06392         78 FEIKPDVIVDVTPAS-KDGIREKNL-----------------YINAFEHGIDVV---TANKSGLANHWHD  126 (326)
T ss_pred             hcCCCCEEEECCCCC-CcCchHHHH-----------------HHHHHHCCCEEE---cCCHHHHHhhHHH
Confidence            677999999998653 233222111                 122345777774   6777666544433

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.72  E-value=3.9e-08  Score=103.26  Aligned_cols=123  Identities=19%  Similarity=0.294  Sum_probs=89.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~  350 (535)
                      .+|+|+|||+||+.+++.|.+.          +.+||+|+|+++++|+++|  +|++++.++.+..+.+..|++.....+
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCccccccCC
Confidence            5899999999999999999765          6899999999999999999  999999998888877766654332222


Q ss_pred             --CCc-cccceEEeeccccccccccccccc-----c--ceEEEecCCCCC---CHHHHHHHHhCCceee
Q psy1913         351 --DIM-FDKVDILVPAAIEKVIRKSNADKV-----Q--AKIIVEAANGPL---TPAAHAMLLKKNVLII  406 (535)
Q Consensus       351 --ell-~~~~DILiPaA~~~~It~~na~~i-----~--AkiIvEgAN~p~---T~eA~~iL~~rGI~vi  406 (535)
                        +++ ..++||+|.|+..+.-+.+.+..+     +  ..+|+ +--.|.   -++..+..+++|+.+.
T Consensus        81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt-aNK~pla~~~~eL~~~A~~~g~~~~  148 (341)
T PRK06270         81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT-SNKGPLALAYKELKELAKKNGVRFR  148 (341)
T ss_pred             HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc-CCcHHHHhhHHHHHHHHHHcCCEEE
Confidence              555 468999999998766554444333     1  23333 222443   2455555667788765

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.26  E-value=6.8e-06  Score=69.46  Aligned_cols=84  Identities=24%  Similarity=0.289  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      +||+|++..++.+.+      ..+.  ++++++++|+|+|++|+.+++.|.+.|.+.|.++|+                 
T Consensus         1 ~t~~~~~~~l~~~~~------~~~~--~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-----------------   55 (86)
T cd05191           1 ATAAGAVALLKAAGK------VTNK--SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-----------------   55 (86)
T ss_pred             ChhHHHHHHHHHHHH------HhCC--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------
Confidence            489999999986553      3443  578999999999999999999999986555555443                 


Q ss_pred             HHHHHHcCCcccCCCCcccCCCCccccceEEeecccccccccc--ccccccceEEEecC
Q psy1913         330 HTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKS--NADKVQAKIIVEAA  386 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~--na~~i~AkiIvEgA  386 (535)
                                                  ||||+|+....+..+  +....+..+|++.|
T Consensus        56 ----------------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          56 ----------------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             ----------------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence                                        999999986666655  56666677777654

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN02700 homoserine dehydrogenase family protein

Probab=98.14  E-value=5.8e-06  Score=88.20  Aligned_cols=129  Identities=12%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-------C--CeEEEEecCCceEeCCC----CCCCCHHHHHHH---HHHcCCcccCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-------R--AKCLAIVEHDTAIVPDK----GTEINYKDLHTY---KITKGTIKGYP  343 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-------G--akVVaVsD~~G~iynp~----G~dLDi~~L~~~---~~~~g~v~~~~  343 (535)
                      -..|+|.|||+||+.+++.|.++       |  .+|++|+|++++++|++    |  ||++.+.+.   +.+...+..|+
T Consensus         3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~G--ldl~~~~~~~~~~~~~~~~~~~~   80 (377)
T PLN02700          3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEE--LDDALLSEVCLAKSKGSPLSALG   80 (377)
T ss_pred             EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCC--CCHHHHHHHHHhhccccchhhhh
Confidence            36899999999999999998653       3  58999999999999975    9  998887763   33333333331


Q ss_pred             C---C-cccCCCCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchh
Q psy1913         344 G---T-KSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS  419 (535)
Q Consensus       344 ~---a-~~i~~ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivS  419 (535)
                      .   . ..+++.  ..+.+++      ..+  +....+...++|+..+...+.+...-+.++|+.||   .+|.+.+..+
T Consensus        81 ~~~~~~~~~~~~--~~~~~~~------~~~--~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVV---TaNK~~~a~~  147 (377)
T PLN02700         81 ALAGGCQVFNNS--ELSRKVI------DIA--TLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIV---LANKKPLTST  147 (377)
T ss_pred             hccccccccccc--cccchhh------hHH--HHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEE---cCCchHhccC
Confidence            1   0 000000  0000000      000  00001112455555554433344455667888884   7888777776


Q ss_pred             hHhh
Q psy1913         420 YFEW  423 (535)
Q Consensus       420 y~Ew  423 (535)
                      |-||
T Consensus       148 ~~~~  151 (377)
T PLN02700        148 LEDY  151 (377)
T ss_pred             HHHH
Confidence            6554

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.10  E-value=5.9e-06  Score=87.35  Aligned_cols=121  Identities=17%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~  350 (535)
                      .+|+|.|||+||+.+++.|.++          ..+|++|+|+++.+++++|  +|++.+++.......+..|..   ...
T Consensus         3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~g--i~~~~~l~~~~~~~~~~~~~~---~~~   77 (346)
T PRK06813          3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDG--LSIHHLLRYGGGSCAIEKYIE---HHP   77 (346)
T ss_pred             eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccC--CChhhhhhccccccchhhhhc---cCh
Confidence            5899999999999999999753          2589999999999999999  998886654321111111110   011


Q ss_pred             -CCc--cccceEEeeccccccccccccccc-c----c-eEEEecCCCCCC---HHHHHHHHhCCceee
Q psy1913         351 -DIM--FDKVDILVPAAIEKVIRKSNADKV-Q----A-KIIVEAANGPLT---PAAHAMLLKKNVLII  406 (535)
Q Consensus       351 -ell--~~~~DILiPaA~~~~It~~na~~i-~----A-kiIvEgAN~p~T---~eA~~iL~~rGI~vi  406 (535)
                       +++  ..++||+|.|+..+..+.+.+..+ +    + +-||-+--.|++   +|..++-+++|+.+.
T Consensus        78 ~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~  145 (346)
T PRK06813         78 EERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR  145 (346)
T ss_pred             HHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence             233  346899999988777777776655 2    1 334433333332   344444456666665

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.80  E-value=6.7e-05  Score=71.46  Aligned_cols=82  Identities=24%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|+++.|.|||.||+.+|+.|...|++|+.             +|+|+-.+++...+     +|   +..+- +.+ .
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V-------------~e~DPi~alqA~~d-----Gf---~v~~~~~a~-~   77 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTV-------------TEIDPIRALQAAMD-----GF---EVMTLEEAL-R   77 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEE-------------E-SSHHHHHHHHHT-----T----EEE-HHHHT-T
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEE-------------EECChHHHHHhhhc-----Cc---EecCHHHHH-h
Confidence            47999999999999999999999999999988             78998877776543     22   21111 333 4


Q ss_pred             cceEEeeccc-cccccccccccccce
Q psy1913         356 KVDILVPAAI-EKVIRKSNADKVQAK  380 (535)
Q Consensus       356 ~~DILiPaA~-~~~It~~na~~i~Ak  380 (535)
                      .+||||-|+. .++|+.+-..+++=.
T Consensus        78 ~adi~vtaTG~~~vi~~e~~~~mkdg  103 (162)
T PF00670_consen   78 DADIFVTATGNKDVITGEHFRQMKDG  103 (162)
T ss_dssp             T-SEEEE-SSSSSSB-HHHHHHS-TT
T ss_pred             hCCEEEECCCCccccCHHHHHHhcCC
Confidence            7899999887 467888887777643

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00018  Score=75.62  Aligned_cols=87  Identities=16%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA  348 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i  348 (535)
                      +-.+|+|.|||+||+.++++|.++          ..+|++|+|+++..+.  +  +|...+ ..+...+...       .
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~--~~~~~~-~~~~~~~~~~-------~   69 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--D--LDLLNA-EVWTTDGALS-------L   69 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--c--ccccch-hhheeccccc-------c
Confidence            346899999999999999999874          3599999999998885  3  444444 3333332221       1


Q ss_pred             CC-CCccccceEEeeccccccccccccccc
Q psy1913         349 PT-DIMFDKVDILVPAAIEKVIRKSNADKV  377 (535)
Q Consensus       349 ~~-ell~~~~DILiPaA~~~~It~~na~~i  377 (535)
                      .. -++..+.||++++...+.-+.+.+..+
T Consensus        70 ~~~~~~~~~~dvvve~~~~d~~~~~~~~~~   99 (333)
T COG0460          70 GDEVLLDEDIDVVVELVGGDVEPAEPADLY   99 (333)
T ss_pred             cHhhhccccCCEEEecCcccCCchhhHHHH
Confidence            12 345778999999998877666544444

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.51  E-value=0.0021  Score=66.18  Aligned_cols=192  Identities=19%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc--cc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD--KV  357 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~--~~  357 (535)
                      +|.|+|+|++|+.+|+.|.+.|.+|+.             .|.+.+.+.+..+ .|       ....+.  ++...  .+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v-------------~dr~~~~~~~~~~-~g-------~~~~~~~~e~~~~~~~~   60 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVG-------------YDRNPEAVEALAE-EG-------ATGADSLEELVAKLPAP   60 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHH-CC-------CeecCCHHHHHhhcCCC
Confidence            799999999999999999999999876             3455566655543 22       222222  44432  46


Q ss_pred             eEEeecccccccccccccc----cc-ceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913         358 DILVPAAIEKVIRKSNADK----VQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS  430 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~  430 (535)
                      |+++-|........+-...    ++ -.+|+...+. | .+.+..+.++++|+.|+ | ...+||+...  +.  .+ .+
T Consensus        61 dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a--~~--g~-~~  133 (301)
T PRK09599         61 RVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGL--ER--GY-CL  133 (301)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHH--hc--CC-eE
Confidence            8877776544222222222    22 2567777655 4 45667788999999998 7 6788886432  21  11 11


Q ss_pred             cccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913         431 SLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD  507 (535)
Q Consensus       431 ~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~  507 (535)
                      ..|    . +++   +.+.+++.+..    .+...+-..      --+--+.-.++++.-|...+..++.+-+.++++++
T Consensus       134 ~~g----G-~~~~~~~~~~~l~~~~~----~~~~~~~~~------G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~  198 (301)
T PRK09599        134 MIG----G-DKEAVERLEPIFKALAP----RAEDGYLHA------GPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASR  198 (301)
T ss_pred             Eec----C-CHHHHHHHHHHHHHHcc----cccCCeEeE------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            121    1 222   12222222211    000000000      00112344568899999999999999999999943


Q ss_pred             CCCCHHHHH
Q psy1913         508 NKLDLRNAA  516 (535)
Q Consensus       508 ~~~~lR~AA  516 (535)
                      .++|+.+..
T Consensus       199 ~gld~~~~~  207 (301)
T PRK09599        199 FDLDLAAVA  207 (301)
T ss_pred             CCCCHHHHH
Confidence            357765443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.46  E-value=0.0026  Score=58.16  Aligned_cols=114  Identities=11%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      ++++++|.|.|.|++|..+++.|.+.| .+|+. .            |-+.+.+.+..++.+.- ..  .....+  +. 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v-~------------~r~~~~~~~~~~~~~~~-~~--~~~~~~~~~~-   78 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVI-V------------NRTLEKAKALAERFGEL-GI--AIAYLDLEEL-   78 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE-E------------cCCHHHHHHHHHHHhhc-cc--ceeecchhhc-
Confidence            367899999999999999999999987 45554 3            24455555544443210 00  001112  22 


Q ss_pred             cccceEEeeccccccccccccc----cc-cceEEEecCCCC-CCHHHHHHHHhCCceeecc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNAD----KV-QAKIIVEAANGP-LTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~----~i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD  408 (535)
                      -.++|++|-|+.....+.+...    .+ .-++|++-+-.| .| +..+.++++|+.++|-
T Consensus        79 ~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-~l~~~~~~~g~~~v~g  138 (155)
T cd01065          79 LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-PLLKEARALGAKTIDG  138 (155)
T ss_pred             cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-HHHHHHHHCCCceeCC
Confidence            3589999999987665222211    12 236777776556 45 7777889999887764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.45  E-value=0.00023  Score=83.16  Aligned_cols=87  Identities=13%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC---------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG---------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~---------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..+|+|.|||+||+.+++.|.+.         ..+|++|+++++.+++|+|  +|.+.+.+......  ..+.-...++
T Consensus       464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g--~~~~~~~~~~~~~~--~~~~~~~~~~  539 (819)
T PRK09436        464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHG--IDLDNWREELAEAG--EPFDLDRLIR  539 (819)
T ss_pred             ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCC--CCHHHHHHHHhhcc--CCCCHHHHHH
Confidence            568999999999999999999753         3579999999999999999  99887665544321  1111001111


Q ss_pred             C-CCccccceEEeeccccccc
Q psy1913         350 T-DIMFDKVDILVPAAIEKVI  369 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~~~~I  369 (535)
                      . .-...+.||+|.|+....+
T Consensus       540 ~~~~~~~~~~vvvd~t~~~~~  560 (819)
T PRK09436        540 LVKEYHLLNPVIVDCTSSQAV  560 (819)
T ss_pred             HHhhcCCCCCEEEECCCChHH
Confidence            0 1123467899998865443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.42  E-value=0.00069  Score=69.92  Aligned_cols=106  Identities=21%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--el  352 (535)
                      ++.|++|.|.|+|.+|+.+|+.|...|++|+. .+            -+.+.+.+.. +.+       ...++  .  +.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v-~~------------R~~~~~~~~~-~~g-------~~~~~~~~l~~~  206 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFV-GA------------RSSADLARIT-EMG-------LIPFPLNKLEEK  206 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHHHHHH-HCC-------CeeecHHHHHHH
Confidence            57899999999999999999999999998875 22            2333333322 111       12221  1  22


Q ss_pred             ccccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      + .++||+|-|.....++.+....++ -.+|+.-|-.| -|+-  +..+++|+..+
T Consensus       207 l-~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~  259 (287)
T TIGR02853       207 V-AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL  259 (287)
T ss_pred             h-ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence            2 489999999987778877666664 36889999888 4554  45688998765

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.25  E-value=0.00052  Score=64.50  Aligned_cols=106  Identities=15%  Similarity=0.167  Sum_probs=71.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|+|++|+.+|+.|.+.|+.|.+             .|.+.+.+.+..+..        ++..+. .=+...||+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~-------------~d~~~~~~~~~~~~g--------~~~~~s~~e~~~~~dv   60 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTV-------------YDRSPEKAEALAEAG--------AEVADSPAEAAEQADV   60 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEE-------------EESSHHHHHHHHHTT--------EEEESSHHHHHHHBSE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEe-------------eccchhhhhhhHHhh--------hhhhhhhhhHhhcccc
Confidence            5899999999999999999999999988             557777777776652        343443 223457899


Q ss_pred             Eeecccc-----ccccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         360 LVPAAIE-----KVIRKSN-ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       360 LiPaA~~-----~~It~~n-a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      ++-|-..     .++..++ +..+ +-++|++-.+..  .+.+..+.|.++|+.|+=
T Consensus        61 vi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (163)
T PF03446_consen   61 VILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD  117 (163)
T ss_dssp             EEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred             eEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence            9888654     3333322 2223 357888887765  456778889999998873

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.24  E-value=0.00059  Score=74.17  Aligned_cols=106  Identities=20%  Similarity=0.301  Sum_probs=71.0

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK  327 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~  327 (535)
                      .-.||.|++.++..+         .++  .+.|++|+|.|+|++|+.+|+.|...|++|+.             +|.|..
T Consensus       191 ~~gt~~s~~~ai~ra---------t~~--~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV-------------~d~dp~  246 (425)
T PRK05476        191 RYGTGESLLDGIKRA---------TNV--LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIV-------------TEVDPI  246 (425)
T ss_pred             cHHHHhhhHHHHHHh---------ccC--CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EcCCch
Confidence            355788877776622         133  36899999999999999999999999999888             557665


Q ss_pred             HHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccc-cccccccccccccc-eEEEecC
Q psy1913         328 DLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAA  386 (535)
Q Consensus       328 ~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgA  386 (535)
                      ...+.... |       ...++- +++ ..+||+|.|+. .+.|+.+....++. .+++-++
T Consensus       247 ra~~A~~~-G-------~~v~~l~eal-~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        247 CALQAAMD-G-------FRVMTMEEAA-ELGDIFVTATGNKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             hhHHHHhc-C-------CEecCHHHHH-hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence            55443322 1       122222 333 37999999975 45677666666653 3444433

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.0059  Score=61.80  Aligned_cols=197  Identities=20%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--ccc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DKV  357 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~~  357 (535)
                      ++-++|+|..|..+++.|.+.|..||+             -|+|.+++.+++...  ..   ++..++.  ..|.  --+
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~-------------yD~n~~av~~~~~~g--a~---~a~sl~el~~~L~~pr~v   63 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHDVVG-------------YDVNQTAVEELKDEG--AT---GAASLDELVAKLSAPRIV   63 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCeEEE-------------EcCCHHHHHHHHhcC--Cc---cccCHHHHHHhcCCCcEE
Confidence            466899999999999999999999999             789999998887653  11   1221111  1222  223


Q ss_pred             eEEeecc-ccccccccccccccc-eEEEecCCCCC--CHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccc
Q psy1913         358 DILVPAA-IEKVIRKSNADKVQA-KIIVEAANGPL--TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLG  433 (535)
Q Consensus       358 DILiPaA-~~~~It~~na~~i~A-kiIvEgAN~p~--T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~g  433 (535)
                      =+.+|++ +.+.+=.+-++.+.+ -+|++|-|.-.  +..-.+.|.++||.++  =.--+||+.-.       ..++.+ 
T Consensus        64 WlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G~-------~~G~~l-  133 (300)
T COG1023          64 WLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWGA-------ERGYCL-  133 (300)
T ss_pred             EEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchhh-------hcCceE-
Confidence            4678887 555555556666655 79999999885  3444567999999998  36788888432       122222 


Q ss_pred             ccccccchhhHHHHHHhhhhhhhh-hhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy1913         434 RMSFGYDKEISDLLLSSIDTSLSD-TFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDL  512 (535)
Q Consensus       434 rl~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~l  512 (535)
                       |-.. + +..+++++-|-+.+.. -.|--  ..-+.-.-.++      --||.++|+-|-+|+.+=+++-++.+-.+|+
T Consensus       134 -MiGG-~-~~a~~~~~pif~~lA~ge~Gyl--~~Gp~GsGHfv------KMVHNGIEYGmM~a~aEGfelL~~s~fD~D~  202 (300)
T COG1023         134 -MIGG-D-EEAVERLEPIFKALAPGEDGYL--YCGPSGSGHFV------KMVHNGIEYGMMQAIAEGFELLKNSPFDYDL  202 (300)
T ss_pred             -EecC-c-HHHHHHHHHHHHhhCcCcCccc--cccCCCcchhH------HHHhccHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence             2222 2 3345555555444422 00000  00000000111      2599999999999999999999987666787


Q ss_pred             HHHHh
Q psy1913         513 RNAAY  517 (535)
Q Consensus       513 R~AAy  517 (535)
                      +.-|=
T Consensus       203 ~~VA~  207 (300)
T COG1023         203 EAVAE  207 (300)
T ss_pred             HHHHH
Confidence            76553

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.22  E-value=0.00062  Score=79.44  Aligned_cols=130  Identities=12%  Similarity=0.082  Sum_probs=79.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC--------C--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG--------R--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA  348 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~--------G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i  348 (535)
                      +-.+|+|.|||+||+.+++.|.++        |  .+|++|+|+++.+++++|  +|...+.+.......  .++-...+
T Consensus       457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~g--i~~~~~~~~~~~~~~--~~~~~~~~  532 (810)
T PRK09466        457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDG--LDASRALAFFDDEAV--EWDEESLF  532 (810)
T ss_pred             ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccC--CCHHHHHhhHHhhcC--CccHHHHH
Confidence            457899999999999999999753        3  589999999999999999  998877765543221  11100000


Q ss_pred             CCCCc---cccceEEeeccccccccccccccccceEEEecCCCC-CC------HHHHHHHHhCCceeeccccccccCc
Q psy1913         349 PTDIM---FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LT------PAAHAMLLKKNVLIIPDIFANAGGV  416 (535)
Q Consensus       349 ~~ell---~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T------~eA~~iL~~rGI~viPD~laNaGGV  416 (535)
                        +++   ..+.+|+|.|.....+...-..-+++..=|=-||-. .+      ++..+.-+++|+.+.  |=++.||-
T Consensus       533 --e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~--yEasV~~g  606 (810)
T PRK09466        533 --LWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL--YNATVGAG  606 (810)
T ss_pred             --HHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE--Eeceeeec
Confidence              222   233469999986543332222333333333344542 21      233344567787776  44555543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.07  E-value=0.002  Score=69.97  Aligned_cols=112  Identities=17%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..|+  .+.|++|+|+|+|++|..+|+.+...|++|++             +|.|...+...+. .|       +..++
T Consensus       194 r~t~~--~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV-------------~d~d~~R~~~A~~-~G-------~~~~~  250 (413)
T cd00401         194 RATDV--MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIV-------------TEVDPICALQAAM-EG-------YEVMT  250 (413)
T ss_pred             HhcCC--CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EECChhhHHHHHh-cC-------CEEcc
Confidence            34454  47899999999999999999999999999888             5577666655443 22       22222


Q ss_pred             C-CCccccceEEeeccc-cccccccccccccc-eEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         350 T-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      . +.+ ..+||+|.|+. ..+++.+-...++. .+|+-.+..+.+-.... |..+.+.+.
T Consensus       251 ~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~-L~~~el~i~  308 (413)
T cd00401         251 MEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKG-LKENAVEVV  308 (413)
T ss_pred             HHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHH-HHhhccEEE
Confidence            2 333 36899999986 45566554555542 23333334444322223 455655443

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.96  E-value=0.0024  Score=70.20  Aligned_cols=97  Identities=22%  Similarity=0.301  Sum_probs=66.0

Q ss_pred             HHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc
Q psy1913         268 YMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS  347 (535)
Q Consensus       268 ~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~  347 (535)
                      .++..+.  .+.|++|.|.|+|++|+.+|+.|...|++|++             +|.|+.........        +.+.
T Consensus       244 ~~R~~~~--~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV-------------~e~dp~~a~~A~~~--------G~~~  300 (476)
T PTZ00075        244 IFRATDV--MIAGKTVVVCGYGDVGKGCAQALRGFGARVVV-------------TEIDPICALQAAME--------GYQV  300 (476)
T ss_pred             HHHhcCC--CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCchhHHHHHhc--------Ccee
Confidence            3444453  58999999999999999999999999999887             44554443332221        2222


Q ss_pred             cCC-CCccccceEEeeccc-cccccccccccccc-eEEEecCCC
Q psy1913         348 APT-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAANG  388 (535)
Q Consensus       348 i~~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN~  388 (535)
                      ++- +++ ..+||+|.|+. .+.|+.+....++- -+|+..+-+
T Consensus       301 ~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        301 VTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence            222 443 47999999976 46788888877764 355555554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.96  E-value=0.0072  Score=62.63  Aligned_cols=95  Identities=19%  Similarity=0.325  Sum_probs=69.0

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|..||...++          ..+.  +++|++|+|.|-|+ ||.-+|.+|.++|+.|+. ++++       .    
T Consensus       137 ~~PcTp~ai~~ll~----------~~~i--~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv-~~s~-------t----  192 (286)
T PRK14175        137 FVPCTPLGIMEILK----------HADI--DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTI-LHSR-------S----  192 (286)
T ss_pred             CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEE-EeCC-------c----
Confidence            36899999887766          3554  58999999999999 999999999999999875 2221       1    


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCC
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGP  389 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p  389 (535)
                       ..|.+                     ....+||+|-|.. .+.|+++....  ..+|+..+.++
T Consensus       193 -~~l~~---------------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~  233 (286)
T PRK14175        193 -KDMAS---------------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP  233 (286)
T ss_pred             -hhHHH---------------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence             11111                     2257899999987 55777765432  46788887766

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.92  E-value=0.0041  Score=64.46  Aligned_cols=106  Identities=20%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--el  352 (535)
                      ++.+++|.|.|+|.+|+.++..|...|++|+++             |-+.+.+.... ..|       .+.+.  .  +.
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~-------------~r~~~~~~~~~-~~G-------~~~~~~~~l~~~  207 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVG-------------ARKSAHLARIT-EMG-------LSPFHLSELAEE  207 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEE-------------ECCHHHHHHHH-HcC-------CeeecHHHHHHH
Confidence            478999999999999999999999999988772             34444443332 222       22221  1  22


Q ss_pred             ccccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      + .++||+|-|+....++.+-...++ -.+|+.-|..| -|.-  +.-+++||.++
T Consensus       208 l-~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~  260 (296)
T PRK08306        208 V-GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL  260 (296)
T ss_pred             h-CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence            2 379999998866666665544443 24666666655 2221  12356676664

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.81  E-value=0.00073  Score=59.83  Aligned_cols=88  Identities=14%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             ccccHHHHHHHHHHHC----CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-ccceE
Q psy1913         287 GFGNVGFHAARYFRRG----RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DKVDI  359 (535)
Q Consensus       287 GfGnVG~~~A~~L~e~----GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~~DI  359 (535)
                      |||+||+.+++.|.+.    +.+|++|+|++ .+.+++-        .... .        +....++  +++. .++||
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~--------~~~~-~--------~~~~~~~~~~~~~~~~~dv   62 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW--------AASF-P--------DEAFTTDLEELIDDPDIDV   62 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH--------HHHH-T--------HSCEESSHHHHHTHTT-SE
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh--------hhhc-c--------cccccCCHHHHhcCcCCCE
Confidence            8999999999999876    78999999999 6665441        0111 0        1222233  4444 57999


Q ss_pred             EeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcc
Q psy1913         360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT  417 (535)
Q Consensus       360 LiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVi  417 (535)
                      +|.|+..+.+.                      +.-.-..++|+.|+   .+|.|...
T Consensus        63 vVE~t~~~~~~----------------------~~~~~~L~~G~~VV---t~nk~ala   95 (117)
T PF03447_consen   63 VVECTSSEAVA----------------------EYYEKALERGKHVV---TANKGALA   95 (117)
T ss_dssp             EEE-SSCHHHH----------------------HHHHHHHHTTCEEE---ES-HHHHH
T ss_pred             EEECCCchHHH----------------------HHHHHHHHCCCeEE---EECHHHhh
Confidence            99996443221                      22233457999995   79998876

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.79  E-value=0.0032  Score=60.19  Aligned_cols=107  Identities=18%  Similarity=0.216  Sum_probs=66.9

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      .++.|+||.|.|||++|+.+|+.|...|++|++        ||+..     ..-... ...       +.+..+- +++ 
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~-----~~~~~~-~~~-------~~~~~~l~ell-   89 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG--------YDRSP-----KPEEGA-DEF-------GVEYVSLDELL-   89 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE--------EESSC-----HHHHHH-HHT-------TEEESSHHHHH-
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCceeEE--------ecccC-----Chhhhc-ccc-------cceeeehhhhc-
Confidence            368999999999999999999999999999998        55554     111111 111       1111111 444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      ..|||++-+..     .+.|+.+...+++ --+++.-|-+.+ ..+| .+.|++.-|.
T Consensus        90 ~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~  147 (178)
T PF02826_consen   90 AQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA  147 (178)
T ss_dssp             HH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred             chhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence            36999998877     4566666666665 358888999985 4333 3456555443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.66  E-value=0.0051  Score=66.62  Aligned_cols=91  Identities=21%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|+|.|+|++|..+|+.+...|++|++             +|.|+....+.... |       ...++. +.+ .
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV-------------~d~dp~r~~~A~~~-G-------~~v~~leeal-~  249 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIV-------------TEVDPIRALEAAMD-G-------FRVMTMEEAA-K  249 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEE-------------EeCChhhHHHHHhc-C-------CEeCCHHHHH-h
Confidence            37899999999999999999999999999988             45666554433321 2       222222 333 4


Q ss_pred             cceEEeeccc-ccccccccccccc-ceEEEecCCCC
Q psy1913         356 KVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGP  389 (535)
Q Consensus       356 ~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p  389 (535)
                      .+||+|.|+. .+.|+.+....++ -.+|+-.+-.+
T Consensus       250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            7899998875 4556665666665 24555555444

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.62  E-value=0.047  Score=55.78  Aligned_cols=189  Identities=13%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI  359 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI  359 (535)
                      +|.|.|+|++|..+|+.|.+.|.+|++             .|.+.+.+.+..+. |       ....+.  +++ .+||+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~-------------~dr~~~~~~~~~~~-g-------~~~~~~~~~~~-~~aDi   58 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHV-------------TTIGPEVADELLAA-G-------AVTAETARQVT-EQADV   58 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHC-C-------CcccCCHHHHH-hcCCE
Confidence            488999999999999999999999886             33555555444332 2       111222  333 58999


Q ss_pred             Eeeccccccccccc-------ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913         360 LVPAAIEKVIRKSN-------ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH  429 (535)
Q Consensus       360 LiPaA~~~~It~~n-------a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~  429 (535)
                      ++-|..........       ...++ -++|+...+..  .+.+..+.|.++|+.++---+  .|+... .   .+..-.
T Consensus        59 vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv--~g~~~~-a---~~g~l~  132 (291)
T TIGR01505        59 IFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPV--SGGEIG-A---IEGTLS  132 (291)
T ss_pred             EEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCC--CCCHHH-H---hcCCEE
Confidence            99997754222111       12222 36788766554  234566778899988764221  333211 1   111101


Q ss_pred             ccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy1913         430 SSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNK  509 (535)
Q Consensus       430 ~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~  509 (535)
                      +.-|    . +++ ..+.+..+-+.    ++..+-...+......      ..+++.-+...+..++.+...++++++  
T Consensus       133 i~~g----g-~~~-~~~~~~~ll~~----lg~~~~~~g~~g~a~~------~Kl~~n~~~~~~~~~~~Ea~~l~~~~G--  194 (291)
T TIGR01505       133 IMVG----G-DQA-VFDRVKPLFEA----LGKNIVLVGGNGDGQT------CKVANQIIVALNIEAVSEALVFASKAG--  194 (291)
T ss_pred             EEec----C-CHH-HHHHHHHHHHH----hcCCeEEeCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            1111    1 222 11112221111    1211111111111111      126777777788888999999999985  


Q ss_pred             CCHHHHH
Q psy1913         510 LDLRNAA  516 (535)
Q Consensus       510 ~~lR~AA  516 (535)
                      +|..+..
T Consensus       195 id~~~~~  201 (291)
T TIGR01505       195 VDPVRVR  201 (291)
T ss_pred             CCHHHHH
Confidence            6766554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.59  E-value=0.076  Score=57.63  Aligned_cols=199  Identities=13%  Similarity=0.128  Sum_probs=111.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-------------CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-------------GTKS  347 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-------------~a~~  347 (535)
                      ++|+|.|.|.||..+|..|.+.|..|++             .|.|.+.+....  .|.+.-+.             +...
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-------------~D~~~~~v~~l~--~g~~~~~e~~l~~~l~~~~~~g~l~   68 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIG-------------VDINQHAVDTIN--RGEIHIVEPDLDMVVKTAVEGGYLR   68 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHH--CCCCCcCCCCHHHHHHHHhhcCcee
Confidence            6899999999999999999999999998             446666555432  12111000             0000


Q ss_pred             cCCCCccccceEEeecccccccccc--------------ccccc--cceEEEecCCCC-CCHHHHHHHHhCC--------
Q psy1913         348 APTDIMFDKVDILVPAAIEKVIRKS--------------NADKV--QAKIIVEAANGP-LTPAAHAMLLKKN--------  402 (535)
Q Consensus       348 i~~ell~~~~DILiPaA~~~~It~~--------------na~~i--~AkiIvEgAN~p-~T~eA~~iL~~rG--------  402 (535)
                      .+ ... .+||+++-|..... +++              -++.+  .+-+|.+..-.| +|.+....|.+++        
T Consensus        69 ~~-~~~-~~aDvvii~vptp~-~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~  145 (415)
T PRK11064         69 AT-TTP-EPADAFLIAVPTPF-KGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQ  145 (415)
T ss_pred             ee-ccc-ccCCEEEEEcCCCC-CCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccc
Confidence            00 111 27999998877531 111              11222  245777888787 5566666676654        


Q ss_pred             --------ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHh
Q psy1913         403 --------VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDR  474 (535)
Q Consensus       403 --------I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  474 (535)
                              +.+.|.++.  +|-...-+....   .+     --..+++ ..+.+..+.+.+.    ...-...+...++.
T Consensus       146 ~g~~~~f~v~~~PE~~~--~G~~~~~~~~~~---~v-----vgG~~~~-~~~~~~~ly~~~~----~~~~~~~~~~~Ae~  210 (415)
T PRK11064        146 AGEQADINIAYCPERVL--PGQVMVELIKND---RV-----IGGMTPV-CSARASELYKIFL----EGECVVTNSRTAEM  210 (415)
T ss_pred             ccCCCCeEEEECCCccC--CCChhhhhcCCC---EE-----EEeCCHH-HHHHHHHHHHHhc----CCCeeeCCHHHHHH
Confidence                    356676662  444333322221   11     1111222 2223333333221    11112233444555


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Q psy1913         475 ISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSA  520 (535)
Q Consensus       475 i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~a  520 (535)
                      ++      ++..-+-.......+++..+|++.+  +|.....-..+
T Consensus       211 ~K------l~~N~~~a~~ia~~nE~~~lae~~G--iD~~~v~~~~~  248 (415)
T PRK11064        211 CK------LTENSFRDVNIAFANELSLICADQG--INVWELIRLAN  248 (415)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhc
Confidence            55      6777788888888999999999985  77766544333

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.55  E-value=0.027  Score=53.96  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI  324 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL  324 (535)
                      ...++|++.++..++          ...  .+++|++|.|.|.|. +|..+|++|.+.|++|+. ++++           
T Consensus        22 ~~~p~~~~a~v~l~~----------~~~--~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v-~~r~-----------   77 (168)
T cd01080          22 GFIPCTPAGILELLK----------RYG--IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTV-CHSK-----------   77 (168)
T ss_pred             CccCChHHHHHHHHH----------HcC--CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE-EECC-----------
Confidence            557889888876665          222  358999999999998 588899999999998554 4332           


Q ss_pred             CHHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCC
Q psy1913         325 NYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGP  389 (535)
Q Consensus       325 Di~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p  389 (535)
                       .++|.+                     .-.++||+|-|.. .+.|+.+..+.  ..+|+..|..+
T Consensus        78 -~~~l~~---------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr  119 (168)
T cd01080          78 -TKNLKE---------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR  119 (168)
T ss_pred             -chhHHH---------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence             111211                     1247899999987 36788776543  47888888766

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.55  E-value=0.0067  Score=62.58  Aligned_cols=192  Identities=16%  Similarity=0.208  Sum_probs=108.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc--ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF--DKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~--~~~  357 (535)
                      ++|.|.|+|+.|..+|+.|.+.|.+|++             .|.+.+.+.+..+. +. ..+   .  +. ++.+  ..|
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~-------------~dr~~~~~~~l~~~-g~-~~~---~--s~~~~~~~~~~~   60 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVG-------------YDHDQDAVKAMKED-RT-TGV---A--NLRELSQRLSAP   60 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHc-CC-ccc---C--CHHHHHhhcCCC
Confidence            3799999999999999999999999877             34666766665543 21 111   1  11 2221  368


Q ss_pred             eEEeecccccccccccc----cccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913         358 DILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS  430 (535)
Q Consensus       358 DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~  430 (535)
                      |+++-|.... ...+-+    +.++ -++|+...|..  .|.+..+.+.++|+.++-  ..-+||+.. .   .+   +.
T Consensus        61 dvIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd--a~vsGg~~~-a---~~---G~  130 (298)
T TIGR00872        61 RVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD--CGTSGGVWG-R---ER---GY  130 (298)
T ss_pred             CEEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe--cCCCCCHHH-H---hc---CC
Confidence            9998886654 333322    3332 37899999984  567777889999998763  223333321 0   11   11


Q ss_pred             cccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913         431 SLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD  507 (535)
Q Consensus       431 ~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~  507 (535)
                      .+  |-.. +++   ....+++.+-.        +.  . .-.+--..--+.-.++++..|...+..+|.+.+.++++.+
T Consensus       131 ~~--~~gG-~~~~~~~~~~~l~~~~~--------~~--~-~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g  196 (298)
T TIGR00872       131 CF--MIGG-DGEAFARAEPLFADVAP--------EE--Q-GYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQ  196 (298)
T ss_pred             ee--eeCC-CHHHHHHHHHHHHHhcC--------cC--C-CEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11  0001 222   11122222110        00  0 0000001111234568899999999999999999999875


Q ss_pred             CCCCHHHHH
Q psy1913         508 NKLDLRNAA  516 (535)
Q Consensus       508 ~~~~lR~AA  516 (535)
                      .++|+.+-+
T Consensus       197 ~~ld~~~~~  205 (298)
T TIGR00872       197 FDFDIPEVA  205 (298)
T ss_pred             CCcCHHHHH
Confidence            446754433

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02494 adenosylhomocysteinase

Probab=96.52  E-value=0.0044  Score=68.19  Aligned_cols=89  Identities=20%  Similarity=0.332  Sum_probs=60.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|+|.|+|.+|+.+|+.+...|++|++             +|.|.......... |       ...++- +++ .
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV-------------~e~dp~r~~eA~~~-G-------~~vv~leEal-~  308 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIV-------------TEIDPICALQALME-G-------YQVLTLEDVV-S  308 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCchhhHHHHhc-C-------CeeccHHHHH-h
Confidence            47899999999999999999999999999888             44555443333322 1       111221 333 3


Q ss_pred             cceEEeeccc-cccccccccccccc-eEEEecCC
Q psy1913         356 KVDILVPAAI-EKVIRKSNADKVQA-KIIVEAAN  387 (535)
Q Consensus       356 ~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN  387 (535)
                      .+||+|-|+. .+.|+.+....++. -+++-.+-
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            6899998776 45677877777764 24444444

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.48  E-value=0.13  Score=55.98  Aligned_cols=98  Identities=16%  Similarity=0.330  Sum_probs=73.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc--
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM--  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell--  353 (535)
                      +|++++|.|.|.|-+|.-+|+.|.++|.+-|.|+.++            .+...++.++.|       +..++- ++.  
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT------------~erA~~La~~~~-------~~~~~l~el~~~  235 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT------------LERAEELAKKLG-------AEAVALEELLEA  235 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC------------HHHHHHHHHHhC-------CeeecHHHHHHh
Confidence            4799999999999999999999999998888877653            455556666654       333322 332  


Q ss_pred             cccceEEeec--cccccccccccccccc----eEEEecCCCC-CCHH
Q psy1913         354 FDKVDILVPA--AIEKVIRKSNADKVQA----KIIVEAANGP-LTPA  393 (535)
Q Consensus       354 ~~~~DILiPa--A~~~~It~~na~~i~A----kiIvEgAN~p-~T~e  393 (535)
                      -.++||+|-|  |...+|+.++....-.    .+|++-||.+ +.|+
T Consensus       236 l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~  282 (414)
T COG0373         236 LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPE  282 (414)
T ss_pred             hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCcc
Confidence            3589999999  7799999988877633    2999999987 4444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.48  E-value=0.063  Score=57.86  Aligned_cols=202  Identities=13%  Similarity=0.153  Sum_probs=115.6

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc--C------CCCcc-cCCC-
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG--Y------PGTKS-APTD-  351 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~--~------~~a~~-i~~e-  351 (535)
                      +|+|.|.|.||..+|..|+. |..|++             .|+|.+.+.+..+..-.+..  .      ..... .+.+ 
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~Vig-------------vD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~   67 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVA-------------LDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDK   67 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEE-------------EECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecch
Confidence            69999999999999977774 999998             66888877766542111100  0      01111 1111 


Q ss_pred             -CccccceEEeecccccccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCceeeccccccc
Q psy1913         352 -IMFDKVDILVPAAIEKVIRKS-------NA-------DKV--QAKIIVEAANGP-LTPAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       352 -ll~~~~DILiPaA~~~~It~~-------na-------~~i--~AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD~laNa  413 (535)
                       -...+||++|-|..+.. +.+       .+       .++  ..-+|.+..=.| +|.+..+.+.++|+.+-|.++...
T Consensus        68 ~~~~~~ad~vii~Vpt~~-~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G  146 (388)
T PRK15057         68 NEAYRDADYVIIATPTDY-DPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREG  146 (388)
T ss_pred             hhhhcCCCEEEEeCCCCC-ccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCC
Confidence             12368999999987552 221       11       111  134555666666 667777788889999999987543


Q ss_pred             cCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhh-hcchhhHHHhhcccchHHHHHHHHHHHH
Q psy1913         414 GGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIR-IQKSAMYEDRISNATEKDIVQSSLTHSM  492 (535)
Q Consensus       414 GGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~i~g~~e~d~V~~~L~~~m  492 (535)
                       =.    ++-+.|...+--|     -+++.....++.++..+   ++.... ...+...++.++      ++..-+-...
T Consensus       147 -~a----~~d~~~p~rvv~G-----~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~AE~~K------l~~N~~~a~~  207 (388)
T PRK15057        147 -KA----LYDNLHPSRIVIG-----ERSERAERFAALLQEGA---IKQNIPTLFTDSTEAEAIK------LFANTYLAMR  207 (388)
T ss_pred             -cc----cccccCCCEEEEE-----cCcHHHHHHHHHHHhhh---hcCCCceeeCCHHHHHHHH------HHHHHHHHHH
Confidence             22    1222222222111     12333333333332211   111111 123344455555      6777778888


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHhHH
Q psy1913         493 QRAGRDILEYAEKSDNKLDLRNAAYCS  519 (535)
Q Consensus       493 ~~a~~~v~~~a~~~~~~~~lR~AAy~~  519 (535)
                      ....+++..+|++.+  +|.....=.+
T Consensus       208 Ia~~NE~a~lae~~G--iD~~eV~~a~  232 (388)
T PRK15057        208 VAYFNELDSYAESLG--LNTRQIIEGV  232 (388)
T ss_pred             HHHHHHHHHHHHHhC--cCHHHHHHHh
Confidence            888999999999985  7876655443

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.41  E-value=0.013  Score=60.73  Aligned_cols=50  Identities=30%  Similarity=0.347  Sum_probs=42.9

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+||...++          ..+.  +++|++|+|.|-++ ||.-+|.+|..+||.|..
T Consensus       143 ~~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv  193 (287)
T PRK14176        143 LVPCTPHGVIRALE----------EYGV--DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSV  193 (287)
T ss_pred             CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEE
Confidence            36889999987766          4565  58999999999999 999999999999998865

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.36  E-value=0.051  Score=58.97  Aligned_cols=97  Identities=18%  Similarity=0.333  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C--C
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T--D  351 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~--e  351 (535)
                      ++.+++|.|.|+|.+|..+++.|...| .+|+. .+            -+.+...+..++.+.       ..++  .  +
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v-~~------------rs~~ra~~la~~~g~-------~~i~~~~l~~  236 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILI-AN------------RTYERAEDLAKELGG-------EAVKFEDLEE  236 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEE-Ee------------CCHHHHHHHHHHcCC-------eEeeHHHHHH
Confidence            368999999999999999999999999 45555 32            444555555544331       1111  1  2


Q ss_pred             CccccceEEeeccc--cccccccccccc-----cceEEEecCCCC-CCHHH
Q psy1913         352 IMFDKVDILVPAAI--EKVIRKSNADKV-----QAKIIVEAANGP-LTPAA  394 (535)
Q Consensus       352 ll~~~~DILiPaA~--~~~It~~na~~i-----~AkiIvEgAN~p-~T~eA  394 (535)
                      .+ ..+||+|-|+.  ...|+.+.....     +..+|+..|+.. +.|+.
T Consensus       237 ~l-~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v  286 (417)
T TIGR01035       237 YL-AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV  286 (417)
T ss_pred             HH-hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence            22 37999999964  566776665543     224899999644 66664

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.31  E-value=0.025  Score=56.50  Aligned_cols=118  Identities=17%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell  353 (535)
                      ++++++|.|.|.|.+|..+|+.|.+.|++  -+.|.|++|-++.....+|.. ...++.+..+. .   ... .+- +.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~-~~~~la~~~~~-~---~~~-~~l~~~l   95 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNP-DKNEIAKETNP-E---KTG-GTLKEAL   95 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhH-HHHHHHHHhcc-C---ccc-CCHHHHH
Confidence            47999999999999999999999999998  888999999887655411321 11223333211 0   000 111 233


Q ss_pred             cccceEEeecccccccccccccccc-ceEEEecCCCC-CCHHHHHHHHhCCc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNV  403 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI  403 (535)
                       .++||||=|+..+.++++....+. ..+|..-. +| .|+-..+. ++.|.
T Consensus        96 -~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~A-~~~ga  144 (226)
T cd05311          96 -KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEEA-KEAGA  144 (226)
T ss_pred             -hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHHH-HHcCC
Confidence             258999999998899987777663 35777766 56 34433333 44566

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.27  E-value=0.014  Score=61.39  Aligned_cols=90  Identities=20%  Similarity=0.305  Sum_probs=59.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCC-CCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPD-KGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp-~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      .|.|+||-|.|||++|+.+|+.|...|.+|++        ||| ..  -+.             ..+.+...++.  ++|
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~--------~d~~~~--~~~-------------~~~~~~~~~~~Ld~lL  195 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG--------YDPYSP--RER-------------AGVDGVVGVDSLDELL  195 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCeEEE--------ECCCCc--hhh-------------hccccceecccHHHHH
Confidence            57899999999999999999999999999999        555 22  110             01112222233  333


Q ss_pred             cccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC
Q psy1913         354 FDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL  390 (535)
Q Consensus       354 ~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~  390 (535)
                       ..|||++-+..     .+.|+.+...++| --+++-.|=|++
T Consensus       196 -~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~v  237 (324)
T COG0111         196 -AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGV  237 (324)
T ss_pred             -hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcce
Confidence             36777776654     4556666666664 127788888884

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.24  E-value=0.0074  Score=51.09  Aligned_cols=86  Identities=14%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             EEEEEccccHHHHHHHHHHHCC---CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC--C-CCccc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGR---AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP--T-DIMFD  355 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~--~-ell~~  355 (535)
                      ||.|.|+||+|..+++-|.+.|   .+|..++            +-+.+.+.+++++.+       .....  + +++. 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~------------~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~-   60 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVS------------SRSPEKAAELAKEYG-------VQATADDNEEAAQ-   60 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEE------------ESSHHHHHHHHHHCT-------TEEESEEHHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeec------------cCcHHHHHHHHHhhc-------cccccCChHHhhc-
Confidence            6889999999999999999999   8888543            266788888877764       22222  2 4554 


Q ss_pred             cceEEeeccccccccccccccc----cceEEEecCCC
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV----QAKIIVEAANG  388 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~  388 (535)
                      ++||++.|.....+.+ -+..+    +-++|+.-+|+
T Consensus        61 ~advvilav~p~~~~~-v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   61 EADVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             HTSEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEESTT
T ss_pred             cCCEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCCC
Confidence            8999999988776654 22222    45666666553

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.22  E-value=0.021  Score=59.20  Aligned_cols=50  Identities=24%  Similarity=0.272  Sum_probs=42.9

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccH-HHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNV-GFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnV-G~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+|+...++          ..|+  +++|++|+|.|.|++ |+-+|.+|.++|+.|+.
T Consensus       137 ~~PcTp~aii~lL~----------~~~i--~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~  187 (285)
T PRK14189        137 FRPCTPYGVMKMLE----------SIGI--PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTI  187 (285)
T ss_pred             CcCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            46899999876665          4566  589999999999888 99999999999999886

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.15  E-value=0.038  Score=59.50  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..|.  .+.|+||.|+|+|++|+.+|+.|...|.+|++        |||..  -   .      ..+      .....+
T Consensus       108 r~~g~--~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~--------~Dp~~--~---~------~~~------~~~~~~  160 (381)
T PRK00257        108 EREGV--DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLV--------CDPPR--Q---E------AEG------DGDFVS  160 (381)
T ss_pred             cccCC--CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEE--------ECCcc--c---c------ccc------CccccC
Confidence            34453  58999999999999999999999999999987        23321  0   0      000      001111


Q ss_pred             C-CCccccceEEeeccc---------ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913         350 T-DIMFDKVDILVPAAI---------EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV  403 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~---------~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI  403 (535)
                      - +++. .|||++-+..         .+.|+.+....++ -.+++..+=|++ ..+| .+.|.++-+
T Consensus       161 l~ell~-~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i  226 (381)
T PRK00257        161 LERILE-ECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGED  226 (381)
T ss_pred             HHHHHh-hCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence            1 3333 6888876554         2566666666665 368888888884 3333 355655543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.12  E-value=0.017  Score=52.89  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=68.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc--
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM--  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell--  353 (535)
                      ++++++|.|.|.|.+|+.++..|.+.|++=|.|..+            +.+.+.+..+..+..    ....++- ++.  
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR------------t~~ra~~l~~~~~~~----~~~~~~~~~~~~~   72 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR------------TPERAEALAEEFGGV----NIEAIPLEDLEEA   72 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES------------SHHHHHHHHHHHTGC----SEEEEEGGGHCHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC------------CHHHHHHHHHHcCcc----ccceeeHHHHHHH
Confidence            579999999999999999999999999986655543            345666666554210    1111111 222  


Q ss_pred             cccceEEeecccc--ccccccccccccc--eEEEecCCCC-CCHHH
Q psy1913         354 FDKVDILVPAAIE--KVIRKSNADKVQA--KIIVEAANGP-LTPAA  394 (535)
Q Consensus       354 ~~~~DILiPaA~~--~~It~~na~~i~A--kiIvEgAN~p-~T~eA  394 (535)
                      -.++||+|-|+..  ..|+.+.......  ++|++-|+-+ ++|+.
T Consensus        73 ~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~v  118 (135)
T PF01488_consen   73 LQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPEV  118 (135)
T ss_dssp             HHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TTC
T ss_pred             HhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChhh
Confidence            3589999999774  4778887777754  6999999754 56553

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07574 formate dehydrogenase; Provisional

Probab=96.08  E-value=0.018  Score=62.03  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=71.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|++|.|.|||++|+.+|+.|...|++|++        ||+..  .+.+..    ...       +.+....  +++ 
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~--------~dr~~--~~~~~~----~~~-------g~~~~~~l~ell-  246 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY--------TDRHR--LPEEVE----QEL-------GLTYHVSFDSLV-  246 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC--CchhhH----hhc-------CceecCCHHHHh-
Confidence            47899999999999999999999999999987        44443  322111    111       1222222  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCCCH--HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLTP--AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T~--eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+++....++ -.+++.-|-+++-.  ...+.|++.-|.
T Consensus       247 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~  304 (385)
T PRK07574        247 SVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA  304 (385)
T ss_pred             hcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence            57999998876     4556666666665 36888999998543  334567766553

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.08  E-value=0.017  Score=59.46  Aligned_cols=103  Identities=11%  Similarity=0.150  Sum_probs=69.2

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI  359 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI  359 (535)
                      +|.|.|.|++|..+|+.|.+.|.+|++             .|.+.+.+.+..+. |       ....+.  ++ ..+||+
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v-------------~d~~~~~~~~~~~~-g-------~~~~~s~~~~-~~~aDv   60 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQV-------------FDVNPQAVDALVDK-G-------ATPAASPAQA-AAGAEF   60 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHc-C-------CcccCCHHHH-HhcCCE
Confidence            799999999999999999999998876             34555666555443 1       222222  33 358999


Q ss_pred             Eeecccccc-----ccccc--cccc-cceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913         360 LVPAAIEKV-----IRKSN--ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       360 LiPaA~~~~-----It~~n--a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~vi  406 (535)
                      +|-|.....     +...+  ...+ +-++|++-...+  .+.+..+.|.++|+.|+
T Consensus        61 Vi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l  117 (296)
T PRK15461         61 VITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM  117 (296)
T ss_pred             EEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence            999877553     22211  2223 246777777765  35677788999998876

>PLN03139 formate dehydrogenase; Provisional

Probab=96.06  E-value=0.019  Score=61.98  Aligned_cols=106  Identities=17%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|++|.|.|+|++|+.+|+.|...|++|++        ||+..  .+.+..    .+.       +....+.  +++ 
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~--------~d~~~--~~~~~~----~~~-------g~~~~~~l~ell-  253 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY--------HDRLK--MDPELE----KET-------GAKFEEDLDAML-  253 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE--------ECCCC--cchhhH----hhc-------CceecCCHHHHH-
Confidence            58999999999999999999999999999987        34443  332211    111       1222223  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCCC-HH-HHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLT-PA-AHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T-~e-A~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++.-|=|++- .+ ..+.|++.-|.
T Consensus       254 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~  311 (386)
T PLN03139        254 PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG  311 (386)
T ss_pred             hhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence            46999998876     4455554445553 3688888888853 33 33566655553

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.04  E-value=0.024  Score=58.75  Aligned_cols=50  Identities=22%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||+..++          ..++  +++|++|+|.|-++ ||.-+|.+|.++||.|+.
T Consensus       138 ~~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv  188 (285)
T PRK10792        138 LRPCTPRGIMTLLE----------RYGI--DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTV  188 (285)
T ss_pred             CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEE
Confidence            35899999987776          4565  58999999999999 999999999999998765

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.02  E-value=0.019  Score=60.42  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      +|.|++|.|.|+|++|+.+|+.|...|++|++        ||+..   +  ...  ....+       ....+. +++ .
T Consensus       147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~--------~d~~~---~--~~~--~~~~~-------~~~~~l~ell-~  203 (333)
T PRK13243        147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILY--------YSRTR---K--PEA--EKELG-------AEYRPLEELL-R  203 (333)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCC---C--hhh--HHHcC-------CEecCHHHHH-h
Confidence            58999999999999999999999999999987        33332   1  110  11111       121122 444 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI  403 (535)
                      .|||++-|..     .+.|+.+....++ -.+++.-|=+++ ..+ ..+.|.+.-|
T Consensus       204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i  259 (333)
T PRK13243        204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWI  259 (333)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence            7899999986     3456665556664 368888888884 433 3456666544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.01  E-value=0.038  Score=57.35  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=42.8

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||..-++          ..++  +++|++|+|.|-| .||.-+|.+|.++||.|..
T Consensus       136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv  186 (285)
T PRK14191        136 FVPATPMGVMRLLK----------HYHI--EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSV  186 (285)
T ss_pred             CCCCcHHHHHHHHH----------HhCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEE
Confidence            46899999876666          4565  5899999999999 9999999999999999865

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.00  E-value=0.14  Score=54.36  Aligned_cols=89  Identities=9%  Similarity=0.182  Sum_probs=62.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      ++++++|.|.|.|.+|..+|+.|.+.|++-|.|+.++-..       ++.+.+.              .+.+  + +..+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-------~~~~~~~--------------~~~~--~-~~~~  226 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-------LPYRTVV--------------REEL--S-FQDP  226 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-------cchhhhh--------------hhhh--h-cccC
Confidence            5899999999999999999999999998777777665311       1111100              0000  1 2357


Q ss_pred             ceEEeec-----cccccccccccccccceEEEecCCCC
Q psy1913         357 VDILVPA-----AIEKVIRKSNADKVQAKIIVEAANGP  389 (535)
Q Consensus       357 ~DILiPa-----A~~~~It~~na~~i~AkiIvEgAN~p  389 (535)
                      +||+|-|     +...+|+.+....+..|++++-|+..
T Consensus       227 ~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR  264 (338)
T PRK00676        227 YDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR  264 (338)
T ss_pred             CCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence            8999964     66778887777666567999998855

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=95.88  E-value=0.018  Score=61.32  Aligned_cols=105  Identities=23%  Similarity=0.310  Sum_probs=74.7

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK  327 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~  327 (535)
                      .--||.+.+-+|..+         .++  -+.||+++|.|||-||+..|..|.-.||+|+.             +++|+=
T Consensus       188 rYGtgqS~~DgI~Ra---------Tn~--liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViV-------------tEvDPI  243 (420)
T COG0499         188 RYGTGQSLLDGILRA---------TNV--LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIV-------------TEVDPI  243 (420)
T ss_pred             ccccchhHHHHHHhh---------hce--eecCceEEEecccccchHHHHHhhcCCCeEEE-------------EecCch
Confidence            345777777766633         222  37899999999999999999999999999998             888875


Q ss_pred             HHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEe
Q psy1913         328 DLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVE  384 (535)
Q Consensus       328 ~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvE  384 (535)
                      ..++..-+     +|   +.++-+=-....||||-|+. -++|+.+....++=-.|+.
T Consensus       244 ~AleA~Md-----Gf---~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~  293 (420)
T COG0499         244 RALEAAMD-----GF---RVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILA  293 (420)
T ss_pred             HHHHHhhc-----Cc---EEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEe
Confidence            55444322     22   22221101235699999998 8999999999997655553

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.86  E-value=0.018  Score=63.49  Aligned_cols=197  Identities=11%  Similarity=0.080  Sum_probs=109.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~  356 (535)
                      .+|.|+|.|+.|..+|+.|.+.|.+|++             -|.+.+...++.+.... .++. ....+.  ++..  .+
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v-------------~dr~~~~~~~l~~~~~~-~g~~-i~~~~s~~e~v~~l~~   66 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISV-------------YNRTYEKTEEFVKKAKE-GNTR-VKGYHTLEELVNSLKK   66 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHhhhh-cCCc-ceecCCHHHHHhcCCC
Confidence            3799999999999999999999999887             44666776665543110 0110 111122  4443  26


Q ss_pred             ceEEeeccccccccccc----ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913         357 VDILVPAAIEKVIRKSN----ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH  429 (535)
Q Consensus       357 ~DILiPaA~~~~It~~n----a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~  429 (535)
                      +|+++-|........+.    ++.+. -++|+++.|.-  .|.+-.+.|.++||.|+=  .--+||.--  .+.=+   .
T Consensus        67 ~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld--apVSGG~~g--A~~G~---~  139 (470)
T PTZ00142         67 PRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG--MGVSGGEEG--ARYGP---S  139 (470)
T ss_pred             CCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc--CCCCCCHHH--HhcCC---E
Confidence            89777775544333333    33343 48999999985  466667789999999872  233444321  11111   1


Q ss_pred             ccccccccccchh---hHHHHHHhhhhhhhhhhhhh-hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         430 SSLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKK-IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK  505 (535)
Q Consensus       430 ~~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~  505 (535)
                      +-.|    . +++   +.+.+++.|..+..   +.. ..-.-+.-...++      ..|+..++..|-.++-+.++++++
T Consensus       140 lm~G----G-~~~a~~~~~piL~~ia~~~~---~~~~~~~~G~~GaGh~v------KmvhN~ie~~~m~~iaEa~~l~~~  205 (470)
T PTZ00142        140 LMPG----G-NKEAYDHVKDILEKCSAKVG---DSPCVTYVGPGSSGHYV------KMVHNGIEYGDMQLISESYKLMKH  205 (470)
T ss_pred             EEEe----C-CHHHHHHHHHHHHHHhhhcC---CCCeEEEECCCCHHHHH------HHHhHHHHHHHHHHHHHHHHHHHh
Confidence            1111    1 221   12222333221100   000 0000011112222      479999999999999999999984


Q ss_pred             -cCCCCCHHHH
Q psy1913         506 -SDNKLDLRNA  515 (535)
Q Consensus       506 -~~~~~~lR~A  515 (535)
                       .  ++|..+-
T Consensus       206 ~~--gl~~~~l  214 (470)
T PTZ00142        206 IL--GMSNEEL  214 (470)
T ss_pred             hc--CCCHHHH
Confidence             5  3665543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.77  E-value=0.03  Score=57.23  Aligned_cols=105  Identities=11%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|.+|..+|+.|.+.|.+|++        ||     .+.+.+.+..+. |       ....+.  +++ .+||
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~--------~d-----~~~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d   60 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVV--------YD-----RNPEAVAEVIAA-G-------AETASTAKAVA-EQCD   60 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEE--------Ec-----CCHHHHHHHHHC-C-------CeecCCHHHHH-hcCC
Confidence            4799999999999999999999999876        33     444554444332 1       222222  333 4799


Q ss_pred             EEeecccccccccc-------cccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         359 ILVPAAIEKVIRKS-------NADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       359 ILiPaA~~~~It~~-------na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      +++-|.........       -.+.++ -++|+......  ++.+..+.+.++|+.++.
T Consensus        61 ~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d  119 (296)
T PRK11559         61 VIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD  119 (296)
T ss_pred             EEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            99999764332111       122333 36788766554  234566678888987643

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.77  E-value=0.026  Score=58.18  Aligned_cols=104  Identities=12%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c-cc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D-KV  357 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~-~~  357 (535)
                      +|.|+|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..+ .|       ....+.  ++.. . .|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v-------------~dr~~~~~~~~~~-~g-------~~~~~s~~~~~~~~~~a   60 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVG-------------YDVNQEAVDVAGK-LG-------ITARHSLEELVSKLEAP   60 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHH-CC-------CeecCCHHHHHHhCCCC
Confidence            699999999999999999999999876             3345555555433 22       222222  3432 2 37


Q ss_pred             eEEeeccccccccccc----ccccc-ceEEEecCCC-C-CCHHHHHHHHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSN----ADKVQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~n----a~~i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~vi  406 (535)
                      |+++-|........+-    .+.++ -++|++-++. | .+.+..+.|.++|+.|+
T Consensus        61 dvVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~v  116 (299)
T PRK12490         61 RTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV  116 (299)
T ss_pred             CEEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence            8998887655222222    22232 3688888766 4 45666778899999876

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.76  E-value=0.03  Score=58.50  Aligned_cols=107  Identities=18%  Similarity=0.288  Sum_probs=70.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      +|.|+||.|.|||++|+.+|+.+...|++|++        ||+.+  -..        ..    ++   +..+- +++ .
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~--------~d~~~--~~~--------~~----~~---~~~~l~ell-~  195 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY--------YSTSG--KNK--------NE----EY---ERVSLEELL-K  195 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE--------ECCCc--ccc--------cc----Cc---eeecHHHHh-h
Confidence            58999999999999999999999999999998        34333  110        00    01   11111 444 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCceeeccc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVLIIPDI  409 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~viPD~  409 (535)
                      .|||++-+..     .+.|+.+...+++ --+++.-|=|++ ..+ ..+.|++.-|...=|+
T Consensus       196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV  257 (311)
T PRK08410        196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDV  257 (311)
T ss_pred             cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEec
Confidence            6898888765     3456666666665 468888999995 333 3366766555433444

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.71  E-value=0.26  Score=55.67  Aligned_cols=177  Identities=12%  Similarity=0.149  Sum_probs=119.2

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913         172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT  251 (535)
Q Consensus       172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT  251 (535)
                      .+..|...+...|++++..  -+||..-|-=.|++..-.  --+.+.|+..        .-|+-.          --.-|
T Consensus       243 v~g~eY~~~~defv~av~~--~fGp~~~I~~EDf~~~~a--f~iL~ryr~~--------i~~FnD----------DiQGT  300 (581)
T PLN03129        243 LTGEEYDELVDEFMEAVKQ--RWGPKVLVQFEDFANKNA--FRLLQRYRTT--------HLCFND----------DIQGT  300 (581)
T ss_pred             CchhhHHHhHHHHHHHHHH--HhCCccEEehhhcCCccH--HHHHHHhccC--------CCEecc----------ccchH
Confidence            4567778888999999886  688888788888886542  2355777421        112211          12445


Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH-----CCC------eEEEEecCCceEeCCC
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR-----GRA------KCLAIVEHDTAIVPDK  320 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e-----~Ga------kVVaVsD~~G~iynp~  320 (535)
                      |-=+..++.+++      +..|.  .|+..+|+|.|.|..|..+|++|.+     .|.      +=+-+.|++|-|++..
T Consensus       301 aaV~lAgll~A~------r~~g~--~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r  372 (581)
T PLN03129        301 AAVALAGLLAAL------RATGG--DLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSR  372 (581)
T ss_pred             HHHHHHHHHHHH------HHhCC--chhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCC
Confidence            555555555444      34564  4899999999999999999999987     476      4557889999999877


Q ss_pred             CCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-cccccccccccc----cceEEEecCCC
Q psy1913         321 GTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKV----QAKIIVEAANG  388 (535)
Q Consensus       321 G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i----~AkiIvEgAN~  388 (535)
                      ..+|+.... .+.+..         .....  +.+ .+++||||=++. ++.+|++-+..+    .-.||---+|-
T Consensus       373 ~~~l~~~k~-~fa~~~---------~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP  438 (581)
T PLN03129        373 KDSLQPFKK-PFAHDH---------EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP  438 (581)
T ss_pred             CccChHHHH-HHHhhc---------ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            511432221 222221         11122  333 568999999996 799999988888    44788888885

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.70  E-value=0.034  Score=56.92  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHH--CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRR--GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e--~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      ++..||.|.|+|.+|+..++.|.+  .+++|++|.|.            +.+...+..++.+.      ....+.  +++
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr------------~~~~a~~~a~~~g~------~~~~~~~eell   65 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR------------DPQRHADFIWGLRR------PPPVVPLDQLA   65 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC------------CHHHHHHHHHhcCC------CcccCCHHHHh
Confidence            566899999999999999999986  48899987653            34555555444331      122333  555


Q ss_pred             cccceEEeecccccccccccccc-cc--ceEEEecCCCC-CCHHHHHHHHhCCcee-ec
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGP-LTPAAHAMLLKKNVLI-IP  407 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p-~T~eA~~iL~~rGI~v-iP  407 (535)
                       .++|+++-|+..... .+-+.. ++  ..++++..-.. ...+..+..+++|+.+ +|
T Consensus        66 -~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~  122 (271)
T PRK13302         66 -THADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP  122 (271)
T ss_pred             -cCCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence             478999999976554 333322 22  35676632211 1234445567888765 55

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.65  E-value=0.01  Score=56.20  Aligned_cols=34  Identities=24%  Similarity=0.221  Sum_probs=28.2

Q ss_pred             CCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       275 ~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ..++...+|+|.|.|+||..+++.|...|++++.
T Consensus        15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~   48 (168)
T PF01262_consen   15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVV   48 (168)
T ss_dssp             TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEE
T ss_pred             CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEe
Confidence            3456678999999999999999999999999998

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=95.60  E-value=0.23  Score=51.32  Aligned_cols=187  Identities=16%  Similarity=0.139  Sum_probs=103.0

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceE
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDI  359 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DI  359 (535)
                      +|.|+|.|++|..+|+.|.+.|..|+. .|            .+.. ..+.. +.       ++...+.  ++ ...||+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v-~~------------~~~~-~~~~~-~~-------g~~~~~s~~~~-~~~adv   58 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHV-TT------------IGPV-ADELL-SL-------GAVSVETARQV-TEASDI   58 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEE-Ee------------CCHh-HHHHH-Hc-------CCeecCCHHHH-HhcCCE
Confidence            699999999999999999999998864 22            3332 22222 22       2222222  33 358899


Q ss_pred             Eeeccccc-----cccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913         360 LVPAAIEK-----VIRKSN--ADKV-QAKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH  429 (535)
Q Consensus       360 LiPaA~~~-----~It~~n--a~~i-~AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~  429 (535)
                      ++-|-...     ++..++  +..+ .-++|++-... | ++.+..+.+.++|+.|+--  -=+||...  .|  +    
T Consensus        59 Vi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vda--PVsGg~~~--a~--~----  128 (292)
T PRK15059         59 IFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDA--PVSGGEIG--AR--E----  128 (292)
T ss_pred             EEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEe--cCCCCHHH--Hh--c----
Confidence            99886533     222221  2222 23677766544 3 4566778899999987753  23555531  11  1    


Q ss_pred             cccccccccc--chhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy1913         430 SSLGRMSFGY--DKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSD  507 (535)
Q Consensus       430 ~~~grl~~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~  507 (535)
                         |.|...-  +++    .++.+...|.. ++.++...-+......+      .+++.-|-..+..++.+...++++++
T Consensus       129 ---g~l~~~~gG~~~----~~~~~~p~l~~-~g~~~~~~G~~G~g~~~------Kl~~N~l~~~~~~a~~Ea~~la~~~G  194 (292)
T PRK15059        129 ---GTLSIMVGGDEA----VFERVKPLFEL-LGKNITLVGGNGDGQTC------KVANQIIVALNIEAVSEALLFASKAG  194 (292)
T ss_pred             ---CcEEEEEcCCHH----HHHHHHHHHHH-HcCCcEEeCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               2211111  222    12222222221 12211111112222222      36778888777888999999999985


Q ss_pred             CCCCHHHHHh
Q psy1913         508 NKLDLRNAAY  517 (535)
Q Consensus       508 ~~~~lR~AAy  517 (535)
                        +|+.+..-
T Consensus       195 --ld~~~~~~  202 (292)
T PRK15059        195 --ADPVRVRQ  202 (292)
T ss_pred             --CCHHHHHH
Confidence              78776543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.57  E-value=0.03  Score=57.07  Aligned_cols=105  Identities=16%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      ++|.|.|+|++|...++.|.+.  +..+++|.|.            +.+...+..+..+       ...++.  +++ .+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~------------~~~~a~~~a~~~~-------~~~~~~~~ell-~~   61 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR------------NLEKAENLASKTG-------AKACLSIDELV-ED   61 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC------------CHHHHHHHHHhcC-------CeeECCHHHHh-cC
Confidence            4899999999999999998875  5788887764            3444444444322       222333  566 68


Q ss_pred             ceEEeecccccccccccccc-cc--ceEEEecC----CCCCCHHHHHHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADK-VQ--AKIIVEAA----NGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~-i~--AkiIvEgA----N~p~T~eA~~iL~~rGI~vi  406 (535)
                      +|+++.|+..... .+-+.. ++  ..+|++..    +-+...+..+..+++|+.+.
T Consensus        62 ~DvVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~  117 (265)
T PRK13304         62 VDLVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY  117 (265)
T ss_pred             CCEEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence            9999999975554 333332 22  35666532    22223345556777886543

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.54  E-value=0.08  Score=57.42  Aligned_cols=122  Identities=14%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi  326 (535)
                      .-||-=+..++.+++      +..|.  +|+..+|++.|.|..|-.++++|...|.+  =|-+.|++|-+|+.. .|++.
T Consensus       176 qGTaiv~lA~llnal------k~~gk--~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r-~~~~~  246 (432)
T COG0281         176 QGTAIVTLAALLNAL------KLTGK--KLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGR-EDLTM  246 (432)
T ss_pred             cHHHHHHHHHHHHHH------HHhCC--CccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCC-ccccc
Confidence            345555555555443      45674  58999999999999999999999999986  677899999999766 23322


Q ss_pred             H-HHHHHH-HHcCCcccCCCCcccCCCCccccceEEeeccccccccccccccccc-eEEEecCCC
Q psy1913         327 K-DLHTYK-ITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANG  388 (535)
Q Consensus       327 ~-~L~~~~-~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~  388 (535)
                      . ...++. +.++..        .. +.--..+||||=|+..+++|++-+.++.. .+|---||-
T Consensus       247 ~~~k~~~a~~~~~~~--------~~-~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP  302 (432)
T COG0281         247 NQKKYAKAIEDTGER--------TL-DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANP  302 (432)
T ss_pred             chHHHHHHHhhhccc--------cc-cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCC
Confidence            2 222222 122211        00 12346899999999999999999888854 677777774

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.44  E-value=0.024  Score=62.48  Aligned_cols=193  Identities=11%  Similarity=0.039  Sum_probs=107.3

Q ss_pred             EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc--ccce
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF--DKVD  358 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~--~~~D  358 (535)
                      |.|.|+|+.|..+|+.|.+.|.+|++             .|.+.+.+.+..++.+.-.+   ....+.  ++..  .+||
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v-------------~drt~~~~~~l~~~~~~g~~---~~~~~s~~e~v~~l~~~d   65 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSV-------------YNRTPEKTDEFLAEHAKGKK---IVGAYSIEEFVQSLERPR   65 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEE-------------EeCCHHHHHHHHhhccCCCC---ceecCCHHHHHhhcCCCC
Confidence            78999999999999999999999887             44666777666654211000   111111  3332  3689


Q ss_pred             EEeecccccccccccc----cccc-ceEEEecCCC-C-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccc
Q psy1913         359 ILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANG-P-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS  431 (535)
Q Consensus       359 ILiPaA~~~~It~~na----~~i~-AkiIvEgAN~-p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~  431 (535)
                      +++-|...+....+-+    +.++ -++|+++.|. | .|.+..+.|.++||.++-  .--+||+..  .+.-+   .+-
T Consensus        66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd--apVsGG~~g--A~~G~---~im  138 (467)
T TIGR00873        66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG--SGVSGGEEG--ARKGP---SIM  138 (467)
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc--CCCCCCHHH--HhcCC---cCC
Confidence            8888866543333332    3332 4799999995 4 456666779999999873  233555521  11111   111


Q ss_pred             ccccccccchh---hHHHHHHhhhhhhhhhhhhh-hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Q psy1913         432 LGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKK-IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAE-KS  506 (535)
Q Consensus       432 ~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~-~~  506 (535)
                      .|    . +++   +.+.+++.+....   .+.. .-..-+.-...++      ..|+..++..|..++-+.+.+++ +.
T Consensus       139 ~G----G-~~~a~~~~~p~L~~ia~~~---~~~~~~~~~G~~GsG~~v------KmvhN~i~~~~m~~~aEa~~ll~~~~  204 (467)
T TIGR00873       139 PG----G-SAEAWPLVAPIFQKIAAKV---DGEPCCTWIGPDGAGHYV------KMVHNGIEYGDMQLICEAYDILKDGL  204 (467)
T ss_pred             CC----C-CHHHHHHHHHHHHHHhhhc---CCCCceEEECCcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11    1 222   1222222222110   0000 0000111122233      37999999999999999999886 45


Q ss_pred             CCCCCHHH
Q psy1913         507 DNKLDLRN  514 (535)
Q Consensus       507 ~~~~~lR~  514 (535)
                      +  +|..+
T Consensus       205 g--~~~~~  210 (467)
T TIGR00873       205 G--LSNEE  210 (467)
T ss_pred             C--CCHHH
Confidence            4  66544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.41  E-value=0.053  Score=56.60  Aligned_cols=101  Identities=19%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .|.|+||.|.|+|++|+.+|+.|...|++|++..-+.    .+.|  ..                   ....+. +++ .
T Consensus       119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~----~~~~--~~-------------------~~~~~l~ell-~  172 (303)
T PRK06436        119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY----VNDG--IS-------------------SIYMEPEDIM-K  172 (303)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC----cccC--cc-------------------cccCCHHHHH-h
Confidence            4789999999999999999999998999999843210    1112  10                   000111 444 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI  403 (535)
                      .||+++-|..     .+.|+.+....++ -.+++.-+=+++ .. +..+.|.++-+
T Consensus       173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i  228 (303)
T PRK06436        173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND  228 (303)
T ss_pred             hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence            7899998876     3455555555554 367888888874 33 34566776544

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.40  E-value=0.1  Score=54.55  Aligned_cols=101  Identities=19%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      +|.|+||.|.|||++|+.+|+.+...|++|+++.        +..  -+  ..      .        ....+- +++ .
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~--------~~~--~~--~~------~--------~~~~~l~ell-~  196 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE--------HKG--AS--VC------R--------EGYTPFEEVL-K  196 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC--------CCc--cc--cc------c--------cccCCHHHHH-H
Confidence            5899999999999999999999999999999842        211  00  00      0        000111 344 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      .|||++-|..     .+.|+.+...+++ --+++.-|=|++ ..+| .+.|.+.-|.
T Consensus       197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~  253 (314)
T PRK06932        197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA  253 (314)
T ss_pred             hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence            6899888765     4455566666664 468888888884 4333 3566665553

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.089  Score=54.47  Aligned_cols=50  Identities=22%  Similarity=0.252  Sum_probs=42.9

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||..-++          ..+.  +++|++|+|.|.+ .||+.+|.+|...|+.|..
T Consensus       131 ~~PcTp~av~~ll~----------~~~i--~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv  181 (279)
T PRK14178        131 FAPCTPNGIMTLLH----------EYKI--SIAGKRAVVVGRSIDVGRPMAALLLNADATVTI  181 (279)
T ss_pred             CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCccccHHHHHHHHhCCCeeEE
Confidence            46899999886666          4565  5899999999998 9999999999999998876

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.36  E-value=0.12  Score=49.60  Aligned_cols=123  Identities=17%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      |+.-.+..++      ..++++|.  ++++++++|.|. |.+|+.+++.|.+.|++|+.++             -+.+.+
T Consensus         7 ta~aav~~~~------~~l~~~~~--~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~-------------R~~~~~   65 (194)
T cd01078           7 TAAAAVAAAG------KALELMGK--DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVG-------------RDLERA   65 (194)
T ss_pred             HHHHHHHHHH------HHHHHhCc--CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc-------------CCHHHH
Confidence            4444444444      33445564  579999999996 9999999999999999888743             334444


Q ss_pred             HHHHHHcCCcccCCCCcc--cCC--CCc--cccceEEeeccccccccccccc-ccc-ceEEEecCCCC-CCHHHH
Q psy1913         330 HTYKITKGTIKGYPGTKS--APT--DIM--FDKVDILVPAAIEKVIRKSNAD-KVQ-AKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~--i~~--ell--~~~~DILiPaA~~~~It~~na~-~i~-AkiIvEgAN~p-~T~eA~  395 (535)
                      .+..+......+. ....  ..+  ++.  -.+||++|-|+..+..+..... ..+ .++|++-+..| ++++..
T Consensus        66 ~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~  139 (194)
T cd01078          66 QKAADSLRARFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGI  139 (194)
T ss_pred             HHHHHHHHhhcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcccc
Confidence            4443321100000 0001  111  111  1479999998876553222222 222 36888876666 666543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK13529 malate dehydrogenase; Provisional

Probab=95.33  E-value=0.5  Score=53.32  Aligned_cols=185  Identities=12%  Similarity=0.163  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913         172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT  251 (535)
Q Consensus       172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT  251 (535)
                      .+..|...+...|+.++..  .. |..-|==.|++..-  ---|.+.|+...        -|+-.          --.-|
T Consensus       218 ~~g~eY~~f~defv~av~~--~~-P~~~I~~EDf~~~~--af~iL~ryr~~i--------~~FnD----------DiQGT  274 (563)
T PRK13529        218 IRGEEYDEFVDEFVQAVKR--RF-PNALLQFEDFAQKN--ARRILERYRDEI--------CTFND----------DIQGT  274 (563)
T ss_pred             CchHHHHHHHHHHHHHHHH--hC-CCeEEehhhcCCch--HHHHHHHhccCC--------Ceecc----------ccchH
Confidence            4567788889999998886  33 66666677887643  234567775411        12211          12345


Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCC
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKG  321 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G  321 (535)
                      |-=+..++.+++      +..|.  .|+..||+|.|.|..|..+|++|.+    .|.      +=+-+.|++|-|+...+
T Consensus       275 aaV~LAgll~A~------r~~g~--~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~  346 (563)
T PRK13529        275 GAVTLAGLLAAL------KITGE--PLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP  346 (563)
T ss_pred             HHHHHHHHHHHH------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCC
Confidence            555555555444      34564  4899999999999999999999986    687      45678999999998875


Q ss_pred             CCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-cccccccccccccc----eEEEecCCCC
Q psy1913         322 TEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQA----KIIVEAANGP  389 (535)
Q Consensus       322 ~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~A----kiIvEgAN~p  389 (535)
                       ||+.... .+.+....+.+++.......  +++ .++.||||=++. ++++|++-+..+..    .||---+|--
T Consensus       347 -~l~~~k~-~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt  420 (563)
T PRK13529        347 -DLLDFQK-PYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPT  420 (563)
T ss_pred             -cchHHHH-HHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcC
Confidence             4433222 23322222222211111112  333 568899999998 79999998888853    6888888743

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.17  E-value=0.011  Score=53.33  Aligned_cols=91  Identities=11%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      .+|+|.|+ |++|+.+++.+.+ .+..++++.|++..  +-.|  -|+.++.... .       .+....+.  +++.. 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--~~~g--~d~g~~~~~~-~-------~~~~v~~~l~~~~~~-   67 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--AKVG--KDVGELAGIG-P-------LGVPVTDDLEELLEE-   67 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--TTTT--SBCHHHCTSS-T--------SSBEBS-HHHHTTH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--cccc--chhhhhhCcC-C-------cccccchhHHHhccc-
Confidence            37999999 9999999999998 89999999998762  1235  4444432211 0       02222233  45555 


Q ss_pred             ceEEeeccccccccccccccc---cceEEEec
Q psy1913         357 VDILVPAAIEKVIRKSNADKV---QAKIIVEA  385 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i---~AkiIvEg  385 (535)
                      |||+|-++....+. +|+...   +.++|++-
T Consensus        68 ~DVvIDfT~p~~~~-~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   68 ADVVIDFTNPDAVY-DNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             -SEEEEES-HHHHH-HHHHHHHHHT-EEEEE-
T ss_pred             CCEEEEcCChHHhH-HHHHHHHhCCCCEEEEC
Confidence            99999999544332 233222   34666543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.15  E-value=0.33  Score=49.74  Aligned_cols=185  Identities=13%  Similarity=0.120  Sum_probs=98.4

Q ss_pred             EEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccceEEee
Q psy1913         285 VQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVP  362 (535)
Q Consensus       285 IQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiP  362 (535)
                      |.|+|++|..+|+.|.+.|.+|+.             .|.+.+.+.+..+. |       ....+.  ++ ..+|||+|-
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~-g-------~~~~~s~~~~-~~~advVil   58 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRV-------------FDLFPDAVEEAVAA-G-------AQAAASPAEA-AEGADRVIT   58 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHHc-C-------CeecCCHHHH-HhcCCEEEE
Confidence            469999999999999999999876             33555555554432 2       221222  33 347899998


Q ss_pred             ccccccccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccc
Q psy1913         363 AAIEKVIRK-------SNADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSL  432 (535)
Q Consensus       363 aA~~~~It~-------~na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~  432 (535)
                      |........       .-++.++ -++|+......  ++.+..+.+.++|+.|+---  =+||+..-  + -..+ .+..
T Consensus        59 ~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP--v~Gg~~~a--~-~g~l-~~~~  132 (288)
T TIGR01692        59 MLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAP--VSGGVGGA--R-AGTL-TFMV  132 (288)
T ss_pred             eCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECC--CCCCHHHH--h-hCcE-EEEE
Confidence            877533211       1122333 25666666443  34566678889999886432  24665321  1 1111 1101


Q ss_pred             cccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy1913         433 GRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDL  512 (535)
Q Consensus       433 grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~l  512 (535)
                      |    . +++..    +.+...|.. ++.++....+......      ..+++.-+......++.+...++++++  +|.
T Consensus       133 g----g-~~~~~----~~~~~~l~~-~g~~~~~~g~~g~g~~------~Kl~~n~~~~~~~~~~~Ea~~la~~~G--ld~  194 (288)
T TIGR01692       133 G----G-VAEEF----AAAEPVLGP-MGRNIVHCGDHGAGQA------AKICNNMLLGISMIGTAEAMALGEKLG--LDP  194 (288)
T ss_pred             C----C-CHHHH----HHHHHHHHH-hcCCeEeeCCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCH
Confidence            1    1 22111    111111111 1221111111122222      225666777777778889999999985  676


Q ss_pred             HHH
Q psy1913         513 RNA  515 (535)
Q Consensus       513 R~A  515 (535)
                      .+.
T Consensus       195 ~~~  197 (288)
T TIGR01692       195 KVL  197 (288)
T ss_pred             HHH
Confidence            553

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=95.15  E-value=0.048  Score=56.60  Aligned_cols=106  Identities=13%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      .+|+++|+|+.|+..|..|.+.|+.|..             .|.++++..+.....       |++..+. .=....|||
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v-------------~~r~~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDv   60 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTV-------------YNRTPEKAAELLAAA-------GATVAASPAEAAAEADV   60 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEE-------------EeCChhhhhHHHHHc-------CCcccCCHHHHHHhCCE
Confidence            4799999999999999999999999988             667777744444443       2333332 123468899


Q ss_pred             Eeeccc-----cccccccc--cccc-cceEEEecCC-CC-CCHHHHHHHHhCCceee
Q psy1913         360 LVPAAI-----EKVIRKSN--ADKV-QAKIIVEAAN-GP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       360 LiPaA~-----~~~It~~n--a~~i-~AkiIvEgAN-~p-~T~eA~~iL~~rGI~vi  406 (535)
                      +|-|-.     ..++.+++  +..+ +-++|+.-.. .| .+.+..+.++++|+.++
T Consensus        61 Vitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l  117 (286)
T COG2084          61 VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL  117 (286)
T ss_pred             EEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence            988743     44454422  2222 2355555544 45 45788888999999887

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.13  E-value=0.17  Score=52.35  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .+.|-+|+...++          ..+.  +++|++|+|.|.|+ ||+.++.+|.++|+. |.|+++
T Consensus       139 ~p~T~~gii~~L~----------~~~i--~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~  191 (283)
T PRK14192        139 GSATPAGIMRLLK----------AYNI--ELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS  191 (283)
T ss_pred             cCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence            5788899887776          3454  57999999999998 999999999999994 555543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.12  E-value=0.054  Score=58.30  Aligned_cols=155  Identities=17%  Similarity=0.212  Sum_probs=90.8

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..|.  +|.|+||.|.|+|+||+.+|+.|...|.+|++        |||..  -+          .+.     .....+
T Consensus       108 r~~g~--~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~--------~dp~~--~~----------~~~-----~~~~~~  160 (378)
T PRK15438        108 ERDGF--SLHDRTVGIVGVGNVGRRLQARLEALGIKTLL--------CDPPR--AD----------RGD-----EGDFRS  160 (378)
T ss_pred             ccCCC--CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCcc--cc----------ccc-----ccccCC
Confidence            34454  58999999999999999999999999999998        23321  00          000     001111


Q ss_pred             C-CCccccceEEeeccc---------ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-eeccccccccC
Q psy1913         350 T-DIMFDKVDILVPAAI---------EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL-IIPDIFANAGG  415 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~---------~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~-viPD~laNaGG  415 (535)
                      - +++ ..|||++-+..         .+.|+.+....++ -.+++..+=|++ ..+| .+.|++.-+. .+=|+.-+== 
T Consensus       161 L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP-  238 (378)
T PRK15438        161 LDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP-  238 (378)
T ss_pred             HHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCC-
Confidence            1 444 36899985543         2456677767775 479999999994 4444 3567665442 4445444322 


Q ss_pred             cchhhHhhhhcc----ccccccccccccchhhHHHHHHhhhhhhhhhhhh
Q psy1913         416 VTVSYFEWLKNI----SHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK  461 (535)
Q Consensus       416 VivSy~Ew~qn~----~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~  461 (535)
                      ..-+  +++.+.    .|+.+      ++.+........+.+.+.+.++.
T Consensus       239 ~~~~--~Ll~~~~i~TPHiAg------~s~e~~~~~~~~~~~~l~~~~~~  280 (378)
T PRK15438        239 ELNV--ELLKKVDIGTPHIAG------YTLEGKARGTTQVFEAYSKFIGH  280 (378)
T ss_pred             CCch--hhhhcCCEECCccCc------CcHHHHHHHHHHHHHHHHHHHcC
Confidence            1111  223332    45443      45555444445555555555554

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.09  E-value=0.13  Score=54.57  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++.++.   .|.+|+|.|+|-+|..+.++....|++|+|++
T Consensus       160 k~~~~~---pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~  197 (339)
T COG1064         160 KKANVK---PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT  197 (339)
T ss_pred             hhcCCC---CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEe
Confidence            345554   49999999999999999999999999999955

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.09  E-value=0.3  Score=56.99  Aligned_cols=125  Identities=17%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi  326 (535)
                      .-||-=+..++.+++      +..|.  +++..||+|.|.|..|..+|++|...|.+  =+-+.|++|.|+.....+++.
T Consensus       162 ~GTa~v~lA~l~na~------~~~~~--~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~  233 (752)
T PRK07232        162 HGTAIISAAALLNAL------ELVGK--KIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDE  233 (752)
T ss_pred             chHHHHHHHHHHHHH------HHhCC--ChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccH
Confidence            345555555555443      45564  48999999999999999999999999983  557899999999876312543


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCC--CCccccceEEeecccccccccccccccc-ceEEEecCCCC--CCHH
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--LTPA  393 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~T~e  393 (535)
                      ... .+.+.+          ....  +.+.. +||||=++.++.+|++-+..+. -.||---||--  +|||
T Consensus       234 ~k~-~~a~~~----------~~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~  293 (752)
T PRK07232        234 WKA-AYAVDT----------DARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPE  293 (752)
T ss_pred             HHH-HHhccC----------CCCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHH
Confidence            332 122111          1112  44444 8999999999999999888884 36777777753  4554

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.08  E-value=0.051  Score=55.13  Aligned_cols=109  Identities=14%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      .+|+|.|+ |.+|+..++.+.+ .+.++++++|.+..     .  ..     .. ...       +....++  +++. +
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~-----~--~~-----~~-~~~-------~i~~~~dl~~ll~-~   60 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS-----P--LV-----GQ-GAL-------GVAITDDLEAVLA-D   60 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-----c--cc-----cc-CCC-------CccccCCHHHhcc-C
Confidence            58999998 9999999999886 57999999986521     1  10     00 111       1112233  4554 7


Q ss_pred             ceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHH---HhCCceeecccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAML---LKKNVLIIPDIFAN  412 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL---~~rGI~viPD~laN  412 (535)
                      +|++|-|+.++.. .+++...   ...+|++ --+-...+++++.   ...++++.|.+..-
T Consensus        61 ~DvVid~t~p~~~-~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g  120 (257)
T PRK00048         61 ADVLIDFTTPEAT-LENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVIAPNFSIG  120 (257)
T ss_pred             CCEEEECCCHHHH-HHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEEECcchHH
Confidence            9999999976654 5555444   3567777 2233334454443   33567788876543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=95.07  E-value=0.11  Score=54.42  Aligned_cols=99  Identities=20%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      +|.|+||.|.|||++|+.+|+.|...|++|++..        +.+  -. .                .....+- +++ .
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~--------~~~--~~-~----------------~~~~~~l~ell-~  196 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ--------LPG--RP-A----------------RPDRLPLDELL-P  196 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC--------CCC--Cc-c----------------cccccCHHHHH-H
Confidence            5899999999999999999999999999999843        222  00 0                0001111 333 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI  403 (535)
                      .|||++-+..     .+.|+.+...+++ --+++.-|=|++ ..+| .+.|++.-|
T Consensus       197 ~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i  252 (317)
T PRK06487        197 QVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHL  252 (317)
T ss_pred             hCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence            6788887765     4456666666665 368888888884 3333 356665544

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.03  E-value=0.089  Score=50.19  Aligned_cols=51  Identities=25%  Similarity=0.229  Sum_probs=37.7

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      +-.+.|..|+...++          ..+.  +++||+|+|.|-++ ||.-++.+|.++|+.|..
T Consensus        14 ~~~PcTp~aii~lL~----------~~~~--~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~   65 (160)
T PF02882_consen   14 GFVPCTPLAIIELLE----------YYGI--DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTI   65 (160)
T ss_dssp             SS--HHHHHHHHHHH----------HTT---STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEE
T ss_pred             CCcCCCHHHHHHHHH----------hcCC--CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEe
Confidence            346889999887666          3554  48999999999875 999999999999999876

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.02  E-value=0.062  Score=56.25  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=64.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .+.|+||.|.|+|++|+.+|+.|...|++|+++.-..-.   ..|  ++               .+.   ....  +++ 
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~---~~~--~~---------------~~~---~~~~l~e~l-  188 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS---WPG--VQ---------------SFA---GREELSAFL-  188 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC---CCC--ce---------------eec---ccccHHHHH-
Confidence            478999999999999999999999999999885321100   001  10               000   0111  222 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCCCC-HH-HHHHHHhCCc
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPLT-PA-AHAMLLKKNV  403 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~T-~e-A~~iL~~rGI  403 (535)
                      .+|||++-|...     +.|+.+-...++ -.+++.-|-|++- .+ .-+.|.+.-|
T Consensus       189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i  245 (312)
T PRK15469        189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV  245 (312)
T ss_pred             hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe
Confidence            478999888663     344444444554 3688888999853 33 3356766655

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.97  E-value=0.058  Score=56.88  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .|.|++|.|.|+|++|+.+|+.|...|.+|++..             .+.+.....            .+..+.  +++ 
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d-------------~~~~~~~~~------------~~~~~~l~ell-  196 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD-------------AYPNKDLDF------------LTYKDSVKEAI-  196 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe-------------CChhHhhhh------------hhccCCHHHHH-
Confidence            5789999999999999999999999999999832             222211110            011112  333 


Q ss_pred             ccceEEeeccccc-----ccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913         355 DKVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV  403 (535)
Q Consensus       355 ~~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI  403 (535)
                      ..||+++-|....     .++.+....++ -.+++..+=|++ .. ...+.|.+.-|
T Consensus       197 ~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i  253 (330)
T PRK12480        197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTL  253 (330)
T ss_pred             hcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCe
Confidence            4889999887743     45444445553 368999999995 33 33456766555

>PLN02928 oxidoreductase family protein

Probab=94.90  E-value=0.12  Score=54.89  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC--CCcccCC--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP--GTKSAPT--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~--~a~~i~~--el  352 (535)
                      .|.|+||.|.|||++|+.+|+.|...|++|++.        |+..   +........-....+..+.  ... ...  ++
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~--------dr~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~el  223 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT--------RRSW---TSEPEDGLLIPNGDVDDLVDEKGG-HEDIYEF  223 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE--------CCCC---ChhhhhhhccccccccccccccCc-ccCHHHH
Confidence            589999999999999999999999999999983        3322   0000000000000000000  011 112  33


Q ss_pred             ccccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913         353 MFDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV  403 (535)
Q Consensus       353 l~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI  403 (535)
                      + ..|||++-|..     .+.|+.+....++ -.+++.-|=|++ ..+| .+.|.+.-|
T Consensus       224 l-~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i  281 (347)
T PLN02928        224 A-GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL  281 (347)
T ss_pred             H-hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence            3 36899999876     5566666666665 368899999995 4433 355655444

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.83  E-value=0.03  Score=48.94  Aligned_cols=35  Identities=29%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++|++|.|.|.|+||..-++.|.+.|++|+.||.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~   38 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP   38 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence            36899999999999999999999999999999884

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.82  E-value=0.19  Score=53.11  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             EEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-CCC------------
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-YPG------------  344 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-~~~------------  344 (535)
                      +|+|.|||.+|+.+.+.|.+.+    ..|++|.|.            ...+.+.|..+..++-+ |++            
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~------------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~   68 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL------------ADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN   68 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC------------CCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC
Confidence            5899999999999999998864    899998763            22333445544444322 211            


Q ss_pred             Ccc---c---CC---CCccccceEEeeccccccccccccccc---cceEEEec
Q psy1913         345 TKS---A---PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEA  385 (535)
Q Consensus       345 a~~---i---~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEg  385 (535)
                      .+.   .   ++   .+-+.++|+.+.|+... .+.+-+...   .|+.|.-.
T Consensus        69 g~~i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~S  120 (325)
T TIGR01532        69 GDCIRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFS  120 (325)
T ss_pred             CeEEEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEec
Confidence            111   1   12   22247999999999654 555554433   24444444

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.15  Score=52.94  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.|..||...++          ..|+  +++|++|+|.| ...||+-+|.+|.++||.|..
T Consensus       138 ~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~  187 (284)
T PRK14190        138 LPCTPHGILELLK----------EYNI--DISGKHVVVVGRSNIVGKPVGQLLLNENATVTY  187 (284)
T ss_pred             CCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            5889999876666          4566  58999999999 577899999999999998875

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=94.80  E-value=0.3  Score=54.12  Aligned_cols=122  Identities=15%  Similarity=0.184  Sum_probs=76.9

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      --+.|+..+++          +.+.  +++++++.|.|.|.+|+.++..|.+.|++|+. .+            -+.+.+
T Consensus       314 TD~~G~~~~l~----------~~~~--~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i-~~------------R~~~~~  368 (477)
T PRK09310        314 TDGEGLFSLLK----------QKNI--PLNNQHVAIVGAGGAAKAIATTLARAGAELLI-FN------------RTKAHA  368 (477)
T ss_pred             cCHHHHHHHHH----------hcCC--CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHH
Confidence            35778777776          2343  46899999999999999999999999998765 22            344455


Q ss_pred             HHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCC-CCHHHHHHHHhCCceeec
Q psy1913         330 HTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T~eA~~iL~~rGI~viP  407 (535)
                      .+..+..+.     ....... .-+ .++|++|-|+..+..-.+   .+ .++|++-.=+| .|+-. +..+++|+.++.
T Consensus       369 ~~la~~~~~-----~~~~~~~~~~l-~~~DiVInatP~g~~~~~---~l-~~~v~D~~Y~P~~T~ll-~~A~~~G~~~~~  437 (477)
T PRK09310        369 EALASRCQG-----KAFPLESLPEL-HRIDIIINCLPPSVTIPK---AF-PPCVVDINTLPKHSPYT-QYARSQGSSIIY  437 (477)
T ss_pred             HHHHHHhcc-----ceechhHhccc-CCCCEEEEcCCCCCcchh---HH-hhhEEeccCCCCCCHHH-HHHHHCcCEEEC
Confidence            444443210     0000111 112 479999999875542222   22 25888888777 57643 556788876653

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.79  E-value=0.035  Score=50.94  Aligned_cols=72  Identities=15%  Similarity=0.149  Sum_probs=42.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      -.+|.|+|.|+||.++++.|.+.|..|++|...+            .....+.....      +.....+. +++ .++|
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs------------~~sa~~a~~~~------~~~~~~~~~~~~-~~aD   70 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS------------PASAERAAAFI------GAGAILDLEEIL-RDAD   70 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH------------H-HHHHHHC--------TT-----TTGGG-CC-S
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC------------ccccccccccc------cccccccccccc-ccCC
Confidence            4799999999999999999999999999875431            22222222111      11222222 443 4899


Q ss_pred             EEeecccccccc
Q psy1913         359 ILVPAAIEKVIR  370 (535)
Q Consensus       359 ILiPaA~~~~It  370 (535)
                      +++-|...+.|.
T Consensus        71 lv~iavpDdaI~   82 (127)
T PF10727_consen   71 LVFIAVPDDAIA   82 (127)
T ss_dssp             EEEE-S-CCHHH
T ss_pred             EEEEEechHHHH
Confidence            999998877765

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.77  E-value=0.53  Score=47.87  Aligned_cols=127  Identities=14%  Similarity=0.174  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++.          .+.  ..+++++.|.|.|.+|+.++..|.+.|++|+. .+            -+.+++.
T Consensus       100 D~~G~~~~l~~----------~~~--~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v-~~------------R~~~~~~  154 (270)
T TIGR00507       100 DGIGLVSDLER----------LIP--LRPNQRVLIIGAGGAARAVALPLLKADCNVII-AN------------RTVSKAE  154 (270)
T ss_pred             CHHHHHHHHHh----------cCC--CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE-Ee------------CCHHHHH
Confidence            57787777652          121  24688999999999999999999999987665 22            3444444


Q ss_pred             HHHHHcCCcccCCCCcccCC-CCccccceEEeecccccccccc---c--ccccc-ceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913         331 TYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---N--ADKVQ-AKIIVEAANGP-LTPAAHAMLLKKN  402 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~---n--a~~i~-AkiIvEgAN~p-~T~eA~~iL~~rG  402 (535)
                      +..++...   +.....++. +....++||+|-|+.-+.-...   .  ...++ -.+|++-.=.| -|+ --+..+++|
T Consensus       155 ~la~~~~~---~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~-ll~~A~~~G  230 (270)
T TIGR00507       155 ELAERFQR---YGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETP-FLAEAKSLG  230 (270)
T ss_pred             HHHHHHhh---cCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCH-HHHHHHHCC
Confidence            44433211   101111222 2222479999999875432211   1  12233 35788887776 464 445567888


Q ss_pred             ceee
Q psy1913         403 VLII  406 (535)
Q Consensus       403 I~vi  406 (535)
                      +.++
T Consensus       231 ~~~v  234 (270)
T TIGR00507       231 TKTI  234 (270)
T ss_pred             Ceee
Confidence            7765

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.12  Score=54.09  Aligned_cols=49  Identities=18%  Similarity=0.148  Sum_probs=42.5

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVa  308 (535)
                      .+.|..|+...++          ..|+  +++|++|+|.|-| .||..+|.+|.++|+.|+.
T Consensus       139 ~PcTp~aii~lL~----------~~~i--~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv  188 (301)
T PRK14194        139 TPCTPSGCLRLLE----------DTCG--DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTV  188 (301)
T ss_pred             CCCcHHHHHHHHH----------HhCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            5889999876666          4565  5899999999996 9999999999999999876

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.75  E-value=0.06  Score=60.18  Aligned_cols=105  Identities=21%  Similarity=0.202  Sum_probs=67.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .|.|+||.|.|||++|+.+|+.|...|++|++        |||..   +.+..    .+.       +.+..+.  +++ 
T Consensus       135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~---~~~~~----~~~-------g~~~~~~l~ell-  191 (525)
T TIGR01327       135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLA--------YDPYI---SPERA----EQL-------GVELVDDLDELL-  191 (525)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC---ChhHH----Hhc-------CCEEcCCHHHHH-
Confidence            58999999999999999999999999999988        44432   11111    111       1222222  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~  404 (535)
                      ..||+++-|..     .+.|+.+....++ -.+++.-|=|++ ..+ ..+.|.+..|.
T Consensus       192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~  249 (525)
T TIGR01327       192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR  249 (525)
T ss_pred             hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence            47888887765     3455555555553 357788888884 333 33567666664

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.74  E-value=0.053  Score=57.99  Aligned_cols=93  Identities=24%  Similarity=0.330  Sum_probs=57.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cc-cCCCCcccCCCCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IK-GYPGTKSAPTDIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~-~~~~a~~i~~ell~  354 (535)
                      ++.+.+|+|.|+|.+|..+++.+...|++|++             .|.+.+.+.+.....+. +. .+.....+. +.+ 
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v-------------~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~-~~l-  228 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTI-------------LDINIDRLRQLDAEFGGRIHTRYSNAYEIE-DAV-  228 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHHhcCceeEeccCCHHHHH-HHH-
Confidence            36778999999999999999999999999777             34566666555444332 10 000000000 122 


Q ss_pred             ccceEEeeccc------ccccccccccccc-ceEEEe
Q psy1913         355 DKVDILVPAAI------EKVIRKSNADKVQ-AKIIVE  384 (535)
Q Consensus       355 ~~~DILiPaA~------~~~It~~na~~i~-AkiIvE  384 (535)
                      .++||+|-|+.      ...|+.+-...++ -.+|+.
T Consensus       229 ~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       229 KRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             ccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence            37899998862      2335666655554 234554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=94.68  E-value=0.44  Score=49.18  Aligned_cols=130  Identities=13%  Similarity=0.083  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|+..+++..          +  .++++++|.|.|.|.+|+.++..|.+.|++=|.|.|+            +.++..
T Consensus       110 D~~G~~~~l~~~----------~--~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR------------~~~ka~  165 (284)
T PRK12549        110 DWSGFAESFRRG----------L--PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV------------DPARAA  165 (284)
T ss_pred             CHHHHHHHHHhh----------c--cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC------------CHHHHH
Confidence            477887777621          1  2367899999999999999999999999854555543            344444


Q ss_pred             HHHHHcCCcccCCCCcccCC-CCc--cccceEEeecccccccccc----cccccc-ceEEEecCCCC-CCHHHHHHHHhC
Q psy1913         331 TYKITKGTIKGYPGTKSAPT-DIM--FDKVDILVPAAIEKVIRKS----NADKVQ-AKIIVEAANGP-LTPAAHAMLLKK  401 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~-ell--~~~~DILiPaA~~~~It~~----na~~i~-AkiIvEgAN~p-~T~eA~~iL~~r  401 (535)
                      +..+..+.  .++....... ++.  -.++||+|-|+.-+.-...    +...++ ..+|.+-.-+| .|+=. +.-+++
T Consensus       166 ~la~~l~~--~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll-~~A~~~  242 (284)
T PRK12549        166 ALADELNA--RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELL-RAARAL  242 (284)
T ss_pred             HHHHHHHh--hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHH-HHHHHC
Confidence            44332210  0111111111 211  1479999999754321111    112232 35788888787 45544 334677


Q ss_pred             Cceeec
Q psy1913         402 NVLIIP  407 (535)
Q Consensus       402 GI~viP  407 (535)
                      |..++.
T Consensus       243 G~~~~~  248 (284)
T PRK12549        243 GCRTLD  248 (284)
T ss_pred             CCeEec
Confidence            876653

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.66  E-value=1.6  Score=47.69  Aligned_cols=203  Identities=10%  Similarity=0.104  Sum_probs=115.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-----C--CCCcccC-C-
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-----Y--PGTKSAP-T-  350 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-----~--~~a~~i~-~-  350 (535)
                      .++|+|+|.|.||..+|..|.+ |..|++             .|+|.+.+..+.+..-.+..     +  .+.-..+ . 
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g-------------~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~   71 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVG-------------FDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEI   71 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEE-------------EeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCH
Confidence            3789999999999999999877 699998             66887777766521110100     0  0011111 1 


Q ss_pred             CCccccceEEeecccccccccccc--------------cccc--ceEEEecCCCCC-CHH-HHHHHHh-CCceeeccccc
Q psy1913         351 DIMFDKVDILVPAAIEKVIRKSNA--------------DKVQ--AKIIVEAANGPL-TPA-AHAMLLK-KNVLIIPDIFA  411 (535)
Q Consensus       351 ell~~~~DILiPaA~~~~It~~na--------------~~i~--AkiIvEgAN~p~-T~e-A~~iL~~-rGI~viPD~la  411 (535)
                      + .-.+||+++-|-.... +.++.              ..++  .-+|.+..-.|- |.+ +..+|.+ .|+.+.-|+..
T Consensus        72 ~-~~~~advvii~Vptp~-~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~  149 (425)
T PRK15182         72 E-KIKECNFYIITVPTPI-NTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYV  149 (425)
T ss_pred             H-HHcCCCEEEEEcCCCC-CCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeE
Confidence            2 2358999998876442 22111              1121  357777877784 443 4456654 47765544433


Q ss_pred             ------cccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHH
Q psy1913         412 ------NAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQ  485 (535)
Q Consensus       412 ------NaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~  485 (535)
                            -.+|....-+.++.   .+--     .-+ +...++++.+++.+..   ...-...+...++.++      ++.
T Consensus       150 ~~~PE~v~~G~a~~~~~~~~---riv~-----G~~-~~~~~~~~~ly~~~~~---~~~~~~~~~~~AE~~K------l~~  211 (425)
T PRK15182        150 GYSPERINPGDKKHRLTNIK---KITS-----GST-AQIAELIDEVYQQIIS---AGTYKAESIKVAEAAK------VIE  211 (425)
T ss_pred             eeCCCcCCCCcccccccCCC---eEEE-----CCC-HHHHHHHHHHHHHHhh---cCcEEecCHHHHHHHH------HHH
Confidence                  34555444433222   1111     212 3334455555554421   0111223345555555      677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Q psy1913         486 SSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC  518 (535)
Q Consensus       486 ~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~  518 (535)
                      .-+-.......+++..+|++.+  +|.++..-.
T Consensus       212 N~~~av~Ia~~NE~a~lae~~G--iD~~~v~~a  242 (425)
T PRK15182        212 NTQRDLNIALVNELAIIFNRLN--IDTEAVLRA  242 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHH
Confidence            7888888888999999999985  787766544

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.66  E-value=0.072  Score=56.06  Aligned_cols=105  Identities=15%  Similarity=0.200  Sum_probs=66.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      +|.|+||.|.|||++|+.+|+.+. -.|.+|++        |++..   +.+.    ....       +.+..+- +++ 
T Consensus       142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~--------~~~~~---~~~~----~~~~-------~~~~~~l~ell-  198 (323)
T PRK15409        142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY--------NARRH---HKEA----EERF-------NARYCDLDTLL-  198 (323)
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE--------ECCCC---chhh----HHhc-------CcEecCHHHHH-
Confidence            589999999999999999999997 78999987        23221   1110    0111       1122222 444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI~  404 (535)
                      ..|||++.+..     .+.|+.+....++ --+++.-|-|++ ..+ ..+.|++.-|.
T Consensus       199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~  256 (323)
T PRK15409        199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH  256 (323)
T ss_pred             HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence            48899888765     3455555555554 368888899995 333 33566655453

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.62  E-value=0.19  Score=52.38  Aligned_cols=74  Identities=16%  Similarity=0.266  Sum_probs=49.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      +.+++|+|.|+|.+|..+++.|...|+..|.|+|            .+.+...+..++.|.     ....++.  +.+ .
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~------------r~~~ra~~la~~~g~-----~~~~~~~~~~~l-~  237 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIAN------------RTYERAEELAKELGG-----NAVPLDELLELL-N  237 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe------------CCHHHHHHHHHHcCC-----eEEeHHHHHHHH-h
Confidence            6899999999999999999999998866555544            455666666665542     0011111  222 4


Q ss_pred             cceEEeeccccccc
Q psy1913         356 KVDILVPAAIEKVI  369 (535)
Q Consensus       356 ~~DILiPaA~~~~I  369 (535)
                      ++||+|-|+.....
T Consensus       238 ~aDvVi~at~~~~~  251 (311)
T cd05213         238 EADVVISATGAPHY  251 (311)
T ss_pred             cCCEEEECCCCCch
Confidence            68999988875443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.62  E-value=0.15  Score=52.92  Aligned_cols=83  Identities=25%  Similarity=0.243  Sum_probs=59.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|..||...++          ..+.  +++|++|+|.| ...||.-++.+|.++||.|.. ++++       .  -|
T Consensus       137 ~~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~-chs~-------T--~~  194 (278)
T PRK14172        137 FLPCTPNSVITLIK----------SLNI--DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTI-CHSK-------T--KN  194 (278)
T ss_pred             CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE-eCCC-------C--CC
Confidence            36889999886666          4565  58999999999 567899999999999998765 3321       1  11


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD  375 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~  375 (535)
                      +.+                        +...+||+|-|+. .+.|+.+...
T Consensus       195 l~~------------------------~~~~ADIvIsAvGkp~~i~~~~ik  221 (278)
T PRK14172        195 LKE------------------------VCKKADILVVAIGRPKFIDEEYVK  221 (278)
T ss_pred             HHH------------------------HHhhCCEEEEcCCCcCccCHHHcC
Confidence            111                        2357899998887 6777766544

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=94.61  E-value=0.084  Score=58.73  Aligned_cols=195  Identities=11%  Similarity=0.054  Sum_probs=107.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc---ccCC--CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK---SAPT--DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~---~i~~--ell~~  355 (535)
                      .+|.++|+|+.|..+|+-|.+.|.+|++             .|.+.+...+..+.....    ++.   ..+.  ++.+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V-------------~NRt~~k~~~l~~~~~~~----Ga~~~~~a~s~~e~v~~   69 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISV-------------YNRTTSKVDETVERAKKE----GNLPLYGFKDPEDFVLS   69 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEE-------------ECCCHHHHHHHHHhhhhc----CCcccccCCCHHHHHhc
Confidence            4799999999999999999999999987             445566665555421000    111   1111  33322


Q ss_pred             --cceEEeecccccccccc----ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         356 --KVDILVPAAIEKVIRKS----NADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       356 --~~DILiPaA~~~~It~~----na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                        .||+++-|-..+....+    -.+.+ .-++|+++.|..  .|.+..+.|.++|+.|+=  .-=+||...     .++
T Consensus        70 l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld--apVSGG~~g-----A~~  142 (493)
T PLN02350         70 IQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG--MGVSGGEEG-----ARN  142 (493)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe--CCCcCCHHH-----hcC
Confidence              58999888653332222    23333 347999999985  567777889999999872  223333321     111


Q ss_pred             cccccccccccccchh---hHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         427 ISHSSLGRMSFGYDKE---ISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYA  503 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a  503 (535)
                      -..+-.|    . +++   +.+.+++.|......  +......-+.-...+      ...|+..++..+..++-+.+.++
T Consensus       143 G~~im~G----G-~~~a~~~v~pvL~~ia~k~~~--~~~v~~vG~~GaG~~------vKlv~N~i~~~~m~~iaEA~~l~  209 (493)
T PLN02350        143 GPSLMPG----G-SFEAYKNIEDILEKVAAQVDD--GPCVTYIGPGGAGNF------VKMVHNGIEYGDMQLISEAYDVL  209 (493)
T ss_pred             CCeEEec----C-CHHHHHHHHHHHHHHhhhcCC--CCcEEEeCCcCHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111    1 221   122223222210000  000000011122222      33799999999999999999999


Q ss_pred             HH-cCCCCCHHH
Q psy1913         504 EK-SDNKLDLRN  514 (535)
Q Consensus       504 ~~-~~~~~~lR~  514 (535)
                      ++ .+  +|...
T Consensus       210 ~~~~G--ld~~~  219 (493)
T PLN02350        210 KSVGG--LSNEE  219 (493)
T ss_pred             HhhCC--CCHHH
Confidence            87 44  56444

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.55  E-value=0.18  Score=52.41  Aligned_cols=51  Identities=16%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      +..++|.+||...++          ..|+  +++|++|+|.|= ..||.-+|.+|..+||.|+.
T Consensus       134 ~~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~atVti  185 (282)
T PRK14169        134 TVVASTPYGIMALLD----------AYDI--DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTI  185 (282)
T ss_pred             CCCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence            346999999876666          4565  589999999995 56899999999999998864

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.53  E-value=0.28  Score=50.26  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=78.7

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe----------EEEEecCCceEeCCCCCCCCHHHHH--HHHHHc
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK----------CLAIVEHDTAIVPDKGTEINYKDLH--TYKITK  336 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak----------VVaVsD~~G~iynp~G~dLDi~~L~--~~~~~~  336 (535)
                      ++..|.  +|+..||+|.|.|..|.++|++|.+.+.+          =+-+.|++|-|++... |++.....  ++.+. 
T Consensus        16 lk~~g~--~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~-~l~~~~~~~~~~~~~-   91 (254)
T cd00762          16 LKVTKK--KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRK-ETCPNEYHLARFANP-   91 (254)
T ss_pred             HHHhCC--ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCC-ccCHHHHHHHHHcCc-
Confidence            345564  48999999999999999999999987654          5678999999998874 45543221  11111 


Q ss_pred             CCcccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCCC
Q psy1913         337 GTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANGP  389 (535)
Q Consensus       337 g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~p  389 (535)
                              ......  +.+ ..+.||||=++. ++.+|++-+..+.    =.||---+|--
T Consensus        92 --------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt  144 (254)
T cd00762          92 --------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPT  144 (254)
T ss_pred             --------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcC
Confidence                    111122  333 469999999988 9999999888884    47888888853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=94.50  E-value=0.22  Score=51.59  Aligned_cols=109  Identities=13%  Similarity=0.179  Sum_probs=78.6

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC----CC------eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG----RA------KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT  338 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~----Ga------kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~  338 (535)
                      ++..|.  +|+..||+|.|.|..|.++|++|.+.    |.      +=+-+.|++|-|++... ||+.. ...+.+....
T Consensus        16 lk~~g~--~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~-~l~~~-~~~~a~~~~~   91 (279)
T cd05312          16 LRITGK--PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRK-DLTPF-KKPFARKDEE   91 (279)
T ss_pred             HHHhCC--ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCC-cchHH-HHHHHhhcCc
Confidence            345564  48899999999999999999999875    87      56688999999998775 34322 2233332210


Q ss_pred             cccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913         339 IKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG  388 (535)
Q Consensus       339 v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~  388 (535)
                             .....  +.+ .+++||||=++. ++.+|++-+..+.    =.||---+|-
T Consensus        92 -------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  142 (279)
T cd05312          92 -------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP  142 (279)
T ss_pred             -------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence                   01112  333 469999999995 7999999988884    4788888885

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.45  E-value=0.081  Score=52.77  Aligned_cols=111  Identities=23%  Similarity=0.317  Sum_probs=67.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH-cCC--cccCCCCcccCCCCc----
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT-KGT--IKGYPGTKSAPTDIM----  353 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~-~g~--v~~~~~a~~i~~ell----  353 (535)
                      ++|+|.|.|.||+.+|+.|.+.|..|++|             |-|.+.+.++... ...  +.+  .++  +.+.|    
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-------------d~d~~~~~~~~~~~~~~~~v~g--d~t--~~~~L~~ag   63 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-------------DRDEERVEEFLADELDTHVVIG--DAT--DEDVLEEAG   63 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEE-------------EcCHHHHHHHhhhhcceEEEEe--cCC--CHHHHHhcC
Confidence            58999999999999999999999999993             4666777664442 211  111  011  11222    


Q ss_pred             cccceEEeeccccccccc---ccccc-ccceEEEecCCCCCCHHHHHHHHhCC--ceeeccccc
Q psy1913         354 FDKVDILVPAAIEKVIRK---SNADK-VQAKIIVEAANGPLTPAAHAMLLKKN--VLIIPDIFA  411 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~---~na~~-i~AkiIvEgAN~p~T~eA~~iL~~rG--I~viPD~la  411 (535)
                      -.++|++|-+...+.++.   ..|.+ +..+-|+==++   +++..++|.+-|  ..+-|...+
T Consensus        64 i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~  124 (225)
T COG0569          64 IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA  124 (225)
T ss_pred             CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence            368999999887665543   12211 22222222222   456778888888  456666543

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=94.45  E-value=0.85  Score=51.47  Aligned_cols=180  Identities=14%  Similarity=0.173  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchH
Q psy1913         173 NNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATG  252 (535)
Q Consensus       173 s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg  252 (535)
                      +..|...+...|+.++..+  . |..-|==.|++..-  ---+.+.|+...        -++-.          --.-||
T Consensus       221 ~g~eY~~f~defv~av~~~--~-P~~~Iq~EDf~~~n--af~iL~kyr~~i--------~~FnD----------DiQGTa  277 (559)
T PTZ00317        221 DDDEYYELLDEFMEAVSSR--W-PNAVVQFEDFSNNH--CFDLLERYQNKY--------RCFND----------DIQGTG  277 (559)
T ss_pred             ChhhHHHHHHHHHHHHHHh--C-CCeEEehhhcCCcc--HHHHHHHhccCC--------CEecc----------cchhHH
Confidence            6778888999999988863  3 67667778887643  234567775421        12211          123455


Q ss_pred             HHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCCC
Q psy1913         253 RGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKGT  322 (535)
Q Consensus       253 ~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G~  322 (535)
                      -=+..++.+++      +..|.  .|+..||++.|.|..|..+|++|.+    .|.      +=+-+.|++|-|+...+.
T Consensus       278 aV~lAgll~Al------r~~g~--~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~  349 (559)
T PTZ00317        278 AVIAAGFLNAL------KLSGV--PPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGD  349 (559)
T ss_pred             HHHHHHHHHHH------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCc
Confidence            44455555444      34564  4899999999999999999999974    687      566788999999988752


Q ss_pred             CCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913         323 EINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG  388 (535)
Q Consensus       323 dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~  388 (535)
                      +|+.... .+.+....   -++.. ...  +.+ ..+.||||=++. ++.+|++-+..+.    -.||---+|-
T Consensus       350 ~l~~~k~-~fa~~~~~---~~~~~-~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP  418 (559)
T PTZ00317        350 KLAKHKV-PFARTDIS---AEDSS-LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP  418 (559)
T ss_pred             cccHHHH-HHhccccc---ccccc-CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            2433222 22221100   00000 122  333 578899999996 7999999888875    3788888884

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.42  E-value=0.057  Score=60.28  Aligned_cols=116  Identities=19%  Similarity=0.192  Sum_probs=70.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc--cCCC--------Ccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK--GYPG--------TKS  347 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~--~~~~--------a~~  347 (535)
                      ..+.+|+|.|.|.+|..++..+...|++|++             .|.+.+.+...++-.....  +...        ++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a-------------~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~  229 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRA-------------FDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKV  229 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHcCCeEEEeccccccccccchhhh
Confidence            4589999999999999999999999999888             6677777766554222211  1100        011


Q ss_pred             cCCC-------Ccc---ccceEEeecccc-c-----ccccccccccc--ceEEEecC----CCCCCHHHHHHHHhCCcee
Q psy1913         348 APTD-------IMF---DKVDILVPAAIE-K-----VIRKSNADKVQ--AKIIVEAA----NGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       348 i~~e-------ll~---~~~DILiPaA~~-~-----~It~~na~~i~--AkiIvEgA----N~p~T~eA~~iL~~rGI~v  405 (535)
                      .+.+       ++.   ..+||+|-|+.- +     .|+.+-.+.++  ..+|-=|+    |-++|.....++..+||.+
T Consensus       230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti  309 (509)
T PRK09424        230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTI  309 (509)
T ss_pred             cchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEE
Confidence            1111       121   369999999973 2     44666666664  23333232    3234433344444578766


Q ss_pred             e
Q psy1913         406 I  406 (535)
Q Consensus       406 i  406 (535)
                      +
T Consensus       310 ~  310 (509)
T PRK09424        310 I  310 (509)
T ss_pred             E
Confidence            4

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.41  E-value=0.073  Score=52.30  Aligned_cols=82  Identities=17%  Similarity=0.158  Sum_probs=52.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      +++|++|.|.|.|.||...++.|.+.|++|+.|+.           ++. ++|.+.... +.+.-.  ...+..+-+ .+
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~-----------~~~-~~l~~l~~~-~~i~~~--~~~~~~~~l-~~   70 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP-----------ELT-ENLVKLVEE-GKIRWK--QKEFEPSDI-VD   70 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC-----------CCC-HHHHHHHhC-CCEEEE--ecCCChhhc-CC
Confidence            47899999999999999999999999999988752           133 234444332 222110  001111111 47


Q ss_pred             ceEEeecccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNA  374 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na  374 (535)
                      +|++|-|+-...+|..-+
T Consensus        71 adlViaaT~d~elN~~i~   88 (202)
T PRK06718         71 AFLVIAATNDPRVNEQVK   88 (202)
T ss_pred             ceEEEEcCCCHHHHHHHH
Confidence            899998877666665443

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.38  E-value=0.24  Score=51.36  Aligned_cols=53  Identities=25%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEecC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      -.+.|..||...++          ..++  +++|++|+|.|-+ .||.-+|.+|.++||.|. ++.+
T Consensus       136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs  189 (281)
T PRK14183        136 FVPCTPLGVMELLE----------EYEI--DVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHI  189 (281)
T ss_pred             CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence            46889999876655          4565  5899999999987 899999999999999886 5544

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.38  E-value=0.2  Score=53.01  Aligned_cols=97  Identities=25%  Similarity=0.313  Sum_probs=60.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCH-HHHHHHHHHcCCccc----------CCCCc-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINY-KDLHTYKITKGTIKG----------YPGTK-  346 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi-~~L~~~~~~~g~v~~----------~~~a~-  346 (535)
                      .+|+|=|||-.|+.+++.+.+.+  ..||||.|.         +|.|. ..|+++-.-+|.+.+          |.+.. 
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I   72 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI   72 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence            48999999999999999999875  899999875         11221 222222211332221          11111 


Q ss_pred             -c---cCC---CCccccceEEeecccccccccccccc-cc---ceEEEecCC
Q psy1913         347 -S---APT---DIMFDKVDILVPAAIEKVIRKSNADK-VQ---AKIIVEAAN  387 (535)
Q Consensus       347 -~---i~~---ell~~~~DILiPaA~~~~It~~na~~-i~---AkiIvEgAN  387 (535)
                       .   .++   ++-++.+||.+.|+.... +.+|+++ +.   ||-|.-+|=
T Consensus        73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isap  123 (335)
T COG0057          73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISAP  123 (335)
T ss_pred             EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcCC
Confidence             0   111   223567899999998776 8899885 42   466665553

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.37  E-value=0.74  Score=47.12  Aligned_cols=127  Identities=16%  Similarity=0.176  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      .+.|...+++.         .++.  ++++++|.|.|.|.+|+.++..|.+.| .+|+. .+            -+.+.+
T Consensus       105 D~~G~~~~l~~---------~~~~--~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v-~~------------R~~~~a  160 (278)
T PRK00258        105 DGIGFVRALEE---------RLGV--DLKGKRILILGAGGAARAVILPLLDLGVAEITI-VN------------RTVERA  160 (278)
T ss_pred             cHHHHHHHHHh---------ccCC--CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE-Ee------------CCHHHH
Confidence            56676666652         1232  468999999999999999999999999 45554 33            334555


Q ss_pred             HHHHHHcCCcccCCCCcc-cCC-CCccccceEEeeccccccccc-----ccccccc-ceEEEecCCCC-CCHHHHHHHHh
Q psy1913         330 HTYKITKGTIKGYPGTKS-APT-DIMFDKVDILVPAAIEKVIRK-----SNADKVQ-AKIIVEAANGP-LTPAAHAMLLK  400 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~-i~~-ell~~~~DILiPaA~~~~It~-----~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~  400 (535)
                      .+..++.+...   .... .+. +.+ .++||+|-|+..+.-..     -....++ -.+|++..=+| -|+=. +.-++
T Consensus       161 ~~l~~~~~~~~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll-~~A~~  235 (278)
T PRK00258        161 EELAKLFGALG---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFL-AWAKA  235 (278)
T ss_pred             HHHHHHhhhcc---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHH-HHHHH
Confidence            55444332110   0111 111 222 47899999987655321     1122332 46788888777 45543 33477


Q ss_pred             CCceee
Q psy1913         401 KNVLII  406 (535)
Q Consensus       401 rGI~vi  406 (535)
                      +|+.++
T Consensus       236 ~G~~~~  241 (278)
T PRK00258        236 QGARTI  241 (278)
T ss_pred             CcCeec
Confidence            787665

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.30  E-value=0.2  Score=52.05  Aligned_cols=50  Identities=20%  Similarity=0.143  Sum_probs=41.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+||..-++          ..++  +++|++|+|.| ...||.-+|.+|.++||.|..
T Consensus       138 ~~PcTp~avi~ll~----------~y~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~  188 (284)
T PRK14177        138 YLPCTPYGMVLLLK----------EYGI--DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTL  188 (284)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            46889999887665          3565  58999999999 567899999999999998775

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.27  E-value=0.17  Score=54.92  Aligned_cols=32  Identities=16%  Similarity=0.215  Sum_probs=30.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .|.|+||.|.|||++|+.+|+.+...|++|++
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~  179 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF  179 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            58999999999999999999999999999998

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.24  E-value=0.31  Score=51.10  Aligned_cols=114  Identities=21%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHH-HHHHHHHcCCcccCCCCcccCCCCcc--
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKD-LHTYKITKGTIKGYPGTKSAPTDIMF--  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~-L~~~~~~~g~v~~~~~a~~i~~ell~--  354 (535)
                      +..+|+|.|.|++|...+..+.+ .+..+++|+|            +|.+. .++..++.|--..|.+.+    +++.  
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvd------------id~es~gla~A~~~Gi~~~~~~ie----~LL~~~   66 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVG------------IDPESDGLARARRLGVATSAEGID----GLLAMP   66 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEe------------CChhhHHHHHHHHcCCCcccCCHH----HHHhCc
Confidence            45799999999999986666664 5789999986            34331 223344443111111111    3453  


Q ss_pred             --ccceEEeeccccccccccccccc---cceEEEec--CCCC-CCHH--HHHHHHhC--Cceeeccc
Q psy1913         355 --DKVDILVPAAIEKVIRKSNADKV---QAKIIVEA--ANGP-LTPA--AHAMLLKK--NVLIIPDI  409 (535)
Q Consensus       355 --~~~DILiPaA~~~~It~~na~~i---~AkiIvEg--AN~p-~T~e--A~~iL~~r--GI~viPD~  409 (535)
                        .++|+.+-|+. +..+.+++...   .+.+|.+-  +++| +-|+  .++.+..+  ++...|.-
T Consensus        67 ~~~dIDiVf~AT~-a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~  132 (302)
T PRK08300         67 EFDDIDIVFDATS-AGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ  132 (302)
T ss_pred             CCCCCCEEEECCC-HHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence              47999998884 45777777766   34566553  4666 3333  33444434  55544443

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.22  E-value=0.22  Score=51.75  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCH
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi  326 (535)
                      .+.|..||..-++          ..|.  +++|++|+|.|= ..||.-+|.+|.++||.|+. +.++        + -| 
T Consensus       137 ~PcTp~avi~lL~----------~y~i--~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~-chs~--------T-~n-  193 (282)
T PRK14166        137 LPCTPLGVMKLLK----------AYEI--DLEGKDAVIIGASNIVGRPMATMLLNAGATVSV-CHIK--------T-KD-  193 (282)
T ss_pred             cCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE-eCCC--------C-CC-
Confidence            5889999887666          3565  489999999995 66899999999999998875 3221        1 11 


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD  375 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~  375 (535)
                        |.                     -+...+||+|-|+. .+.|+.+.+.
T Consensus       194 --l~---------------------~~~~~ADIvIsAvGkp~~i~~~~vk  220 (282)
T PRK14166        194 --LS---------------------LYTRQADLIIVAAGCVNLLRSDMVK  220 (282)
T ss_pred             --HH---------------------HHHhhCCEEEEcCCCcCccCHHHcC
Confidence              11                     12357899999987 6777766544

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.17  E-value=0.15  Score=53.06  Aligned_cols=50  Identities=22%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||...++          ..|.  +++|++|+|.|- |.||.-+|.+|.+.|+.|+.
T Consensus       137 ~~PcTp~avi~lL~----------~~~i--~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv  187 (284)
T PRK14179        137 MIPCTPAGIMEMFR----------EYNV--ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTL  187 (284)
T ss_pred             CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEE
Confidence            46899999876665          4565  589999999999 99999999999999999876

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=94.11  E-value=0.13  Score=54.62  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             EEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC--CcccCCC-------Cc-ccC-C
Q psy1913         283 YIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG--TIKGYPG-------TK-SAP-T  350 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g--~v~~~~~-------a~-~i~-~  350 (535)
                      |+|.|||.+|+..++.+.+ .+.+||||+|            .+++....+....|  +...++.       .. .+. .
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD------------~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~   68 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK------------TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGT   68 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEec------------CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCC
Confidence            6899999999999999875 5789999987            33333323332222  2111211       10 111 1


Q ss_pred             --CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913         351 --DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA  386 (535)
Q Consensus       351 --ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA  386 (535)
                        +++ .+||++++|+ +...+.+|+..+   ++|.|.-+|
T Consensus        69 ~eeLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~  107 (333)
T TIGR01546        69 LEDLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG  107 (333)
T ss_pred             HHHHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence              455 5799999997 566677777665   455555443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.07  E-value=0.18  Score=52.59  Aligned_cols=50  Identities=16%  Similarity=0.070  Sum_probs=43.3

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+||...++          ..+.  +++|++|+|.| .|.||..+|..|.+.|+.|+.
T Consensus       137 ~~PcTp~ai~~ll~----------~~~i--~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv  187 (296)
T PRK14188        137 LVPCTPLGCMMLLR----------RVHG--DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTI  187 (296)
T ss_pred             CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEE
Confidence            46899999887666          3455  58999999999 999999999999999999886

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.98  E-value=0.12  Score=57.86  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=63.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .|.|+||.|.|||++|+.+|+.|...|++|++        ||+..   +.+.    ....       +.+..+- +++ .
T Consensus       137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~--------~d~~~---~~~~----~~~~-------g~~~~~l~ell-~  193 (526)
T PRK13581        137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA--------YDPYI---SPER----AAQL-------GVELVSLDELL-A  193 (526)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEE--------ECCCC---ChhH----HHhc-------CCEEEcHHHHH-h
Confidence            47899999999999999999999999999988        33322   1111    1111       1222222 444 3


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI  403 (535)
                      .||+++-|..-     +.|+.+....++ -.+++.-|-+++ ..+| .+.|.+.-|
T Consensus       194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i  249 (526)
T PRK13581        194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV  249 (526)
T ss_pred             hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence            67888777653     345544444443 356777777773 3333 355655544

>KOG1370|consensus

Probab=93.86  E-value=0.088  Score=55.15  Aligned_cols=81  Identities=23%  Similarity=0.360  Sum_probs=60.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV  357 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~  357 (535)
                      +.||-++|-|+|.||...|..|.-.|++|+.             +++|+=..++..-+     +|   +.++-+=...++
T Consensus       212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Viv-------------TEiDPI~ALQAaMe-----G~---~V~tm~ea~~e~  270 (434)
T KOG1370|consen  212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIV-------------TEIDPICALQAAME-----GY---EVTTLEEAIREV  270 (434)
T ss_pred             ecccEEEEeccCccchhHHHHHhhcCcEEEE-------------eccCchHHHHHHhh-----cc---EeeeHHHhhhcC
Confidence            5789999999999999999999999999998             88986544444332     12   221111123578


Q ss_pred             eEEeeccc-cccccccccccccc
Q psy1913         358 DILVPAAI-EKVIRKSNADKVQA  379 (535)
Q Consensus       358 DILiPaA~-~~~It~~na~~i~A  379 (535)
                      ||||-++. -++|+.+.-++++-
T Consensus       271 difVTtTGc~dii~~~H~~~mk~  293 (434)
T KOG1370|consen  271 DIFVTTTGCKDIITGEHFDQMKN  293 (434)
T ss_pred             CEEEEccCCcchhhHHHHHhCcC
Confidence            99999988 78999888877764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=93.83  E-value=0.14  Score=55.64  Aligned_cols=100  Identities=14%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.+++|.|.|.|.+|..+++.|...|+.-|.|++            .+.+.+.+..++.|.     ....++.  +.+ 
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~------------r~~~ra~~la~~~g~-----~~~~~~~~~~~l-  240 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVAN------------RTLERAEELAEEFGG-----EAIPLDELPEAL-  240 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEe------------CCHHHHHHHHHHcCC-----cEeeHHHHHHHh-
Confidence            36899999999999999999999999984333333            455666555555431     0111111  222 


Q ss_pred             ccceEEeeccc--cccccccccccc------cceEEEecCCCC-CCHHH
Q psy1913         355 DKVDILVPAAI--EKVIRKSNADKV------QAKIIVEAANGP-LTPAA  394 (535)
Q Consensus       355 ~~~DILiPaA~--~~~It~~na~~i------~AkiIvEgAN~p-~T~eA  394 (535)
                      .++||+|-|+.  ...|+.+.....      +-.+|+.-|+.. +.|+.
T Consensus       241 ~~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v  289 (423)
T PRK00045        241 AEADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPEV  289 (423)
T ss_pred             ccCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcccc
Confidence            47899999975  456776665443      246899999755 55554

>PLN02712 arogenate dehydrogenase

Probab=93.78  E-value=0.099  Score=60.22  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++++++|+|+|+|++|+.+|+.|.+.|.+|+++.             -+.. . +...+.|       ....+.  ++..
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~d-------------r~~~-~-~~a~~~G-------v~~~~~~~el~~  423 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYS-------------RSDY-S-DEAQKLG-------VSYFSDADDLCE  423 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEE-------------CChH-H-HHHHHcC-------CeEeCCHHHHHh
Confidence            5688999999999999999999999999988632             2211 1 1122232       122222  3444


Q ss_pred             ccceEEeeccccc----ccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceee
Q psy1913         355 DKVDILVPAAIEK----VIRKSNADKVQ-AKIIVEAANGPL-TPAAHAMLLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~----~It~~na~~i~-AkiIvEgAN~p~-T~eA~~iL~~rGI~vi  406 (535)
                      ..||++|-|....    ++..-....++ -.+|+.-+..-. .-++-+.+...|+.|+
T Consensus       424 ~~aDvVILavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v  481 (667)
T PLN02712        424 EHPEVILLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL  481 (667)
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceE
Confidence            4689999996533    22221111232 357777766532 1222222334566566

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.72  E-value=0.088  Score=49.74  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+|++|.|.|.|.||...++.|.+.|+.|+.|+
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4799999999999999999999999999998864

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.69  E-value=0.29  Score=51.20  Aligned_cols=49  Identities=22%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.|.+||...++          ..|+  +++|++|+|.|= ..||.-+|.+|.++||.|..
T Consensus       138 ~PcTp~aii~lL~----------~~~i--~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv  187 (297)
T PRK14186        138 RSCTPAGVMRLLR----------SQQI--DIAGKKAVVVGRSILVGKPLALMLLAANATVTI  187 (297)
T ss_pred             CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence            5889999876666          4566  589999999995 66899999999999998865

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.69  E-value=0.24  Score=51.50  Aligned_cols=110  Identities=15%  Similarity=0.051  Sum_probs=65.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC------CcccCC--C
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG------TKSAPT--D  351 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~------a~~i~~--e  351 (535)
                      .++|+|.|.|++|..+|..|.+.|..|+.+        +     -+.+.+............+++      ....+.  +
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~--------~-----r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e   70 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLW--------A-----RRPEFAAALAAERENREYLPGVALPAELYPTADPEE   70 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEE--------e-----CCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH
Confidence            358999999999999999999999988762        2     333444333332211111112      111222  2


Q ss_pred             CccccceEEeecccccccccccccccc-ceEEEecCCCC--C---CHHHHHHHHh---CCce
Q psy1913         352 IMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--L---TPAAHAMLLK---KNVL  404 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~---T~eA~~iL~~---rGI~  404 (535)
                      .+ .+||+++-|.....+ .+-.+.++ -.+|+.-+||-  .   .....+++.+   +++.
T Consensus        71 ~~-~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~  130 (328)
T PRK14618         71 AL-AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA  130 (328)
T ss_pred             HH-cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence            22 489999999887654 33444453 24777788852  1   3344556655   6653

>PRK08223 hypothetical protein; Validated

Probab=93.62  E-value=0.051  Score=56.49  Aligned_cols=118  Identities=16%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      |+..+|+|.|.|-+|..+|..|+..|..=+.+.|.+       =  +++..|-+..- ....+ +-+.++.....+.+..
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D-------~--Ve~SNLnRQ~l~~~~di-G~~Kve~a~~~l~~iN   94 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD-------V--FELRNFNRQAGAMMSTL-GRPKAEVLAEMVRDIN   94 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC-------C--cchhccccccCcChhHC-CCcHHHHHHHHHHHHC
Confidence            467899999999999999999999998777776653       2  44444432110 00001 1111111111122222


Q ss_pred             ceEEeeccccccccccccccc--cceEEEecCCCC---CCHHHHHHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGP---LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p---~T~eA~~iL~~rGI~vi  406 (535)
                      .++=|-+ ...-++++|+..+  .+-+|+++..++   +.....+.-.+.||.++
T Consensus        95 P~v~V~~-~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V  148 (287)
T PRK08223         95 PELEIRA-FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPAL  148 (287)
T ss_pred             CCCEEEE-EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEE
Confidence            2222221 3345567777665  467888888765   22334455677787664

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.62  E-value=1.1  Score=48.38  Aligned_cols=28  Identities=21%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.||..+|..|.+.|..|++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~   28 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTG   28 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEE
Confidence            3799999999999999999999999988

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07680 late competence protein ComER; Validated

Probab=93.59  E-value=0.14  Score=51.99  Aligned_cols=107  Identities=17%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             EEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      +|.|.|+|++|..+++.|.+.|.    .|+. .|            -+.+.+....++.      ++.....+  +++ .
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v-~~------------r~~~~~~~~~~~~------~g~~~~~~~~~~~-~   61 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTI-TN------------RTPAKAYHIKERY------PGIHVAKTIEEVI-S   61 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEE-EC------------CCHHHHHHHHHHc------CCeEEECCHHHHH-H
Confidence            68999999999999999999884    3433 32            4445554444332      12222222  333 5


Q ss_pred             cceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913         356 KVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~viPD  408 (535)
                      +||+++-|.....+.+   +-++.++ -++|+.-+|+-......+.+..+.+.++|-
T Consensus        62 ~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~  118 (273)
T PRK07680         62 QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPS  118 (273)
T ss_pred             hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCC
Confidence            8999999986554322   1223332 368888887654455556665566778885

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.57  E-value=0.18  Score=51.65  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC----CC------eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG----RA------KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT  338 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~----Ga------kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~  338 (535)
                      ++..|.  +|+..||+|.|.|..|-.+|++|.+.    |.      +=+-+.|++|-|++.. .||+.... .+.+....
T Consensus        16 l~~~g~--~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~-~~a~~~~~   91 (255)
T PF03949_consen   16 LRVTGK--KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKK-PFARKTNP   91 (255)
T ss_dssp             HHHHTS---GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHH-HHHBSSST
T ss_pred             HHHhCC--CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhh-hhhccCcc
Confidence            445664  48999999999999999999999886    98      6788899999999887 34543221 22222111


Q ss_pred             cccCCCCcccCC-CC-ccccceEEeecc-ccccccccccccccc----eEEEecCCC
Q psy1913         339 IKGYPGTKSAPT-DI-MFDKVDILVPAA-IEKVIRKSNADKVQA----KIIVEAANG  388 (535)
Q Consensus       339 v~~~~~a~~i~~-el-l~~~~DILiPaA-~~~~It~~na~~i~A----kiIvEgAN~  388 (535)
                      .     ....+- +. -..+.||||=++ .++.+|++-+..+..    .||---+|-
T Consensus        92 ~-----~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP  143 (255)
T PF03949_consen   92 E-----KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP  143 (255)
T ss_dssp             T-----T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred             c-----ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence            1     001111 32 256779999999 799999999998853    788888885

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=93.51  E-value=1.4  Score=45.82  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -|.|+..+++.          .+.+.+++|++|+|.|.|-.++.++..|++.|++=|.|..            =+.+...
T Consensus       107 D~~G~~~~L~~----------~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N------------Rt~~ra~  164 (283)
T COG0169         107 DGIGFLRALKE----------FGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVN------------RTRERAE  164 (283)
T ss_pred             CHHHHHHHHHh----------cCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe------------CCHHHHH
Confidence            36787777762          2333356799999999999999999999999974333333            2344444


Q ss_pred             HHHHHcCCcccCCCCcccCCCCccc-cceEEeecccccccccc---c--cccc-cceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913         331 TYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKS---N--ADKV-QAKIIVEAANGP-LTPAAHAMLLKKN  402 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~ell~~-~~DILiPaA~~~~It~~---n--a~~i-~AkiIvEgAN~p-~T~eA~~iL~~rG  402 (535)
                      ++.+..+....+-....+. ++-.. +.||+|-|+.-+.-..+   .  ...+ +..+|.+-.=+| -||=.+. -+++|
T Consensus       165 ~La~~~~~~~~~~~~~~~~-~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~-A~~~G  242 (283)
T COG0169         165 ELADLFGELGAAVEAAALA-DLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLRE-ARAQG  242 (283)
T ss_pred             HHHHHhhhccccccccccc-ccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHH-HHHcC
Confidence            4444333211110111111 12222 69999999875544432   1  2223 467888999888 5776544 47778


Q ss_pred             ceee
Q psy1913         403 VLII  406 (535)
Q Consensus       403 I~vi  406 (535)
                      ..++
T Consensus       243 ~~~i  246 (283)
T COG0169         243 AKTI  246 (283)
T ss_pred             CeEE
Confidence            6643

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.48  E-value=0.18  Score=49.42  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|.|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            567899999999999999999999998666666654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.41  E-value=0.3  Score=53.21  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC----------CCeEEEEecCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG----------RAKCLAIVEHD  313 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~----------GakVVaVsD~~  313 (535)
                      ..+|+|.|||+||+.+++.|.+.          +.+|++|+|++
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~   46 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD   46 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCC
Confidence            36899999999999999988653          46899999875

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=93.38  E-value=0.24  Score=52.25  Aligned_cols=104  Identities=20%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+|+.|.|+|.+|+.+|+.++-.|++|+.        |++..  . . +..   ++ .      +++.++. +++ .
T Consensus       143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y--------~~~~~--~-~-~~~---~~-~------~~~y~~l~ell-~  199 (324)
T COG1052         143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLY--------YDRSP--N-P-EAE---KE-L------GARYVDLDELL-A  199 (324)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEE--------ECCCC--C-h-HHH---hh-c------CceeccHHHHH-H
Confidence            58999999999999999999999989999987        66665  2 1 111   11 1      1233333 444 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI  403 (535)
                      .+||++-...     .+.|+.+-..+++ --+++.-|=|++ . ....+.|++.-|
T Consensus       200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i  255 (324)
T COG1052         200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKI  255 (324)
T ss_pred             hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence            7898887765     3344444444454 378888899985 3 334466776654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.36  E-value=1.3  Score=45.74  Aligned_cols=130  Identities=14%  Similarity=0.063  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++.          .+...++++++|.|.|.|.+|+.++..|.+.|++-|.|.+++            .+...
T Consensus       106 D~~G~~~~l~~----------~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt------------~~ka~  163 (282)
T TIGR01809       106 DWDGIAGALAN----------IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN------------PDKLS  163 (282)
T ss_pred             CHHHHHHHHHh----------hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC------------HHHHH
Confidence            46787777761          231113689999999999999999999999998766665542            33344


Q ss_pred             HHHHHcCCcccCCCCcccCC--CC--ccccceEEeeccccc-cccccccc---------cc-cceEEEecCCCC-CCHHH
Q psy1913         331 TYKITKGTIKGYPGTKSAPT--DI--MFDKVDILVPAAIEK-VIRKSNAD---------KV-QAKIIVEAANGP-LTPAA  394 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~--el--l~~~~DILiPaA~~~-~It~~na~---------~i-~AkiIvEgAN~p-~T~eA  394 (535)
                      +..++.+...   ....+..  ++  .-.++||+|-|+.-+ .++.+...         ++ ...+|.+..-+| .|+=.
T Consensus       164 ~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll  240 (282)
T TIGR01809       164 RLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLV  240 (282)
T ss_pred             HHHHHhhhcC---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHH
Confidence            4433322110   0111111  11  114789999997733 33333221         11 235778888777 46544


Q ss_pred             HHHHHhCCceee
Q psy1913         395 HAMLLKKNVLII  406 (535)
Q Consensus       395 ~~iL~~rGI~vi  406 (535)
                      .. -+++|..++
T Consensus       241 ~~-A~~~G~~~~  251 (282)
T TIGR01809       241 AI-VSAAGWRVI  251 (282)
T ss_pred             HH-HHHCCCEEE
Confidence            33 356776554

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.32  E-value=0.21  Score=49.71  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=56.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      +++|++|+|.|.|.||..=+++|+..|++|+.||+.           + .+++..+.+..+ +.-+.  ..+..+.+ .+
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~-----------~-~~el~~~~~~~~-i~~~~--~~~~~~~~-~~   72 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE-----------F-EPELKALIEEGK-IKWIE--REFDAEDL-DD   72 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC-----------c-cHHHHHHHHhcC-cchhh--cccChhhh-cC
Confidence            478999999999999999999999999999998843           5 577777766543 22111  11222112 23


Q ss_pred             ceEEeecccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNA  374 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na  374 (535)
                      +++.|.|+-...++..-+
T Consensus        73 ~~lviaAt~d~~ln~~i~   90 (210)
T COG1648          73 AFLVIAATDDEELNERIA   90 (210)
T ss_pred             ceEEEEeCCCHHHHHHHH
Confidence            888888776656665433

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.32  E-value=0.42  Score=50.01  Aligned_cols=82  Identities=23%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEEEecCCceEeCCCCC
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLAIVEHDTAIVPDKGT  322 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVaVsD~~G~iynp~G~  322 (535)
                      .+.|..||...++          ..++  +++|++|+|.|= ..||+-+|.+|.++    +|.|.. +.++        +
T Consensus       137 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtv-chs~--------T  195 (297)
T PRK14167        137 KPCTPHGIQKLLA----------AAGV--DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTV-CHSR--------T  195 (297)
T ss_pred             CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEE-eCCC--------C
Confidence            5889999876666          4566  489999999995 66899999999987    776654 4332        1


Q ss_pred             CCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913         323 EINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD  375 (535)
Q Consensus       323 dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~  375 (535)
                       -|   |                     +-+...+||+|-|+. .+.|+.+.+.
T Consensus       196 -~~---l---------------------~~~~~~ADIvIsAvGkp~~i~~~~ik  224 (297)
T PRK14167        196 -DD---L---------------------AAKTRRADIVVAAAGVPELIDGSMLS  224 (297)
T ss_pred             -CC---H---------------------HHHHhhCCEEEEccCCcCccCHHHcC
Confidence             11   1                     113357899999887 7777765544

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.32  E-value=0.57  Score=48.80  Aligned_cols=50  Identities=28%  Similarity=0.242  Sum_probs=41.1

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHH----CCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRR----GRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e----~GakVVa  308 (535)
                      -.+.|..||...++          ..|+  +++|++|+|.|= ..||.-++.+|.+    ++|.|..
T Consensus       136 ~~PcTp~av~~lL~----------~~~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~  190 (286)
T PRK14184        136 FRPCTPAGVMTLLE----------RYGL--SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTV  190 (286)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEE
Confidence            35889999876666          4566  479999999994 6789999999998    7888876

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.29  E-value=0.66  Score=48.27  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|..||...++          ..|.  +++|++|+|.|- ..||.-+|.+|.++||.|+. +.+.       -  -|
T Consensus       136 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVti-chs~-------T--~~  193 (284)
T PRK14170        136 FVPCTPAGIIELIK----------STGT--QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTI-AHSR-------T--KD  193 (284)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE-eCCC-------C--CC
Confidence            36899999876665          4565  589999999995 56899999999999998875 2221       1  11


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-ccccccccccc
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADK  376 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~  376 (535)
                      +   .+                     +...+||+|-|+. .+.|+.+....
T Consensus       194 l---~~---------------------~~~~ADIvI~AvG~~~~i~~~~vk~  221 (284)
T PRK14170        194 L---PQ---------------------VAKEADILVVATGLAKFVKKDYIKP  221 (284)
T ss_pred             H---HH---------------------HHhhCCEEEEecCCcCccCHHHcCC
Confidence            1   11                     2347799999887 67777665543

>PRK12862 malic enzyme; Reviewed

Probab=93.24  E-value=0.6  Score=54.71  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=86.7

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi  326 (535)
                      .-||-=+..++.+++      +..|.  +++..||+|.|.|..|..+|++|...|.+  =+-+.|++|.|+.....+++.
T Consensus       170 ~GTa~v~la~l~~a~------~~~~~--~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~  241 (763)
T PRK12862        170 HGTAIIVAAALLNGL------KLVGK--DIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDP  241 (763)
T ss_pred             ccHHHHHHHHHHHHH------HHhCC--ChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccH
Confidence            345554555555443      45664  48999999999999999999999999983  457899999999876311554


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCC--CCccccceEEeecccccccccccccccc-ceEEEecCCCC--CCHH
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGP--LTPA  393 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p--~T~e  393 (535)
                      ... .+.+.+.          ...  +.+.. +||||=++.++.+|++-+..+. -.||---||--  +|||
T Consensus       242 ~~~-~~a~~~~----------~~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~  301 (763)
T PRK12862        242 WKA-RYAQKTD----------ARTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPE  301 (763)
T ss_pred             HHH-HHhhhcc----------cCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHH
Confidence            332 2222210          012  44444 8999999999999999888884 36777777753  4554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.16  E-value=0.18  Score=53.46  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |++++|+|.|.|.+|.++|+.|.+.|..-+.|.|.+
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            567899999999999999999999999778888865

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.12  E-value=2.6  Score=46.89  Aligned_cols=210  Identities=11%  Similarity=0.108  Sum_probs=109.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc-----cC----CCC-ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK-----GY----PGT-KSA  348 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~-----~~----~~a-~~i  348 (535)
                      ++|+|.|.|.||..+|-.|++.|  .+|+++             |+|.+.+.++.+..-.+.     .+    .+. -.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-------------D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~   68 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-------------DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF   68 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-------------ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE
Confidence            57999999999999999999984  789984             355555444432211000     00    000 011


Q ss_pred             CCCCc--cccceEEeecccccccc----cccccc----------c------cceEEEecCCCC-CCHHHHHHHHhC--C-
Q psy1913         349 PTDIM--FDKVDILVPAAIEKVIR----KSNADK----------V------QAKIIVEAANGP-LTPAAHAMLLKK--N-  402 (535)
Q Consensus       349 ~~ell--~~~~DILiPaA~~~~It----~~na~~----------i------~AkiIvEgAN~p-~T~eA~~iL~~r--G-  402 (535)
                      +.++-  -.+||+++-|-..-.-.    .++...          |      ..-||.+..-.| +|.+....|.++  | 
T Consensus        69 t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~  148 (473)
T PLN02353         69 STDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGI  148 (473)
T ss_pred             EcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCC
Confidence            11221  25899999886533311    011111          1      135677777777 567777777764  4 


Q ss_pred             ---ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccc
Q psy1913         403 ---VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT  479 (535)
Q Consensus       403 ---I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~  479 (535)
                         |.+-|.++. -|=.+-.+    .+...+--|-.+.. +.++..+.+.+++..+.+   ...-..++...++.++   
T Consensus       149 ~f~v~~~PErl~-~G~a~~d~----~~p~riViG~~~~~-~~~~a~~~~~~lY~~~~~---~~~i~~~s~~~AE~~K---  216 (473)
T PLN02353        149 NFQILSNPEFLA-EGTAIEDL----FKPDRVLIGGRETP-EGQKAVQALKDVYAHWVP---EERIITTNLWSAELSK---  216 (473)
T ss_pred             CeEEEECCCccC-CCCccccc----CCCCEEEEccCCch-hhHHHHHHHHHHHHHhhc---CCCEEecCHHHHHHHH---
Confidence               789999875 44333322    23222211211100 001223444555554321   0011123444555555   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Q psy1913         480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSA  520 (535)
Q Consensus       480 e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~a  520 (535)
                         ++..-....-..-.+++..+|++.+  +|.++..-..+
T Consensus       217 ---~~eN~~ra~~Iaf~NEla~lce~~g--iD~~eV~~~~~  252 (473)
T PLN02353        217 ---LAANAFLAQRISSVNAMSALCEATG--ADVSQVSHAVG  252 (473)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhC
Confidence               4445555555566678888888885  67766554433

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.11  E-value=0.41  Score=49.87  Aligned_cols=50  Identities=26%  Similarity=0.258  Sum_probs=41.7

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+||...++          ..|+  +++|++|+|.| ...||.-+|.+|.++||.|+.
T Consensus       134 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVti  184 (287)
T PRK14173        134 LEPCTPAGVVRLLK----------HYGI--PLAGKEVVVVGRSNIVGKPLAALLLREDATVTL  184 (287)
T ss_pred             CCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            46899999876666          4566  58999999999 567899999999999998764

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=93.11  E-value=0.41  Score=50.09  Aligned_cols=50  Identities=18%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||...++          ..|+  +++|++|+|.|= ..||.-+|.+|.++||.|+.
T Consensus       146 ~~PcTp~avi~lL~----------~~~i--~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtv  196 (299)
T PLN02516        146 FLPCTPKGCLELLS----------RSGI--PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTV  196 (299)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence            46899999876665          4566  589999999995 56899999999999998776

>PLN00203 glutamyl-tRNA reductase

Probab=93.10  E-value=0.29  Score=54.88  Aligned_cols=104  Identities=9%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.+++|.|.|.|.+|..+++.|...|++-|.|.+            -+.+.+..+..+.+.+. . ....++.  +. -
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n------------Rs~era~~La~~~~g~~-i-~~~~~~dl~~a-l  327 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN------------RSEERVAALREEFPDVE-I-IYKPLDEMLAC-A  327 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe------------CCHHHHHHHHHHhCCCc-e-EeecHhhHHHH-H
Confidence            47899999999999999999999999975343332            33455555555432110 0 0011111  22 2


Q ss_pred             ccceEEeecc--cccccccccccccc--------ceEEEecCCCC-CCHHHH
Q psy1913         355 DKVDILVPAA--IEKVIRKSNADKVQ--------AKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       355 ~~~DILiPaA--~~~~It~~na~~i~--------AkiIvEgAN~p-~T~eA~  395 (535)
                      .+|||+|-|+  ...+|+.+.+..+.        -++++.-|... +.|+..
T Consensus       328 ~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~  379 (519)
T PLN00203        328 AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS  379 (519)
T ss_pred             hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc
Confidence            5899999886  46678888777653        24899999876 666544

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.07  E-value=0.045  Score=55.16  Aligned_cols=119  Identities=14%  Similarity=0.294  Sum_probs=64.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV  357 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~  357 (535)
                      |++.+|+|.|.|-+|..+|+.|...|..=+.+.|.+       =  ++...|-+..--.-.-.+-+.++.....+.+...
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D-------~--ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp   92 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD-------T--VSLSNLQRQVLHSDANIGQPKVESAKDALTQINP   92 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC-------c--ccccCcccceeeeHhhCCCcHHHHHHHHHHHHCC
Confidence            467899999999999999999999998767666643       1  3332222110000000011111111101222222


Q ss_pred             eEEeeccccccccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLT-PAAHAMLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T-~eA~~iL~~rGI~vi  406 (535)
                      ++-|- +....++.+|+..+  .+-+|+.+.-++.+ ....+...+.||.++
T Consensus        93 ~v~i~-~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v  143 (240)
T TIGR02355        93 HIAIN-PINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLV  143 (240)
T ss_pred             CcEEE-EEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence            22222 22345566666554  46788877766633 344566788888775

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=93.07  E-value=0.08  Score=52.98  Aligned_cols=119  Identities=17%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-CCcccCCCCcccCCCCcccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-GTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g~v~~~~~a~~i~~ell~~~  356 (535)
                      |++++|+|.|.|-+|..+|+.|...|..=+.|.|.+       =  ++...|-+..--. ..+...+.++.....+....
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~--ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n   95 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------T--PELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN   95 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------c--cChhhhccccccChhhcCchHHHHHHHHHHHHhC
Confidence            457899999999999999999999998766666542       2  4444443211000 00000000100000123334


Q ss_pred             ceEEeeccccccccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTP-AAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~-eA~~iL~~rGI~vi  406 (535)
                      .||-|-+- ...++++|+..+  .+-+|+.+.-++.|. ...++..++||.++
T Consensus        96 p~v~v~~~-~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i  147 (231)
T PRK08328         96 SDIKIETF-VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV  147 (231)
T ss_pred             CCCEEEEE-eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence            45555552 334677776554  467888877555443 34456678898775

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.05  E-value=0.38  Score=51.55  Aligned_cols=51  Identities=22%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      +-.+.|..||...++          ..+.  +++|++|+|.| ...||.-+|.+|.+++|.|..
T Consensus       209 ~f~PCTp~avielL~----------~y~i--~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTi  260 (364)
T PLN02616        209 LFVPCTPKGCIELLH----------RYNV--EIKGKRAVVIGRSNIVGMPAALLLQREDATVSI  260 (364)
T ss_pred             CCCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccccHHHHHHHHHCCCeEEE
Confidence            346899999875555          4565  58999999999 567899999999999998865

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.05  E-value=0.071  Score=53.63  Aligned_cols=119  Identities=20%  Similarity=0.250  Sum_probs=61.7

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKV  357 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~  357 (535)
                      |+.++|.|.|.|.||.++|+.|.+.|..=+.+.|.       +=  ++...|-+..-...+-.+-+.++.+...+.....
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~-------D~--V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP   79 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF-------DV--VCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP   79 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC-------CE--ECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence            35789999999999999999999999755555543       32  4444443321100000011111111111222222


Q ss_pred             eEEeeccccccccccccccc---cceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      ++-|-+ ....++++|...+   +.-+|+.+.-.+ ..-...+..++++|.++
T Consensus        80 ~~~V~~-~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I  131 (231)
T cd00755          80 ECEVDA-VEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVI  131 (231)
T ss_pred             CcEEEE-eeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEE
Confidence            222221 1234455555544   245777764443 33345566788888775

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.03  E-value=0.12  Score=54.88  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .|++++|+|+|+|++|..+|+.|.+.|.+|+.
T Consensus        14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv   45 (330)
T PRK05479         14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV   45 (330)
T ss_pred             hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999999999998875

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.01  E-value=0.047  Score=56.17  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=30.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |++.+|+|.|.|.||.++|+.|.+.|..=+.|.|.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            467899999999999999999999996556666643

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.96  E-value=0.42  Score=49.63  Aligned_cols=49  Identities=22%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.|.+||...++          ..++  +++|++|+|.|= ..||.-+|.+|.+++|.|..
T Consensus       137 ~PcTp~avi~ll~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVti  186 (282)
T PRK14182        137 RPCTPAGVMRMLD----------EARV--DPKGKRALVVGRSNIVGKPMAMMLLERHATVTI  186 (282)
T ss_pred             CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            5889999876666          4566  479999999995 66899999999999997765

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.90  E-value=0.54  Score=49.00  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=40.8

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||..-++          ..+.  +++||+|+|.|= ..||.-++.+|.++||.|+.
T Consensus       138 ~~PcTp~av~~lL~----------~y~i--~l~GK~vvViGrS~iVGkPla~lL~~~~ATVti  188 (288)
T PRK14171        138 FIPCTALGCLAVIK----------KYEP--NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTI  188 (288)
T ss_pred             CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            36889999876655          4565  589999999995 56899999999999998764

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.82  E-value=0.22  Score=51.03  Aligned_cols=113  Identities=17%  Similarity=0.262  Sum_probs=74.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++|.|+|+||+|..+++-|.+.|.    .|++             +|.+.+.+....++.|       .+..++  ++. 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v-------------~~r~~~~~~~l~~~~g-------~~~~~~~~e~~-   61 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIIC-------------SDLNVSNLKNASDKYG-------ITITTNNNEVA-   61 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEE-------------ECCCHHHHHHHHHhcC-------cEEeCCcHHHH-
Confidence            479999999999999999999884    4555             3355666666555443       222222  343 


Q ss_pred             ccceEEeeccccccccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCceeecccccccc
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKVQA-KIIVEAANGPLTPAAHAMLLK--KNVLIIPDIFANAG  414 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i~A-kiIvEgAN~p~T~eA~~iL~~--rGI~viPD~laNaG  414 (535)
                      .+|||+|-|.....+.+   +..+.++. ++|+.-+-|-......+.|..  +=+.++|-.-+-.|
T Consensus        62 ~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg  127 (272)
T PRK12491         62 NSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVG  127 (272)
T ss_pred             hhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHc
Confidence            48999999987654433   22223333 588888888777777777743  33567887765544

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.80  E-value=0.14  Score=50.42  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|++|.|.|.|.||..-++.|.+.|++|+.|+
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA   39 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence            3689999999999999999999999999998876

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.66  E-value=0.091  Score=53.06  Aligned_cols=36  Identities=25%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|.|.|.|.+|..+|+.|...|..=+.|.|.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            467899999999999999999999998767777654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.63  E-value=0.28  Score=53.13  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccC-CCCcccCC--CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGY-PGTKSAPT--DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~-~~a~~i~~--ell~~  355 (535)
                      ++|+|.|.|+||+.+|+.|++.| ..|..             +|-..+.+.+.....+. +.-. .++...+.  +++. 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i-------------AdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~-   67 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI-------------ADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK-   67 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEE-------------EeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh-
Confidence            57999999999999999999999 77776             45667777777665422 1100 01111111  3443 


Q ss_pred             cceEEeecccccccccccc-ccccc-eEEEecCCCC-CCHHHHHHHHhCCceeeccccccccCcchhhHhhhh
Q psy1913         356 KVDILVPAAIEKVIRKSNA-DKVQA-KIIVEAANGP-LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK  425 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na-~~i~A-kiIvEgAN~p-~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~q  425 (535)
                      +.|+.|-|++..+ +..-+ .-+++ .-++.-+|.. ..-+-++...+.||+++|+. --+=|++..|..+..
T Consensus        68 ~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a~  138 (389)
T COG1748          68 DFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYAA  138 (389)
T ss_pred             cCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHHH
Confidence            4499999987553 22111 11122 3355666665 33566678899999999985 455578888777654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.55  E-value=1.7  Score=48.84  Aligned_cols=136  Identities=14%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      --+.|+..+++..+.........+  .++++++|.|.|.|.+|+.++..|.+.|++|+. .+            -+.+..
T Consensus       351 TD~~G~~~~l~~~~~~~~~~~~~~--~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i-~n------------R~~e~a  415 (529)
T PLN02520        351 TDYIGAISAIEDGLRASGSSPASG--SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVI-AN------------RTYERA  415 (529)
T ss_pred             ccHHHHHHHHHhhhcccccccccc--cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-Ec------------CCHHHH
Confidence            347888888874321000000012  247899999999999999999999999998765 33            344555


Q ss_pred             HHHHHHcCCcccCCCCcccCC--CCccccceEEeeccccccccccc-----cccc-cceEEEecCCCC-CCHHHHHHHHh
Q psy1913         330 HTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSN-----ADKV-QAKIIVEAANGP-LTPAAHAMLLK  400 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~n-----a~~i-~AkiIvEgAN~p-~T~eA~~iL~~  400 (535)
                      .+..++.+.     ....++.  +.+..++||+|-|+.-+.-...+     ...+ ...+|.+-.=+| .|+=... -++
T Consensus       416 ~~la~~l~~-----~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~-A~~  489 (529)
T PLN02520        416 KELADAVGG-----QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLRE-AEE  489 (529)
T ss_pred             HHHHHHhCC-----ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHH-HHH
Confidence            554443221     0011111  22334689999777644322111     1112 246788888887 4654433 355


Q ss_pred             CCceee
Q psy1913         401 KNVLII  406 (535)
Q Consensus       401 rGI~vi  406 (535)
                      +|..++
T Consensus       490 ~G~~~~  495 (529)
T PLN02520        490 SGAIIV  495 (529)
T ss_pred             CCCeEe
Confidence            665443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.47  E-value=0.23  Score=50.67  Aligned_cols=69  Identities=10%  Similarity=0.099  Sum_probs=47.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|.|.+|..+|..|.+.|.+|++             .|.+.+.+.+..+. |.+..     ..+. +. ..+||+
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~-------------~d~~~~~~~~a~~~-g~~~~-----~~~~~~~-~~~aDl   60 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYG-------------VSRRESTCERAIER-GLVDE-----ASTDLSL-LKDCDL   60 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHC-CCccc-----ccCCHhH-hcCCCE
Confidence            3799999999999999999999999887             33555555554432 32211     1112 32 258999


Q ss_pred             Eeeccccccc
Q psy1913         360 LVPAAIEKVI  369 (535)
Q Consensus       360 LiPaA~~~~I  369 (535)
                      +|-|.....+
T Consensus        61 Vilavp~~~~   70 (279)
T PRK07417         61 VILALPIGLL   70 (279)
T ss_pred             EEEcCCHHHH
Confidence            9999886554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.44  E-value=0.15  Score=49.05  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +|+|.|.|..|..+|..++..|..|+-
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l   27 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTL   27 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999999987

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.42  E-value=0.31  Score=48.39  Aligned_cols=36  Identities=31%  Similarity=0.506  Sum_probs=31.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|+|.|.|.+|.++|+.|...|..-+.+.|.+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            467899999999999999999999999777777754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02256 arogenate dehydrogenase

Probab=92.42  E-value=0.17  Score=52.80  Aligned_cols=87  Identities=15%  Similarity=0.178  Sum_probs=54.1

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      .++++|+|.|+|++|+.+|+.|.+.|.+|+++..+        -     .  .+...+.|       ....++  +++..
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~--------~-----~--~~~a~~~g-------v~~~~~~~e~~~~   91 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS--------D-----Y--SDIAAELG-------VSFFRDPDDFCEE   91 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc--------c-----H--HHHHHHcC-------CeeeCCHHHHhhC
Confidence            36789999999999999999999999888874321        1     1  12222332       111222  34334


Q ss_pred             cceEEeeccccccccccccccc-----c-ceEEEecCC
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV-----Q-AKIIVEAAN  387 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i-----~-AkiIvEgAN  387 (535)
                      +||++|-|.....+ .+-+.++     + -.+|++-+.
T Consensus        92 ~aDvVilavp~~~~-~~vl~~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256         92 HPDVVLLCTSILST-EAVLRSLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             CCCEEEEecCHHHH-HHHHHhhhhhccCCCCEEEecCC
Confidence            79999999875543 2322333     1 246777666

>PRK12861 malic enzyme; Reviewed

Probab=92.37  E-value=1.1  Score=52.49  Aligned_cols=172  Identities=10%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHH
Q psy1913         179 RITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTA  258 (535)
Q Consensus       179 r~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~  258 (535)
                      .+. +|+..+.+. | | +  |-=+|+....  ---|.++|+.....      -|+-.          --.-||-=+..+
T Consensus       120 ~~v-~~v~a~~~~-f-g-~--i~lED~~~p~--~f~il~~~~~~~~i------pvf~D----------D~qGTa~v~lA~  175 (764)
T PRK12861        120 KLV-DIIAGLEPT-F-G-G--INLEDIKAPE--CFTVERKLRERMKI------PVFHD----------DQHGTAITVSAA  175 (764)
T ss_pred             HHH-HHHHHHHhh-c-C-C--ceeeeccCch--HHHHHHHHHhcCCC------Ceecc----------ccchHHHHHHHH
Confidence            456 888888863 3 2 2  4556776543  22456777653221      11211          123355444555


Q ss_pred             HHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe--EEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK--CLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       259 i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak--VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +.+++      +..|.  +++..||+|.|.|..|..++++|.+.|.+  =+-+.|++|.|+.....+++.... .+.+.+
T Consensus       176 llnal------~~~gk--~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~-~~a~~~  246 (764)
T PRK12861        176 FINGL------KVVGK--SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKE-RFAQET  246 (764)
T ss_pred             HHHHH------HHhCC--ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHH-HHHhhc
Confidence            55443      45564  48999999999999999999999999984  357899999999876411553332 233221


Q ss_pred             CCcccCCCCcccCC-CCccccceEEeeccccccccccccccccc-eEEEecCCCC--CCHH
Q psy1913         337 GTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANGP--LTPA  393 (535)
Q Consensus       337 g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~p--~T~e  393 (535)
                      .       .  -+- +.+. .+||||=++.++++|++-+..+.. .||---||--  +|||
T Consensus       247 ~-------~--~~L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe  297 (764)
T PRK12861        247 D-------A--RTLAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE  297 (764)
T ss_pred             C-------C--CCHHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence            0       0  011 3443 369999999999999999888844 6777777743  4665

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.34  E-value=0.35  Score=49.51  Aligned_cols=28  Identities=25%  Similarity=0.152  Sum_probs=26.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.+|..+|..|+..|..|+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l   32 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLL   32 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence            5899999999999999999999999887

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.30  E-value=0.24  Score=52.58  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|+|.|.|.+|..+|+.|.+.|..=+.|.|.+
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999999777777764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.13  E-value=0.27  Score=55.83  Aligned_cols=111  Identities=16%  Similarity=0.219  Sum_probs=72.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      .+|+|.|||.+|+.+++.|.+.|..+++             -|.|++.+.+.++ .|.-.-|-+++  +.++|    -.+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvv-------------ID~d~~~v~~~~~-~g~~v~~GDat--~~~~L~~agi~~  464 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITV-------------LERDISAVNLMRK-YGYKVYYGDAT--QLELLRAAGAEK  464 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEE-------------EECCHHHHHHHHh-CCCeEEEeeCC--CHHHHHhcCCcc
Confidence            5899999999999999999999999988             4577777776654 33211111121  11333    258


Q ss_pred             ceEEeecccccccccc---ccccc--cceEEEecCCCCCCHHHHHHHHhCCce-eeccccc
Q psy1913         357 VDILVPAAIEKVIRKS---NADKV--QAKIIVEAANGPLTPAAHAMLLKKNVL-IIPDIFA  411 (535)
Q Consensus       357 ~DILiPaA~~~~It~~---na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~-viPD~la  411 (535)
                      ||++|-|.-....|..   .+.+.  ..++|+=+.|    ++..+.|++.|+. ++|+-+-
T Consensus       465 A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~----~~~~~~L~~~Ga~~vv~e~~e  521 (601)
T PRK03659        465 AEAIVITCNEPEDTMKIVELCQQHFPHLHILARARG----RVEAHELLQAGVTQFSRETFS  521 (601)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCC----HHHHHHHHhCCCCEEEccHHH
Confidence            9988877765433322   23333  3577775543    6777889999986 4576543

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=92.07  E-value=0.4  Score=48.97  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             cEEEEEc-cccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~  357 (535)
                      .+|+|.| +|.+|+.+++.+.+ .+++++++.|+...-.  .|  -|..++....       .+ +....++ +-+..++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~--~~~~~~~~~~-------~~-gv~~~~d~~~l~~~~   69 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QG--TDAGELAGIG-------KV-GVPVTDDLEAVETDP   69 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cC--CCHHHhcCcC-------cC-CceeeCCHHHhcCCC
Confidence            4899999 79999999999986 6899999998532211  13  3333322110       00 1222233 2234579


Q ss_pred             eEEeeccccccccccccccc---cceEEEecCCCCCCHH-HHHH---HHhCCcee
Q psy1913         358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPA-AHAM---LLKKNVLI  405 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~e-A~~i---L~~rGI~v  405 (535)
                      ||+|-|+.+.. +.+++...   ...+|+|-- + .|++ ++++   -++.|+.+
T Consensus        70 DvVIdfT~p~~-~~~~~~~al~~g~~vVigtt-g-~~~e~~~~l~~aA~~~g~~v  121 (266)
T TIGR00036        70 DVLIDFTTPEG-VLNHLKFALEHGVRLVVGTT-G-FSEEDKQELADLAEKAGIAA  121 (266)
T ss_pred             CEEEECCChHH-HHHHHHHHHHCCCCEEEECC-C-CCHHHHHHHHHHHhcCCccE
Confidence            99999995443 34444333   457887764 3 4553 3333   24545444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.05  E-value=0.23  Score=48.10  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc------------cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK------------SA  348 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~------------~i  348 (535)
                      ++|+|.|.|-||.-+|-.|++.|.+|++             .|+|.+.+..+.+..-.+.. |+-.            ..
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g-------------~D~~~~~v~~l~~g~~p~~E-~~l~~ll~~~~~~~~l~~   66 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIG-------------VDIDEEKVEALNNGELPIYE-PGLDELLKENVSAGRLRA   66 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEE-------------E-S-HHHHHHHHTTSSSS-C-TTHHHHHHHHHHTTSEEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEE-------------EeCChHHHHHHhhccccccc-cchhhhhccccccccchh
Confidence            5899999999999999999999999999             66777766665432211110 1100            01


Q ss_pred             CCCCc--cccceEEeeccccccccccccccc----------------cceEEEecCCCC-CCH-HHHHHHHhCC------
Q psy1913         349 PTDIM--FDKVDILVPAAIEKVIRKSNADKV----------------QAKIIVEAANGP-LTP-AAHAMLLKKN------  402 (535)
Q Consensus       349 ~~ell--~~~~DILiPaA~~~~It~~na~~i----------------~AkiIvEgAN~p-~T~-eA~~iL~~rG------  402 (535)
                      +.++-  -.+||+++-|-....-. ++...+                .+-+|.+..=.| +|. ....+|++.+      
T Consensus        67 t~~~~~ai~~adv~~I~VpTP~~~-~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f  145 (185)
T PF03721_consen   67 TTDIEEAIKDADVVFICVPTPSDE-DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDF  145 (185)
T ss_dssp             ESEHHHHHHH-SEEEE----EBET-TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCE
T ss_pred             hhhhhhhhhccceEEEecCCCccc-cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCC
Confidence            11111  25799999887633322 222111                135566666666 555 4667888755      


Q ss_pred             -ceeeccccc
Q psy1913         403 -VLIIPDIFA  411 (535)
Q Consensus       403 -I~viPD~la  411 (535)
                       +.+.|+++.
T Consensus       146 ~la~~PErl~  155 (185)
T PF03721_consen  146 HLAYSPERLR  155 (185)
T ss_dssp             EEEE------
T ss_pred             eEEECCCccC
Confidence             678888765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=92.03  E-value=0.44  Score=50.22  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHH-HHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYF-RRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      .|.|++|.|.|+|++|+.+|+.| ...|.+|++        ||+..     ....   ..        ..+..+.  +++
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~--------~d~~~-----~~~~---~~--------~~~~~~~l~ell  198 (332)
T PRK08605        143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA--------YDPFP-----NAKA---AT--------YVDYKDTIEEAV  198 (332)
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE--------ECCCc-----cHhH---Hh--------hccccCCHHHHH
Confidence            47899999999999999999999 457899987        34332     1110   00        0111222  343


Q ss_pred             cccceEEeecccccccccc-----cccccc-ceEEEecCCCCC--CHHHHHHHHhCCc
Q psy1913         354 FDKVDILVPAAIEKVIRKS-----NADKVQ-AKIIVEAANGPL--TPAAHAMLLKKNV  403 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~-----na~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI  403 (535)
                       ..||+++-|......|..     ....++ -.+++..+-+.+  +....+.|.+..|
T Consensus       199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i  255 (332)
T PRK08605        199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI  255 (332)
T ss_pred             -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence             479999999775544432     233343 358888888884  3444456665554

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.98  E-value=1.3  Score=46.40  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=39.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHH----CCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRR----GRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e----~GakVVa  308 (535)
                      -.+.|..||...++          ..++  +++|++|+|.|= ..||+-+|.+|.+    .++.|..
T Consensus       138 ~~PcTp~ail~ll~----------~y~i--~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~  192 (295)
T PRK14174        138 FVSCTPYGILELLG----------RYNI--ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTI  192 (295)
T ss_pred             cCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEE
Confidence            36899999865544          4565  589999999995 6689999999987    6887765

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=91.96  E-value=1.3  Score=47.11  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHC----CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG----RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~----GakVVaVsD~  312 (535)
                      .+|+|-|||-||+.+.+.|.+.    ..+||||-|.
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~   37 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL   37 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            4799999999999999999874    5789998763

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.95  E-value=0.76  Score=49.66  Aligned_cols=31  Identities=26%  Similarity=0.485  Sum_probs=29.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +++++|+|.|.|.+|..+|+.|++.|++|++
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~   33 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVIL   33 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            5789999999999999999999999999887

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.91  E-value=0.65  Score=48.25  Aligned_cols=50  Identities=26%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||...++          ..|.  +++|++|+|.|= ..||.-+|.+|.++||.|+.
T Consensus       137 ~~PcTp~aii~lL~----------~y~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~  187 (282)
T PRK14180        137 LESCTPKGIMTMLR----------EYGI--KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTT  187 (282)
T ss_pred             cCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            36889999887666          4565  589999999995 67899999999999998865

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.86  E-value=0.42  Score=53.48  Aligned_cols=93  Identities=20%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCC----------Cc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPG----------TK  346 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~----------a~  346 (535)
                      +.+.+|+|.|+|.+|..++..+...|++|++             .|.+.+.+...+. .|. ...++.          ++
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v-------------~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~  227 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRA-------------FDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAK  227 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHH-cCCeEEecccccccccccccee
Confidence            4578999999999999999999999999777             3455555544333 331 101110          22


Q ss_pred             ccCC-------CCc---cccceEEeeccc------cccccccccccccc-eEEEe
Q psy1913         347 SAPT-------DIM---FDKVDILVPAAI------EKVIRKSNADKVQA-KIIVE  384 (535)
Q Consensus       347 ~i~~-------ell---~~~~DILiPaA~------~~~It~~na~~i~A-kiIvE  384 (535)
                      .++.       +++   ..++||+|-|++      +..||.+-...++. .+|+.
T Consensus       228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            2222       112   257999999983      22477777777753 34443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.76  E-value=0.27  Score=48.42  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=55.9

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-c--ccCCC-CcccCC-CCcc
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-I--KGYPG-TKSAPT-DIMF  354 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v--~~~~~-a~~i~~-ell~  354 (535)
                      ++|.|.| .|++|..+++.|.+.|..|+.+ +            -+.+.+.+....... +  .++.. ....+. +.+ 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~-~------------r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~-   66 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIG-S------------RDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAA-   66 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEE-E------------cCHHHHHHHHHHHHhhccccCCCceEEEeChHHHH-
Confidence            3799997 9999999999999999988753 2            233334333222100 0  01110 011122 222 


Q ss_pred             ccceEEeeccccccccc---cccccccceEEEecCCCC
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKVQAKIIVEAANGP  389 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i~AkiIvEgAN~p  389 (535)
                      .++|++|-|.....+..   +-.+.+..++|+..+|+.
T Consensus        67 ~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi  104 (219)
T TIGR01915        67 KRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL  104 (219)
T ss_pred             hcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence            47899998877554432   112234458999999985

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14851 hypothetical protein; Provisional

Probab=91.76  E-value=0.11  Score=59.92  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=67.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      |++++|+|.|.|-||..+|..|...|..=+.|.|.+       =  +++..|-+..- ....+ +-++++.....+.+..
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D-------~--ve~sNLNRQ~~~~~~dv-G~~Kv~v~~~~l~~in  110 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD-------Q--FEPVNVNRQFGARVPSF-GRPKLAVMKEQALSIN  110 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC-------E--ecccccccCcCcChhhC-CCHHHHHHHHHHHHhC
Confidence            467899999999999999999999998767766643       1  33333322110 00000 1111111111233333


Q ss_pred             ceEEeeccccccccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTP---AAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~---eA~~iL~~rGI~vi  406 (535)
                      .++-|-+ ...-|+.+|+..+  .+-+|+++..++...   ...+...++||.++
T Consensus       111 P~~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i  164 (679)
T PRK14851        111 PFLEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI  164 (679)
T ss_pred             CCCeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence            3443333 2345677887765  578999999876322   23344567888775

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.75  E-value=0.74  Score=48.10  Aligned_cols=50  Identities=20%  Similarity=0.176  Sum_probs=40.2

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVa  308 (535)
                      -.+.|..||...++          ..++  +++|++|+|.|- ..||.-+|.+|.++    +|.|+.
T Consensus       136 ~~PcTp~av~~lL~----------~~~i--~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtv  190 (293)
T PRK14185        136 FVSATPNGILELLK----------RYHI--ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTV  190 (293)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEE
Confidence            46899999887666          4565  489999999995 66899999999988    577654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=91.74  E-value=0.43  Score=47.93  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++|.|+|+|++|..+++.|.+.|.    .|++..|            .+.+.+....+ .|       ....+.  ++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~------------r~~~~~~~~~~-~g-------~~~~~~~~e~~-   59 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADD------------SNPARRDVFQS-LG-------VKTAASNTEVV-   59 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeC------------CCHHHHHHHHH-cC-------CEEeCChHHHH-
Confidence            479999999999999999999987    6665212            33444433332 22       222222  333 


Q ss_pred             ccceEEeeccccccccc---ccccccc-ceEEEecCCC
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANG  388 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~  388 (535)
                      .+|||+|.|.....+.+   +-.+.+. -++|+.-+++
T Consensus        60 ~~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g   97 (266)
T PLN02688         60 KSSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAG   97 (266)
T ss_pred             hcCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCC
Confidence            48999999975333221   1112222 3677765554

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.67  E-value=0.78  Score=48.04  Aligned_cols=49  Identities=18%  Similarity=0.140  Sum_probs=40.0

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHC----CCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRG----RAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~----GakVVa  308 (535)
                      .+.|..||...++          ..|.  +++|++|+|.| ...||.-+|.+|.++    +|.|..
T Consensus       141 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv  194 (297)
T PRK14168        141 LPCTPAGIQEMLV----------RSGV--ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTI  194 (297)
T ss_pred             cCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEE
Confidence            5889999876666          4565  58999999999 567899999999988    677654

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.65  E-value=0.56  Score=49.01  Aligned_cols=82  Identities=21%  Similarity=0.155  Sum_probs=58.7

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCH
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi  326 (535)
                      .+.|..||...++          ..|+  +++|++|+|.|= ..||.-++.+|.++||.|.. +.++       -  -| 
T Consensus       140 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~-chs~-------T--~~-  196 (294)
T PRK14187        140 IPCTPKGCLYLIK----------TITR--NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTT-VHSA-------T--RD-  196 (294)
T ss_pred             cCcCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHhhCCCEEEE-eCCC-------C--CC-
Confidence            5789999876555          4565  589999999995 66899999999999999875 3221       1  11 


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD  375 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~  375 (535)
                        |.                     -+...+||+|-|+. .+.|+++...
T Consensus       197 --l~---------------------~~~~~ADIvVsAvGkp~~i~~~~ik  223 (294)
T PRK14187        197 --LA---------------------DYCSKADILVAAVGIPNFVKYSWIK  223 (294)
T ss_pred             --HH---------------------HHHhhCCEEEEccCCcCccCHHHcC
Confidence              11                     12357899998887 6667766554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.61  E-value=0.42  Score=48.87  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      ++|+|.|.|.+|..+|..|++.|..|+.             .|.|.+.+.+..
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~-------------~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTL-------------VDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEE-------------EeCCHHHHHHHH
Confidence            4799999999999999999999999987             446666665543

>PRK14982 acyl-ACP reductase; Provisional

Probab=91.51  E-value=1.2  Score=47.59  Aligned_cols=132  Identities=18%  Similarity=0.281  Sum_probs=77.9

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC-CC-eEEEEecCCceEeCCCCCCCCH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG-RA-KCLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~-Ga-kVVaVsD~~G~iynp~G~dLDi  326 (535)
                      .|.+-...+++      ...+.+|.  ++++++|+|.|. |.+|+.+|+.|.+. |. +|+.+ +            -+.
T Consensus       133 ~T~~ll~~~V~------la~~~lg~--~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv-~------------R~~  191 (340)
T PRK14982        133 HTAYVICRQVE------QNAPRLGI--DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLV-A------------RQQ  191 (340)
T ss_pred             hHHHHHHHHHH------HhHHHhcc--CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE-c------------CCH
Confidence            45544444444      33445664  589999999998 89999999999864 64 55542 2            223


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccc--cc-cccccccccccceEEEecCCCC-CCHHHHHHHHhC
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAI--EK-VIRKSNADKVQAKIIVEAANGP-LTPAAHAMLLKK  401 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~--~~-~It~~na~~i~AkiIvEgAN~p-~T~eA~~iL~~r  401 (535)
                      ..+.+...+.+      .+...+- +.+ .++|+++=||-  .. .|+.+...  +-.+|+..|--. +.|+..    + 
T Consensus       192 ~rl~~La~el~------~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~----~-  257 (340)
T PRK14982        192 ERLQELQAELG------GGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ----G-  257 (340)
T ss_pred             HHHHHHHHHhc------cccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC----C-
Confidence            44444443321      1111111 223 36899888775  33 26665442  468999999866 666441    1 


Q ss_pred             CceeeccccccccCcchhhH
Q psy1913         402 NVLIIPDIFANAGGVTVSYF  421 (535)
Q Consensus       402 GI~viPD~laNaGGVivSy~  421 (535)
                           ||+..--||++.-.+
T Consensus       258 -----~~V~v~~gG~V~~p~  272 (340)
T PRK14982        258 -----PGIHVLKGGIVEHSL  272 (340)
T ss_pred             -----CCEEEEeCCccccCC
Confidence                 555555566654443

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.46  E-value=0.74  Score=47.90  Aligned_cols=49  Identities=18%  Similarity=0.163  Sum_probs=40.4

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHH--CCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRR--GRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e--~GakVVa  308 (535)
                      .+.|..||...++          ..|+  +++|++|+|.| ...||.-+|.+|.+  +++.|..
T Consensus       138 ~PcTp~av~~ll~----------~~~i--~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtv  189 (284)
T PRK14193        138 LPCTPRGIVHLLR----------RYDV--ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTL  189 (284)
T ss_pred             CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEE
Confidence            5899999886666          4566  48999999999 56789999999998  7888754

>KOG2380|consensus

Probab=91.41  E-value=0.33  Score=51.68  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      -.+|+|+||||.|+.+|+.|.+.|..|++-+ +              ++-.+++++.|       ...++.  ++.+...
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hs-R--------------sdyssaa~~yg-------~~~ft~lhdlcerhp  109 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHS-R--------------SDYSSAAEKYG-------SAKFTLLHDLCERHP  109 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecC-c--------------chhHHHHHHhc-------ccccccHHHHHhcCC
Confidence            5799999999999999999999999998822 1              11122333332       222333  5667788


Q ss_pred             eEEeecc
Q psy1913         358 DILVPAA  364 (535)
Q Consensus       358 DILiPaA  364 (535)
                      |+.+-|.
T Consensus       110 DvvLlct  116 (480)
T KOG2380|consen  110 DVVLLCT  116 (480)
T ss_pred             CEEEEEe
Confidence            9988886

>PLN02858 fructose-bisphosphate aldolase

Probab=91.35  E-value=0.47  Score=59.00  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=70.6

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      ..+|.++|+|++|..+|+.|.+.|+.|.+             .|.+.+...++.+.        ++...+. .=+...||
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v-------------~dr~~~~~~~l~~~--------Ga~~~~s~~e~a~~ad   62 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQA-------------FEISTPLMEKFCEL--------GGHRCDSPAEAAKDAA   62 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHc--------CCeecCCHHHHHhcCC
Confidence            56899999999999999999999999986             44666776666553        2333333 22335799


Q ss_pred             EEeeccccccccccc-------ccccc-ceEEEe-cCCCC-CCHHHHHHHHhCC--ceee
Q psy1913         359 ILVPAAIEKVIRKSN-------ADKVQ-AKIIVE-AANGP-LTPAAHAMLLKKN--VLII  406 (535)
Q Consensus       359 ILiPaA~~~~It~~n-------a~~i~-AkiIvE-gAN~p-~T~eA~~iL~~rG--I~vi  406 (535)
                      ++|-|........+-       +..++ -++|++ +...| ++.+..+.|.++|  +.|+
T Consensus        63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l  122 (1378)
T PLN02858         63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV  122 (1378)
T ss_pred             EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE
Confidence            999886533222211       22232 245555 44555 5677788899999  8765

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=91.33  E-value=0.47  Score=52.98  Aligned_cols=75  Identities=17%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH----------HHcCCcccC------CC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK----------ITKGTIKGY------PG  344 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~----------~~~g~v~~~------~~  344 (535)
                      ++|+|.|.|..|..+|..|+..|..|+.             .|.+.+.+.+..          .+.|.+..-      ..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l-------------~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~   74 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLL-------------YDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALAR   74 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence            5899999999999999999999999987             557777665531          223322110      00


Q ss_pred             CcccCC-CCccccceEEeeccccccc
Q psy1913         345 TKSAPT-DIMFDKVDILVPAAIEKVI  369 (535)
Q Consensus       345 a~~i~~-ell~~~~DILiPaA~~~~I  369 (535)
                      .+..+. +-+ .+||++|.|..++.-
T Consensus        75 i~~~~~~~~~-~~aDlViEav~E~~~   99 (507)
T PRK08268         75 LRPVEALADL-ADCDLVVEAIVERLD   99 (507)
T ss_pred             eEEeCCHHHh-CCCCEEEEcCcccHH
Confidence            111222 223 389999999776543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.30  E-value=0.5  Score=41.05  Aligned_cols=103  Identities=14%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cccce
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDKVD  358 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~~D  358 (535)
                      |+|.|+|.+|+.+++.|.+.+.+|+.|.             .|.+...+..+..  +.-+. +...+.+.|    -.++|
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid-------------~d~~~~~~~~~~~--~~~i~-gd~~~~~~l~~a~i~~a~   64 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVID-------------RDPERVEELREEG--VEVIY-GDATDPEVLERAGIEKAD   64 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEE-------------SSHHHHHHHHHTT--SEEEE-S-TTSHHHHHHTTGGCES
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEE-------------CCcHHHHHHHhcc--ccccc-ccchhhhHHhhcCccccC
Confidence            6899999999999999999777888843             6777776666543  11110 111111222    25788


Q ss_pred             EEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913         359 ILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       359 ILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~v  405 (535)
                      .++-++-....|-   ..+.++  ..++|+..-|    ++..+.|.+-|+-.
T Consensus        65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~----~~~~~~l~~~g~d~  112 (116)
T PF02254_consen   65 AVVILTDDDEENLLIALLARELNPDIRIIARVND----PENAELLRQAGADH  112 (116)
T ss_dssp             EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESS----HHHHHHHHHTT-SE
T ss_pred             EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHCCcCE
Confidence            8887776444333   333332  2577776654    56677888888743

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.29  E-value=0.5  Score=46.79  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+..+|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999998766666653

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.27  E-value=0.44  Score=49.07  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=60.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH----cCCcccCC------C-CcccC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT----KGTIKGYP------G-TKSAP  349 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~----~g~v~~~~------~-a~~i~  349 (535)
                      ++|+|.|.|++|..+|..|...|..|+.             .|.+.+.+.+..+.    .+.+..-.      + .+..+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~-------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   71 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVL-------------IDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEA   71 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEE-------------EECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeC
Confidence            5899999999999999999999999887             33555555444331    12111000      0 01111


Q ss_pred             C-CCccccceEEeecccccc-cc----ccccccccce-EEEecCCCCCCHHHHHHHH
Q psy1913         350 T-DIMFDKVDILVPAAIEKV-IR----KSNADKVQAK-IIVEAANGPLTPAAHAMLL  399 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~~~~-It----~~na~~i~Ak-iIvEgAN~p~T~eA~~iL~  399 (535)
                      . +-.-.+||++|.|..+.. +.    .+-...++.. +|+-..++....+..+.+.
T Consensus        72 ~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~  128 (311)
T PRK06130         72 GLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVT  128 (311)
T ss_pred             CHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcC
Confidence            1 111248999999987653 11    2222223333 5666777765445445553

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=91.24  E-value=0.94  Score=49.44  Aligned_cols=101  Identities=13%  Similarity=0.208  Sum_probs=66.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.+++|.|.|.|..|+.+++.|.+.|+.-+.|+.++            .+....+.++.+..    ....++.  +.+ 
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt------------~~ra~~La~~~~~~----~~~~~~~l~~~l-  240 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT------------IEKAQKITSAFRNA----SAHYLSELPQLI-  240 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC------------HHHHHHHHHHhcCC----eEecHHHHHHHh-
Confidence            4789999999999999999999999998777766553            23444444443210    0111121  222 


Q ss_pred             ccceEEeeccc--cccccccccccccceEEEecCCCC-CCHHHH
Q psy1913         355 DKVDILVPAAI--EKVIRKSNADKVQAKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       355 ~~~DILiPaA~--~~~It~~na~~i~AkiIvEgAN~p-~T~eA~  395 (535)
                      .++||+|-|+.  .-+|+.+.... +-.+++.-|... +.|+..
T Consensus       241 ~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~v~  283 (414)
T PRK13940        241 KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPKLG  283 (414)
T ss_pred             ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCcccc
Confidence            47999999976  56677655432 345888988865 666543

>PLN02858 fructose-bisphosphate aldolase

Probab=91.13  E-value=0.52  Score=58.63  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=71.4

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      .++|.+.|+|++|..+|+.|...|.+|++             .|.+.+.+.+....        ++...+. .-+..+||
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~--------Ga~~~~s~~e~~~~aD  382 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCG-------------YDVYKPTLVRFENA--------GGLAGNSPAEVAKDVD  382 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHc--------CCeecCCHHHHHhcCC
Confidence            37899999999999999999999999877             44555666555433        2222222 22335799


Q ss_pred             EEeecccc-----cccccc--cccccc-ceEEEecC-CCC-CCHHHHHHHHh--CCceeeccccccccCcc
Q psy1913         359 ILVPAAIE-----KVIRKS--NADKVQ-AKIIVEAA-NGP-LTPAAHAMLLK--KNVLIIPDIFANAGGVT  417 (535)
Q Consensus       359 ILiPaA~~-----~~It~~--na~~i~-AkiIvEgA-N~p-~T~eA~~iL~~--rGI~viPD~laNaGGVi  417 (535)
                      |++-|-..     .++.++  -+..++ -++|++-. ..| ++.+..+.+.+  +|+.|+=--+  +||..
T Consensus       383 vVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPV--sGg~~  451 (1378)
T PLN02858        383 VLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPV--SGGVK  451 (1378)
T ss_pred             EEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccC--CCChh
Confidence            99987662     333221  122232 24555544 445 45667777888  9998763222  55543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.07  E-value=0.46  Score=48.42  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=26.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.+|..+|..|...|..|+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~   31 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVM   31 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEE
Confidence            4799999999999999999999999887

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=91.03  E-value=0.38  Score=49.58  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      .||.|.|||+.|+.+++.|...   ++.+++|.|+.            .+...+....         ...++.  +++..
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~------------~~~~~~~~~~---------~~~~~~l~~ll~~   61 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA------------ADLPPALAGR---------VALLDGLPGLLAW   61 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC------------HHHHHHhhcc---------CcccCCHHHHhhc
Confidence            6899999999999999998753   47888876643            1222221111         223444  56788


Q ss_pred             cceEEeecccccccccccccccc--ceEEEe
Q psy1913         356 KVDILVPAAIEKVIRKSNADKVQ--AKIIVE  384 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i~--AkiIvE  384 (535)
                      ++|++|.||....+.+--..-++  +.+|+-
T Consensus        62 ~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~   92 (267)
T PRK13301         62 RPDLVVEAAGQQAIAEHAEGCLTAGLDMIIC   92 (267)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999987777654333333  344443

>PRK06153 hypothetical protein; Provisional

Probab=91.02  E-value=0.44  Score=51.57  Aligned_cols=117  Identities=9%  Similarity=0.097  Sum_probs=65.9

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH--cCCcc-cCCCCcccCCCCcc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT--KGTIK-GYPGTKSAPTDIMF  354 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~--~g~v~-~~~~a~~i~~ell~  354 (535)
                      |++++|+|.|+|-+|++++..|++.|..=+.+.|.+       =  ++..-|-+..-.  ...+. ..++++.....+..
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D-------~--Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~  244 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD-------D--FLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN  244 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC-------E--ecccccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence            467899999999999999999999998666655543       2  333333221100  00000 00111111111112


Q ss_pred             ccceEEeecccccccccccccccc-ceEEEecCCCCCC-HHHHHHHHhCCceee
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGPLT-PAAHAMLLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p~T-~eA~~iL~~rGI~vi  406 (535)
                      ...+|.   +....|+++|++.+. |-+|+.+.-+..+ ....+.+.+.||.+|
T Consensus       245 in~~I~---~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~I  295 (393)
T PRK06153        245 MRRGIV---PHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFI  295 (393)
T ss_pred             hCCeEE---EEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence            333442   122345777877664 7888888876643 345566788888654

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.97  E-value=0.57  Score=48.03  Aligned_cols=28  Identities=21%  Similarity=0.147  Sum_probs=26.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|++|..+|..|+..|..|+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~   32 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWL   32 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            5899999999999999999999999887

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=90.96  E-value=0.9  Score=42.96  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=28.5

Q ss_pred             EEEEEccccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913         282 TYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHD  313 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~  313 (535)
                      +|+|-|||-.|+.+++.+.. ....||+|.|..
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            79999999999999999984 578999998863

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=90.91  E-value=1.1  Score=44.42  Aligned_cols=140  Identities=15%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCC-------CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCC
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLE-------PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPD  319 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~-------~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp  319 (535)
                      .+.|.+||..-++          ..+..       -+++|++|+|.|= ..||.-+|.+|.++||.|. ++|++|..+-.
T Consensus        33 ~PCTp~avi~lL~----------~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~  101 (197)
T cd01079          33 LPCTPLAIVKILE----------FLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFT  101 (197)
T ss_pred             cCCCHHHHHHHHH----------HhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccccc
Confidence            5899999987766          23331       1589999999995 5689999999999999988 67777766654


Q ss_pred             CCCCCCHHHHHHHHHHcCCcccCCCCcccCCCC--ccccceEEeeccc-ccc-ccccccccccceEEEecCCCCCCHHHH
Q psy1913         320 KGTEINYKDLHTYKITKGTIKGYPGTKSAPTDI--MFDKVDILVPAAI-EKV-IRKSNADKVQAKIIVEAANGPLTPAAH  395 (535)
Q Consensus       320 ~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~el--l~~~~DILiPaA~-~~~-It~~na~~i~AkiIvEgAN~p~T~eA~  395 (535)
                      .+  -.   + ++...        .....++.+  +...+||+|-|.. .+. |+.+....= |-+|==|-|.-..   +
T Consensus       102 ~~--~~---~-~hs~t--------~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~G-avVIDVGi~~dvd---~  163 (197)
T cd01079         102 RG--ES---I-RHEKH--------HVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDG-AICINFASIKNFE---P  163 (197)
T ss_pred             cc--cc---c-ccccc--------cccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCC-cEEEEcCCCcCcc---H
Confidence            44  11   0 11000        000000012  2358899999987 555 676554421 2233233332111   2


Q ss_pred             HHHHhCCceeeccccccccCcchhhH
Q psy1913         396 AMLLKKNVLIIPDIFANAGGVTVSYF  421 (535)
Q Consensus       396 ~iL~~rGI~viPD~laNaGGVivSy~  421 (535)
                      .+ .++-=.+.|=    -|-+|++.+
T Consensus       164 ~v-~~~as~iTPv----VGpvTva~L  184 (197)
T cd01079         164 SV-KEKASIYVPS----IGKVTIAML  184 (197)
T ss_pred             hH-HhhcCEeCCC----cCHHHHHHH
Confidence            22 2332246662    677776654

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.90  E-value=0.86  Score=49.08  Aligned_cols=110  Identities=14%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCC----
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDI----  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~el----  352 (535)
                      .+..++++|.|+|.+|+.+++.|.+.|..|+.|.             -|.+.+.++.++...+.-+.+ ...+.+.    
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid-------------~~~~~~~~~~~~~~~~~~i~g-d~~~~~~L~~~  293 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIE-------------RDPERAEELAEELPNTLVLHG-DGTDQELLEEE  293 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEE-------------CCHHHHHHHHHHCCCCeEEEC-CCCCHHHHHhc
Confidence            4567899999999999999999999999998843             566766666654311111101 1111111    


Q ss_pred             ccccceEEeeccccc---ccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         353 MFDKVDILVPAAIEK---VIRKSNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       353 l~~~~DILiPaA~~~---~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      --.++|.+|-+.-..   .+....+..+. .++|+...    +++..++|+..|+-
T Consensus       294 ~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~  345 (453)
T PRK09496        294 GIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID  345 (453)
T ss_pred             CCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence            224788888665432   22222233332 36676653    34556778888874

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=90.84  E-value=1.2  Score=46.40  Aligned_cols=50  Identities=28%  Similarity=0.301  Sum_probs=41.9

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|-+|+...++          ..+.  ++.|++++|+|-+| ||+-++.+|...++.|..
T Consensus       135 ~~PCTp~gi~~ll~----------~~~i--~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtv  185 (283)
T COG0190         135 FLPCTPAGIMTLLE----------EYGI--DLRGKNVVVVGRSNIVGKPLALLLLNANATVTV  185 (283)
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEE
Confidence            35899999887666          4565  58999999999776 899999999999998875

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.81  E-value=0.92  Score=49.26  Aligned_cols=110  Identities=20%  Similarity=0.342  Sum_probs=69.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH------------------HHcCCcccC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK------------------ITKGTIKGY  342 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~------------------~~~g~v~~~  342 (535)
                      .+|+|.|+|-||.-+|-.++..|++|++             -|||...+....                  .+.|.+   
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG-------------~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~l---   73 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIG-------------VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKL---   73 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEe-------------EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCc---
Confidence            8999999999999999999999999999             445544444332                  222211   


Q ss_pred             CCCcccCC-CCccccceEEeeccccccccc--------cc-cccc------cceEEEecCCCC-CCHHHHH-HHHhCCce
Q psy1913         343 PGTKSAPT-DIMFDKVDILVPAAIEKVIRK--------SN-ADKV------QAKIIVEAANGP-LTPAAHA-MLLKKNVL  404 (535)
Q Consensus       343 ~~a~~i~~-ell~~~~DILiPaA~~~~It~--------~n-a~~i------~AkiIvEgAN~p-~T~eA~~-iL~~rGI~  404 (535)
                         +..+. +-+. +||++|-|-..-.-..        +| +..|      ..-+|.|..=-| +|.+.-. +|++++=+
T Consensus        74 ---raTtd~~~l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL  149 (436)
T COG0677          74 ---RATTDPEELK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL  149 (436)
T ss_pred             ---eEecChhhcc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence               11122 3444 9999998865332221        11 1112      147899999999 7877665 55554544


Q ss_pred             eec-ccc
Q psy1913         405 IIP-DIF  410 (535)
Q Consensus       405 viP-D~l  410 (535)
                      .+| ||.
T Consensus       150 ~~~~Df~  156 (436)
T COG0677         150 KFGEDFY  156 (436)
T ss_pred             cccceee
Confidence            444 553

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=90.76  E-value=0.33  Score=51.52  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .|+|+||+|+|+|+.|+..|+.|...|.+|++..+
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r   47 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR   47 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence            48999999999999999999999999999987543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.74  E-value=0.67  Score=49.91  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-CCcccCC--CCccccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-GTKSAPT--DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-~a~~i~~--ell~~~~  357 (535)
                      ++|+|.|+|++|+.+++.|.+.|..|+.|.             -|.+.+....+..+ +.-+. .+.....  +.--.++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid-------------~~~~~~~~~~~~~~-~~~~~gd~~~~~~l~~~~~~~a   66 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVID-------------TDEERLRRLQDRLD-VRTVVGNGSSPDVLREAGAEDA   66 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEE-------------CCHHHHHHHHhhcC-EEEEEeCCCCHHHHHHcCCCcC
Confidence            479999999999999999999999998743             45565555544222 11110 1110000  1112478


Q ss_pred             eEEeeccccccccc---cccccc--cceEEEecCC
Q psy1913         358 DILVPAAIEKVIRK---SNADKV--QAKIIVEAAN  387 (535)
Q Consensus       358 DILiPaA~~~~It~---~na~~i--~AkiIvEgAN  387 (535)
                      |++|-|.....++.   ..+..+  ..++|+...+
T Consensus        67 ~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~  101 (453)
T PRK09496         67 DLLIAVTDSDETNMVACQIAKSLFGAPTTIARVRN  101 (453)
T ss_pred             CEEEEecCChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            88888876544443   233333  2356665543

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=90.73  E-value=0.87  Score=39.65  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=55.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      .+|+|.|+|+.|+.....+.+.  +.+|++|+|            .+.+...+..++.+       ...+++  ++++ .
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d------------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~   61 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD------------PDPERAEAFAEKYG-------IPVYTDLEELLADE   61 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC------------SSHHHHHHHHHHTT-------SEEESSHHHHHHHT
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe------------CCHHHHHHHHHHhc-------ccchhHHHHHHHhh
Confidence            3799999999999888777665  679999875            45666666665553       223444  5665 5


Q ss_pred             cceEEeeccccccccccccccc---cceEEEe
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV---QAKIIVE  384 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i---~AkiIvE  384 (535)
                      ++|+++-|+.... +.+-+...   ...+++|
T Consensus        62 ~~D~V~I~tp~~~-h~~~~~~~l~~g~~v~~E   92 (120)
T PF01408_consen   62 DVDAVIIATPPSS-HAEIAKKALEAGKHVLVE   92 (120)
T ss_dssp             TESEEEEESSGGG-HHHHHHHHHHTTSEEEEE
T ss_pred             cCCEEEEecCCcc-hHHHHHHHHHcCCEEEEE
Confidence            7999998886532 33332222   2366666

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>KOG2018|consensus

Probab=90.72  E-value=0.66  Score=48.97  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++.-|+|+|.|.||+|++..|.+.|++=+-|.|
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD  105 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD  105 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence            5688999999999999999999999986666555

>PRK04148 hypothetical protein; Provisional

Probab=90.69  E-value=0.44  Score=44.34  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=37.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      ++++|+++|.| -|..+|..|.+.|..|+|             .|++..++...++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~Via-------------IDi~~~aV~~a~~~   58 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIV-------------IDINEKAVEKAKKL   58 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHh
Confidence            67899999999 898999999999999999             88999987766554

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=90.64  E-value=0.64  Score=47.46  Aligned_cols=106  Identities=10%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      .||+|.|+|++|+..++.|.+. +..+++|++..     ..     .....+.   .+.     +...++.  ++ ..++
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-----~~-----~~~~~~~---~~~-----~~~~~~d~~~l-~~~~   62 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-----HS-----IDAVRRA---LGE-----AVRVVSSVDAL-PQRP   62 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-----CC-----HHHHhhh---hcc-----CCeeeCCHHHh-ccCC
Confidence            4899999999999999999875 78888887432     11     1111111   110     1222333  45 6779


Q ss_pred             eEEeeccccccccccccccc-c--ceEEEecC---CCC-CCHHHHHHHHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSNADKV-Q--AKIIVEAA---NGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i-~--AkiIvEgA---N~p-~T~eA~~iL~~rGI~vi  406 (535)
                      |+++.|+..... .+.+... +  ..+|++..   .-+ ..++..+..+++|+.+.
T Consensus        63 DvVve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~  117 (265)
T PRK13303         63 DLVVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH  117 (265)
T ss_pred             CEEEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence            999999986644 4444433 2  46666521   111 12233445667786543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=90.42  E-value=0.54  Score=49.64  Aligned_cols=48  Identities=23%  Similarity=0.151  Sum_probs=41.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      +....+|+|.|.|-||..+|+...-.|++|.-             -|+++++|..+...++
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vti-------------ld~n~~rl~~ldd~f~  212 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTI-------------LDLNIDRLRQLDDLFG  212 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEE-------------EecCHHHHhhhhHhhC
Confidence            34557899999999999999999999999987             5699999988877654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.37  E-value=0.59  Score=52.47  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      -+++|.|+|++|+.+|+.|.+.|..++.|             |-|.+.+.+.++. |.-.-+-++.  +++.|    -.+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvI-------------d~d~~~~~~~~~~-g~~~i~GD~~--~~~~L~~a~i~~  481 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVI-------------ETSRTRVDELRER-GIRAVLGNAA--NEEIMQLAHLDC  481 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEE-------------ECCHHHHHHHHHC-CCeEEEcCCC--CHHHHHhcCccc
Confidence            37899999999999999999999999883             3667777666543 2100010111  11222    247


Q ss_pred             ceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913         357 VDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       357 ~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~v  405 (535)
                      ||.++-+...+.-+.   ..+.+.  .+++|+=..    +++..+.|++-|+.+
T Consensus       482 a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~  531 (558)
T PRK10669        482 ARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQ  531 (558)
T ss_pred             cCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCE
Confidence            887766654332111   111111  346776543    467778888888654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.33  E-value=0.91  Score=49.03  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++|++|.|.|.|..|..+|++|++.|++|++ +|.
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~-~d~   36 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTV-NDG   36 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-EcC
Confidence            5789999999999999999999999999876 453

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=90.21  E-value=0.92  Score=48.41  Aligned_cols=83  Identities=24%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|..||..-++          ..|.  +++|++|+|.|= ..||.-+|.+|.++||.|.. +.+.        + -|
T Consensus       193 ~~PCTp~avi~LL~----------~~~i--~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTi-cHs~--------T-~n  250 (345)
T PLN02897        193 FVSCTPKGCVELLI----------RSGV--EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVST-VHAF--------T-KD  250 (345)
T ss_pred             CcCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccccHHHHHHHHHCCCEEEE-EcCC--------C-CC
Confidence            46899999876665          4565  489999999995 56899999999999998865 3221        0 11


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccc
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNAD  375 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~  375 (535)
                      +.                        -+...+||+|-|+. .+.|+.+...
T Consensus       251 l~------------------------~~~~~ADIvIsAvGkp~~v~~d~vk  277 (345)
T PLN02897        251 PE------------------------QITRKADIVIAAAGIPNLVRGSWLK  277 (345)
T ss_pred             HH------------------------HHHhhCCEEEEccCCcCccCHHHcC
Confidence            11                        12357899999887 6767765544

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.18  E-value=1.3  Score=48.98  Aligned_cols=31  Identities=19%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +.|++|+|.|+|..|..++++|+..|++|++
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~   40 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTV   40 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence            4689999999999999999999999999887

>PLN02306 hydroxypyruvate reductase

Probab=90.15  E-value=0.38  Score=52.02  Aligned_cols=114  Identities=18%  Similarity=0.245  Sum_probs=67.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-Cc---ccCC-CCcccCC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TI---KGYP-GTKSAPT  350 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v---~~~~-~a~~i~~  350 (535)
                      +|.|+||.|.|||++|+.+|+.|. -.|++|++        ||+..  -  ..+.......+ .+   ..++ +.+....
T Consensus       162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~--------~d~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  229 (386)
T PLN02306        162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQ--S--TRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE--------ECCCC--c--hhhhhhhhhhcccccccccccccccccCC
Confidence            589999999999999999999985 78999988        33332  0  11111000111 00   0000 0111222


Q ss_pred             --CCccccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCc
Q psy1913         351 --DIMFDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNV  403 (535)
Q Consensus       351 --ell~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI  403 (535)
                        +++ ..|||++-++.     .+.|+.+....++ -.+++--|=|++ ..+ ..+.|++.-|
T Consensus       230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i  291 (386)
T PLN02306        230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM  291 (386)
T ss_pred             HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence              344 46899988755     3345555555554 468888899985 333 3356766545

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.13  E-value=3.1  Score=38.80  Aligned_cols=49  Identities=22%  Similarity=0.286  Sum_probs=39.8

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.|..|+...++          +.|+  +++|++|.|.| -..||.-+|.+|.++|+.|..
T Consensus         8 ~p~t~~a~~~ll~----------~~~~--~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~   57 (140)
T cd05212           8 VSPVAKAVKELLN----------KEGV--RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYS   57 (140)
T ss_pred             cccHHHHHHHHHH----------HcCC--CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence            4677777665554          4676  58999999999 567899999999999999887

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.07  E-value=0.24  Score=45.18  Aligned_cols=31  Identities=16%  Similarity=0.378  Sum_probs=26.1

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|.|.|.|.+|..+|+.|...|..=+.+.|.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~   31 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF   31 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence            5899999999999999999999865555543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.06  E-value=0.58  Score=53.50  Aligned_cols=111  Identities=18%  Similarity=0.204  Sum_probs=70.6

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~  355 (535)
                      ..+|+|.|||.+|+.+++.|.+.|.++++             -|.|.+.+.+.++. |.-.-|-+++.  .++|    -.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvv-------------ID~d~~~v~~~~~~-g~~v~~GDat~--~~~L~~agi~  463 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTV-------------LDHDPDHIETLRKF-GMKVFYGDATR--MDLLESAGAA  463 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEE-------------EECCHHHHHHHHhc-CCeEEEEeCCC--HHHHHhcCCC
Confidence            36899999999999999999999999988             44777777766543 32111111111  1333    24


Q ss_pred             cceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCceee-cccc
Q psy1913         356 KVDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLII-PDIF  410 (535)
Q Consensus       356 ~~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~vi-PD~l  410 (535)
                      ++|.+|-|.-....|.   ..+.+.  ..++|+=+.    +++....|++.|+..+ |...
T Consensus       464 ~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~  520 (621)
T PRK03562        464 KAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETF  520 (621)
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhH
Confidence            7898888875533333   233333  346776443    3566778999998754 4433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=89.96  E-value=2.5  Score=44.23  Aligned_cols=113  Identities=9%  Similarity=0.099  Sum_probs=69.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ..++|.|.|.|..|+..++.+.. .+. +|.. .+            -+.+...++.++.... ++ .....+.  +.+ 
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V-~~------------Rs~~~a~~~a~~~~~~-g~-~~~~~~~~~~av-  187 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRV-WG------------RDPAKAEALAAELRAQ-GF-DAEVVTDLEAAV-  187 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEE-Ec------------CCHHHHHHHHHHHHhc-CC-ceEEeCCHHHHH-
Confidence            57899999999999999987665 554 4443 22            4455655555542210 11 1222222  233 


Q ss_pred             ccceEEeeccccc--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913         355 DKVDILVPAAIEK--VIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       355 ~~~DILiPaA~~~--~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD  408 (535)
                      .+|||++-|+...  +++.+.... .+-|.+-|++.|...|.+.-+.+++..|+=|
T Consensus       188 ~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~vD~  242 (314)
T PRK06141        188 RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYVDT  242 (314)
T ss_pred             hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence            4899998776532  333333221 3467788899998888887777888766643

>PRK07877 hypothetical protein; Provisional

Probab=89.92  E-value=0.17  Score=58.70  Aligned_cols=129  Identities=13%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc--CCCCcccCCCCcc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG--YPGTKSAPTDIMF  354 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~--~~~a~~i~~ell~  354 (535)
                      |+.++|+|.|.| ||+++|.+|...|. -=+.+.|.       |=  +++..|-+..   -+..+  -++++.....+..
T Consensus       105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~-------D~--ve~sNLnRq~---~~~~diG~~Kv~~a~~~l~~  171 (722)
T PRK07877        105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF-------DT--LELSNLNRVP---AGVFDLGVNKAVVAARRIAE  171 (722)
T ss_pred             HhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC-------CE--Eccccccccc---CChhhcccHHHHHHHHHHHH
Confidence            467899999999 99999999999994 33444443       22  4444443311   01111  1111111112333


Q ss_pred             ccceEEeeccccccccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCceeeccccccccCcc-hhhHh
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGGVT-VSYFE  422 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T-~eA~~iL~~rGI~viPD~laNaGGVi-vSy~E  422 (535)
                      .+.+|=|-+- ..-|+++|++.+  .+-+|+++.-+.-+ -...+.-.++||.+|  +-+.++|.+ +..|.
T Consensus       172 inp~i~v~~~-~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i--~~~~~~g~~~~e~~~  240 (722)
T PRK07877        172 LDPYLPVEVF-TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVL--MATSDRGLLDVERFD  240 (722)
T ss_pred             HCCCCEEEEE-eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE--EEcCCCCCcCcceee
Confidence            4444444333 344677888876  57899999887633 234455678899887  445556665 34444

>PRK14852 hypothetical protein; Provisional

Probab=89.92  E-value=0.21  Score=59.57  Aligned_cols=118  Identities=11%  Similarity=0.076  Sum_probs=69.5

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCCCCcccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      |+..+|+|.|.|-||..+|+.|...|..=+.|.|-+       =  ++...|-+-.- ....+ +-++++.....+...+
T Consensus       330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D-------~--Ve~SNLNRQ~l~~~~dI-G~~Kaevaa~~l~~IN  399 (989)
T PRK14852        330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD-------A--YSPVNLNRQYGASIASF-GRGKLDVMTERALSVN  399 (989)
T ss_pred             HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC-------E--ecccccccccCCChhhC-CChHHHHHHHHHHHHC
Confidence            678999999999999999999999998777777643       1  33333222100 00000 1111111111233344


Q ss_pred             ceEEeeccccccccccccccc--cceEEEecCCCCCCHH---HHHHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTPA---AHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~e---A~~iL~~rGI~vi  406 (535)
                      .+|=|-+--+ -|+.+|++.+  .+-+|+++..++.+..   ......++||.++
T Consensus       400 P~v~I~~~~~-~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I  453 (989)
T PRK14852        400 PFLDIRSFPE-GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI  453 (989)
T ss_pred             CCCeEEEEec-CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence            4444444333 3577888876  5789999998875532   2233478888775

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.91  E-value=0.58  Score=50.06  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |++++|+|.|.|-+|..+++.|...|..=+.+.|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            568899999999999999999999998777777654

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=89.81  E-value=0.79  Score=50.70  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=38.8

Q ss_pred             HHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC-----CCeEEEEecCCc
Q psy1913         259 AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG-----RAKCLAIVEHDT  314 (535)
Q Consensus       259 i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~-----GakVVaVsD~~G  314 (535)
                      ++.+++. ++....+-....+.++|+|=|||-+|+.++|.+.+.     +.+||||-+..+
T Consensus       107 ~~~~~~~-~l~~~~~~~~~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n  166 (477)
T PRK08289        107 VEAFVAE-ELADAVGGADDIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG  166 (477)
T ss_pred             HHHHHHH-HHhhhhcCCCCCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence            3444432 333344433345678999999999999999998864     579999976544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=89.62  E-value=3.3  Score=46.01  Aligned_cols=31  Identities=16%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCL  307 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVV  307 (535)
                      .|+|++|+|.|+|..|..-|.-|...|..|+
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            3789999999999999988888888898777

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.62  E-value=3.2  Score=45.58  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~  312 (535)
                      .+|+|-|||..|+.++|.+.+ .+.+||+|-|.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence            499999999999999999875 68999997653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.60  E-value=0.77  Score=46.98  Aligned_cols=28  Identities=21%  Similarity=0.063  Sum_probs=26.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.+|..+|..|++.|..|+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l   31 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTI   31 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            4899999999999999999999999887

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=89.59  E-value=8.1  Score=40.11  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++          ..+.  +++++++.|.|.|..++.++-.|...|++-|.|.+++     ++    ..++..
T Consensus       107 D~~Gf~~~l~----------~~~~--~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt-----~~----~~~ka~  165 (288)
T PRK12749        107 DGTGHIRAIK----------ESGF--DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----DE----FFDKAL  165 (288)
T ss_pred             CHHHHHHHHH----------hcCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-----cc----HHHHHH
Confidence            4677777776          2343  4689999999999999999999999998777766653     10    123333


Q ss_pred             HHHHHcCCcccCCC-CcccCC---C-Cc--cccceEEeeccccccccccc------ccccc-ceEEEecCCCC-CCHHHH
Q psy1913         331 TYKITKGTIKGYPG-TKSAPT---D-IM--FDKVDILVPAAIEKVIRKSN------ADKVQ-AKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       331 ~~~~~~g~v~~~~~-a~~i~~---e-ll--~~~~DILiPaA~~~~It~~n------a~~i~-AkiIvEgAN~p-~T~eA~  395 (535)
                      +..++.+..  +.. ....+.   + +.  ..++||+|-|+.-+.-...+      ...++ ..+|.+..-+| -|+=..
T Consensus       166 ~la~~~~~~--~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~  243 (288)
T PRK12749        166 AFAQRVNEN--TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQ  243 (288)
T ss_pred             HHHHHhhhc--cCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHH
Confidence            433332110  000 011111   1 11  13689999998754432111      11222 35777888777 465443


Q ss_pred             HHHHhCCceeec
Q psy1913         396 AMLLKKNVLIIP  407 (535)
Q Consensus       396 ~iL~~rGI~viP  407 (535)
                      . -+++|..+++
T Consensus       244 ~-A~~~G~~~~~  254 (288)
T PRK12749        244 Q-AQQAGCKTID  254 (288)
T ss_pred             H-HHHCCCeEEC
Confidence            3 3567766553

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.58  E-value=2.7  Score=44.84  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~  313 (535)
                      .+|+|.|||.+|+..++.+.+ .+..+|+|.|..
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~   39 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF   39 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence            699999999999999999876 479999988743

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.58  E-value=0.78  Score=48.89  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |++++|.|.|.|.+|..+++.|...|..=+.|.|.+
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            467899999999999999999999998778888764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=89.42  E-value=0.74  Score=51.44  Aligned_cols=38  Identities=24%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      ++|+|+|.|..|..+|..|+..|..|+.             .|.+.+.+.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l-------------~d~~~e~l~~   43 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLL-------------YDIRAEALAR   43 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHH
Confidence            5899999999999999999999999987             4566666654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.34  E-value=0.81  Score=47.16  Aligned_cols=38  Identities=21%  Similarity=0.151  Sum_probs=32.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      ++|+|.|.|..|...|..|+..|..|+.             .|.+.+.+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l-------------~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLV-------------FETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHH
Confidence            3899999999999999999999999987             5566666655

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=89.27  E-value=0.91  Score=50.41  Aligned_cols=28  Identities=18%  Similarity=0.000  Sum_probs=26.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|+|.|++|...|..|+..|..|+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v   32 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAV   32 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            4899999999999999999999999876

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=89.20  E-value=3.2  Score=44.02  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             EEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      ||+|=|||-+|+.+.|.+.+.   ..+||+|-|.
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~   34 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL   34 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence            589999999999999998765   5899998873

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK08507 prephenate dehydrogenase; Validated

Probab=89.14  E-value=0.82  Score=46.44  Aligned_cols=81  Identities=16%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             EEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      +|+|.|+|++|+.+|+.|.+.|.  .|++             .|.+.+.+.... +.|.+..     ..+. ++.  +||
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-------------~d~~~~~~~~~~-~~g~~~~-----~~~~~~~~--~aD   60 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-------------YDHNELHLKKAL-ELGLVDE-----IVSFEELK--KCD   60 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEE-------------EcCCHHHHHHHH-HCCCCcc-----cCCHHHHh--cCC
Confidence            79999999999999999999885  5665             335555554443 3332111     0122 433  499


Q ss_pred             EEeeccccccccc---ccccccc-ceEEEe
Q psy1913         359 ILVPAAIEKVIRK---SNADKVQ-AKIIVE  384 (535)
Q Consensus       359 ILiPaA~~~~It~---~na~~i~-AkiIvE  384 (535)
                      ++|-|.....+..   +-++ ++ -.+|+.
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~d   89 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTIID   89 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEEE
Confidence            9999987665443   2222 33 246666

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=89.03  E-value=1.7  Score=38.90  Aligned_cols=98  Identities=21%  Similarity=0.335  Sum_probs=55.4

Q ss_pred             cEEEEEc----cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQG----FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQG----fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++|||.|    -++.|+.+.+.|.+.|++|+.|        ||.+               +.+.+   ...++.  ++ -
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~V--------np~~---------------~~i~G---~~~y~sl~e~-p   53 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPV--------NPKG---------------GEILG---IKCYPSLAEI-P   53 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEE--------STTC---------------SEETT---EE-BSSGGGC-S
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEE--------CCCc---------------eEECc---EEeeccccCC-C
Confidence            5899999    6999999999999999999985        4554               11111   112222  21 3


Q ss_pred             ccceEEeeccccccc----cccccccccceEEEecCCCCCCHHHHHHHHhCCceee-cc
Q psy1913         355 DKVDILVPAAIEKVI----RKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII-PD  408 (535)
Q Consensus       355 ~~~DILiPaA~~~~I----t~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi-PD  408 (535)
                      .++|+.+-|.....+    .+--+..+++=++.-|   -..+++.+.+++.|+.++ |.
T Consensus        54 ~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~  109 (116)
T PF13380_consen   54 EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN  109 (116)
T ss_dssp             ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred             CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence            577777776543322    2222222333333333   456889999999999997 64

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=88.76  E-value=0.62  Score=48.95  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=29.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      |+|++|+|.|+|+.|..+|+.|.+.|.+|+...
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEE
Confidence            478999999999999999999999998876533

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=88.65  E-value=5.1  Score=37.65  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+++.+.+ .+..+++|.|.
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            379999999999999998875 68999998763

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PLN02712 arogenate dehydrogenase

Probab=88.63  E-value=0.6  Score=53.89  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=28.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +.++|+|+|+|++|+.+|+.|.+.|.+|+++
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~   81 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAH   81 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence            4579999999999999999999999998873

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.43  E-value=0.87  Score=45.72  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC---CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR---AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ++|+|+|+|++|..+++.|.+.|   ..|.. .       +     -+.+.+.++.+..|       ....+.  +++ .
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v-~-------~-----r~~~~~~~~~~~~g-------~~~~~~~~~~~-~   61 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIV-S-------D-----PSPEKRAALAEEYG-------VRAATDNQEAA-Q   61 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEE-E-------c-----CCHHHHHHHHHhcC-------CeecCChHHHH-h
Confidence            47999999999999999999988   44443 2       2     33345544444322       111122  343 4


Q ss_pred             cceEEeecccccccccccccccc---ceEEEecCCCCCCHHHHHHHHhCC---ceeecc
Q psy1913         356 KVDILVPAAIEKVIRKSNADKVQ---AKIIVEAANGPLTPAAHAMLLKKN---VLIIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i~---AkiIvEgAN~p~T~eA~~iL~~rG---I~viPD  408 (535)
                      +||+++.|.....+.+ -...++   -++|+--.|+-......+.+ .++   +.++|-
T Consensus        62 ~advVil~v~~~~~~~-v~~~l~~~~~~~vvs~~~gi~~~~l~~~~-~~~~~iv~~~P~  118 (267)
T PRK11880         62 EADVVVLAVKPQVMEE-VLSELKGQLDKLVVSIAAGVTLARLERLL-GADLPVVRAMPN  118 (267)
T ss_pred             cCCEEEEEcCHHHHHH-HHHHHHhhcCCEEEEecCCCCHHHHHHhc-CCCCcEEEecCC
Confidence            8999999986554332 222222   25777777765333333333 233   445553

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.30  E-value=0.85  Score=46.48  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=57.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      +.++|.|+|.|++|..+++.|.+.|    .+|+. +|+       +    +.+.+..+....|       .+..+.  ++
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v-~~r-------~----~~~~~~~l~~~~g-------~~~~~~~~e~   62 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITV-SNR-------S----NETRLQELHQKYG-------VKGTHNKKEL   62 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEE-ECC-------C----CHHHHHHHHHhcC-------ceEeCCHHHH
Confidence            4579999999999999999999988    44443 222       1    1233444444432       121222  33


Q ss_pred             ccccceEEeecccccccccc---cccccc-ceEEEecCCCCCCHHHHHHH
Q psy1913         353 MFDKVDILVPAAIEKVIRKS---NADKVQ-AKIIVEAANGPLTPAAHAML  398 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~---na~~i~-AkiIvEgAN~p~T~eA~~iL  398 (535)
                      . .+|||+|-|.....+.+-   ..+.++ -++|+.-+++-......+.+
T Consensus        63 ~-~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~  111 (279)
T PRK07679         63 L-TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL  111 (279)
T ss_pred             H-hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence            2 478999988776554331   112232 25788877665333344443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.24  E-value=1.1  Score=47.34  Aligned_cols=28  Identities=21%  Similarity=0.145  Sum_probs=26.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.+|...|..++..|..|+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l   35 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVA   35 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            6899999999999999999999999987

>KOG0023|consensus

Probab=88.18  E-value=3.3  Score=44.05  Aligned_cols=131  Identities=14%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCc---eEeCCCCCC-----C-CHHHHHHHHHHcCC-
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT---AIVPDKGTE-----I-NYKDLHTYKITKGT-  338 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G---~iynp~G~d-----L-Di~~L~~~~~~~g~-  338 (535)
                      |++.|+.   .|++|.|.|.|-+|.-+.++-...|++|++|+-++.   -..+.=|+|     . |.+.+.++.+...- 
T Consensus       174 Lk~~g~~---pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~  250 (360)
T KOG0023|consen  174 LKRSGLG---PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGG  250 (360)
T ss_pred             hHHcCCC---CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCc
Confidence            4456775   599999999999999999998899999999997630   111111111     2 55555555544321 


Q ss_pred             ---cccCCCCcccCC--CCccccceEEeeccccccccccccccc-cceEEEecCCCC--CCHHHHHHHHhCCc
Q psy1913         339 ---IKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKV-QAKIIVEAANGP--LTPAAHAMLLKKNV  403 (535)
Q Consensus       339 ---v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI  403 (535)
                         +.+| ....+++  +++...--+..-.+.++-+.-+..+.+ +.+.|++..=|-  -|.|+-+...+++|
T Consensus       251 ~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~i  322 (360)
T KOG0023|consen  251 IDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLI  322 (360)
T ss_pred             ceeeeec-cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCC
Confidence               1122 1112222  445555555555555655555555444 677888877666  47788776655544

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.16  E-value=1.3  Score=41.35  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc-----cCCCC--cc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS-----APTDI--MF  354 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~-----i~~el--l~  354 (535)
                      +|+|.|.||.|..+|..|.+.|..|.-        |.     .|.+.+..+.+.+.....+++.+.     ++.++  .-
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l--------~~-----~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~   67 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTL--------WG-----RDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL   67 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEE--------ET-----SCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEE--------Ee-----ccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh
Confidence            589999999999999999999987765        33     455666666665543333444221     11122  12


Q ss_pred             ccceEEeeccccccccccccccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV  377 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i  377 (535)
                      .++|+++-|.....+ .+.++++
T Consensus        68 ~~ad~IiiavPs~~~-~~~~~~l   89 (157)
T PF01210_consen   68 EDADIIIIAVPSQAH-REVLEQL   89 (157)
T ss_dssp             TT-SEEEE-S-GGGH-HHHHHHH
T ss_pred             CcccEEEecccHHHH-HHHHHHH
Confidence            478888877655443 3444444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.08  E-value=2  Score=44.79  Aligned_cols=49  Identities=14%  Similarity=0.120  Sum_probs=39.8

Q ss_pred             CCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHC----CCeEEE
Q psy1913         248 ESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRG----RAKCLA  308 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~----GakVVa  308 (535)
                      .+.|..||...++          ..|+  +++|++|+|.|= ..||+-+|.+|.++    +|.|+.
T Consensus       133 ~PcTp~avi~lL~----------~~~i--~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtv  186 (287)
T PRK14181        133 IPCTPAGIIELLK----------YYEI--PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTL  186 (287)
T ss_pred             CCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEE
Confidence            5889999876665          4566  489999999995 56899999999998    677663

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.06  E-value=1.2  Score=44.88  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=59.7

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeE--EEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKC--LAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakV--VaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      +|.|.|+|++|+.+++.|.+.|..+  +.|.       |     -+.+.+.++.+..+      +.+..+.  ++. .+|
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~-------~-----r~~~~~~~l~~~~~------~~~~~~~~~~~~-~~a   62 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVS-------P-----RNAQIAARLAERFP------KVRIAKDNQAVV-DRS   62 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEE-------C-----CCHHHHHHHHHHcC------CceEeCCHHHHH-HhC
Confidence            7999999999999999999888543  2333       2     23455544444331      2222222  343 479


Q ss_pred             eEEeeccccccccccccccc---cceEEEecCCCCCCH-HHHHHHHh--CCceeecc
Q psy1913         358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTP-AAHAMLLK--KNVLIIPD  408 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~-eA~~iL~~--rGI~viPD  408 (535)
                      ||++-|.....+.+ -+..+   +-++|+.-+ ++++. +..+.+..  +-+.++|-
T Consensus        63 DvVilav~p~~~~~-vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~  117 (258)
T PRK06476         63 DVVFLAVRPQIAEE-VLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPL  117 (258)
T ss_pred             CEEEEEeCHHHHHH-HHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCC
Confidence            99999987544322 11122   235666544 55554 44444433  23445564

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.04  E-value=2.1  Score=43.40  Aligned_cols=97  Identities=11%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cc-c-CC-CCcccCC-CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IK-G-YP-GTKSAPT-DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~-~-~~-~a~~i~~-ell~~  355 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+.-             +.+.+....+ .|. +. + +. .....+. +-. .
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r-------------~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~   65 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVAR-------------RGAHLDALNE-NGLRLEDGEITVPVLAADDPAEL-G   65 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC-------------ChHHHHHHHH-cCCcccCCceeecccCCCChhHc-C
Confidence            3799999999999999999999998877541             1223333222 221 10 0 00 0011122 112 6


Q ss_pred             cceEEeeccccccccccccccc----cc-eEEEecCCCCCCHH
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV----QA-KIIVEAANGPLTPA  393 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i----~A-kiIvEgAN~p~T~e  393 (535)
                      ++|+++-|.....+. +-+..+    .. ..|+-..||.-+.+
T Consensus        66 ~~d~vila~k~~~~~-~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         66 PQDLVILAVKAYQLP-AALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             CCCEEEEecccccHH-HHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            899999997755442 223333    22 46778899875443

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=87.85  E-value=1.1  Score=46.14  Aligned_cols=114  Identities=15%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++|.+.|+||+|+.++.-|.+.|    ..|+.             ++-+.+.+.+..++.|..       ..++ .-+..
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v-------------~~~~~e~~~~l~~~~g~~-------~~~~~~~~~~   61 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIV-------------TNRSEEKRAALAAEYGVV-------TTTDNQEAVE   61 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEE-------------eCCCHHHHHHHHHHcCCc-------ccCcHHHHHh
Confidence            47999999999999999999999    35555             445566666666665422       1223 34556


Q ss_pred             cceEEeeccccccccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCceeeccccccccC
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV----QAKIIVEAANGPLTPAAHAMLL-KKNVLIIPDIFANAGG  415 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~p~T~eA~~iL~-~rGI~viPD~laNaGG  415 (535)
                      ++|+++.|--+..+-+ ...++    +-++|+--|=|-....-.+.|- .+=+.++|-.-+-.|-
T Consensus        62 ~advv~LavKPq~~~~-vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~  125 (266)
T COG0345          62 EADVVFLAVKPQDLEE-VLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA  125 (266)
T ss_pred             hCCEEEEEeChHhHHH-HHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence            8999999987644432 22233    4577777777666666666664 3346788988766653

>KOG0022|consensus

Probab=87.82  E-value=0.89  Score=48.11  Aligned_cols=97  Identities=23%  Similarity=0.240  Sum_probs=61.0

Q ss_pred             cCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceE
Q psy1913         238 PLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAI  316 (535)
Q Consensus       238 P~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~i  316 (535)
                      |++.=-..|=.-.||||.+.-+-            ...   +|.+|||-|+|.||..++.-....|| ||++        
T Consensus       166 Pl~kvcLLgCGvsTG~GAa~~~A------------kv~---~GstvAVfGLG~VGLav~~Gaka~GAsrIIg--------  222 (375)
T KOG0022|consen  166 PLEKVCLLGCGVSTGYGAAWNTA------------KVE---PGSTVAVFGLGGVGLAVAMGAKAAGASRIIG--------  222 (375)
T ss_pred             ChhheeEeeccccccchhhhhhc------------ccC---CCCEEEEEecchHHHHHHHhHHhcCcccEEE--------
Confidence            44333333445678998643222            233   58999999999999999998888897 9999        


Q ss_pred             eCCCCCCCCHHHHHHHHHHcCCcccCCCC----cccCC---CCccccceEEeecc
Q psy1913         317 VPDKGTEINYKDLHTYKITKGTIKGYPGT----KSAPT---DIMFDKVDILVPAA  364 (535)
Q Consensus       317 ynp~G~dLDi~~L~~~~~~~g~v~~~~~a----~~i~~---ell~~~~DILiPaA  364 (535)
                           -|++.++....++ .| ...|-..    .++..   |+-...+|.-+.|.
T Consensus       223 -----vDiN~~Kf~~ak~-fG-aTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~  270 (375)
T KOG0022|consen  223 -----VDINPDKFEKAKE-FG-ATEFINPKDLKKPIQEVIIEMTDGGVDYSFECI  270 (375)
T ss_pred             -----EecCHHHHHHHHh-cC-cceecChhhccccHHHHHHHHhcCCceEEEEec
Confidence                 5588887765543 33 1111111    11221   34456778888876

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=87.63  E-value=1.1  Score=54.32  Aligned_cols=120  Identities=12%  Similarity=0.162  Sum_probs=73.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC-CCe------------EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG-RAK------------CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT  345 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~-Gak------------VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a  345 (535)
                      +.++|+|.|.|.||+..|+.|++. ++.            +|+|+|            .+.+.+.+..+....+   ...
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD------------~~~~~a~~la~~~~~~---~~v  632 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS------------LYLKDAKETVEGIENA---EAV  632 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC------------CCHHHHHHHHHhcCCC---ceE
Confidence            467999999999999999999875 334            455544            6666666555432110   001


Q ss_pred             cc-cCC--CCcc--ccceEEeeccccccccccccc---cccceEEEecCCCCCCHHHHHHHHhCCceeecccccccc
Q psy1913         346 KS-APT--DIMF--DKVDILVPAAIEKVIRKSNAD---KVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAG  414 (535)
Q Consensus       346 ~~-i~~--ell~--~~~DILiPaA~~~~It~~na~---~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaG  414 (535)
                      .. +++  ++..  .++|+.|-|+.. ..+.+-|.   +-+..++++.-..+.+.+.++.-+++|+.++|++-.+-|
T Consensus       633 ~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPG  708 (1042)
T PLN02819        633 QLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPG  708 (1042)
T ss_pred             EeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHH
Confidence            11 233  3443  479999988865 34544433   234578888633233334446677899999988764443

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=87.52  E-value=4.1  Score=44.36  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=27.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|-|||-+|+.+.+.|.+.   ...|++|-|.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~   95 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT   95 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence            5999999999999999999876   4699998764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=87.43  E-value=1.3  Score=45.56  Aligned_cols=108  Identities=14%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC------CCcccCC-CCc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP------GTKSAPT-DIM  353 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~------~a~~i~~-ell  353 (535)
                      ++|+|.|.|++|..+|..|++.|..|..+             +.+.+.+.+..+........+      +....+. +-.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~-------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLW-------------ARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEA   68 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEE-------------ECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHH
Confidence            37999999999999999999999987652             233444444443211111011      1111222 112


Q ss_pred             cccceEEeeccccccccc---ccccccc-ceEEEecCCCCC---CHHHHHHHHhC
Q psy1913         354 FDKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPL---TPAAHAMLLKK  401 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~---T~eA~~iL~~r  401 (535)
                      -.+||++|-|.....+..   +-.+.+. -++|+.-.|+-.   +.+..+.|++.
T Consensus        69 ~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~  123 (325)
T PRK00094         69 LADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEE  123 (325)
T ss_pred             HhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHH
Confidence            248999999987643221   1112222 257777776642   23334556554

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=87.25  E-value=0.86  Score=47.77  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA  304 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga  304 (535)
                      .+++|+|.|.|+||+.+|..|...|.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~   30 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGI   30 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC
Confidence            57899999999999999999998886

>PRK05717 oxidoreductase; Validated

Probab=87.24  E-value=1.6  Score=42.97  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         275 EPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       275 ~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++|++++|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~   40 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA   40 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence            3568899999999 4999999999999999999884

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=87.23  E-value=0.67  Score=44.59  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      |++++|+|.|||+-|..-|.-|.+.|..|+.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~V   32 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIV   32 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            4789999999999999999999999998875

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=87.19  E-value=5.4  Score=42.38  Aligned_cols=92  Identities=18%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-c-------cc-CCCC-cccC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-I-------KG-YPGT-KSAP  349 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v-------~~-~~~a-~~i~  349 (535)
                      .+|+|.|||.+|+.+++.+.+ .+..|++|+|.+            .+......+..|- +       .. |.+. -.+.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~------------~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~   69 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK------------PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVA   69 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC------------hHHHHHHHHhcCCCccccCccccccccCCceEEc
Confidence            489999999999999999875 589999998753            1111111121220 0       00 1111 1122


Q ss_pred             -C--CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913         350 -T--DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA  386 (535)
Q Consensus       350 -~--ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA  386 (535)
                       .  +++ .++|+++-|+. ...+.+++...   .+++|.-+.
T Consensus        70 ~~~~el~-~~vDVVIdaT~-~~~~~e~a~~~~~aGk~VI~~~~  110 (341)
T PRK04207         70 GTIEDLL-EKADIVVDATP-GGVGAKNKELYEKAGVKAIFQGG  110 (341)
T ss_pred             CChhHhh-ccCCEEEECCC-chhhHHHHHHHHHCCCEEEEcCC
Confidence             1  344 47999999984 44677776655   367777764

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.18  E-value=1.1  Score=44.46  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~   36 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIV   36 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            367899999995 899999999999999998873

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=87.12  E-value=1.4  Score=47.47  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=31.5

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+..+|.|.|.|-+|..+|+.|...|..=+.|.|.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            356899999999999999999999998777777754

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=87.02  E-value=1.6  Score=43.57  Aligned_cols=91  Identities=19%  Similarity=0.195  Sum_probs=56.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDIL  360 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DIL  360 (535)
                      ++++|.|.||+|..+|+.|...|..|+-.+-            =+++++....+..+..     .+..+++--...|||.
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~------------r~~~~~~a~a~~l~~~-----i~~~~~~dA~~~aDVV   64 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSS------------RGPKALAAAAAALGPL-----ITGGSNEDAAALADVV   64 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecC------------CChhHHHHHHHhhccc-----cccCChHHHHhcCCEE
Confidence            5899999999999999999999998876431            1244555555444321     1111111112469999


Q ss_pred             eeccccccccc---cccccccceEEEecCCC
Q psy1913         361 VPAAIEKVIRK---SNADKVQAKIIVEAANG  388 (535)
Q Consensus       361 iPaA~~~~It~---~na~~i~AkiIvEgAN~  388 (535)
                      +.+-.-..+.+   +-.+.+.=|||+...|.
T Consensus        65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp   95 (211)
T COG2085          65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP   95 (211)
T ss_pred             EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence            98876333322   22223345999998885

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=86.99  E-value=1.7  Score=45.18  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-CcccCCCCc------c--cC-C
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TIKGYPGTK------S--AP-T  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v~~~~~a~------~--i~-~  350 (535)
                      ++|+|.|.|.+|..+|..|.+.|..|+.+. .              ..-.+...+.| .+...++..      .  .+ .
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~-r--------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   67 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIG-R--------------ARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTD   67 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEe-c--------------HHHHHHHHhcCceeecCCCcceecccceeEeccC
Confidence            479999999999999999999999988743 1              11112222222 111111100      0  11 1


Q ss_pred             -CCccccceEEeecccccccccccccccc-----ceEEEecCCCCCC-HHHHHHHHh
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANGPLT-PAAHAMLLK  400 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~p~T-~eA~~iL~~  400 (535)
                       +. ..+||+++-|.....+ .+-+..+.     -.+|+.-.|+..+ ....+.|.+
T Consensus        68 ~~~-~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~  122 (341)
T PRK08229         68 PAA-LATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG  122 (341)
T ss_pred             hhh-ccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence             22 2489999998764443 23333331     2567788898865 445555544

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=86.96  E-value=5.6  Score=42.34  Aligned_cols=87  Identities=21%  Similarity=0.247  Sum_probs=52.3

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCC-HHHHHHHHHHcCCccc----------CCCCc--
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEIN-YKDLHTYKITKGTIKG----------YPGTK--  346 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLD-i~~L~~~~~~~g~v~~----------~~~a~--  346 (535)
                      .||+|=|||-+|+.+.|.+.+ ....||||-|.         .|++ ..-|++|=.-+|.+.+          |.+.+  
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~   73 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR   73 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence            489999999999999999775 46899999774         1121 2334443333343211          11111  


Q ss_pred             cc---CC---CCccccceEEeeccccccccccccccc
Q psy1913         347 SA---PT---DIMFDKVDILVPAAIEKVIRKSNADKV  377 (535)
Q Consensus       347 ~i---~~---ell~~~~DILiPaA~~~~It~~na~~i  377 (535)
                      ..   ++   ++-+..+|+.+.|+.. ..+.+.|...
T Consensus        74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~h  109 (331)
T PRK15425         74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKH  109 (331)
T ss_pred             EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHH
Confidence            11   12   2225689999999954 3666666543

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=86.86  E-value=5.7  Score=42.50  Aligned_cols=94  Identities=21%  Similarity=0.176  Sum_probs=55.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCccc---CCC------Ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKG---YPG------TKS  347 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~~---~~~------a~~  347 (535)
                      .||+|-|||-+|+.+.|.+.+. ...||+|-|.           .|++.   |++|=..+|.+.+   +.+      .+.
T Consensus         3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-----------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~   71 (343)
T PRK07729          3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-----------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKK   71 (343)
T ss_pred             eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-----------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEE
Confidence            4899999999999999997754 6899998763           23333   3333223343211   011      111


Q ss_pred             ---c---CC---CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913         348 ---A---PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA  386 (535)
Q Consensus       348 ---i---~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA  386 (535)
                         .   ++   ++-+.++|+.+.|+..- .+.+-+...   .||.|.=.|
T Consensus        72 I~v~~~~dp~~~~W~~~gvDiVle~tG~f-~s~~~a~~hl~aGak~V~iSa  121 (343)
T PRK07729         72 IRLLNNRDPKELPWTDLGIDIVIEATGKF-NSKEKAILHVEAGAKKVILTA  121 (343)
T ss_pred             EEEEEcCChhhCcccccCCCEEEEccchh-hhHhHHHHHHHcCCeEEEeCC
Confidence               1   12   22257899999998543 566655543   355555554

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.85  E-value=3.1  Score=45.53  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+++++|+|.|.|..|..+|+.|.+.|++|+.
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~   44 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGARVTV   44 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46789999999999999999999999999765

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=86.80  E-value=0.71  Score=41.82  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=29.6

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      .++|+|.|.|.+|..+|+.|...|..=+.|.|.+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4799999999999999999999999877777754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=86.76  E-value=0.97  Score=47.89  Aligned_cols=34  Identities=12%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHD  313 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~  313 (535)
                      ..||+|.|+||+|+..++.+.+. +..+|+|.|.+
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~   37 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR   37 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            47999999999999999999764 89999988764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=86.70  E-value=5.2  Score=42.74  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .||+|=|||-+|+.+.|.+.+.   ...||||-|.
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~   36 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT   36 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence            4899999999999999997754   5899998764

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=86.70  E-value=4.1  Score=43.47  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcCCccc---CC------CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKG---YP------GTKS  347 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g~v~~---~~------~a~~  347 (535)
                      .||+|-|||-+|+.+.|.+.+ ....||||-|..          .|++.   |++|=.-+|.+.+   +.      +.+.
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~----------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~   72 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF----------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKK   72 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC----------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeE
Confidence            589999999999999999775 468999987632          23333   3333222333211   11      1111


Q ss_pred             c------CC---CCccccceEEeeccccccccccccccc---cceEEEecC
Q psy1913         348 A------PT---DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAA  386 (535)
Q Consensus       348 i------~~---ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgA  386 (535)
                      |      ++   .+-+.++|+.+.|+..- .+.+.++..   .||.|.-.|
T Consensus        73 i~~~~~~dp~~lpW~~~gvDiVle~tG~~-~s~~~a~~~l~aGak~V~iSa  122 (337)
T PTZ00023         73 VHVFFEKDPAAIPWGKNGVDVVCESTGVF-LTKEKAQAHLKGGAKKVIMSA  122 (337)
T ss_pred             EEEEeCCChhhCCccccCCCEEEEecchh-cCHHHHHHHhhCCCEEEEeCC
Confidence            1      12   23367999999999643 666666544   366666665

>PRK06949 short chain dehydrogenase; Provisional

Probab=86.68  E-value=1.9  Score=42.14  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++++++|.|.|- |.+|+++|+.|.+.|++|++++
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~   40 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS   40 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            4578999999995 9999999999999999988743

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=86.51  E-value=1.5  Score=44.42  Aligned_cols=78  Identities=17%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      .+|.|+|+|..|..+++++.+-  .+++++|.|+            |.+...+.....+       ....+.  +++ .+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~------------~~ek~~~~~~~~~-------~~~~s~ide~~-~~   60 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDR------------DEEKAKELEASVG-------RRCVSDIDELI-AE   60 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecC------------CHHHHHHHHhhcC-------CCccccHHHHh-hc
Confidence            3689999999999999988753  6888887654            2344444333322       111233  555 78


Q ss_pred             ceEEeecccccccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQ  378 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~  378 (535)
                      .|+++.||-.+.+-+---+-++
T Consensus        61 ~DlvVEaAS~~Av~e~~~~~L~   82 (255)
T COG1712          61 VDLVVEAASPEAVREYVPKILK   82 (255)
T ss_pred             cceeeeeCCHHHHHHHhHHHHh
Confidence            9999999987776554333333

>PRK11579 putative oxidoreductase; Provisional

Probab=86.48  E-value=3.1  Score=43.67  Aligned_cols=32  Identities=13%  Similarity=0.058  Sum_probs=26.0

Q ss_pred             cEEEEEccccHHH-HHHHHHHH-CCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGF-HAARYFRR-GRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~-~~A~~L~e-~GakVVaVsD~  312 (535)
                      .+|+|+|+|.+|. +.+..+.. .+++|++|+|.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~   38 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS   38 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            6999999999997 45666655 58999999874

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=86.34  E-value=1.4  Score=43.35  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHH--HCCCeEEEEecCC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFR--RGRAKCLAIVEHD  313 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~--e~GakVVaVsD~~  313 (535)
                      +.+|+.   ...+|+|.|+|+.|..+++.+.  ..|++++++.|.+
T Consensus        77 ~~l~~~---~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         77 KILGLD---RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             HHhCCC---CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            356654   4679999999999999998743  5689999988753

>KOG0068|consensus

Probab=86.18  E-value=0.74  Score=49.05  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=30.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++.|||++|.|||.+|+.+|+.+.-.|.++|+
T Consensus       143 el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~  174 (406)
T KOG0068|consen  143 ELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG  174 (406)
T ss_pred             EEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence            47899999999999999999999999999998

>PRK07340 ornithine cyclodeaminase; Validated

Probab=86.02  E-value=11  Score=39.42  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=70.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ..+++.|.|.|..|++.++.+.. .+.+-|.|.+            .+.+...++.++.... ++ ... .+.  +.+ .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~------------r~~~~a~~~a~~~~~~-~~-~~~-~~~~~~av-~  187 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG------------RTAASAAAFCAHARAL-GP-TAE-PLDGEAIP-E  187 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc------------CCHHHHHHHHHHHHhc-CC-eeE-ECCHHHHh-h
Confidence            57899999999999999999975 6766555543            4455555555543221 11 111 222  344 4


Q ss_pred             cceEEeeccc--cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         356 KVDILVPAAI--EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       356 ~~DILiPaA~--~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      +|||+|-|+.  +..++.  .-+=.+-+++=|++.|-..|.+.-+..+--+|+
T Consensus       188 ~aDiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~~~~~a~v~v  238 (304)
T PRK07340        188 AVDLVVTATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPRTVRGSRLYV  238 (304)
T ss_pred             cCCEEEEccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHHHHhhCeEEE
Confidence            9999999977  445543  223347899999999977776654545543333

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=85.96  E-value=1.5  Score=45.33  Aligned_cols=69  Identities=13%  Similarity=0.158  Sum_probs=44.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      -.+|+|+|+|++|..+|+.|.+.|.  +|++             .|.+.+.+.... +.|...     ...+.  +.+ .
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~-------------~dr~~~~~~~a~-~~g~~~-----~~~~~~~~~~-~   65 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVG-------------ADRSAETRARAR-ELGLGD-----RVTTSAAEAV-K   65 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEE-------------EECCHHHHHHHH-hCCCCc-----eecCCHHHHh-c
Confidence            4689999999999999999999885  6665             224445554443 233111     11111  233 4


Q ss_pred             cceEEeecccccc
Q psy1913         356 KVDILVPAAIEKV  368 (535)
Q Consensus       356 ~~DILiPaA~~~~  368 (535)
                      +||++|-|+....
T Consensus        66 ~aDvViiavp~~~   78 (307)
T PRK07502         66 GADLVILCVPVGA   78 (307)
T ss_pred             CCCEEEECCCHHH
Confidence            7999999987654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=85.87  E-value=1.2  Score=41.19  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=23.5

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHCCC--eEEE
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRGRA--KCLA  308 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~Ga--kVVa  308 (535)
                      .+|+|.|. |+||+++|..|...+.  .++-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L   31 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVL   31 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEE
Confidence            47999999 9999999999998763  5554

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=85.86  E-value=1.5  Score=44.96  Aligned_cols=115  Identities=14%  Similarity=0.136  Sum_probs=68.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .+|.|.|+|++|..+++.|.+.|    .+|+++..+            +.+.+.......      ++.....+  ++ .
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~------------~~~~~~~l~~~~------~~~~~~~~~~e~-~   62 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS------------KNEHFNQLYDKY------PTVELADNEAEI-F   62 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC------------cHHHHHHHHHHc------CCeEEeCCHHHH-H
Confidence            37999999999999999999988    567664321            112233332222      11221122  33 3


Q ss_pred             ccceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh-CCceeecccccccc
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLK-KNVLIIPDIFANAG  414 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~-rGI~viPD~laNaG  414 (535)
                      .+||++|-|.....+.+   +-.+.+. -++|+--+||-...+..+.|-. +=|.++|-.-+-.|
T Consensus        63 ~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g  127 (277)
T PRK06928         63 TKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVG  127 (277)
T ss_pred             hhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHh
Confidence            48999998877554332   1112232 2478888998776777777643 22467776554433

>PRK08655 prephenate dehydrogenase; Provisional

Probab=85.75  E-value=1.4  Score=48.39  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=52.5

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      ++|+|.| +|.+|..+|+.|.+.|..|+++             |.+.+.+.+...+.|.       ...+. +-.-.+||
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~-------------~r~~~~~~~~a~~~gv-------~~~~~~~e~~~~aD   60 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVT-------------GRDPKKGKEVAKELGV-------EYANDNIDAAKDAD   60 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEE-------------ECChHHHHHHHHHcCC-------eeccCHHHHhccCC
Confidence            4799997 8999999999999999988762             2444554444444331       11112 11124789


Q ss_pred             EEeeccccccccc---ccccccc-ceEEEecCC
Q psy1913         359 ILVPAAIEKVIRK---SNADKVQ-AKIIVEAAN  387 (535)
Q Consensus       359 ILiPaA~~~~It~---~na~~i~-AkiIvEgAN  387 (535)
                      ++|-|.....+..   +-++.++ -.+|+.-++
T Consensus        61 vVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         61 IVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             EEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence            9988877554321   1222232 246666665

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=85.46  E-value=19  Score=37.18  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -++|+..+++          ..|..   .+++|.|.|.|-.++.++..|.+.|++-|.|.++            +.++..
T Consensus       106 D~~Gf~~~L~----------~~~~~---~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR------------~~~~a~  160 (272)
T PRK12550        106 DYIAIAKLLA----------SYQVP---PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR------------NEKTGK  160 (272)
T ss_pred             CHHHHHHHHH----------hcCCC---CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC------------CHHHHH
Confidence            4677777776          12432   3569999999999999999999999875555543            334444


Q ss_pred             HHHHHcCCcccCCCCcccCCCCccccceEEeeccccccccccc-------ccccc-ceEEEecCCCC-CCHHHHHHHHhC
Q psy1913         331 TYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSN-------ADKVQ-AKIIVEAANGP-LTPAAHAMLLKK  401 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~~n-------a~~i~-AkiIvEgAN~p-~T~eA~~iL~~r  401 (535)
                      +..+..+    +   . ...++....+||+|-|+.-+.....+       ...++ ..+|.+-.=+| .|+=... -+++
T Consensus       161 ~la~~~~----~---~-~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~-A~~~  231 (272)
T PRK12550        161 ALAELYG----Y---E-WRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRY-ARAR  231 (272)
T ss_pred             HHHHHhC----C---c-chhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHH-HHHC
Confidence            4443321    1   0 00112224589999998754432111       11122 35788888777 4655433 3677


Q ss_pred             Cceee
Q psy1913         402 NVLII  406 (535)
Q Consensus       402 GI~vi  406 (535)
                      |..++
T Consensus       232 G~~~i  236 (272)
T PRK12550        232 GKTVI  236 (272)
T ss_pred             cCeEe
Confidence            77664

>KOG0069|consensus

Probab=85.45  E-value=2.6  Score=44.93  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++.|+||.|.|||..|+.+|+.|...|..|..
T Consensus       159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y  190 (336)
T KOG0069|consen  159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILY  190 (336)
T ss_pred             cccCCEEEEecCcHHHHHHHHhhhhccceeee
Confidence            57999999999999999999999999955544

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=85.11  E-value=6.7  Score=39.52  Aligned_cols=30  Identities=27%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCe-EEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAK-CLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVa  308 (535)
                      .|.+|+|.|.|.||..+++++...|++ |++
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~  150 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVA  150 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            688999999999999999999999997 776

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=84.99  E-value=1.5  Score=42.46  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++|+|.| .|.+|+++++.|+++|++|++++
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~   37 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD   37 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            5789999999 79999999999999999998865

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=84.94  E-value=2.5  Score=41.72  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=64.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC---e-EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA---K-CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga---k-VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      +.++|+|.|.|++|..+++.|.+.|.   . |+. .+.           -+.+.+.+..+..+       ....+.  ++
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~-~~~-----------~~~~~~~~~~~~~~-------~~~~~~~~~~   63 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIV-SNR-----------SNVEKLDQLQARYN-------VSTTTDWKQH   63 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEE-ECC-----------CCHHHHHHHHHHcC-------cEEeCChHHH
Confidence            45789999999999999999988763   2 333 211           23455555554432       111222  34


Q ss_pred             ccccceEEeeccccccccccccccc----cceEEEecCCCCCCHHHHHHHHh--CCceeecccc
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKV----QAKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIF  410 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i----~AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~l  410 (535)
                      + .++|+++-|.....+ .+-+..+    +-++|+-.+.+-......+.|..  +=+.+.|.+-
T Consensus        64 ~-~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a  125 (245)
T PRK07634         64 V-TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTA  125 (245)
T ss_pred             H-hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHH
Confidence            4 479999999876554 3333333    33677777776544444444422  1234556443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=84.89  E-value=1.5  Score=47.13  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+..+|+|.|.|.+|..+++.|...|..=+.|.|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            457899999999999999999999998777777765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=84.79  E-value=2.4  Score=41.65  Aligned_cols=33  Identities=15%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++++++|.|.|. |.+|+.+|+.|++.|++|+.+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~   40 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILN   40 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEE
Confidence            468999999995 999999999999999998863

>KOG0409|consensus

Probab=84.67  E-value=1.5  Score=46.14  Aligned_cols=66  Identities=11%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccce
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVD  358 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~D  358 (535)
                      ..++|-.+|.|+.|.+.+..|...|++|+.             -|.+.+...++.+...++..-|.      | +..+||
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV-------------~dr~~~k~~~f~~~Ga~v~~sPa------e-Vae~sD   93 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTV-------------YDRTKDKCKEFQEAGARVANSPA------E-VAEDSD   93 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEE-------------EeCcHHHHHHHHHhchhhhCCHH------H-HHhhcC
Confidence            568999999999999999999999999988             55888888888776554433211      3 334777


Q ss_pred             EEeecc
Q psy1913         359 ILVPAA  364 (535)
Q Consensus       359 ILiPaA  364 (535)
                      ++|-|-
T Consensus        94 vvitmv   99 (327)
T KOG0409|consen   94 VVITMV   99 (327)
T ss_pred             EEEEEc
Confidence            777553

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=84.64  E-value=2.6  Score=43.58  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=26.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|.+|..+|..|.+.|.+|+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v   30 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRL   30 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEE
Confidence            4799999999999999999999999887

>PRK06849 hypothetical protein; Provisional

Probab=84.63  E-value=1.2  Score=47.30  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=28.4

Q ss_pred             CCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVs  310 (535)
                      +.++|.|.|.+. +|..+|+.|.+.|.+|+++.
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d   35 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILAD   35 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            358999999886 89999999999999999853

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.61  E-value=2.6  Score=43.82  Aligned_cols=95  Identities=14%  Similarity=0.193  Sum_probs=53.8

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC------cccCC--CCc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT------KSAPT--DIM  353 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a------~~i~~--ell  353 (535)
                      +|+|.|.|++|..+|..|.+.|..|..++             -+.+.+....+.+......++.      ...+.  +.+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~-------------r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   68 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWG-------------RNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVL   68 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEe-------------cCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHH
Confidence            69999999999999999999998886532             3334444444332222111111      11122  223


Q ss_pred             cccceEEeeccccccccc--cc-cc-cccc-eEEEecCCCC
Q psy1913         354 FDKVDILVPAAIEKVIRK--SN-AD-KVQA-KIIVEAANGP  389 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~--~n-a~-~i~A-kiIvEgAN~p  389 (535)
                      ..++|+++-|.....+.+  +. .+ .+.. ..|+-..||-
T Consensus        69 ~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         69 SDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             hCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence            347899998876555443  21 22 2321 2344477776

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=84.60  E-value=4.6  Score=41.89  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa  308 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|++
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~  199 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVC  199 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            68999999999999999999999999 5666

>PRK08339 short chain dehydrogenase; Provisional

Probab=84.45  E-value=2.6  Score=42.02  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |.+|+.+|+.|++.|++|+.+
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~   38 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILL   38 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence            478999999996 689999999999999998873

>PRK05867 short chain dehydrogenase; Provisional

Probab=84.45  E-value=2.6  Score=41.42  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=29.1

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++|+++.|.|. |.+|.++|+.|++.|++|+.+
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~   39 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIA   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            67899999996 889999999999999998873

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=84.38  E-value=3.7  Score=43.35  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=60.0

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC---C
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT---D  351 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~---e  351 (535)
                      -.|.||.|.+ .|.||+-+.++-.-+|++||+|+-+.             ++..-.+++.|-  ..+|.... +..   +
T Consensus       149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~-------------eK~~~l~~~lGfD~~idyk~~d-~~~~L~~  214 (340)
T COG2130         149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA-------------EKCDFLTEELGFDAGIDYKAED-FAQALKE  214 (340)
T ss_pred             CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH-------------HHHHHHHHhcCCceeeecCccc-HHHHHHH
Confidence            3699999999 59999988887778999999998541             222222222221  11221111 110   1


Q ss_pred             CccccceEEeecccccccccc-ccccccceEEEecC
Q psy1913         352 IMFDKVDILVPAAIEKVIRKS-NADKVQAKIIVEAA  386 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~-na~~i~AkiIvEgA  386 (535)
                      .---..||++.+-.+.+.+.- +--+++|||++.|+
T Consensus       215 a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~  250 (340)
T COG2130         215 ACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGA  250 (340)
T ss_pred             HCCCCeEEEEEcCCchHHHHHHHhhccccceeeeee
Confidence            122467999999887776642 33345799999997

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=84.38  E-value=3.1  Score=42.34  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCc-----ccCC-CCc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTK-----SAPT-DIM  353 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~-----~i~~-ell  353 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+.             - .+.+..+. +.|. +....+..     .++. +-.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~-------------r-~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~   65 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLV-------------R-PKRAKALR-ERGLVIRSDHGDAVVPGPVITDPEEL   65 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEe-------------c-HHHHHHHH-hCCeEEEeCCCeEEecceeecCHHHc
Confidence            379999999999999999999999887743             1 12233332 2231 11111111     1111 111


Q ss_pred             cccceEEeeccccccccccccccc----c-ceEEEecCCCCC
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGPL  390 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p~  390 (535)
                      ..+||+++-|.....+. +-+..+    . ..+|+--.||--
T Consensus        66 ~~~~d~vilavk~~~~~-~~~~~l~~~~~~~~~ii~~~nG~~  106 (305)
T PRK12921         66 TGPFDLVILAVKAYQLD-AAIPDLKPLVGEDTVIIPLQNGIG  106 (305)
T ss_pred             cCCCCEEEEEecccCHH-HHHHHHHhhcCCCCEEEEeeCCCC
Confidence            25899999987654432 222222    2 356777888753

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=84.33  E-value=1.4  Score=44.28  Aligned_cols=83  Identities=11%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      .+++++|.|.|.|.|+..=++.|.+.|++|+.||           -++.. +|.++.+ .+.+.-.  ...+.++.+ ..
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa-----------p~i~~-el~~l~~-~~~i~~~--~r~~~~~dl-~g   85 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS-----------KKFSK-EFLDLKK-YGNLKLI--KGNYDKEFI-KD   85 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc-----------CCCCH-HHHHHHh-CCCEEEE--eCCCChHHh-CC
Confidence            4679999999999999999999999999999988           33543 3444433 2322111  011122112 36


Q ss_pred             ceEEeeccccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNAD  375 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~  375 (535)
                      +++.|-|+-...+|..-+.
T Consensus        86 ~~LViaATdD~~vN~~I~~  104 (223)
T PRK05562         86 KHLIVIATDDEKLNNKIRK  104 (223)
T ss_pred             CcEEEECCCCHHHHHHHHH
Confidence            7777777655555554433

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=84.15  E-value=5.6  Score=41.80  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=27.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa  308 (535)
                      .|.+|+|.|.|.+|..++.++...|+ +|++
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~  221 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVA  221 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence            57899999999999999999999999 5777

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.09  E-value=4.8  Score=32.98  Aligned_cols=42  Identities=19%  Similarity=0.259  Sum_probs=32.7

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD  328 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~  328 (535)
                      +|+|+|.|.+|-.+|..|.+.|.+|+-| +....+.  .+  +|.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli-~~~~~~~--~~--~~~~~   42 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLI-ERSDRLL--PG--FDPDA   42 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEE-ESSSSSS--TT--SSHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEE-eccchhh--hh--cCHHH
Confidence            6899999999999999999999988654 4444444  44  66554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06182 short chain dehydrogenase; Validated

Probab=84.09  E-value=1.7  Score=43.28  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=28.5

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++.|.|. |.+|+++|+.|.+.|++|++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~   34 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA   34 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            5789999995 8999999999999999999844

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=83.97  E-value=1.7  Score=42.27  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++|+++.|.|. |.+|.++|+.|.++|++|+.++
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~   36 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG   36 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            68999999996 8899999999999999998854

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.78  E-value=2.1  Score=43.89  Aligned_cols=28  Identities=29%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|++|..+|..|+..|..|+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l   31 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTI   31 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEE
Confidence            5899999999999999999999999887

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=83.77  E-value=1.6  Score=50.61  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      ++|+|.|+|++|..+++.|.+.|  .+|++             .|.+.+.+.... +.|...     ...+.  +.+ .+
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~-------------~d~~~~~~~~a~-~~g~~~-----~~~~~~~~~~-~~   63 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVA-------------VDRRAKSLELAV-SLGVID-----RGEEDLAEAV-SG   63 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEE-------------EECChhHHHHHH-HCCCCC-----cccCCHHHHh-cC
Confidence            68999999999999999999998  36666             224444444333 333210     01111  223 47


Q ss_pred             ceEEeeccccccccccccccc----c-ceEEEecCCCC--CCHHHHHHHHhCCceeecccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIF  410 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~l  410 (535)
                      ||+++-|.....+ .+-+..+    + -.+|...+-..  +..+..+.|....+.++|.-=
T Consensus        64 aDvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hP  123 (735)
T PRK14806         64 ADVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHP  123 (735)
T ss_pred             CCEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCC
Confidence            8999999875533 2222222    2 23666555433  334455555444566666543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=83.75  E-value=2  Score=42.49  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=34.2

Q ss_pred             HHHHHhCCCCCCCCcEEEEEccccHHHHHHHHH--HHCCCeEEEEecCC
Q psy1913         267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF--RRGRAKCLAIVEHD  313 (535)
Q Consensus       267 ~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L--~e~GakVVaVsD~~  313 (535)
                      +..+.||.+   +-..|+|+|.||.|++++.+-  .+.|.+|+++.|.+
T Consensus        74 ff~~~Lg~~---~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~  119 (211)
T COG2344          74 FFDDLLGQD---KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVD  119 (211)
T ss_pred             HHHHHhCCC---cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCC
Confidence            444568865   456899999999999998765  36799999987643

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=83.71  E-value=5.1  Score=41.10  Aligned_cols=31  Identities=29%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCe-EEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAK-CLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|++ |+++
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~  194 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGV  194 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            489999999999999999999999999 8874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12828 short chain dehydrogenase; Provisional

Probab=83.70  E-value=1.9  Score=41.26  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.| .|.+|+++++.|.+.|++|++++
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~   38 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIG   38 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence            5789999998 49999999999999999988754

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=83.65  E-value=2.1  Score=45.04  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=48.4

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH----------HcCCcccCCCCc---
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI----------TKGTIKGYPGTK---  346 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~----------~~g~v~~~~~a~---  346 (535)
                      -++|+|.|.|..|+..|..++..|+.|+.             .|++.+.+.+.+.          +.|.+..-....   
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l-------------~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~   69 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVL-------------KDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALA   69 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEE-------------EeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHh
Confidence            47999999999999999999997799887             5566555444322          123332211111   


Q ss_pred             ccCC--CCcc-ccceEEeecccccc
Q psy1913         347 SAPT--DIMF-DKVDILVPAAIEKV  368 (535)
Q Consensus       347 ~i~~--ell~-~~~DILiPaA~~~~  368 (535)
                      .++.  ++-. .+||+.|.|..|+.
T Consensus        70 ~i~~~~~~~~l~~~DlVIEAv~E~l   94 (307)
T COG1250          70 RITPTTDLAALKDADLVIEAVVEDL   94 (307)
T ss_pred             hccccCchhHhccCCEEEEeccccH
Confidence            1222  3222 58999999977663

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=83.60  E-value=1.2  Score=45.58  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      |+..+|+|.|.|-||+|+++.|.+.|..=+.+.|-
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence            45789999999999999999999999755555554

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.28  E-value=3  Score=40.38  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~   36 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALID   36 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            57899999997 9999999999999999987743

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=83.18  E-value=7.2  Score=40.05  Aligned_cols=107  Identities=13%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             CcEEEEEccccHHH-HHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         280 NKTYIVQGFGNVGF-HAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~-~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      -.+|+|.|+|+.+. +.+..+.+.+  +.+++|+|            .|.+.+.+..++.+.-      ...++  ++++
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d------------~~~~~a~~~a~~~~~~------~~~~~~~~ll~   64 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD------------RDPERAEAFAEEFGIA------KAYTDLEELLA   64 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec------------CCHHHHHHHHHHcCCC------cccCCHHHHhc
Confidence            46999999997764 4667777755  58999865            6677888888776521      22333  5675


Q ss_pred             c-cceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCcee
Q psy1913         355 D-KVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLI  405 (535)
Q Consensus       355 ~-~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~v  405 (535)
                      . ++|+++=|+. +..+.+-+..-   ...++||=-=..+..|++++   -+++|+.+
T Consensus        65 ~~~iD~V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l  121 (342)
T COG0673          65 DPDIDAVYIATP-NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL  121 (342)
T ss_pred             CCCCCEEEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence            4 4888888774 44455444221   23677774322233556543   34455544

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=83.08  E-value=9.6  Score=40.82  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=27.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEec
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD  311 (535)
                      .||+|=|||-+|+.+.|.+.+. +..||||-|
T Consensus         3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             eEEEEECCChHHHHHHHHHHhcCCcEEEEecC
Confidence            5899999999999999997754 689999876

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=82.69  E-value=4.8  Score=44.61  Aligned_cols=99  Identities=17%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             EEEEEccccHH-HHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEE
Q psy1913         282 TYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDIL  360 (535)
Q Consensus       282 ~VaIQGfGnVG-~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DIL  360 (535)
                      ++=+.|-|-.| +.+|+.|+++|++|-+             +|+......+..++.|                   .-|+
T Consensus         9 ~iHfIGIgG~GMsglA~iL~~~G~~VsG-------------SD~~~~~~t~~L~~~G-------------------~~i~   56 (459)
T COG0773           9 KIHFIGIGGIGMSGLAEILLNLGYKVSG-------------SDLAESPMTQRLEALG-------------------IEIF   56 (459)
T ss_pred             eEEEEeeccccHHHHHHHHHhCCCceEC-------------ccccccHHHHHHHHCC-------------------CeEe
Confidence            68899999988 6789999999999998             8877665544444432                   2333


Q ss_pred             eeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccc
Q psy1913         361 VPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSL  432 (535)
Q Consensus       361 iPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~  432 (535)
                      +|-.-+|+.++.-       +|+..|=..-.||.... +++||.|+            |+-|||..+...+|
T Consensus        57 ~gh~~~ni~~~~~-------VV~s~Ai~~~NpEi~~A-~e~~ipi~------------~r~e~Laelm~~~~  108 (459)
T COG0773          57 IGHDAENILDADV-------VVVSNAIKEDNPEIVAA-LERGIPVI------------SRAEMLAELMRFRT  108 (459)
T ss_pred             CCCCHHHcCCCce-------EEEecccCCCCHHHHHH-HHcCCCeE------------cHHHHHHHHHhCCe
Confidence            3333223332221       55555555566776554 58888875            78888887655444

>PRK06841 short chain dehydrogenase; Provisional

Probab=82.66  E-value=2.2  Score=41.63  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.| .|.+|+++|+.|.+.|++|+.++
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~   46 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD   46 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46899999999 59999999999999999988754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=82.58  E-value=1.7  Score=42.68  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|+|.|.|-+|..+|..|.+.|..=+.+.|.+
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            457899999999999999999999998655555543

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07060 short chain dehydrogenase; Provisional

Probab=82.50  E-value=2.2  Score=41.27  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~   40 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA   40 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence            467899999997 8999999999999999988744

>PRK06046 alanine dehydrogenase; Validated

Probab=82.43  E-value=5.7  Score=41.72  Aligned_cols=111  Identities=14%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      -++|+|.|.|..|++.++.|.. .+.+.|.|.|            .+.+...+..++.....++ .....++  ++++  
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~------------r~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--  193 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYD------------RTKSSAEKFVERMSSVVGC-DVTVAEDIEEACD--  193 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEEC------------CCHHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--
Confidence            4799999999999999988874 5788888765            4445555544432110011 1122233  4554  


Q ss_pred             ceEEeecccc--ccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         357 VDILVPAAIE--KVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~--~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      +||++-|+..  -++..+... =.+.|.+=|++-|-..|.+.-+.++.-+|+
T Consensus       194 aDiVv~aTps~~P~~~~~~l~-~g~hV~~iGs~~p~~~El~~~~~~~a~vvv  244 (326)
T PRK06046        194 CDILVTTTPSRKPVVKAEWIK-EGTHINAIGADAPGKQELDPEILLRAKVVV  244 (326)
T ss_pred             CCEEEEecCCCCcEecHHHcC-CCCEEEecCCCCCccccCCHHHHhCCcEEE
Confidence            9999988863  223333221 135788889999976666655555553343

>PRK07774 short chain dehydrogenase; Provisional

Probab=82.25  E-value=2.3  Score=41.29  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.|. |-+|.++++.|.++|++|+.+.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~   37 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVAD   37 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            57899999996 9999999999999999998853

>PRK06545 prephenate dehydrogenase; Validated

Probab=81.99  E-value=1.7  Score=46.14  Aligned_cols=28  Identities=18%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|.|.|+|++|..+|+.|.+.|..|..
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i   28 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFI   28 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEE
Confidence            4799999999999999999999976654

>PRK05872 short chain dehydrogenase; Provisional

Probab=81.88  E-value=3.4  Score=42.04  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=36.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +++|+++.|.|. |.+|..+|+.|.+.|++|+.++             -+.+.+.+..++
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~-------------r~~~~l~~~~~~   52 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVD-------------LEEAELAALAAE   52 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe-------------CCHHHHHHHHHH
Confidence            478999999995 8899999999999999988743             555666555544

>PRK06057 short chain dehydrogenase; Provisional

Probab=81.87  E-value=3.4  Score=40.57  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++|++|.|.|. |.+|.++++.|.++|++|+.+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~   37 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG   37 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence            67899999997 999999999999999999884

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.79  E-value=2.9  Score=46.06  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .+.+++|.|.|+|..|..+|++|++.|++|++ +|
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~-~D   45 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVV-AD   45 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEE-EC
Confidence            36789999999999999999999999997655 44

>PRK05876 short chain dehydrogenase; Provisional

Probab=81.76  E-value=3.4  Score=41.63  Aligned_cols=32  Identities=16%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      +++|+++.|.| .|.+|+++|+.|++.|++|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~   35 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVL   35 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence            36889999998 689999999999999999886

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.76  E-value=3.1  Score=45.33  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +++++|.|.|+|.-|..+|++|.++|++|.+ +|.
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~-~D~   40 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIA-WDD   40 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEE-ECC
Confidence            6789999999999999999999999998765 553

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=81.74  E-value=2.9  Score=46.18  Aligned_cols=126  Identities=19%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC---CCcc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT---DIMF  354 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~---ell~  354 (535)
                      +.+++|+|.|+|.-|..+|++|++.|++|++ +|.+=..   .+    .... ....+        +.+....   ..+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v-~D~~~~~---~~----~~~~-~~~~~--------~i~~~~g~~~~~~~   67 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTV-SDDRPAP---EG----LAAQ-PLLLE--------GIEVELGSHDDEDL   67 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEE-EcCCCCc---cc----hhhh-hhhcc--------CceeecCccchhcc
Confidence            4589999999999999999999999999887 3321000   00    0001 00000        1111111   1223


Q ss_pred             ccceEEeec--cc------------ccccccc--ccccc--cce-EEEecCCCCC--CHHHHHHHHhCCceeeccccccc
Q psy1913         355 DKVDILVPA--AI------------EKVIRKS--NADKV--QAK-IIVEAANGPL--TPAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       355 ~~~DILiPa--A~------------~~~It~~--na~~i--~Ak-iIvEgAN~p~--T~eA~~iL~~rGI~viPD~laNa  413 (535)
                      ..+|++|..  -.            +-.|..+  =+-++  .++ |-+-|.||=+  |.-...+|.+.|....  .--|.
T Consensus        68 ~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~--lgGNI  145 (448)
T COG0771          68 AEFDLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL--LGGNI  145 (448)
T ss_pred             ccCCEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce--ecccc
Confidence            445555432  11            1111111  11221  244 4468999984  4667789999998654  45788


Q ss_pred             cCcchhhHh
Q psy1913         414 GGVTVSYFE  422 (535)
Q Consensus       414 GGVivSy~E  422 (535)
                      |.....+++
T Consensus       146 G~p~l~~~~  154 (448)
T COG0771         146 GTPALELLE  154 (448)
T ss_pred             CccHHHhhc
Confidence            877776664

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=81.72  E-value=3.8  Score=44.47  Aligned_cols=116  Identities=17%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc----cc----------CC
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI----KG----------YP  343 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v----~~----------~~  343 (535)
                      ++|+|.| .|.+|......+.+.  .++|++++           ++-+++.|.+..++++.-    .+          +.
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLa-----------a~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~   70 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALS-----------AGKNVELLAEQAREFRPKYVVVADEEAAKELKEALA   70 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEE-----------cCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhc
Confidence            6899999 999999998888653  78999998           567888888877776521    00          10


Q ss_pred             C--CcccCC-----CCccc-cceEEeeccccccccccccccccceEEEecCCCCCCHHHHHH----HHhCCceeec
Q psy1913         344 G--TKSAPT-----DIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAM----LLKKNVLIIP  407 (535)
Q Consensus       344 ~--a~~i~~-----ell~~-~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~i----L~~rGI~viP  407 (535)
                      +  .+....     ++.+. ++|+++-|..+-.==.-....|++.--+--||-++-..+...    .+++|..++|
T Consensus        71 ~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~P  146 (385)
T PRK05447         71 AAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILP  146 (385)
T ss_pred             cCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEE
Confidence            1  111111     34443 589888776542111223334444333445666643333332    2556666666

>PRK08177 short chain dehydrogenase; Provisional

Probab=81.62  E-value=2.5  Score=40.82  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++|.|.| .|.+|+.+|+.|.+.|++|++++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~   32 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATV   32 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEe
Confidence            4678887 79999999999999999998865

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=81.60  E-value=3.5  Score=40.31  Aligned_cols=34  Identities=24%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~   38 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIAD   38 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence            367899999996 9999999999999999998743

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=81.58  E-value=3  Score=40.26  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      +++++++.|.| .|.+|+++++.|.++|+.|+.
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~   35 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGL   35 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            36789999999 599999999999999997765

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=81.57  E-value=1.6  Score=42.68  Aligned_cols=36  Identities=14%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+.++|.|.|.|.+|..+++.|...|..=+.+.|.+
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            467899999999999999999999999877777653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=81.45  E-value=1.7  Score=43.95  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc-CC-CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-PT-DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i-~~-el  352 (535)
                      +.++|.|.|+|+.|..+++.|.+.+.    +|++ +|       ++     .+.+       +       .... ++ ++
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~-~~-------~~-----~~~~-------~-------~~~~~~~~~~   54 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYY-HT-------PS-----KKNT-------P-------FVYLQSNEEL   54 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEE-EC-------CC-----hhcC-------C-------eEEeCChHHH
Confidence            34689999999999999999998872    2444 22       11     1110       0       1111 22 33


Q ss_pred             ccccceEEeeccccccccc---cccccccceEEEecCCCCCCHHHHHHHHh--CCceeecccc
Q psy1913         353 MFDKVDILVPAAIEKVIRK---SNADKVQAKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIF  410 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~---~na~~i~AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~l  410 (535)
                      . .+||++|-|.....+..   +..+.+..+.|+--+++-......++|..  +-+.++|-.-
T Consensus        55 ~-~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p  116 (260)
T PTZ00431         55 A-KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP  116 (260)
T ss_pred             H-HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence            3 48899999976555321   22333444677777877765555666532  2356666654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=81.45  E-value=1.9  Score=44.69  Aligned_cols=28  Identities=18%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVa  308 (535)
                      ++|+|.|.|+||+.+|..|...|.  .|+.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l   30 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVL   30 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            379999999999999999999994  4544

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=81.16  E-value=2.5  Score=44.00  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             cEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~  356 (535)
                      .+|+|.|.|++|...+..+. ..+..+++|+|.+          .+-+.+ +..++.|.-      ...+.  +++. -+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d----------~es~~l-a~A~~~Gi~------~~~~~~e~ll~~~d   64 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID----------PESDGL-ARARELGVK------TSAEGVDGLLANPD   64 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC----------cccHHH-HHHHHCCCC------EEECCHHHHhcCCC
Confidence            48999999999996655454 5689999998742          111222 233344311      11222  3443 46


Q ss_pred             ceEEeeccccccccccccccc---cceEEEe--cCCCC
Q psy1913         357 VDILVPAAIEKVIRKSNADKV---QAKIIVE--AANGP  389 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i---~AkiIvE--gAN~p  389 (535)
                      +|+.+-|+. +..+.+++...   .+.+|+|  .+++|
T Consensus        65 IDaV~iaTp-~~~H~e~a~~al~aGk~VIdekPa~~~p  101 (285)
T TIGR03215        65 IDIVFDATS-AKAHARHARLLAELGKIVIDLTPAAIGP  101 (285)
T ss_pred             CCEEEECCC-cHHHHHHHHHHHHcCCEEEECCccccCC
Confidence            888888884 44666666554   2455554  34555

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.12  E-value=2.1  Score=47.16  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++|++|+|.|+|.-|..+|++|.+.|++|+. +|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~-~d~   39 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQAL-TLF   39 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEE-EcC
Confidence            5689999999999999999999999999876 553

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=81.09  E-value=2.2  Score=43.82  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .+.+|+|.|.|.||..+++++...|+++|.++|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~  176 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWE  176 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence            577899999999999999999999998766554

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=80.97  E-value=1.2  Score=47.37  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             EEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-C-CcccCCCCcccCC--CC--cc
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-G-TIKGYPGTKSAPT--DI--MF  354 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g-~v~~~~~a~~i~~--el--l~  354 (535)
                      |.|.|.|.||+.+++.|.+.+-  +|+.             +|-+.+.+.+..++. + .+... .. .+.+  ++  +-
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~v-------------a~r~~~~~~~~~~~~~~~~~~~~-~~-d~~~~~~l~~~~   65 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTV-------------ADRNPEKAERLAEKLLGDRVEAV-QV-DVNDPESLAELL   65 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEE-------------EESSHHHHHHHHT--TTTTEEEE-E---TTTHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEE-------------EECCHHHHHHHHhhccccceeEE-EE-ecCCHHHHHHHH
Confidence            6799999999999999999874  5665             457788887776542 1 11100 00 1122  22  23


Q ss_pred             ccceEEeecccccccccccc---ccccceEEEecCCCCCC---HHHHHHHHhCCceeecccccccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNA---DKVQAKIIVEAANGPLT---PAAHAMLLKKNVLIIPDIFANAG  414 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na---~~i~AkiIvEgAN~p~T---~eA~~iL~~rGI~viPD~laNaG  414 (535)
                      .+|||+|-|+... .+..-+   -+..+.+|= .+.  .+   .+-++..+++|+.++++.=.+.|
T Consensus        66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG  127 (386)
T PF03435_consen   66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG  127 (386)
T ss_dssp             TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred             hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence            5889999999765 222211   122446555 111  12   23345667899999998766654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08628 short chain dehydrogenase; Provisional

Probab=80.96  E-value=2.7  Score=41.23  Aligned_cols=34  Identities=18%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+|+++.|.| .|.+|+++|+.|.++|++|+.++
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~   38 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG   38 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence            47899999999 58899999999999999988753

>PRK09186 flagellin modification protein A; Provisional

Probab=80.94  E-value=3.8  Score=39.96  Aligned_cols=32  Identities=19%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++|.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~   34 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA   34 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            46899999995 899999999999999999885

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=80.89  E-value=4.1  Score=39.60  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~   35 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD   35 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence            4678999999 69999999999999999998853

>PRK06125 short chain dehydrogenase; Provisional

Probab=80.80  E-value=4  Score=40.19  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~   38 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA   38 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence            367899999997 7899999999999999988843

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=80.80  E-value=1.8  Score=45.52  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~  313 (535)
                      +.++|+|.|.|+||+.+|..++..|. . +.+.|.+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~   39 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIV   39 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCC
Confidence            45799999999999999999998885 6 6655643

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=80.67  E-value=3.6  Score=42.45  Aligned_cols=79  Identities=15%  Similarity=0.203  Sum_probs=52.0

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC---cc------cCCCCcc
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT---IK------GYPGTKS  347 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~---v~------~~~~a~~  347 (535)
                      +.++++.|.| .+..|+.+|+.|+++|+.||-|+             =+.+.|.+.+++-..   +.      ++...+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLva-------------R~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~   70 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVA-------------RREDKLEALAKELEDKTGVEVEVIPADLSDPEA   70 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe-------------CcHHHHHHHHHHHHHhhCceEEEEECcCCChhH
Confidence            5789999999 59999999999999999999877             445666665543211   10      1111111


Q ss_pred             cCC---CCcc--ccceEEeeccccccc
Q psy1913         348 APT---DIMF--DKVDILVPAAIEKVI  369 (535)
Q Consensus       348 i~~---ell~--~~~DILiPaA~~~~I  369 (535)
                      +..   ++.+  .++||||-+|.-+.-
T Consensus        71 ~~~l~~~l~~~~~~IdvLVNNAG~g~~   97 (265)
T COG0300          71 LERLEDELKERGGPIDVLVNNAGFGTF   97 (265)
T ss_pred             HHHHHHHHHhcCCcccEEEECCCcCCc
Confidence            111   1222  489999999985443

>PRK06138 short chain dehydrogenase; Provisional

Probab=80.66  E-value=2.6  Score=40.87  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.|. |.+|+++|+.|.+.|++|+.++
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~   36 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD   36 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence            57899999985 8999999999999999998854

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=80.61  E-value=2  Score=42.02  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      |+..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            457899999999999999999999999877777754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.44  E-value=2.9  Score=40.43  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++|.|.|. |.+|.++++.|.++|++|++++
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~   36 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD   36 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            57889999994 8999999999999999987753

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=80.26  E-value=3  Score=40.46  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      |+++++.|.|. |.+|+++|+.|.+.|++|+.+.+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~   35 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG   35 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence            46789999985 99999999999999999988554

>PLN02240 UDP-glucose 4-epimerase

Probab=80.26  E-value=2.7  Score=43.29  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++|.|.|. |.+|+++++.|.+.|++|++++
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            67899999985 9999999999999999999865

>PRK12742 oxidoreductase; Provisional

Probab=80.12  E-value=3.2  Score=39.94  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++|.|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~   36 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT   36 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence            67899999995 899999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	535
1l1f_A	505	Structure Of Human Glutamate Dehydrogenase-Apo Form		1e-135
3etd_A	501	Structure Of Glutamate Dehydrogenase Complexed With		1e-134
1nr1_A	496	Crystal Structure Of The R463a Mutant Of Human Glut		1e-134
1nqt_A	496	Crystal Structure Of Bovine Glutamate Dehydrogenase		1e-133
3mw9_A	501	Bovine Glutamate Dehydrogenase Complexed With Nadh,		1e-133
1hwy_A	501	Bovine Glutamate Dehydrogenase Complexed With Nad A		1e-130
1b26_A	416	Glutamate Dehydrogenase Length = 416		3e-76
1b3b_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		3e-76
2tmg_A	415	Thermotoga Maritima Glutamate Dehydrogenase Mutant		9e-71
3aog_A	440	Crystal Structure Of Glutamate Dehydrogenase (Gdhb)		2e-70
3aoe_A	424	Crystal Structure Of Hetero-Hexameric Glutamate Deh		2e-70
1gtm_A	419	Structure Of Glutamate Dehydrogenase Length = 419		1e-63
3k92_A	424	Crystal Structure Of A E93k Mutant Of The Majour Ba		3e-60
1bvu_A	418	Glutamate Dehydrogenase From Thermococcus Litoralis		3e-60
2yfq_A	421	Crystal Structure Of Glutamate Dehydrogenase From P		5e-60
3k8z_A	423	Crystal Structure Of Gudb1 A Decryptified Secondary		9e-60
1euz_A	419	Glutamate Dehydrogenase From Thermococcus Profundus		9e-60
1v9l_A	421	L-Glutamate Dehydrogenase From Pyrobaculum Islandic		1e-58
3aoe_E	419	Crystal Structure Of Hetero-Hexameric Glutamate Deh		1e-46
1hrd_A	449	Glutamate Dehydrogenase Length = 449		5e-35
1k89_A	449	K89l Mutant Of Glutamate Dehydrogenase Length = 449		2e-34
1aup_A	449	Glutamate Dehydrogenase Length = 449		1e-33
3r3j_A	456	Kinetic And Structural Characterization Of Plasmodi		5e-32
2yfh_A	448	Structure Of A Chimeric Glutamate Dehydrogenase Len		4e-28
2bma_A	470	The Crystal Structure Of Plasmodium Falciparum Glut		4e-23
4fcc_A	450	Glutamate Dehydrogenase From E. Coli Length = 450		3e-20
3sbo_A	447	Structure Of E.Coli Gdh From Native Source Length =		3e-20
2yfg_E	447	Structural Determinants Of Cofactor Specificity And		5e-20
1c1d_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		3e-14
1c1x_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		3e-14
1bw9_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		3e-14
1c1d_A	355	L-Phenylalanine Dehydrogenase Structure In Ternary		8e-14
1bxg_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		9e-14
1c1x_B	355	L-Phenylalanine Dehydrogenase Structure In Ternary		1e-13
1bxg_A	356	Phenylalanine Dehydrogenase Structure In Ternary Co		1e-13
1bw9_B	356	Phenylalanine Dehydrogenase Structure In Ternary Co		1e-13
3vpx_A	364	Crystal Structure Of Leucine Dehydrogenase From A P		2e-08
1leh_A	364	Leucine Dehydrogenase From Bacillus Sphaericus Leng		6e-05

>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505

Iteration: 1
 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 241/502 (48%), Positives = 331/502 (65%), Gaps = 7/502 (1%)
Query: 36  VPDKEN-PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSL 94
           V D+E+ P FF+ VE +F R    +  +    +R R+ ++E    R  GI+ +++  + +
Sbjct: 4   VADREDDPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHV 62
Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           L + FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  
Sbjct: 63  LSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVV 122
Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
           +VPFGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW
Sbjct: 123 DVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSW 182
Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
             D YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+
Sbjct: 183 IADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGM 242
Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI 334
            P   +KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+
Sbjct: 243 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKL 300
Query: 335 TKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAA 394
             G+I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A
Sbjct: 301 QHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEA 360
Query: 395 HAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXX 454
             + L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++            
Sbjct: 361 DKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQES 420
Query: 455 XXXXFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
               F K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LD
Sbjct: 421 LERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLD 480
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR AAY +A+ K+FK Y EAG+
Sbjct: 481 LRTAAYVNAIEKVFKVYNEAGV 502

>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501

Iteration: 1
 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/498 (47%), Positives = 328/498 (65%), Gaps = 6/498 (1%)
Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           +++P FF+ VE +F R    +  +    ++ R+ T+E    R  GI+ +++  + +L + 
Sbjct: 4   EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-TEEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 63  FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPG+DVPAPD +T  REMSW  D 
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P  
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT+ VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+  GT
Sbjct: 243 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
           L++N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++                
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498

>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496

Iteration: 1
 Score =  474 bits (1219), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/496 (47%), Positives = 326/496 (65%), Gaps = 6/496 (1%)
Query: 41  NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
           +P FF+ VE +F R    +  +    +R R+ ++E    R  GI+ +++  + +L + FP
Sbjct: 1   DPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHVLSLSFP 59
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
            RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPFGG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
           AK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  D YA
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
            T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P   +
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK 340
           KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+  G+I 
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKLQHGSIL 297
Query: 341 GYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK 400
           G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + L+
Sbjct: 298 GFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLE 357
Query: 401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXXFN 460
           +N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++                F 
Sbjct: 358 RNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFG 417
Query: 461 K---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAY 517
           K    I I  +A ++DRIS A+EKDIV S L ++M+ + R I+  A K +  LDLR AAY
Sbjct: 418 KHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMEASARQIMRTAMKYNLGLDLRTAAY 477
Query: 518 CSALFKIFKTYEEAGL 533
            +A+ K+FK Y EAG+
Sbjct: 478 VNAIEKVFKVYNEAGV 493

>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496

Iteration: 1
 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/496 (47%), Positives = 326/496 (65%), Gaps = 6/496 (1%)
Query: 41  NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
           +P FF+ VE +F R    +  +    +R R+ ++E    R  GI+ +++  + +L + FP
Sbjct: 1   DPNFFKMVEGFFDRGASIVEDKLVEDLRTRE-SEEQKRNRVRGILRIIKPCNHVLSLSFP 59
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
            RRD G +E+I+ YR  H   ++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPFGG
Sbjct: 60  IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
           AK G++I+P  Y + ELE+ITR+F +EL KK ++GPGIDVPAPD +T  REMSW  D YA
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
            T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P   +
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK 340
           KT++VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+  G+I 
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDG--IDPKELEDFKLQHGSIL 297
Query: 341 GYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLK 400
           G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + L+
Sbjct: 298 GFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLE 357
Query: 401 KNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXXFN 460
           +N+++IPD++ NAGGVTVSYFEWLKN++H S GR++F Y+++                F 
Sbjct: 358 RNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFG 417
Query: 461 KK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAY 517
           K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR AAY
Sbjct: 418 KHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAY 477
Query: 518 CSALFKIFKTYEEAGL 533
            +A+ K+FK Y EAG+
Sbjct: 478 VNAIEKVFKVYNEAGV 493

>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501

Iteration: 1
 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/498 (46%), Positives = 326/498 (65%), Gaps = 6/498 (1%)
Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           +++P FF+ VE +F R    +  +    ++ R+ T+E    R   I+ +++  + +L + 
Sbjct: 4   EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRE-TEEQKRNRVRSILRIIKPCNHVLSLS 62
Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 63  FPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPG+DVPAPD +T  REMSW  D 
Sbjct: 123 GGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P  
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  GT
Sbjct: 243 GDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
           L++N+++IPD++ NAGGVTVSYFEWL N++H S GR++F Y+++                
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498

>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501

Iteration: 1
 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/498 (46%), Positives = 325/498 (65%), Gaps = 6/498 (1%)
Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           +++P FF+ VE +F R    +  +    ++ R+ T E    R  GI+ +++  + +L + 
Sbjct: 4   EDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQ-TQEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
           FP RRD G +E+I+ YR  H   ++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VPF
Sbjct: 63  FPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPF 122
Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAK G++I+P  Y + +LE+ITR+F +EL KK ++GPG+DVPAP+ +T  REMSW  D 
Sbjct: 123 GGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADT 182
Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  + N  YM  +G+ P  
Sbjct: 183 YASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTPGF 242
Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
            +KT+ VQGFGNVG H+ RY  R  AKC+A+ E D +I    G  I+ K+L  +K+  GT
Sbjct: 243 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--IDPKELEDFKLQHGT 300
Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           I G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  + 
Sbjct: 301 ILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIF 360
Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXXXXXXXXX 458
           L++N+++IPD++ NAGGVTVSYF+ LKN++H S GR++F Y+++                
Sbjct: 361 LERNIMVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERK 420
Query: 459 FNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA 515
           F K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR A
Sbjct: 421 FGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 480
Query: 516 AYCSALFKIFKTYEEAGL 533
           AY +A+ K+F+ Y EAG+
Sbjct: 481 AYVNAIEKVFRVYNEAGV 498

>pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416

Iteration: 1
 Score =  282 bits (722), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 170/442 (38%), Positives = 249/442 (56%), Gaps = 66/442 (14%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L ++FP R D G  E+   YR  H   + P KGGIRY  DV  DEVKALA  MT+K + 
Sbjct: 37  VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            N+PFGG KGG+R+DP K +  ELER++R+F  E+  +  +GP  D+PAPD NT+A  ++
Sbjct: 97  MNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIA 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W+ D Y+  +G T    LG+VTGKP+ LGG +GRE ATGRGV   A +       M  +G
Sbjct: 155 WYMDTYSMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 205
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
           ++P  +  T  VQGFGNVG F A    +   +K +A+ +    I   +G ++  ++L  Y
Sbjct: 206 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 261
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
           K   GT+  YP G +    +++   VDILVPAA+E  I   NA++++AK +VE ANGP T
Sbjct: 262 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 321
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
           P A  +L ++ +L++PDI ANAGGVTVSYFEW++++        SF +D           
Sbjct: 322 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 364
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                                D++ NA EK          M+ A  D+++  EK +  +D
Sbjct: 365 ---------------------DQVRNALEK---------MMKGAFNDVMKVKEKYN--VD 392
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           +R AAY  A+ ++    ++ G+
Sbjct: 393 MRTAAYILAIDRVAYATKKRGI 414

>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415

Iteration: 1
 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/442 (38%), Positives = 250/442 (56%), Gaps = 66/442 (14%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L ++FP R D G  E+   YR  H   + P KGGIRY  DV  DEVKALA  MT+K + 
Sbjct: 36  VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            ++PFGG KGG+R+DP K +  ELER++R+F  E+  +  +GP  D+PAPD NT+A  ++
Sbjct: 96  MDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W+ D Y+  +G T    LG+VTGKP+ LGG +GRE ATGRGV   A +       M  +G
Sbjct: 154 WYMDTYSMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 204
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
           ++P  +  T  VQGFGNVG F A    +   +K +A+ +    I   +G ++  ++L  Y
Sbjct: 205 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 260
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
           K   GT+  YP G +    +++   VDILVPAA+E  I   NA++++AK +VE ANGP T
Sbjct: 261 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 320
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
           P A  +L ++ +L++PDI ANAGGVTVSYFEW++++        SF +D           
Sbjct: 321 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 363
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                                D++ NA EK          M++A  D+++  EK +  +D
Sbjct: 364 ---------------------DQVRNALEK---------MMKKAFNDVMKVKEKYN--VD 391
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           +R AAY  A+ ++    ++ G+
Sbjct: 392 MRTAAYILAIDRVAYATKKRGI 413

>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415

Iteration: 1
 Score =  264 bits (675), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 171/442 (38%), Positives = 249/442 (56%), Gaps = 66/442 (14%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L ++FP R D G  E+   YR  H   + P KGGIRY  DV  DEVKALA  MT+K + 
Sbjct: 36  VLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            N+PFGG KGG+R+DP K + RELER++R+F  E+  +  +GP  D+PAPD NT+A  ++
Sbjct: 96  MNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREI--QVIIGPYNDIPAPDVNTNADVIA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W+ D Y   +G T    LG+VTGKP+ LGG +GRE ATGRGV   A +       M  +G
Sbjct: 154 WYMDEYEMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLA------MDVLG 204
Query: 274 LEPCMENKTYIVQGFGNVG-FHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY 332
           ++P  +  T  VQGFGNVG F A    +   +K +A+ +    I   +G ++  ++L  Y
Sbjct: 205 IDP--KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDV--EELIRY 260
Query: 333 KITKGTIKGYP-GTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
           K   GT+  YP G +    +++   VDILVPAA+E  I   NA++++AK +VE ANGP T
Sbjct: 261 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTT 320
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEXXXXXXXXX 451
           P A  +L ++ +L++PDI ANAGGVTVSYFEW++++        SF +D           
Sbjct: 321 PEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ-------SFFWDL---------- 363
Query: 452 XXXXXXXFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                                D++ NA EK          M+ A  D+++  EK +  +D
Sbjct: 364 ---------------------DQVRNALEK---------MMKGAFNDVMKVKEKYN--VD 391
Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           +R AAY  A+ ++    ++ G+
Sbjct: 392 MRTAAYILAIDRVAYATKKRGI 413

>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440

Iteration: 1
 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/336 (44%), Positives = 204/336 (60%), Gaps = 16/336 (4%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L +  P R D G     + YR HH T + P KGG+RY  +V   EV ALA  MT KN+ 
Sbjct: 62  VLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAA 121
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
             +P+GG KGGIR+DP K +  ELER+TR++  E+     +GP  D+PAPD NT  REM+
Sbjct: 122 VGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI--GILLGPDRDIPAPDVNTGEREMA 179
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y+  +G T     G+VTGKP+ LGG  GR  ATGRGVF  A           +IG
Sbjct: 180 WMMDTYSMNVGRT---VPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAE------KIG 230
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           L+  +E     +QGFGNVG  AAR F    A+ +A+ +H   +  + G  I+  DL  + 
Sbjct: 231 LQ--VEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG--IDPYDLLRHV 286
Query: 334 ITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTP 392
              G ++GYP  +  P  D     V+ LVPAA+EK I + NA +++A+I+ E ANGP TP
Sbjct: 287 QEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTP 346
Query: 393 AAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           AA  +LL+K VL++PD+ ANAGGVTVSYFEW+++ +
Sbjct: 347 AADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFN 382

>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424

Iteration: 1
 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/336 (44%), Positives = 204/336 (60%), Gaps = 16/336 (4%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L +  P R D G     + YR HH T + P KGG+RY  +V   EV ALA  MT KN+ 
Sbjct: 46  VLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAA 105
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
             +P+GG KGGIR+DP K +  ELER+TR++  E+     +GP  D+PAPD NT  REM+
Sbjct: 106 VGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEI--GILLGPDRDIPAPDVNTGEREMA 163
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y+  +G T     G+VTGKP+ LGG  GR  ATGRGVF  A           +IG
Sbjct: 164 WMMDTYSMNVGRT---VPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAE------KIG 214
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           L+  +E     +QGFGNVG  AAR F    A+ +A+ +H   +  + G  I+  DL  + 
Sbjct: 215 LQ--VEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG--IDPYDLLRHV 270
Query: 334 ITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTP 392
              G ++GYP  +  P  D     V+ LVPAA+EK I + NA +++A+I+ E ANGP TP
Sbjct: 271 QEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTP 330
Query: 393 AAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           AA  +LL+K VL++PD+ ANAGGVTVSYFEW+++ +
Sbjct: 331 AADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFN 366

>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419

Iteration: 1
 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 200/341 (58%), Gaps = 22/341 (6%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E+  P   D G  ++   +R  H   + PTKGGIR+  +     VKALAA MT+K + 
Sbjct: 36  IVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            ++P+GG KGGI +DP K ++RE ER+ R +   +   + + P  D+PAPD  T+ + M+
Sbjct: 96  MDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIY--DVISPYEDIPAPDVYTNPQIMA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG----VFTAAEILVNNEEYM 269
           W  D Y +T+      A G++TGKPL +GG  GR  AT RG    +  AA++L       
Sbjct: 154 WMMDEY-ETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVL------- 205
Query: 270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKD 328
              G +  ++ KT  +QG+GN G++ A+        K +A+ +    I    G  +N  +
Sbjct: 206 ---GWD-TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDG--LNADE 259
Query: 329 LHTYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAAN 387
           +  +K   G++K +PG  +   + + + +VD+L PAAIE+VI K NAD ++AKI+ E AN
Sbjct: 260 VLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVAN 319
Query: 388 GPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           GP+TP A  +L +K +L IPD   NAGGVTVSYFEW++NI+
Sbjct: 320 GPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNIT 360

>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424

Iteration: 1
 Score =  229 bits (584), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 201/353 (56%), Gaps = 19/353 (5%)
Query: 78  ALRRNG----IIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYAL 133
           ALR+ G    +  LM+    +L ++ P + D+G  ++   YR  H     PTKGG+R+  
Sbjct: 28  ALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHP 87
Query: 134 DVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNY 193
           +VN ++VKAL+  MT K   +N+P+GG KGGI  DP   +  ELER++R +   +     
Sbjct: 88  EVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAI--SQI 145
Query: 194 VGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGR 253
           VGP  D+PAPD  T+++ M+W  D Y++       ++ G +TGKPL LGG +GRE+AT +
Sbjct: 146 VGPTKDIPAPDVYTNSQIMAWMMDEYSRL---REFDSPGFITGKPLVLGGSQGRETATAQ 202
Query: 254 GVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD 313
           GV       +  EE + + G++  ++N   I+QGFGN G   A++     AK + I + +
Sbjct: 203 GV------TICIEEAVKKKGIK--LQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 314 TAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSN 373
             +    G +I Y  L   + + G +           +++    DILVPAAI   I   N
Sbjct: 255 GGLYNPDGLDIPY--LLDKRDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQITAKN 312
Query: 374 ADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
           A  +QA I+VE ANGP T  A  +L ++ VL++PDI A+AGGVTVSYFEW++N
Sbjct: 313 AHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQN 365

>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis Length = 418

Iteration: 1
 Score =  229 bits (583), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 195/337 (57%), Gaps = 15/337 (4%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E+  P   D G  ++   +R  +   + PTKGGIR+  +     VKALAA MT+K + 
Sbjct: 36  IVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAV 95
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            ++P+GG KGG+  +P + ++RE ER+ R +   +   + + P  D+PAPD  T+ + M+
Sbjct: 96  MDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIY--DVISPYTDIPAPDVYTNPQIMA 153
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y +T+      + G++TGKP  +GGI  R  AT RG            E    +G
Sbjct: 154 WMMDEY-ETISRRKDPSFGVITGKPPSVGGIVARMDATARGASYTVR------EAAKALG 206
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTY 332
           ++  ++ KT  +QG+GN G++ A+        K +A+ +    I    G  +N  ++  +
Sbjct: 207 MD--LKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYNPDG--LNADEVLAW 262
Query: 333 KITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
           K   G++K +PG  +   + + + +VD+L P+AIE+VI K NAD ++AKI+ E ANGP T
Sbjct: 263 KKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTT 322
Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           P A  +L +K +LIIPD   NAGGVTVSYFEW++NI+
Sbjct: 323 PEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNIT 359

>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421

Iteration: 1
 Score =  228 bits (582), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 196/346 (56%), Gaps = 20/346 (5%)
Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           L++    ++EI  P + D G  ++ + +R  H +   P+KGG+R+  +VN DEVKAL+  
Sbjct: 31  LLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLW 90
Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           MT+K     +P+GG KGGI +DP++ + RELE+++R +   L K  Y+G  ID+PAPD N
Sbjct: 91  MTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIPAPDVN 148
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T+ + MSWF D Y K  G      +G  TGKP+  GG  GR  ATG GV           
Sbjct: 149 TNGQIMSWFVDEYVKLNGER--MDIGTFTGKPVAFGGSEGRNEATGFGVAVVV------R 200
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT-----AIVPDKG 321
           E     G++  ME+    VQGFGNVG    +   R   K  AI E D      A+  + G
Sbjct: 201 ESAKRFGIK--MEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENG 258
Query: 322 TEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK-VDILVPAAIEKVIRKSNADKVQAK 380
             I++K+L  YK    T+ G+PG +    +  + K  DI+VPAA+E VI    A  + AK
Sbjct: 259 --IDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAK 316
Query: 381 IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
           ++ EAANGP TP    +L ++ + + PDI  N+GGV VSY+EW++N
Sbjct: 317 LVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQN 362

>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423

Iteration: 1
 Score =  228 bits (580), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 131/340 (38%), Positives = 196/340 (57%), Gaps = 16/340 (4%)
Query: 87  LMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAAL 146
           L++    LL ++ P R D G  ++   YR H+ +   PTKGGIR+  +V   EVKAL+  
Sbjct: 41  LLKEPMRLLTVKIPVRMDDGSVKIFTGYRAHNDS-VGPTKGGIRFHPNVTEKEVKALSIW 99
Query: 147 MTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYN 206
           M+ K    ++P+GG KGGI  DP   + RELER++R +   +     VGP  DVPAPD  
Sbjct: 100 MSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAI--SQIVGPTKDVPAPDVF 157
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T+++ M+W  D Y++       N+ G +TGKPL LGG  GRESAT +GV    +      
Sbjct: 158 TNSQIMAWMMDEYSRI---DEFNSPGFITGKPLVLGGSHGRESATAKGVTICIK------ 208
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
           E   + G++  ++    +VQGFGN G + A++     AK + I +    +   +G +I+Y
Sbjct: 209 EAAKKRGID--IKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDY 266
Query: 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
             L   + + GT+           +++    DILVPAAIE  I + NA  ++AKI+VEAA
Sbjct: 267 --LLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAA 324
Query: 387 NGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
           NGP T     +L  +++L++PD+ A+AGGVTVSYFEW++N
Sbjct: 325 NGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQN 364

>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419

Iteration: 1
 Score =  228 bits (580), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 196/339 (57%), Gaps = 19/339 (5%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E+  P   D G  ++   +R  H   + PTKGGIR+        VKALA  MT+K + 
Sbjct: 37  IVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAV 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            ++P+GG KGGI ++P + + RE ER+ R +   +   + +GP  D+PAPD  T+ + M 
Sbjct: 97  VDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVY--DVIGPWTDIPAPDVYTNPKIMG 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEI 272
           W  D Y +T+      A G++TGKPL +GG  GR +AT +G +FT         E    +
Sbjct: 155 WMMDEY-ETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTI-------REAAKAL 206
Query: 273 GLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV--PDKGTEINYKDLH 330
           G++  ++ K   VQG+GN G++ A+  +      +  V      +  PD    ++  ++ 
Sbjct: 207 GID--LKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYNPDG---LDPDEVL 261
Query: 331 TYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP 389
            +K   G++K +PG  +   + + + +VD+L PAAIE+VI + NAD ++AKI+ E ANGP
Sbjct: 262 KWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGP 321
Query: 390 LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           +TP A  +L +K +L IPD   NAGGVTVSYFEW++NI+
Sbjct: 322 VTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNIN 360

>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Complexed With Nad Length = 421

Iteration: 1
 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 187/343 (54%), Gaps = 22/343 (6%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L +  P R D G +E+ + YR  HC    P KGG+R+  +V   +  ALA LMT KNS 
Sbjct: 37  VLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSL 96
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P+GGAKG +R+DP K + RELE ++R +A  +     +G  +D+PAPD  T+A+ M+
Sbjct: 97  AGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPAPDVGTNAQIMA 154
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y+K  G    N  G+ T KP  L G   RE ATG GV  A   +           
Sbjct: 155 WMVDEYSKIKGY---NVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKK-------- 203
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           L   +E KT  +QG GNVG   A +  +  AK +A+ + +      +G  +N + +   K
Sbjct: 204 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEG--LNVELIQKNK 261
Query: 334 ITKG-------TIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
              G       T K        P  I    VDI VPAAIE VIR  NA  V+A+++VE A
Sbjct: 262 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGA 321
Query: 387 NGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429
           NGP TP A  +L ++ V+++PDI ANAGGV +SY EW++N+  
Sbjct: 322 NGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQW 364

>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 419

Iteration: 1
 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 173/335 (51%), Gaps = 18/335 (5%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           L+ +  P   D G+  + Q YR  H   + P KGG+R    V   +   LAA MT K + 
Sbjct: 45  LVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAV 104
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
            ++PFGGA GGI +DP   + +ELER+ R++  EL+    +GP  D+  PD     + M+
Sbjct: 105 YDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELV--GLIGPDSDILGPDLGADQQVMA 162
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           W  D Y+ T+GST     G+VTGKP  LGG  GR+ A G G     E L          G
Sbjct: 163 WIMDTYSMTVGST---VPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRR------G 213
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
           L+  +     +VQG G VG   A +  R   + +A+      +   +G ++  + L  Y+
Sbjct: 214 LD--LRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVA-EVLSAYE 270
Query: 334 ITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPA 393
            T G++   P    AP ++   + ++LV AA E  +    A +VQA+ +VE AN  L P 
Sbjct: 271 AT-GSL---PRLDLAPEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPE 326
Query: 394 AHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           A A LL K  L++PD+ +  GG+  SY EW+++++
Sbjct: 327 AEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLN 361

>pdb|1HRD|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  145 bits (366), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 168/345 (48%), Gaps = 26/345 (7%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E + P+  D+G+  +   YR        P KGG+R+A  VN   +K L     +K+S 
Sbjct: 57  VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ 
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           + Y  Y K +G       G++TGK    GG   R  ATG G     E ++ +E       
Sbjct: 175 YMYGQYRKIVGGF---YNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
               +  KT  + GFGNV + AA+      AK + +   D  I   +G     +INY  L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
                 +  ++ Y    G +  P +  +  KVDI++P A +  +    A K+ A   K  
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
           +E AN P T  A   L+++ N+++ P    NAGGV VS FE  +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQN 387

>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 26/345 (7%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E + P+  D+G+  +   YR        P  GG+R+A  VN   +K L     +K+S 
Sbjct: 57  VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ 
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGARELG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           + Y  Y K +G       G++TGK    GG   R  ATG G     E ++ +E       
Sbjct: 175 YMYGQYRKIVGGFYN---GVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
               +  KT  + GFGNV + AA+      AK + +   D  I   +G     +INY  L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
                 +  ++ Y    G +  P +  +  KVDI++P A +  +    A K+ A   K  
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
           +E AN P T  A   L+++ N+++ P    NAGGV VS FE  +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQN 387

>pdb|1AUP|A Chain A, Glutamate Dehydrogenase Length = 449

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 26/345 (7%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E + P+  D+G+  +   YR        P  GG+R+A  VN   +K L     +K+S 
Sbjct: 57  VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSL 116
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ 
Sbjct: 117 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 174
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           + Y  Y K +G       G++TGK    GG   R  ATG G     E ++ +E       
Sbjct: 175 YMYGQYRKIVGGF---YNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHE------- 224
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT----EINYKDL 329
               +  KT  + GFGNV + AA+      AK + +   D  I   +G     +INY  L
Sbjct: 225 -NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYM-L 282
Query: 330 HTYKITKGTIKGYP---GTKSAPTDIMF-DKVDILVPAAIEKVIRKSNADKVQA---KII 382
                 +  ++ Y    G +  P +  +  KVDI++P A +  +    A K+ A   K  
Sbjct: 283 EMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYY 342
Query: 383 VEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLKN 426
           +E AN P T  A   L+++ N+++ P    NAGGV V  FE  +N
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQN 387

>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium Falciparum Glutamate Dehydrogenase 2 Length = 456

Iteration: 1
 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 161/350 (46%), Gaps = 38/350 (10%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +++ + P+  D GE+++ + +R  + +   P KGG+R+   VN   +K L     +KNS 
Sbjct: 67  VIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSL 126
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P GG KGG   DP   +  E+ +  + F   L +  Y+GP  DVPA D     RE+ 
Sbjct: 127 TTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNTDVPAGDIGVGGREIG 184
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           + +  Y K   S      G++TGK +  GG   R  ATG GV   AE ++ +        
Sbjct: 185 YLFGQYKKLKNSFE----GVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKD-------- 232
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG---TEINY---- 326
           L   +ENK  +V G GNV  +         A  L + + +  I+   G    ++NY    
Sbjct: 233 LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDI 292
Query: 327 -----KDLHTYKITKGTIKGYPGTK--SAPTDIMFDKVDILVPAAIEKVIRKSNAD---K 376
                  L  Y     T K +   K  + P DI F       P A +  I +++AD   +
Sbjct: 293 KNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAF-------PCATQNEINENDADLFIQ 345
Query: 377 VQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN 426
            + K+IVE AN P    A   L + N+++ P   ANAGGV VS  E  +N
Sbjct: 346 NKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQN 395

>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase Length = 448

Iteration: 1
 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 153/347 (44%), Gaps = 28/347 (8%)
Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           ++E + P+  D+G+  +   YR        P KGG+R+A  VN   +K L     +K+S 
Sbjct: 58  VIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSL 117
Query: 154 SNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMS 213
           + +P GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ 
Sbjct: 118 TTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIG 175
Query: 214 WFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIG 273
           + Y  Y K +G       G++TGK    GG   R  ATG G+    E ++          
Sbjct: 176 YMYGQYRKIVGGFYN---GVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM----- 227
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG-TEINYKDLHTY 332
                E     V G GNV  +A        A+ +   +    +V + G T+     L   
Sbjct: 228 ---GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEI 284
Query: 333 KITK-GTIKGYPG-------TKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQA---KI 381
           K ++ G +  Y             P  +    VDI +P A +  +    A ++ A   K 
Sbjct: 285 KASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALPCATQNELDVDAAHQLIANGVKA 341
Query: 382 IVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
           + E AN P T  A  +  +  VL  P   ANAGGV  S  E  +N +
Sbjct: 342 VAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAA 388

>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate Dehydrogenase, A Putative Target For Novel Antimalarial Drugs Length = 470

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 154/351 (43%), Gaps = 28/351 (7%)
Query: 97  IQF--PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           IQF   +  D+G     +C+R  + +   P KGG+R+   VN   VK L     +KNS +
Sbjct: 81  IQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLT 140
Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
            +  GG KGG   DP   ++ E+ +  + F  EL +  ++GP  DVPA D     RE+ +
Sbjct: 141 GLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYR--HIGPCTDVPAGDIGVGGREIGY 198
Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEIG 273
            Y  Y K + S N    G +TGK +  GG   R  ATG G V+   E+L +         
Sbjct: 199 LYGQYKKIVNSFN----GTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKS--------- 245
Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV-PDKGTEINYKDLHTY 332
           L   +E +T +V G GNV  +  +       K L + + +  +  P+  T  N + L   
Sbjct: 246 LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDL 305
Query: 333 K-ITKGTIKGYPGTKSAPTDIMFDK-----VDILVPAAIEKVIRKSNADKVQAK---IIV 383
           K   KG IK Y    S       +K       +  P A +  +    A  +Q     ++ 
Sbjct: 306 KEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVG 365
Query: 384 EAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGR 434
           E AN P T  A  +    N++  P   ANAGGV +S  E  +N   S   R
Sbjct: 366 EGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTR 416

>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli Length = 450

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 152/369 (41%), Gaps = 29/369 (7%)
Query: 72  FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
           F +++   R+  ++  +     +++ +  +  D  + ++ + +R    +   P KGG+R+
Sbjct: 41  FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRF 100
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
              VN   +K L    T+KN+ + +P GG KGG   DP   +  E+ R  +    EL + 
Sbjct: 101 HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 159
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
            ++G   DVPA D     RE+  F     K L +   N   + TGK L  GG   R  AT
Sbjct: 160 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 214
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
           G G+    E ++               E     V G GNV  +A        A+ +   +
Sbjct: 215 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 266
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
               +V + G T+     L   K ++ G +  Y             P  +    VDI +P
Sbjct: 267 SSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSV---PVDIALP 323
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
            A +  +    A ++ A   K + E AN P T  A  +  +  VL  P   ANAGGV  S
Sbjct: 324 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 383
Query: 420 YFEWLKNIS 428
             E  +N +
Sbjct: 384 GLEMAQNAA 392

>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source Length = 447

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 152/369 (41%), Gaps = 29/369 (7%)
Query: 72  FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
           F +++   R+  ++  +     +++ +  +  D  + ++ + +R    +   P KGG+R+
Sbjct: 38  FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRF 97
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
              VN   +K L    T+KN+ + +P GG KGG   DP   +  E+ R  +    EL + 
Sbjct: 98  HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 156
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
            ++G   DVPA D     RE+  F     K L +   N   + TGK L  GG   R  AT
Sbjct: 157 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 211
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
           G G+    E ++               E     V G GNV  +A        A+ +   +
Sbjct: 212 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 263
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
               +V + G T+     L   K ++ G +  Y             P  +    VDI +P
Sbjct: 264 SSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALP 320
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
            A +  +    A ++ A   K + E AN P T  A  +  +  VL  P   ANAGGV  S
Sbjct: 321 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 380
Query: 420 YFEWLKNIS 428
             E  +N +
Sbjct: 381 GLEMAQNAA 389

>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain Flexibility In Bacterial Glutamate Dehydrogenases Length = 447

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 151/367 (41%), Gaps = 29/367 (7%)
Query: 72  FTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRY 131
           F +++   R+  ++  +     +++ +  +  D  + ++ + +R    +   P KGG+R+
Sbjct: 38  FLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRF 97
Query: 132 ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKK 191
              VN   +K L    T+KN+ + +P GG KGG   DP   +  E+ R  +    EL + 
Sbjct: 98  HPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR- 156
Query: 192 NYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT 251
            ++G   DVPA D     RE+  F     K L +   N   + TGK L  GG   R  AT
Sbjct: 157 -HLGADTDVPAGDIGVGGREVG-FMAGMMKKLSN---NTACVFTGKGLSFGGSLIRPEAT 211
Query: 252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE 311
           G G+    E ++               E     V G GNV  +A        A+ +   +
Sbjct: 212 GYGLVYFTEAMLKRHGM--------GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD 263
Query: 312 HDTAIVPDKG-TEINYKDLHTYKITK-GTIKGYPG-------TKSAPTDIMFDKVDILVP 362
               +V + G T+     L   K ++ G +  Y             P  +    VDI +P
Sbjct: 264 SSGLVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSL---PVDIALP 320
Query: 363 AAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
            A +  +    A ++ A   K + E AN P T  A  +  +  VL  P   ANAGGV  S
Sbjct: 321 CATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATS 380
Query: 420 YFEWLKN 426
             E  +N
Sbjct: 381 GLEMAQN 387

>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  + S+    F  R DS              T   P  GG R A   
Sbjct: 3   DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 48  QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 297 GREVLGWSESVVH 309

>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  + S+    F  R DS              T   P  GG R A   
Sbjct: 3   DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 48  NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 297 GREVLGWSESVVH 309

>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  + S+    F  R DS              T   P  GG R A   
Sbjct: 4   DSALNWDGE-MTVTRFDSMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 49  NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 298 GREVLGWSESVVH 310

>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 139/373 (37%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  + ++    F  R DS              T   P  GG R A   
Sbjct: 3   DSALNWDGE-MTVTRFDAMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 48  NLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 297 GREVLGWSESVVH 309

>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 133/348 (38%), Gaps = 74/348 (21%)
Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA-----LDVNPDEVKALAALMTYKNSCSN 155
           F R +G + +I+       T   P  GG R A      D   D  K LA  MT K + SN
Sbjct: 18  FDRMTGAHFVIRL----DSTQLGPAAGGTRAAQYSQLADALTDAGK-LAGAMTLKMAVSN 72
Query: 156 VPFGGAKGGI-------RIDPSKYNNRELERITRKFA--LELIKKNYVGPGIDVPAPDYN 206
           +P GG K  I        IDPS +      RI R  A  ++ +  NY         PD N
Sbjct: 73  LPMGGGKSVIALPAPRHSIDPSTW-----ARILRIHAENIDKLSGNY------WTGPDVN 121
Query: 207 TSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE 266
           T++ +M    D                V G+ L  GG       T  GVF A +  V + 
Sbjct: 122 TNSADMDTLNDTTE------------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHR 169
Query: 267 EYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY 326
                 GL   ++  T +VQG G VG   A                  ++  + G ++  
Sbjct: 170 ------GL-GSLDGLTVLVQGLGAVGGSLA------------------SLAAEAGAQLLV 204
Query: 327 KDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA 386
            D  T ++      G+  T  A  D++    D+  P A+  VI    A  +   ++  AA
Sbjct: 205 ADTDTERVAHAVALGH--TAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAA 262
Query: 387 NGPLT-PAAHAMLLKKNVLIIPDIFANAGG----VTVSYFEWLKNISH 429
           N  +   AA  +L  + +L  PD  ANAGG    V      W +++ H
Sbjct: 263 NNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVH 310

>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  +  +    F  R DS              T   P  GG R A   
Sbjct: 3   DSALNWDGE-MTVTRFDKMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 47
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 48  QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 101
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 102 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 143
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 144 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 191
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 192 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 236
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 237 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 296
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 297 GREVLGWSESVVH 309

>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  + S     F  R DS              T   P  GG R A   
Sbjct: 4   DSALNWDGE-MTVTRFDSKTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 49  QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 298 GREVLGWSESVVH 310

>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 138/373 (36%), Gaps = 85/373 (22%)
Query: 76  DIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA--- 132
           D AL  +G  M +  +  +    F  R DS              T   P  GG R A   
Sbjct: 4   DSALNWDGE-MTVTRFDKMTGAHFVIRLDS--------------TQLGPAAGGTRAAQYS 48
Query: 133 --LDVNPDEVKALAALMTYKNSCSNVPFGGAKGGI-------RIDPSKYNNRELERITRK 183
              D   D  K LA  MT K + SN+P GG K  I        IDPS +      RI R 
Sbjct: 49  QLADALTDAGK-LAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW-----ARILRI 102
Query: 184 FA--LELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL 241
            A  ++ +  NY         PD NT++ +M    D                V G+ L  
Sbjct: 103 HAENIDKLSGNY------WTGPDVNTNSADMDTLNDTTE------------FVFGRSLER 144
Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR 301
           GG       T  GVF A +  V +       GL   ++  T +VQG G VG   A     
Sbjct: 145 GGAGSSAFTTAVGVFEAMKATVAHR------GL-GSLDGLTVLVQGLGAVGGSLA----- 192
Query: 302 GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILV 361
                        ++  + G ++   D  T ++      G+  T  A  D++    D+  
Sbjct: 193 -------------SLAAEAGAQLLVADTDTERVAHAVALGH--TAVALEDVLSTPCDVFA 237
Query: 362 PAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGG----V 416
           P A+  VI    A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG    V
Sbjct: 238 PCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV 297
Query: 417 TVSYFEWLKNISH 429
                 W +++ H
Sbjct: 298 GREVLGWSESVVH 310

>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A Psychrophilic Bacterium Sporosarcina Psychrophila. Length = 364

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 124/336 (36%), Gaps = 56/336 (16%)
Query: 86  MLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKA--- 142
           M  Q+Y  L+  Q    + SG   +I      H T   P  GG R     + +E      
Sbjct: 7   MEHQDYEQLVICQ---DKASGLKAIIAI----HDTTLGPALGGTRMWTYASEEEAIEDAL 59
Query: 143 -LAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVP 201
            LA  MTYKN+ + +  GG K  I  +P    N E+ R   ++ +E +   Y+       
Sbjct: 60  RLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRY-IEGLNGRYI------T 112
Query: 202 APDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEI 261
           A D  T+  +M              N+     VTG     G        T  G++   + 
Sbjct: 113 AEDVGTTEADMDLI-----------NLET-DYVTGTSAGAGSSGNPSPVTAYGIYYGMKA 160
Query: 262 LVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG 321
                    E   +  +  KT  VQG GNV +    Y     AK +              
Sbjct: 161 AAK------EAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLII------------- 201
Query: 322 TEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKI 381
           T+IN + +         +  +  T     +I   + DI  P A+  +I      +++AK+
Sbjct: 202 TDINEEAVQR------AVDAFGATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKV 255
Query: 382 IVEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGV 416
           I  +AN  L    H  L+ +  ++  PD   N+GGV
Sbjct: 256 IAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGV 291

>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus Length = 364

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 114/304 (37%), Gaps = 49/304 (16%)
Query: 118 HCTHKSPTKGGIRY----ALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYN 173
           H T   P  GG R     A +   ++   LA  MTYKN+ + +  GG K  I  DP    
Sbjct: 32  HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 174 NRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGM 233
           N ++ R   +F ++ +   Y      + A D  T+  +M   +    +T   T I+    
Sbjct: 92  NEDMFRALGRF-IQGLNGRY------ITAEDVGTTVDDMDLIHQ---ETDYVTGISPAFG 141
Query: 234 VTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGF 293
            +G P            T  GV+   +     E +  +      +E     VQG GNV  
Sbjct: 142 SSGNP---------SPVTAYGVYRGMKAAA-KEAFGSD-----SLEGLAVSVQGLGNV-- 184
Query: 294 HAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM 353
                    +A C  +      +V    T++N   +      +G          AP  I 
Sbjct: 185 --------AKALCKKLNTEGAKLVV---TDVNKAAVSAAVAEEGA------DAVAPNAIY 227
Query: 354 FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKK-NVLIIPDIFAN 412
               DI  P A+  V+      +++AK+I  +A+  L    H   L +  ++  PD   N
Sbjct: 228 GVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVIN 287
Query: 413 AGGV 416
           AGGV
Sbjct: 288 AGGV 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	0.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	1e-174
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	1e-174
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	1e-171
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	1e-168
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	1e-165
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	1e-162
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	1e-162
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	1e-103
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	2e-94
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	1e-88
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	1e-87
2yfg_A	447	NADP-specific glutamate dehydrogenase; oxidoreduct	1e-83
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	1e-83
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score =  604 bits (1558), Expect = 0.0
 Identities = 236/499 (47%), Positives = 331/499 (66%), Gaps = 6/499 (1%)

Query: 38  DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEI 97
            +++P FF+ VE +F R    +  +    ++ R+  ++        I+ +++  + +L +
Sbjct: 3   REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRV-RSILRIIKPCNHVLSL 61

Query: 98  QFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVP 157
            FP RRD G +E+I+ YR  H  H++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VP
Sbjct: 62  SFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVP 121

Query: 158 FGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYD 217
           FGGAK G++I+P  Y + ELE+ITR+F +EL KK ++GPG+DVPAPD +T  REMSW  D
Sbjct: 122 FGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIAD 181

Query: 218 AYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC 277
            YA T+G  +INA   VTGKP+  GGI GR SATGRGVF   E  +N   YM  +G+ P 
Sbjct: 182 TYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPG 241

Query: 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG 337
             +KT++VQGFGNVG H+ RY  R  AKC+ + E D +I    G  I+ K+L  +K+  G
Sbjct: 242 FGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDG--IDPKELEDFKLQHG 299

Query: 338 TIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAM 397
           TI G+P  K     I+    DIL+PAA EK + KSNA +V+AKII E ANGP TP A  +
Sbjct: 300 TILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKI 359

Query: 398 LLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSD 457
            L++N+++IPD++ NAGGVTVSYFEWL N++H S GR++F Y+++ +  LL S+  SL  
Sbjct: 360 FLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLER 419

Query: 458 TFNKK---IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRN 514
            F K    I I  +A ++DRIS A+EKDIV S L ++M+R+ R I+  A K +  LDLR 
Sbjct: 420 KFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRT 479

Query: 515 AAYCSALFKIFKTYEEAGL 533
           AAY +A+ K+F+ Y EAG+
Sbjct: 480 AAYVNAIEKVFRVYNEAGV 498

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score =  498 bits (1284), Expect = e-174
 Identities = 147/494 (29%), Positives = 232/494 (46%), Gaps = 84/494 (17%)

Query: 42  PGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
              +E V     RA Q + I E                      +  ++    ++E+  P
Sbjct: 3   ADPYEIVIKQLERAAQYMEISE--------------------EALEFLKRPQRIVEVTIP 42

Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
              D G  ++   +R  H   + PTKGGIR+  +     VKALAA MT+K +  ++P+GG
Sbjct: 43  VEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGG 102

Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
            KGGI +DP K ++RE ER+ R +   +     + P  D+PAPD  T+ + M+W  D Y 
Sbjct: 103 GKGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDIPAPDVYTNPQIMAWMMDEYE 160

Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
                    A G++TGKPL +GG  GR  AT RG            E    +G +  ++ 
Sbjct: 161 TISR-RKTPAFGIITGKPLSIGGSLGRIEATARGASYTI------REAAKVLGWDT-LKG 212

Query: 281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI 339
           KT  +QG+GN G++ A+        K +A+ +    I    G  +N  ++  +K   G++
Sbjct: 213 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDG--LNADEVLKWKNEHGSV 270

Query: 340 KGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           K +PG  +    +++  +VD+L PAAIE+VI K NAD ++AKI+ E ANGP+TP A  +L
Sbjct: 271 KDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEIL 330

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
            +K +L IPD   NAGGVTVSYFEW++NI+        +                     
Sbjct: 331 FEKGILQIPDFLCNAGGVTVSYFEWVQNITG-----YYW--------------------- 364

Query: 459 FNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC 518
                                  + V+  L   M +A  D+   A++    + +R+AAY 
Sbjct: 365 ---------------------TIEEVRERLDKKMTKAFYDVYNIAKE--KNIHMRDAAYV 401

Query: 519 SALFKIFKTYEEAG 532
            A+ ++++   + G
Sbjct: 402 VAVQRVYQAMLDRG 415

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score =  495 bits (1278), Expect = e-174
 Identities = 168/495 (33%), Positives = 253/495 (51%), Gaps = 87/495 (17%)

Query: 42  PGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFP 100
              +E     F+RA   + +                       +  +++    +L ++FP
Sbjct: 3   KSLYEMAVEQFNRAASLMDLES--------------------DLAEVLRRPKRVLIVEFP 42

Query: 101 FRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGG 160
            R D G  E+   YR  H   + P KGGIRY  DV  DEVKALA  MT+K +  N+PFGG
Sbjct: 43  VRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGG 102

Query: 161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYA 220
            KGG+R+DP K + RELER++R+F  E+  +  +GP  D+PAPD NT+A  ++W+ D Y 
Sbjct: 103 GKGGVRVDPKKLSRRELERLSRRFFREI--QVIIGPYNDIPAPDVNTNADVIAWYMDEYE 160

Query: 221 KTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN 280
             +G      LG+VTGKP+ LGG +GRE ATGRGV   A         M  +G++P  + 
Sbjct: 161 MNVGH---TVLGIVTGKPVELGGSKGREEATGRGVKVCA------GLAMDVLGIDP--KK 209

Query: 281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI 339
            T  VQGFGNVG  AA    +   +K +A+ +    I   +G   + ++L  YK   GT+
Sbjct: 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG--FDVEELIRYKKEHGTV 267

Query: 340 KGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
             YP  +     +++   VDILVPAA+E  I   NA++++AK +VE ANGP TP A  +L
Sbjct: 268 VTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEIL 327

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
            ++ +L++PDI ANAGGVTVSYFEW++++         +                     
Sbjct: 328 SRRGILVVPDILANAGGVTVSYFEWVQDLQS-----FFW--------------------- 361

Query: 459 FNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC 518
                                + D V+++L   M+ A  D+++  EK    +D+R AAY 
Sbjct: 362 ---------------------DLDQVRNALEKMMKGAFNDVMKVKEK--YNVDMRTAAYI 398

Query: 519 SALFKIFKTYEEAGL 533
            A+ ++    ++ G+
Sbjct: 399 LAIDRVAYATKKRGI 413

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score =  491 bits (1266), Expect = e-171
 Identities = 168/512 (32%), Positives = 244/512 (47%), Gaps = 89/512 (17%)

Query: 27  HKIPERLKDVPD---KENPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRN 82
            + P  +K  P     ++ G +E       R V  L                        
Sbjct: 11  SQDPNSMKSEPLSYLGKDGGPWEIFTEQVDRVVPYLGRLA-------------------- 50

Query: 83  GIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKA 142
            +   ++    +L +  P R D G     + YR HH T + P KGG+RY  +V   EV A
Sbjct: 51  PLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMA 110

Query: 143 LAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA 202
           LA  MT KN+   +P+GG KGGIR+DP K +  ELER+TR++  E+     +GP  D+PA
Sbjct: 111 LAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGI--LLGPDRDIPA 168

Query: 203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEIL 262
           PD NT  REM+W  D Y+  +G       G+VTGKP+ LGG  GR  ATGRGVF  A   
Sbjct: 169 PDVNTGEREMAWMMDTYSMNVGR---TVPGVVTGKPIALGGSLGRRDATGRGVFITA--- 222

Query: 263 VNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT 322
                   +IGL+   E     +QGFGNVG  AAR F    A+ +A+ +H   +  + G 
Sbjct: 223 ---AAAAEKIGLQV--EGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG- 276

Query: 323 EINYKDLHTYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKI 381
            I+  DL  +    G ++GYP  +     D     V+ LVPAA+EK I + NA +++A+I
Sbjct: 277 -IDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARI 335

Query: 382 IVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK 441
           + E ANGP TPAA  +LL+K VL++PD+ ANAGGVTVSYFEW+++ +        +    
Sbjct: 336 VAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNS-----YFW---- 386

Query: 442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILE 501
                                                  ++ + + L   ++ A   + +
Sbjct: 387 --------------------------------------TEEEINARLERVLRNAFEAVWQ 408

Query: 502 YAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
            A++   K+ LR AAY  A  ++ +     GL
Sbjct: 409 VAQE--KKIPLRTAAYVVAATRVLEARALRGL 438

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score =  480 bits (1239), Expect = e-168
 Identities = 147/502 (29%), Positives = 223/502 (44%), Gaps = 90/502 (17%)

Query: 39  KENPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEI 97
            +      + +     A + L                         +  L++    ++EI
Sbjct: 2   TDTLNPLVAAQEKVRIACEKLGCDP--------------------AVYELLKEPQRVIEI 41

Query: 98  QFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVP 157
             P + D G  ++ + +R  H +   P+KGG+R+  +VN DEVKAL+  MT+K     +P
Sbjct: 42  SIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLP 101

Query: 158 FGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYD 217
           +GG KGGI +DP++ + RELE+++R +   L K  Y+G  ID+PAPD NT+ + MSWF D
Sbjct: 102 YGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIPAPDVNTNGQIMSWFVD 159

Query: 218 AYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC 277
            Y K  G      +G  TGKP+  GG  GR  ATG GV           E     G++  
Sbjct: 160 EYVKLNGER--MDIGTFTGKPVAFGGSEGRNEATGFGVAVVV------RESAKRFGIKM- 210

Query: 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDT-----AIVPDKGTEINYKDLHTY 332
            E+    VQGFGNVG    +   R   K  AI E D      A+  + G  I++K+L  Y
Sbjct: 211 -EDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENG--IDFKELLAY 267

Query: 333 KITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
           K    T+ G+PG +     +    + DI+VPAA+E VI    A  + AK++ EAANGP T
Sbjct: 268 KEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTT 327

Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSI 451
           P    +L ++ + + PDI  N+GGV VSY+EW++N          +   +          
Sbjct: 328 PEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQY-----GYYWTEAE---------- 372

Query: 452 DTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                                           V+      M +A + +   A++    + 
Sbjct: 373 --------------------------------VEEKQEADMMKAIKGVFAVADE--YNVT 398

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           LR A Y  A+  I    +  G 
Sbjct: 399 LREAVYMYAIKSIDVAMKLRGW 420

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score =  474 bits (1222), Expect = e-165
 Identities = 147/496 (29%), Positives = 228/496 (45%), Gaps = 85/496 (17%)

Query: 39  KENPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEI 97
           KE    F S +     A++ L  P                      +  LM+    +L +
Sbjct: 12  KEALNLFLSTQTIIKEALRKLGYPG--------------------DMYELMKEPQRMLTV 51

Query: 98  QFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVP 157
           + P + D+G  ++   YR  H     PTKGG+R+  +VN ++VKAL+  MT K   +N+P
Sbjct: 52  RIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLP 111

Query: 158 FGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYD 217
           +GG KGGI  DP   +  ELER++R +   + +   VGP  D+PAPD  T+++ M+W  D
Sbjct: 112 YGGGKGGIICDPRTMSFGELERLSRGYVRAISQ--IVGPTKDIPAPDVYTNSQIMAWMMD 169

Query: 218 AYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC 277
            Y++       ++ G +TGKPL LGG +GRE+AT +GV    E      E + + G++  
Sbjct: 170 EYSRL---REFDSPGFITGKPLVLGGSQGRETATAQGVTICIE------EAVKKKGIKL- 219

Query: 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG 337
            +N   I+QGFGN G   A++     AK + I + +  +    G  ++   L   + + G
Sbjct: 220 -QNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDG--LDIPYLLDKRDSFG 276

Query: 338 TIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAM 397
            +           +++    DILVPAAI   I   NA  +QA I+VE ANGP T  A  +
Sbjct: 277 MVTNLFTDVITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGPTTIDATKI 336

Query: 398 LLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSD 457
           L ++ VL++PDI A+AGGVTVSYFEW++N          +  ++                
Sbjct: 337 LNERGVLLVPDILASAGGVTVSYFEWVQNNQ-----GYYWSEEE---------------- 375

Query: 458 TFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAY 517
                                     V   L   M  +   I + A    +K+D+R AAY
Sbjct: 376 --------------------------VAEKLRSVMVSSFETIYQTAAT--HKVDMRLAAY 407

Query: 518 CSALFKIFKTYEEAGL 533
            + + K  +     G 
Sbjct: 408 MTGIRKSAEASRFRGW 423

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score =  467 bits (1204), Expect = e-162
 Identities = 148/502 (29%), Positives = 223/502 (44%), Gaps = 91/502 (18%)

Query: 40  ENPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           E  GF E V  Y  + V+    PE                        ++     +L + 
Sbjct: 2   ERTGFLEYVLNYVKKGVELGGFPE--------------------DFYKILSRPRRVLIVN 41

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
            P R D G +E+ + YR  HC    P KGG+R+  +V   +  ALA LMT KNS + +P+
Sbjct: 42  IPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPY 101

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAKG +R+DP K + RELE ++R +A  +     +G  +D+PAPD  T+A+ M+W  D 
Sbjct: 102 GGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPAPDVGTNAQIMAWMVDE 159

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           Y+K       N  G+ T KP  L G   RE ATG GV  A        E   ++      
Sbjct: 160 YSKI---KGYNVPGVFTSKPPELWGNPVREYATGFGVAVAT------REMAKKLWGGI-- 208

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
           E KT  +QG GNVG   A +  +  AK +A+ + +      +G  +N + +   K   G 
Sbjct: 209 EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEG--LNVELIQKNKGLTGP 266

Query: 339 I-----KGYPGTK--SAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT 391
                       +    P  I    VDI VPAAIE VIR  NA  V+A+++VE ANGP T
Sbjct: 267 ALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTT 326

Query: 392 PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSI 451
           P A  +L ++ V+++PDI ANAGGV +SY EW++N+         +  ++          
Sbjct: 327 PEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQW-----YIWDEEE---------- 371

Query: 452 DTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLD 511
                                            +  L + M      + +  ++ +    
Sbjct: 372 --------------------------------TRKRLENIMVNNVERVYKRWQR-EKGWT 398

Query: 512 LRNAAYCSALFKIFKTYEEAGL 533
           +R+AA  +AL +I+   +  G 
Sbjct: 399 MRDAAIVTALERIYNAMKIRGW 420

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score =  467 bits (1204), Expect = e-162
 Identities = 124/495 (25%), Positives = 205/495 (41%), Gaps = 88/495 (17%)

Query: 40  ENPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           E+PG +++   +  RA++   +                        +  + +   L+ + 
Sbjct: 10  EDPGLWDTYLEWLERALKVAGVHP--------------------TTLEYLAHPKRLVTLS 49

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
            P   D G+  + Q YR  H   + P KGG+R    V   +   LAA MT K +  ++PF
Sbjct: 50  LPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPF 109

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGA GGI +DP   + +ELER+ R++  EL+    +GP  D+  PD     + M+W  D 
Sbjct: 110 GGAAGGIAVDPKGLSPQELERLVRRYTAELVG--LIGPDSDILGPDLGADQQVMAWIMDT 167

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
           Y+ T+GST     G+VTGKP  LGG  GR+ A G G           E      GL+   
Sbjct: 168 YSMTVGST---VPGVVTGKPHALGGSEGRDDAAGLGALLVL------EALAKRRGLDL-- 216

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT 338
                +VQG G VG   A +  R   + +A+      +   +G  ++  ++ +     G+
Sbjct: 217 RGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEG--LDVAEVLSAYEATGS 274

Query: 339 IKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAML 398
           +           ++   + ++LV AA E  +    A +VQA+ +VE AN  L P A A L
Sbjct: 275 LPRLDLAPE---EVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYL 331

Query: 399 LKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT 458
           L K  L++PD+ +  GG+  SY EW+++++        +  ++                 
Sbjct: 332 LGKGALVVPDLLSGGGGLLASYLEWVQDLNM-----FFWSPEE----------------- 369

Query: 459 FNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC 518
                                    V+      + R    +   AE+    LDLR  A  
Sbjct: 370 -------------------------VRERFETRVARVVDAVCRRAER--GGLDLRMGALA 402

Query: 519 SALFKIFKTYEEAGL 533
            AL ++ +     G+
Sbjct: 403 LALERLDEATRLRGV 417

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score =  314 bits (806), Expect = e-103
 Identities = 82/445 (18%), Positives = 128/445 (28%), Gaps = 109/445 (24%)

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYAL----DVNPDEVKALAALMTYK 150
              Q  F +D      ++     H T   P  GG R       +   ++   LA  MTYK
Sbjct: 11  DYEQLVFCQDEASG--LKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYK 68

Query: 151 NSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAR 210
           N+ + +  GG K  I  DP    N ++ R   +F   L        G  + A D  T+  
Sbjct: 69  NAAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGLN-------GRYITAEDVGTTVD 121

Query: 211 EMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMC 270
           +M   +                 VTG     G        T  GV+         +    
Sbjct: 122 DMDLIHQET------------DYVTGISPAFGSSGNPSPVTAYGVYRGM------KAAAK 163

Query: 271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH 330
           E      +E     VQG GNV     +      AK +    +  A+              
Sbjct: 164 EAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-------------- 209

Query: 331 TYKITKGTIKGYPGTKS-APTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAA-NG 388
                        G  + AP  I     DI  P A+  V+      +++AK+I  +A N 
Sbjct: 210 ------SAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQ 263

Query: 389 PLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLL 448
              P     L +  ++  PD   NAGGV     E              +GY+        
Sbjct: 264 LKDPRHGKYLHELGIVYAPDYVINAGGVINVADEL-------------YGYN-------- 302

Query: 449 SSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDN 508
                                    R     +           +  +   I   +++  +
Sbjct: 303 -----------------------RTRAMKRVDG----------IYDSIEKIFAISKR--D 327

Query: 509 KLDLRNAAYCSALFKIFKTYEEAGL 533
            +    AA   A  +I K  +    
Sbjct: 328 GVPSYVAADRMAEERIAKVAKARSQ 352

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score =  290 bits (746), Expect = 2e-94
 Identities = 80/428 (18%), Positives = 125/428 (29%), Gaps = 105/428 (24%)

Query: 112 QCYRCHHCTHKSPTKGGIRYALDVNPDE----VKALAALMTYKNSCSNVPFGGAKGGIRI 167
                   T   P  GG R A   N  +       LA  MT K + SN+P GG K  I +
Sbjct: 24  HFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIAL 83

Query: 168 DPSKY--NNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGS 225
              ++  +     RI R  A  +      G       PD NT++ +M    D        
Sbjct: 84  PAPRHSIDPSTWARILRIHAENI--DKLSGN--YWTGPDVNTNSADMDTLNDTT------ 133

Query: 226 TNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIV 285
                   V G+ L  GG       T  GVF A +        +   GL   ++  T +V
Sbjct: 134 ------EFVFGRSLERGGAGSSAFTTAVGVFEAMK------ATVAHRGLGS-LDGLTVLV 180

Query: 286 QGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT 345
           QG G VG   A       A+ L        +                            T
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVA--------------------HAVALGHT 220

Query: 346 KSAPTDIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHA-MLLKKNVL 404
             A  D++    D+  P A+  VI    A  +   ++  AAN  +   A + +L  + +L
Sbjct: 221 AVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 280

Query: 405 IIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIR 464
             PD  ANAGG        +             G+ +                  +++  
Sbjct: 281 YAPDFVANAGGAIHLVGREV------------LGWSES---------------VVHERA- 312

Query: 465 IQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKI 524
                     I +                     + E ++   + +    AA   A  + 
Sbjct: 313 --------VAIGDTL-----------------NQVFEISDN--DGVTPDEAARTLAGRRA 345

Query: 525 FKTYEEAG 532
            +      
Sbjct: 346 REASTTTA 353

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449

 Score =  279 bits (715), Expect = 1e-88
 Identities = 114/410 (27%), Positives = 176/410 (42%), Gaps = 47/410 (11%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           K+        E  F + V+    E   S+      D         ++  M     ++E +
Sbjct: 13  KKYAD-----EPEFVQTVE----EVLSSLG--PVVDAHPEYEEVALLERMVIPERVIEFR 61

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
            P+  D+G+  +   YR        P KGG+R+A  VN   +K L     +K+S + +P 
Sbjct: 62  VPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPM 121

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ + Y  
Sbjct: 122 GGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIGYMYGQ 179

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEIGLEPC 277
           Y K          G++TGK    GG   R  ATG G V+    ++ +  +          
Sbjct: 180 YRKI---VGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND---------T 227

Query: 278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK---- 333
           +  KT  + GFGNV + AA+      AK + +   D  I   +G  I  ++   Y     
Sbjct: 228 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEG--ITTEEKINYMLEMR 285

Query: 334 -ITKGTIKGYPGTKSA-------PTDIMFDKVDILVPAAIEKVIRKSNADKVQA---KII 382
              +  ++ Y             P      KVDI++P A +  +    A K+ A   K  
Sbjct: 286 ASGRNKVQDYADKFGVQFFPGEKPWGQ---KVDIIMPCATQNDVDLEQAKKIVANNVKYY 342

Query: 383 VEAANGPLTPAAHAMLLKKN-VLIIPDIFANAGGVTVSYFEWLKNISHSS 431
           +E AN P T  A   L+++  +++ P    NAGGV VS FE  +N    S
Sbjct: 343 IEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470

 Score =  277 bits (710), Expect = 1e-87
 Identities = 94/349 (26%), Positives = 150/349 (42%), Gaps = 28/349 (8%)

Query: 95  LEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           ++ +  +  D+G     +C+R  + +   P KGG+R+   VN   VK L     +KNS +
Sbjct: 81  IQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLT 140

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
            +  GG KGG   DP   ++ E+ +  + F  EL +  ++GP  DVPA D     RE+ +
Sbjct: 141 GLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYR--HIGPCTDVPAGDIGVGGREIGY 198

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGL 274
            Y  Y K + S N    G +TGK +  GG   R  ATG G+           E +  + +
Sbjct: 199 LYGQYKKIVNSFN----GTLTGKNVKWGGSNLRVEATGYGLVYFV------LEVLKSLNI 248

Query: 275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK- 333
              +E +T +V G GNV  +  +       K L + + +  +    G    +++L     
Sbjct: 249 P--VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNG--FTHENLEFLID 304

Query: 334 ---ITKGTIKGY----PGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNADKVQA---KII 382
                KG IK Y       K  P +  +     +  P A +  +    A  +Q     ++
Sbjct: 305 LKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILV 364

Query: 383 VEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS 431
            E AN P T  A  +    N++  P   ANAGGV +S  E  +N   S 
Sbjct: 365 GEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSH 413

>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447

 Score =  265 bits (680), Expect = 1e-83
 Identities = 98/407 (24%), Positives = 161/407 (39%), Gaps = 44/407 (10%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           K +P      +  F +AV+    E   ++    F +++   R+  ++  +     +++ +
Sbjct: 16  KRDPN-----QTEFAQAVR----EVMTTLWP--FLEQNPKYRQMSLLERLVEPERVIQFR 64

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
             +  D  + ++ + +R    +   P KGG+R+   VN   +K L    T+KN+ + +P 
Sbjct: 65  VVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPM 124

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GG KGG   DP   +  E+ R  +    EL +  ++G   DVPA D     RE+ +    
Sbjct: 125 GGGKGGSDFDPKGKSEGEVMRFCQALMTELYR--HLGADTDVPAGDIGVGGREVGFMAGM 182

Query: 219 YAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM 278
             K   +T      + TGK L  GG   R  ATG G+          E  +   G+    
Sbjct: 183 MKKLSNNTA----CVFTGKGLSFGGSLIRPEATGYGLVYFT------EAMLKRHGMG--F 230

Query: 279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-- 336
           E     V G GNV  +A        A+ +   +    +V + G     + L      K  
Sbjct: 231 EGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG--FTKEKLARLIEIKAS 288

Query: 337 --GTIKGYPGTKSA-------PTDIMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVE 384
             G +  Y             P  +    VDI +P A +  +    A ++ A   K + E
Sbjct: 289 RDGRVADYAKEFGLVYLEGQQPWSL---PVDIALPCATQNELDVDAAHQLIANGVKAVAE 345

Query: 385 AANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS 431
            AN P T  A  +  +  VL  P   ANAGGV  S  E  +N +   
Sbjct: 346 GANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG 392

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456

 Score =  265 bits (681), Expect = 1e-83
 Identities = 110/443 (24%), Positives = 171/443 (38%), Gaps = 79/443 (17%)

Query: 97  IQF--PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCS 154
           IQF  P+  D GE+++ + +R  + +   P KGG+R+   VN   +K L     +KNS +
Sbjct: 68  IQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSLT 127

Query: 155 NVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSW 214
            +P GG KGG   DP   +  E+ +  + F   L +  Y+GP  DVPA D     RE+ +
Sbjct: 128 TLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNTDVPAGDIGVGGREIGY 185

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRG-VFTAAEILVNNEEYMCEIG 273
            +  Y K   S      G++TGK +  GG   R  ATG G V+ A  +L +  +      
Sbjct: 186 LFGQYKKLKNSFE----GVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLND------ 235

Query: 274 LEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK 333
               +ENK  +V G GNV  +         A  L + + +  I+   G     + L+   
Sbjct: 236 ---NLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNG--FTKEQLNYIM 290

Query: 334 ITK----GTIKGY----PGTKSAPTDIMFD-KVDILVPAAIEKVIRKSNAD---KVQAKI 381
             K      +K Y       K       ++   DI  P A +  I +++AD   + + K+
Sbjct: 291 DIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKM 350

Query: 382 IVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDK 441
           IVE AN P    A   L + N+++ P   ANAGGV VS  E  +N               
Sbjct: 351 IVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTH------- 403

Query: 442 EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILE 501
                                                         L + M+        
Sbjct: 404 ----------------------------------------QETDMKLQNIMKSIYEQCHN 423

Query: 502 YAEKSDNKLDLRNAAYCSALFKI 524
            ++   N+ DL   A  +   K+
Sbjct: 424 TSKIYLNESDLVAGANIAGFLKV 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 70/438 (15%), Positives = 130/438 (29%), Gaps = 111/438 (25%)

Query: 16  KKNDGSNPQSGHKIPERLKDVPDKENPGFFESVEYYFHRA------VQN--LIPEFD--- 64
             N  S       I  R+  +  +      +S  Y           VQN      F+   
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSC 266

Query: 65  ---VSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTH 121
              ++ R ++ TD   A     I        SL         D  +  L++   C     
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI--------SLDHHSMTLTPDEVKSLLLKYLDCR--PQ 316

Query: 122 KSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRE-LERI 180
             P     R  L  NP  +  +A  +               G    D  K+ N + L  I
Sbjct: 317 DLP-----REVLTTNPRRLSIIAESI-------------RDGLATWDNWKHVNCDKLTTI 358

Query: 181 TRKF--ALE--LIKKNYVGPGI---DVPAPDYNTSAREMSWFYDAYAKTLGSTN-INALG 232
                  LE    +K +    +       P   T    + WF    +  +   N ++   
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 233 MVTGKP----LFLGGIRGRESATGRGVFTAAEILVNN----EEYMCEIGLEPCMENKTYI 284
           +V  +P    + +  I           +     +V++    + +  +  + P ++   Y 
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YF 473

Query: 285 VQGFGNVGFHAAR--------YFRRG-------RAKCLAIVEHDTAIVPDKGTEIN-YKD 328
              + ++G H            FR           K    + HD+      G+ +N  + 
Sbjct: 474 ---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSILNTLQQ 526

Query: 329 LHTYK--ITKGTIKGYPGTKSAPTDIMFDKV--DIL--VPAAIEKVIRKSNADKVQAKII 382
           L  YK  I                D  ++++   IL  +P   E +I     D ++  I 
Sbjct: 527 LKFYKPYICD-------------NDPKYERLVNAILDFLPKIEENLICSKYTDLLR--IA 571

Query: 383 VEAANGPLTPAAHAMLLK 400
           + A +  +   AH  + +
Sbjct: 572 LMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 8e-07
 Identities = 83/592 (14%), Positives = 164/592 (27%), Gaps = 214/592 (36%)

Query: 5   NKKKNDGSNNKKKNDGSNPQSGHKIPERLKDVPDKEN------PGFFESV---EYYFHRA 55
           ++  ND     K N  S  Q   K+ + L ++   +N       G  ++    +      
Sbjct: 117 DRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 56  VQNLIPEFDV---SIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQF--PFRRDSGEYEL 110
           VQ  +  F +   +++     +  + + +  +  +  N++S  +       R  S + EL
Sbjct: 176 VQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 111 --IQCYRCHHCTHKSPTKGGIRYAL----DV-NPDEVKALA----ALMTYKNSCSNVPFG 159
             +   + +               L    +V N     A       L+T +       F 
Sbjct: 235 RRLLKSKPY------------ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDF- 280

Query: 160 GAKGGIRIDPSKYNNRELERITRKF----ALELIKKNYVGPGI-DVPAPDYNTSAREMSW 214
                  +  +   +  L+  +          L+ K Y+     D+P        RE+  
Sbjct: 281 -------LSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLP--------REV-- 322

Query: 215 FYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNN-------EE 267
                              +T  P  L  I              AE + +        + 
Sbjct: 323 -------------------LTTNPRRLSII--------------AESIRDGLATWDNWKH 349

Query: 268 YMCE---IGLEPCMEN-KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI------- 316
             C+     +E  +   +    +          + F R     L++      I       
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR----------KMFDR-----LSVFPPSAHIPTILLSL 394

Query: 317 ----VPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRKS 372
               V      +    LH Y + +   K    T S P  I  +             ++  
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISIP-SIYLE-------------LKVK 438

Query: 373 NADKVQA-KIIVEAANGP-------LTP-----------AAH--AMLLKKNVLIIPDIFA 411
             ++    + IV+  N P       L P             H   +   + + +   +F 
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 412 NAGGVTVSYFEWLKN-ISHSSLGRMSFG-----------YDKEISD------LLLSSIDT 453
           +        F +L+  I H S    + G           Y   I D       L+++I  
Sbjct: 499 D--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 454 SLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK 505
                F  K         E+ +  +   D+++ +L          I E A K
Sbjct: 551 -----FLPK--------IEENLICSKYTDLLRIAL----MAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 75/520 (14%), Positives = 132/520 (25%), Gaps = 197/520 (37%)

Query: 34  KDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSS 93
           KDV D          E      + ++I   D      +       L      M+ +    
Sbjct: 36  KDVQDMPKS-ILSKEE------IDHIIMSKDAVSGTLRLFW---TLLSKQEEMVQKFVEE 85

Query: 94  LLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSC 153
           +L I + F     + E  Q           P+     Y    +            Y +  
Sbjct: 86  VLRINYKFLMSPIKTEQRQ-----------PSMMTRMYIEQRDR----------LYND-- 122

Query: 154 SNVPFGGAKGGIRIDPSKYN-NRELERIT--RKFALELIKKNYVGPGIDVPAPDYNTSAR 210
            N  F           +KYN +R  +     R+  LEL     V   ID           
Sbjct: 123 -NQVF-----------AKYNVSRL-QPYLKLRQALLELRPAKNVL--ID----------- 156

Query: 211 EMSWFYDAYAKTLGSTNINALGMV-TGKP-LFLGGIR--GRESATGRGVF--------TA 258
                                G++ +GK  + L        +      +F        + 
Sbjct: 157 ---------------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 259 AEIL--VNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTA 315
             +L  +    Y  +       ++ + I     ++     R  + +    CL ++ +   
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--- 252

Query: 316 IVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD-KVDILVPAAIEKVIR-KSN 373
            V +             K                    F+    IL+        R K  
Sbjct: 253 -VQNA------------KAWN----------------AFNLSCKILL------TTRFKQV 277

Query: 374 ADKVQA----KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH 429
            D + A     I ++  +  LTP          V     +             +L +   
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD--------EVK---SLLLK----------YL-DCRP 315

Query: 430 SSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYE-DRISNATEKDIVQSSL 488
             L R         +   LS I  S+ D                D+++      I++SSL
Sbjct: 316 QDLPREV----LTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTT-----IIESSL 363

Query: 489 THSMQRAGRDILEYAEKSDNKLDLRNAAYCSALF----KI 524
                    ++LE AE       L       ++F     I
Sbjct: 364 ---------NVLEPAEYRKMFDRL-------SVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	100.0
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	100.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	100.0
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	100.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	100.0
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	100.0
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	100.0
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	100.0
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	100.0
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	100.0
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	100.0
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	100.0
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	100.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	100.0
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	97.82
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.59
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.54
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.52
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.42
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.41
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.4
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.38
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.37
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.31
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.15
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.15
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.13
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.11
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.1
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.07
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.02
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.01
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.99
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.97
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.97
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.95
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.94
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.92
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.92
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.9
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.88
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.84
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.81
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.76
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.75
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.68
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.67
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.65
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.64
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.62
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.6
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.6
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.59
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.57
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.56
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.53
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.53
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.51
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.49
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.45
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.43
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.42
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.41
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.39
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.31
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.26
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.25
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.25
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.22
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.22
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.15
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.14
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.07
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.07
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.06
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.04
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.98
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.97
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.91
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.91
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.89
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.89
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.88
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.88
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.85
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.85
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.85
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.84
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.84
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.8
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.79
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.79
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.79
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.73
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.71
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	95.67
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.64
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.64
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.62
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.57
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.56
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.55
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.55
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.49
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.44
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.42
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.42
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.35
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.35
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.33
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.33
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.26
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.25
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.21
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.21
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.2
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.18
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.15
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.13
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	95.06
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.05
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.02
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	94.99
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.93
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.87
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.84
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.8
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.78
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	94.77
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.76
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.75
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	94.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.73
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.72
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.71
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.67
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.64
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.54
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.49
4had_A	350	Probable oxidoreductase protein; structural genomi	94.45
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	94.42
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	94.33
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.22
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.2
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.2
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.17
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	94.13
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.12
1ydw_A	362	AX110P-like protein; structural genomics, protein	94.05
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.01
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.96
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	93.93
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.89
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.89
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	93.86
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.81
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.77
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.77
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.76
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	93.72
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	93.68
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	93.65
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	93.61
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	93.59
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.59
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.55
4h3v_A	390	Oxidoreductase domain protein; structural genomics	93.53
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	93.52
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	93.47
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.47
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.47
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	93.46
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.43
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	93.41
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.34
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.3
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	93.3
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.3
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	93.27
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.27
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	93.23
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.22
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.19
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.18
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	93.18
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.17
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	93.16
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	93.15
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	93.09
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.08
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.08
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.07
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	93.04
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.99
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	92.98
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	92.97
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	92.96
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.9
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	92.88
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	92.78
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	92.75
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	92.72
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.72
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	92.71
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	92.7
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.68
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	92.64
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	92.56
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.51
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	92.46
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.45
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	92.43
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	92.29
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	92.28
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	92.27
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.26
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	92.21
2duw_A	145	Putative COA-binding protein; ligand binding prote	92.2
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	92.11
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	92.11
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	92.07
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	92.01
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	91.99
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	91.96
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.95
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	91.91
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.89
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	91.85
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.79
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	91.78
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	91.71
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	91.58
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	91.57
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	91.55
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	91.46
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.45
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	91.33
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	91.25
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	91.06
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	91.04
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	91.03
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	90.97
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.96
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.96
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	90.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.93
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	90.8
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	90.67
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	90.53
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	90.53
4dqx_A	277	Probable oxidoreductase protein; structural genomi	90.51
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	90.46
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.45
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	90.33
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	90.27
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	90.15
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	90.09
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.01
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.92
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	89.88
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	89.75
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.72
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	89.71
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	89.68
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	89.67
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.65
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.61
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	89.59
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	89.56
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	89.12
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.5
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	89.45
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.44
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	89.4
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.28
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	89.15
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	89.15
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	89.14
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.12
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	89.12
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	89.11
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	89.09
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.99
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	88.83
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	88.78
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.77
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	88.7
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	88.63
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	88.61
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	88.59
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.51
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.48
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.4
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	88.4
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	88.15
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	88.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.08
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	87.85
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	87.77
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	87.7
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.69
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	87.49
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	87.37
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	87.07
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.83
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	86.82
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	86.82
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	86.79
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	86.77
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	86.76
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	86.66
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	86.58
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	86.48
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	86.4
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.36
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	86.35
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	86.25
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	86.06
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	86.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	85.89
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	85.62
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.59
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	85.57
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	85.52
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	85.47
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	85.47
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	85.45
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	85.39
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	85.34
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.29
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	85.18
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.16
3imf_A	257	Short chain dehydrogenase; structural genomics, in	85.12
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.1
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	85.06
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	85.01
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	84.94
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	84.85
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	84.82
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.75
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	84.73
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	84.69
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	84.66
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	84.6
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	84.55
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	84.53
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	84.53
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	84.53
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	84.5
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	84.48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	84.45
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	84.44
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	84.39
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	84.31
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	84.3
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	84.27
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	84.26
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	84.14
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	84.12
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	84.09
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	84.04
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	84.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	83.87
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	83.87
1lnq_A	336	MTHK channels, potassium channel related protein;	83.84
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	83.75
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	83.74
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	83.67
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	83.57
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	83.55
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	83.55
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	83.5
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	83.5
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	83.47
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	83.45
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	83.39
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	83.37
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	83.36
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	83.34
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	83.27
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	83.22
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	83.2
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	83.2
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	83.13
4hb9_A	412	Similarities with probable monooxygenase; flavin,	83.13
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.11
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	83.11
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	83.11
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	83.1
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	83.09
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	83.09
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	83.08
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	83.08
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	83.06
3gms_A	340	Putative NADPH:quinone reductase; structural genom	83.03
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	82.99
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	82.98
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	82.96
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	82.89
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	82.88
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	82.87
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	82.84
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	82.82
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	82.8
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	82.8
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	82.75
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	82.73
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	82.73
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	82.71
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	82.62
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	82.56
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	82.31
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.27
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	82.24
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	82.19
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	82.18
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	82.14
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	82.14
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	82.0
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	81.99
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	81.94
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	81.86
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	81.84
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	81.78
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	81.75
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	81.72
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	81.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	81.67
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	81.67
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	81.65
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	81.65
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.6
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	81.53
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	81.5
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	81.48
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	81.46
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	81.4
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	81.36
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	81.32
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	81.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.23
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	81.09
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	81.08
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	81.08
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	81.04
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	80.95
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	80.94
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	80.93
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	80.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	80.82
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	80.74
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	80.71
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	80.71
1xq6_A	253	Unknown protein; structural genomics, protein stru	80.71
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	80.65
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	80.65
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	80.64
3cxt_A	291	Dehydrogenase with different specificities; rossma	80.63
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	80.49
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	80.46
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	80.44
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	80.42
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	80.34
1xq1_A	266	Putative tropinone reducatse; structural genomics,	80.25
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	80.23
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	80.2
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	80.19
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	80.18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	80.09
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	80.08
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	80.08
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	80.05

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=100.00  E-value=8.2e-146  Score=1170.79  Aligned_cols=495  Identities=48%  Similarity=0.837  Sum_probs=479.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEE
Q psy1913          37 PDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRC  116 (535)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv  116 (535)
                      +.+++|+||++|+.|||+|+++++++|++|++ .++|+|||.+++++++++|++|+|+|+|+|||+||+|++++|+|||+
T Consensus         2 ~~~~~~~f~~~v~~~~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~p~r~i~~~vp~~~D~G~~~v~~GyRv   80 (501)
T 3mw9_A            2 DREDDPNFFKMVEGFFDRGASIVEDKLVEDLK-TRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRA   80 (501)
T ss_dssp             CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CTTCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChhhhhhhhHHHHHHHhCCCeEEEEEEEEEeCCCCEEEeeeEEE
Confidence            45789999999999999999999999999998 58999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCC
Q psy1913         117 HHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGP  196 (535)
Q Consensus       117 ~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp  196 (535)
                      |||+++||+||||||||++|++|+++||+||||||||++||||||||||++||+.+|+.|+||+||+|+++|.++++|||
T Consensus        81 qhn~a~GP~kGGiR~hp~v~l~ev~~La~~MT~KnAl~~LP~GGgKGgi~~DPk~~s~~El~r~~r~f~~eL~~~~~IGp  160 (501)
T 3mw9_A           81 QHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGP  160 (501)
T ss_dssp             ECCCSSSSEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHHHTTSCBT
T ss_pred             EECCCcCCCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCccCCHHHHHHHHHHHHHHHhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998789999


Q ss_pred             CCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCC
Q psy1913         197 GIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEP  276 (535)
Q Consensus       197 ~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~  276 (535)
                      ++|||||||||++++|+||+|+|+++.|..+.++++++||||+.+|||.+|.+||||||++++++++++.++++++|+++
T Consensus       161 ~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV~~~~~~~l~~~~~~~~~G~~~  240 (501)
T 3mw9_A          161 GVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP  240 (501)
T ss_dssp             TTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHTCHHHHHHTTCCS
T ss_pred             CeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHHHHHHHHHHhhhHHHHHcCCCC
Confidence            99999999999999999999999999998766678999999999999999999999999999999999888899999877


Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      +|+|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|.++++++|++.+||+++.+++++|+++
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~G--id~~~l~~~k~~~g~i~~~~~a~~~~~~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDG--IDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTC--CCHHHHHHHHHHHSSSTTCTTSEEECSCGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCeecccCceeecccccccc
Confidence            899999999999999999999999999999999999999999999  999999999999999999999988855899999


Q ss_pred             ceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMS  436 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~  436 (535)
                      ||||+|||++|+||.+||++|+||+||||||+|+||+|+++|++|||+|+||+++||||||+|||||+||++|++||||+
T Consensus       319 ~DIliPcA~~n~I~~~na~~l~akiV~EgAN~p~T~eA~~iL~~rGIl~~PD~~aNAGGV~vSy~E~~qn~~~~~~grl~  398 (501)
T 3mw9_A          319 CDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLT  398 (501)
T ss_dssp             CSEEEECSSSCCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCSCTTTTT
T ss_pred             ceEEeeccccCccCHhHHHHcCceEEEeCCCCcCCHHHHHHHHHCCCEEEChHHhcCchHHhhHHHHHhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhhhhhhhhhhhh---hhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Q psy1913         437 FGYDKEISDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLR  513 (535)
Q Consensus       437 ~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR  513 (535)
                      ++|++++++..+++|+++|++.++.   .++..|+.+++++++||+|+|+|+++|+++|.++|++|++++++++.++|||
T Consensus       399 ~~~e~~~~~w~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ga~e~d~v~sgL~~~m~~a~~~v~~~a~~~~~~~~lR  478 (501)
T 3mw9_A          399 FKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLR  478 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTCCCCCCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHH
T ss_pred             hhhhcccccccHHHHHHHHHhhhcccccccccCchHHHHHHHcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            9999999999999999999988665   6777899999999999999999999999999999999999999998668999


Q ss_pred             HHHhHHHHHHHHHHHHHcCCC
Q psy1913         514 NAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       514 ~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      ||||++||+||+++|+.||++
T Consensus       479 tAAy~~ai~rv~~a~~~~G~~  499 (501)
T 3mw9_A          479 TAAYVNAIEKVFRVYNEAGVT  499 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHcCcc
Confidence            999999999999999999974

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=100.00  E-value=2e-124  Score=993.60  Aligned_cols=410  Identities=35%  Similarity=0.576  Sum_probs=393.2

Q ss_pred             CCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecC
Q psy1913          41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCT  120 (535)
Q Consensus        41 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~  120 (535)
                      .+++|++++.||++|+++++  +                 +++++++|++|+|+++|+|||.||||++++|+|||+|||+
T Consensus        14 ~~~~~~~~~~~~~~a~~~~~--~-----------------~~~~~~~l~~p~r~~~~~vp~~~d~G~~~v~~GyRvqhn~   74 (424)
T 3k92_A           14 ALNLFLSTQTIIKEALRKLG--Y-----------------PGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND   74 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--C-----------------CHHHHHHHSSCSEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHhcCCCeEEEEEEEEEecCCcEEEEEEEEEEECC
Confidence            35799999999999999998  4                 6799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcc
Q psy1913         121 HKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV  200 (535)
Q Consensus       121 ~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di  200 (535)
                      ++||+||||||||++|++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+  +|||++||
T Consensus        75 a~GP~kGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKggi~~DP~~~s~~El~r~~r~f~~~l~~--~iG~~~di  152 (424)
T 3k92_A           75 AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQ--IVGPTKDI  152 (424)
T ss_dssp             SSSSEECCEEEETTCCHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEE
T ss_pred             cCCCCCCCeEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997  99999999


Q ss_pred             cCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCC
Q psy1913         201 PAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN  280 (535)
Q Consensus       201 papDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g  280 (535)
                      |||||||++++|+||+|+|+++.|..   .++++||||+.+|||.+|.++|||||++++++++      +.+|+  +++|
T Consensus       153 pApDvgt~~~~m~~~~~~y~~~~g~~---~~~~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~g~--~l~g  221 (424)
T 3k92_A          153 PAPDVYTNSQIMAWMMDEYSRLREFD---SPGFITGKPLVLGGSQGRETATAQGVTICIEEAV------KKKGI--KLQN  221 (424)
T ss_dssp             CCBCTTCCHHHHHHHHHHHHHHHTSC---CGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHH------HHTTC--CGGG
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHhCCC---CcceeecccccCCCcCCCcccHHHHHHHHHHHHH------HHcCC--Cccc
Confidence            99999999999999999999999974   6799999999999999999999999999999555      46786  5899


Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      +||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|+++++++|++.+|+ ++.+++ ++|+++|||
T Consensus       222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~G--lD~~~l~~~~~~~g~i~~~~-a~~~~~~~i~~~~~DI  298 (424)
T 3k92_A          222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDG--LDIPYLLDKRDSFGMVTNLF-TDVITNEELLEKDCDI  298 (424)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTC--CCHHHHHHHCCSSSCCGGGC-SCCBCHHHHHHSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCC--CCHHHHHHHHHHhCCCCCCC-cEEecCccceeccccE
Confidence            99999999999999999999999999999999999999999  99999999999999999998 777887 899999999


Q ss_pred             EeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccccccccc
Q psy1913         360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGY  439 (535)
Q Consensus       360 LiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~  439 (535)
                      |+|||++|+||.+||++|+||+||||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|       
T Consensus       299 liPcA~~n~I~~~~a~~l~ak~V~EgAN~p~t~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w-------  371 (424)
T 3k92_A          299 LVPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYW-------  371 (424)
T ss_dssp             EEECSCSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCC-------
T ss_pred             EeecCcccccChhhHhhcCceEEEcCCCCCCCHHHHHHHHHCCCEEECchHhcCCCEEeehhHHHhcccccCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998755       


Q ss_pred             chhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Q psy1913         440 DKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCS  519 (535)
Q Consensus       440 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~  519 (535)
                      +++                                        +|+++|+++|.++|++|++++++++  +++|+|||++
T Consensus       372 ~~e----------------------------------------eV~~~l~~~m~~~~~~v~~~a~~~~--~~~~~aA~~~  409 (424)
T 3k92_A          372 SEE----------------------------------------EVAEKLRSVMVSSFETIYQTAATHK--VDMRLAAYMT  409 (424)
T ss_dssp             CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHHH
T ss_pred             CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHHH
Confidence            664                                        3999999999999999999999996  7999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy1913         520 ALFKIFKTYEEAGLE  534 (535)
Q Consensus       520 ai~rv~~a~~~~G~~  534 (535)
                      |++||++||+.||+|
T Consensus       410 a~~rva~a~~~~G~~  424 (424)
T 3k92_A          410 GIRKSAEASRFRGWV  424 (424)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            999999999999987

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=100.00  E-value=2.8e-122  Score=981.85  Aligned_cols=426  Identities=40%  Similarity=0.641  Sum_probs=402.1

Q ss_pred             CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEc
Q psy1913          24 QSGHKIPERLKDVPDKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRR  103 (535)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~  103 (535)
                      .++|++|+++++++.+  |+||++++.+|++|+.+++  +                 +|+++++|++|+|+++|++||+|
T Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~P~r~i~~~~p~~~   71 (440)
T 3aog_A           13 DPNSMKSEPLSYLGKD--GGPWEIFTEQVDRVVPYLG--R-----------------LAPLAESLKRPKRVLIVDVPVRL   71 (440)
T ss_dssp             -------CCCGGGTTC--CTHHHHHHHHHHHHGGGCG--G-----------------GGGGGGGGGSCSEEEEEEEEEEC
T ss_pred             CcccccchhhhccCCC--CCHHHHHHHHHHHHHHHhC--C-----------------CHHHHHHhcCCCeEEEEEEEEEe
Confidence            4689999999998777  9999999999999999987  3                 46789999999999999999999


Q ss_pred             CCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHH
Q psy1913         104 DSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRK  183 (535)
Q Consensus       104 d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~  183 (535)
                      |+|++++|+|||+|||+++||+||||||||++|++||++||+||||||||++||||||||||++||+.+|+.|+||+||+
T Consensus        72 D~G~~~~~~G~rvqhn~a~GPakGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~Eler~~r~  151 (440)
T 3aog_A           72 DDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRR  151 (440)
T ss_dssp             TTSCEEEEEEEEEEEECTTSSEECCEEECTTCCHHHHHHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred             cCCCEEEEEEEEEEECCCCCCCcCCeEEEecCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHH
Q psy1913         184 FALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILV  263 (535)
Q Consensus       184 f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l  263 (535)
                      |+++|.+  +|||++||||||+||++++|+||+|+|++..|..   +++++||||+.+|||.+|.++|||||++++++++
T Consensus       152 f~~~l~~--~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~---~~g~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~  226 (440)
T 3aog_A          152 YTSEIGI--LLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRT---VPGVVTGKPIALGGSLGRRDATGRGVFITAAAAA  226 (440)
T ss_dssp             HHHHHGG--GCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSC---CGGGSSSCCGGGTCCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--hcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCC---CCCeEeccchhhCCCCCCCcchHHHHHHHHHHHH
Confidence            9999997  9999999999999999999999999999999874   6899999999999999999999999999999665


Q ss_pred             hcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC
Q psy1913         264 NNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP  343 (535)
Q Consensus       264 ~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~  343 (535)
                            +.+|+  +++|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|+++++++|++.+|+
T Consensus       227 ------~~~g~--~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~G--ld~~~l~~~~~~~g~i~~y~  296 (440)
T 3aog_A          227 ------EKIGL--QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAG--IDPYDLLRHVQEFGGVRGYP  296 (440)
T ss_dssp             ------HHHTC--CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTC--CCHHHHHHHHHHTSSSTTCT
T ss_pred             ------HhcCC--CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCC--CCHHHHHHHHHhcCCcccCC
Confidence                  45786  589999999999999999999999999999999999999999999  99999999999999999999


Q ss_pred             CCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHh
Q psy1913         344 GTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFE  422 (535)
Q Consensus       344 ~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~E  422 (535)
                      +++.+++ ++|+.+||||+|||++|+||.+||++|+||+||||||+|+||+|+++|++|||+|+||+++|||||++||||
T Consensus       297 ~a~~i~~~ei~~~~~DIlvPcA~~n~i~~~na~~l~ak~VvEgAN~p~t~eA~~iL~~~GI~~~PD~~aNaGGV~vS~~E  376 (440)
T 3aog_A          297 KAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFE  376 (440)
T ss_dssp             TSEECCHHHHTTCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHH
T ss_pred             CceEcCchhhhcCCCcEEEecCCcCccchhhHHHcCCcEEEecCccccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEE
Confidence            9988877 899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         423 WLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEY  502 (535)
Q Consensus       423 w~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~  502 (535)
                      |+||+++++|       +++                                        +|+++|+++|.++|++++++
T Consensus       377 ~~qN~~~~~w-------~~e----------------------------------------ev~~~l~~im~~~~~~v~~~  409 (440)
T 3aog_A          377 WVQDFNSYFW-------TEE----------------------------------------EINARLERVLRNAFEAVWQV  409 (440)
T ss_dssp             HHHHTTTCCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCccCcC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            9999998755       664                                        38999999999999999999


Q ss_pred             HHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         503 AEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       503 a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      |++++  +++|+|||++|++||++||+.||+|
T Consensus       410 a~~~~--~~~~~aA~~~a~~rva~a~~~~G~~  439 (440)
T 3aog_A          410 AQEKK--IPLRTAAYVVAATRVLEARALRGLY  439 (440)
T ss_dssp             HHHHT--CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHC--cCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99995  7999999999999999999999987

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=100.00  E-value=3e-121  Score=973.53  Aligned_cols=416  Identities=27%  Similarity=0.386  Sum_probs=386.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH  118 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H  118 (535)
                      ..+|.|++.+..+|+.++.+++  +              .+.+.+++++|++|+|+++|+|||.||+|++++|+||||||
T Consensus        28 ~~~~ef~qa~~e~~~~~~~~~~--~--------------~p~~~~~~~~l~~P~r~i~~~vp~~~D~G~~~v~~GyRvqh   91 (456)
T 3r3j_A           28 KNEPEFLQAFEEVLSCLKPVFK--K--------------DNVYIGVLENIAEPERVIQFRVPWINDKGEHKMNRGFRVQY   91 (456)
T ss_dssp             TTCHHHHHHHHHHHHHTHHHHH--H--------------CTHHHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHh--h--------------ChHhhHHHHhccCCceEEEEEEEEEeCCCcEEEEEEEEEEE
Confidence            4568999999999999999986  2              01123679999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913         119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI  198 (535)
Q Consensus       119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  198 (535)
                      |+++||+||||||||++|++|+++||+||||||||++||||||||||++||+.+|+.|+||++|+|+.+|.+  ||||++
T Consensus        92 n~a~GPakGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~s~~el~r~~r~f~~eL~~--~iGp~~  169 (456)
T 3r3j_A           92 NSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFR--YIGPNT  169 (456)
T ss_dssp             ECSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTSSCCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGG--GCBTTT
T ss_pred             CCcCCCccCceEecCCCCHHHHHHHHHHHHHHHHhcCCCCCcceeEEecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986  999999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      |||||||||++++|+||+|+|++..+.    .++++||||+.+|||.+|.+||||||+++++++++      .+|.  ++
T Consensus       170 DvpApDvGt~~~em~w~~~~y~~~~~~----~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~~~~~~~------~~g~--~l  237 (456)
T 3r3j_A          170 DVPAGDIGVGGREIGYLFGQYKKLKNS----FEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLK------DLND--NL  237 (456)
T ss_dssp             EEEECBTTBCHHHHHHHHHHHHHHHTS----CCCSCBSCCGGGTCCTTTTTHHHHHHHHHHHHHHH------TTTC--CS
T ss_pred             CcCCCCCCCCHHHHHHHHHHHHhhcCc----ccceecCCcccccCCCCCCcccchHHHHHHHHHHH------HcCC--Cc
Confidence            999999999999999999999988754    57999999999999999999999999999996665      4565  58


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHH---HHHc-CCcccC----CCCcccCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY---KITK-GTIKGY----PGTKSAPT  350 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~---~~~~-g~v~~~----~~a~~i~~  350 (535)
                      +|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|..+   ++++ +++.+|    ++++.+++
T Consensus       238 ~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~G--ld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v~~  315 (456)
T 3r3j_A          238 ENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNG--FTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFEN  315 (456)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTC--CCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEECS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCC--CCHHHHHHHHHHHHhcCcchhhhhhcCCCceEeCC
Confidence            9999999999999999999999999999999999999999999  999999865   4443 456654    78888888


Q ss_pred             -CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                       ++|+++||||+|||++|+||.+||++|   +||+||||||+|+||+|+++|++|||+|+||+++||||||+|||||+||
T Consensus       316 ~~i~~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn  395 (456)
T 3r3j_A          316 QKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQN  395 (456)
T ss_dssp             CCGGGSCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHHHHHHTTTCEEECHHHHTTHHHHHHHHHHHHH
T ss_pred             ccccccCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHHHHHHHCCCEEeChHHhcCCceeeehHHHhhc
Confidence             999999999999999999999999999   8999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                      +++++|       +++                                        +|+++|+++|.++|++++++++++
T Consensus       396 ~~~~~w-------~~e----------------------------------------eV~~~L~~im~~~~~~~~~~a~~~  428 (456)
T 3r3j_A          396 SMRLQW-------THQ----------------------------------------ETDMKLQNIMKSIYEQCHNTSKIY  428 (456)
T ss_dssp             HHTCCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998755       664                                        399999999999999999999999


Q ss_pred             CCCCCHHHHHhHHHHHHHHHHHHHcCC
Q psy1913         507 DNKLDLRNAAYCSALFKIFKTYEEAGL  533 (535)
Q Consensus       507 ~~~~~lR~AAy~~ai~rv~~a~~~~G~  533 (535)
                      +...|||+|||++||+||++||+.||+
T Consensus       429 ~~~~~~r~aA~i~~~~rva~a~~~~G~  455 (456)
T 3r3j_A          429 LNESDLVAGANIAGFLKVADSFLEQGG  455 (456)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHhccHHHHHHHHHHHHhcCC
Confidence            744599999999999999999999996

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=100.00  E-value=2.6e-119  Score=955.19  Aligned_cols=410  Identities=31%  Similarity=0.516  Sum_probs=390.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEE
Q psy1913          38 DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCH  117 (535)
Q Consensus        38 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~  117 (535)
                      ...+++||++++.+|++|+.+++  +                 +|+++++|++|+|+++|++||+||+|++++|+|||+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~   68 (419)
T 3aoe_E            8 PPEDPGLWDTYLEWLERALKVAG--V-----------------HPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVV   68 (419)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTTSC--C-----------------CHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhC--C-----------------CHHHHhhcCCCCeEEEEEEEEEecCCCEEEEEEEEEE
Confidence            35567899999999999999987  3                 4679999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCC
Q psy1913         118 HCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPG  197 (535)
Q Consensus       118 H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~  197 (535)
                      ||+++||+||||||||++|++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+  +|||+
T Consensus        69 hn~~~GPakGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~dP~~~s~~El~r~~r~f~~~l~~--~iGp~  146 (419)
T 3aoe_E           69 HDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVG--LIGPD  146 (419)
T ss_dssp             EECSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCSCEEEEEEECSCGGGSCHHHHHHHHHHHHHHHTT--TCBTT
T ss_pred             ECCCCCCCcCCeEecCCCCHHHHHHHHHHHHHHHHhccCCCCCccEEEecCCCCCCHHHHHHHHHHHHHHHHH--hcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996  99999


Q ss_pred             CcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCC
Q psy1913         198 IDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPC  277 (535)
Q Consensus       198 ~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~  277 (535)
                      +||||||+||++++|+||+|+|++..|+.   +++++||||+.+|||.+|.++|||||++++++++      +.+|+  +
T Consensus       147 ~dvpA~DvGt~~~~m~~~~~~y~~~~~~~---~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~g~--~  215 (419)
T 3aoe_E          147 SDILGPDLGADQQVMAWIMDTYSMTVGST---VPGVVTGKPHALGGSEGRDDAAGLGALLVLEALA------KRRGL--D  215 (419)
T ss_dssp             TEEEEEBTTBCHHHHHHHHHHHHHHHTSC---CGGGBSSCCGGGTCCSSCSCHHHHHHHHHHHHHH------HHHTC--C
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHhhCCC---CCCeeeccchhcCCCCCCccchHHHHHHHHHHHH------HhcCC--C
Confidence            99999999999999999999999998874   6899999999999999999999999999999665      45786  5


Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDK  356 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~  356 (535)
                      ++|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|.+++++++++.+|    .+++ ++|.++
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~G--ld~~~l~~~~~~~g~v~~~----~~~~~e~~~~~  289 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEG--LDVAEVLSAYEATGSLPRL----DLAPEEVFGLE  289 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTC--CCHHHHHHHHHHHSSCSCC----CBCTTTGGGSS
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCC--CCHHHHHHHHHhhCCccee----eccchhhhccC
Confidence            89999999999999999999999999999999999999999999  9999999999999999888    4566 899999


Q ss_pred             ceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMS  436 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~  436 (535)
                      ||||+|||++|+||.+||++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|    
T Consensus       290 ~DVliP~A~~n~i~~~~A~~l~ak~V~EgAN~p~t~~A~~~L~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w----  365 (419)
T 3aoe_E          290 AEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFW----  365 (419)
T ss_dssp             CSEEEECSCTTCBCHHHHTTCCCSEEEECSTTCBCHHHHHHHHHHTCEEECHHHHTCHHHHHHHHHHHHHHHTCCC----
T ss_pred             ceEEEecccccccccchHhhCCceEEEECCCCcCCHHHHHHHHHCCCEEECHHHHhCCCchhhHHHHhhcccccCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998755    


Q ss_pred             cccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy1913         437 FGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAA  516 (535)
Q Consensus       437 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AA  516 (535)
                         +++                                        +|+++|+++|.++|++|+++|++++  +|+|+||
T Consensus       366 ---~~e----------------------------------------ev~~~l~~im~~~~~~v~~~a~~~~--~~~~~aA  400 (419)
T 3aoe_E          366 ---SPE----------------------------------------EVRERFETRVARVVDAVCRRAERGG--LDLRMGA  400 (419)
T ss_dssp             ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHT--CCHHHHH
T ss_pred             ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHHH
Confidence               664                                        3899999999999999999999995  7999999


Q ss_pred             hHHHHHHHHHHHHHcCCC
Q psy1913         517 YCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       517 y~~ai~rv~~a~~~~G~~  534 (535)
                      |++|++||+++|+.||+|
T Consensus       401 ~~~a~~rv~~a~~~~G~~  418 (419)
T 3aoe_E          401 LALALERLDEATRLRGVY  418 (419)
T ss_dssp             HHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999999999987

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=100.00  E-value=3.5e-119  Score=961.56  Aligned_cols=417  Identities=26%  Similarity=0.360  Sum_probs=388.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH  118 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H  118 (535)
                      ..+|.|+++++.+|++|+.+++  +         .|+     +.+++++|++|+|+++|++||.+|+|++++|+|||+||
T Consensus        41 ~~~~e~~~~~~~~~~~~~~~~~--~---------~p~-----~~~~le~l~~Per~i~~~vp~~~D~G~v~v~~Gyrvqh  104 (470)
T 2bma_A           41 PNQVEFLQAFHEILYSLKPLFM--E---------EPK-----YLPIIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQY  104 (470)
T ss_dssp             TTCHHHHHHHHHHHHHTHHHHH--H---------CTT-----HHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHhc--c---------Chh-----hhHHHHHhcCCceEEEEEEEEEeCCCCEEEEEEEEEEE
Confidence            4569999999999999999986  2         011     11799999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913         119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI  198 (535)
Q Consensus       119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  198 (535)
                      |+++||+||||||||+++++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.+  +|||+.
T Consensus       105 n~a~GPakGGiR~hp~v~~~ev~~La~~mt~KnAl~~lP~GGgKGgi~~DPk~~S~~El~r~~r~f~~~L~~--~iGp~~  182 (470)
T 2bma_A          105 NSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYR--HIGPCT  182 (470)
T ss_dssp             ECSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTCSSCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHGG--GCBTTT
T ss_pred             CCCCCCCCCCeEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEeCCCCcCCHHHHHHHHHHHHHHhhh--ccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996  899999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      |||||||||++++|+||+++|++..++.    .+++||||+.+|||.+|.++|||||+++++++++      .+|.  ++
T Consensus       183 DvpApDvGt~~~em~~~~~~y~~~~~~~----~gvvTGKp~~~GGs~~r~~aTg~Gv~~~~~~~l~------~~G~--~l  250 (470)
T 2bma_A          183 DVPAGDIGVGGREIGYLYGQYKKIVNSF----NGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLK------SLNI--PV  250 (470)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHHHHCCC----SCSSSSCCGGGTCCTTTTTHHHHHHHHHHHHHHH------TTTC--CG
T ss_pred             CccCCCCCCChHHHHHHHHHHHHhcCCc----ccEEeCCCccCCCCCCccccchHHHHHHHHHHHH------hccC--Cc
Confidence            9999999999999999999999988874    3899999999999999999999999999996665      4674  68


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC---CHHHHHHHHHHc-CCcccCC----CCcccCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI---NYKDLHTYKITK-GTIKGYP----GTKSAPT  350 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL---Di~~L~~~~~~~-g~v~~~~----~a~~i~~  350 (535)
                      +|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  |   |++.|+++++++ |++.+|+    +++.+++
T Consensus       251 ~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~G--id~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~  328 (470)
T 2bma_A          251 EKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNG--FTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPN  328 (470)
T ss_dssp             GGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSC--CCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCC--CCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecC
Confidence            9999999999999999999999999999999999999999999  9   666677777765 7888874    6788887


Q ss_pred             -CCccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                       ++|+++||||+|||++|+||.+||++|   +||+||||||+|+||+|+++|++|||+|+||+++|||||++|||||+||
T Consensus       329 ~~~~~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~~L~~rGIl~~PD~~aNAGGV~~S~~E~~qn  408 (470)
T 2bma_A          329 EKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQN  408 (470)
T ss_dssp             CCTTSSCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHH
T ss_pred             cCeeecCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhhCCCceeeHHHhhcc
Confidence             899999999999999999999999999   9999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                      +++++|       +++                                        +|+++|+++|.++|++++++++++
T Consensus       409 ~~~~~w-------~~e----------------------------------------ev~~~L~~im~~~~~~~~~~a~~~  441 (470)
T 2bma_A          409 FQFSHW-------TRE----------------------------------------TVDEKLKEIMRNIFIACSENALKY  441 (470)
T ss_dssp             HTTCCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998755       653                                        299999999999999999999999


Q ss_pred             CCCC-CHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         507 DNKL-DLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       507 ~~~~-~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +.+. |||+|||++||+||++||+.||+|
T Consensus       442 ~~~~~~~r~~A~i~~~~rva~am~~~G~~  470 (470)
T 2bma_A          442 TKNKYDLQAGANIAGFLKVAESYIEQGCF  470 (470)
T ss_dssp             HSCSSCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7433 999999999999999999999986

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=100.00  E-value=1e-118  Score=952.08  Aligned_cols=411  Identities=36%  Similarity=0.610  Sum_probs=373.6

Q ss_pred             CCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCC
Q psy1913          42 PGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTH  121 (535)
Q Consensus        42 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~  121 (535)
                      .+||++++.+|++|+.+++  +                 +|+++++|++|+|+++|++||+||+|++++|+|||+|||++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~p~r~i~~~~p~~~d~G~~~~~~g~rv~hn~~   65 (421)
T 2yfq_A            5 LNPLVAAQEKVRIACEKLG--C-----------------DPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSA   65 (421)
T ss_dssp             -CHHHHHHHHHHHHHHHHT--C-----------------CHHHHHHHSSCSEEEEEEEEEEETTTEEEEEEEEEEECCCS
T ss_pred             cCHHHHHHHHHHHHHHHhC--C-----------------CHHHHhhccCCceEEEEEEEEEecCCCEEEEEEEEEEECCC
Confidence            4799999999999999987  3                 46899999999999999999999999999999999999999


Q ss_pred             CCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCccc
Q psy1913         122 KSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVP  201 (535)
Q Consensus       122 ~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dip  201 (535)
                      +||+||||||||++|++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+++|.+  +|||++|||
T Consensus        66 ~GP~kGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKggi~~dP~~~s~~el~r~~r~f~~~l~~--~iG~~~dvp  143 (421)
T 2yfq_A           66 VGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYK--YLGDRIDIP  143 (421)
T ss_dssp             SSSEEEEEEEESSCCHHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEEE
T ss_pred             CCCCcCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCcEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999997  999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCc
Q psy1913         202 APDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENK  281 (535)
Q Consensus       202 apDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~  281 (535)
                      |||+||++++|+||+|+|++..|++  ..++++||||+.+|||.+|.++|||||++++++++      +.+|+  +++|+
T Consensus       144 A~Dvgt~~~~m~~~~~~y~~~~~~~--~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~g~--~l~g~  213 (421)
T 2yfq_A          144 APDVNTNGQIMSWFVDEYVKLNGER--MDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESA------KRFGI--KMEDA  213 (421)
T ss_dssp             EECTTCCHHHHHHHHHHHHHHTTTC--CCGGGSCSCCGGGTCCTTCTTHHHHHHHHHHHHHH------HHTTC--CGGGS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhCCC--CCCCEEecCchhcCCCCCCCcchHHHHHHHHHHHH------HhcCC--CccCC
Confidence            9999999999999999999988863  14699999999999999999999999999999655      45786  58999


Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCC-----ceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD-----TAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~-----G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ||+||||||||+++|++|++.|+|||+|||++     |+||||+|  ||+++|.++++++|++.+|++++.+++ ++|++
T Consensus       214 ~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~G--ld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~~~  291 (421)
T 2yfq_A          214 KIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENG--IDFKELLAYKEANKTLIGFPGAERITDEEFWTK  291 (421)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSC--CCHHHHHHHHHHHCC------------------
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCC--CCHHHHHHHHHhcCCcccCCCceEeCccchhcC
Confidence            99999999999999999999999999999999     99999999  999999999999999999999998888 89999


Q ss_pred             cceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccccc
Q psy1913         356 KVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRM  435 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl  435 (535)
                      +||||+|||++|+||.+||.+++||+||||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||+++++|   
T Consensus       292 ~~DIliP~A~~n~i~~~~A~~l~ak~VvEgAN~P~t~ea~~il~~~GI~~~Pd~~aNaGGV~vS~~E~~qN~~~~~w---  368 (421)
T 2yfq_A          292 EYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYW---  368 (421)
T ss_dssp             ---CEEECSCSSCSCHHHHTTCCCSEEECCSSSCSCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHHHTCCC---
T ss_pred             CccEEEEcCCcCcCCcccHHHcCCeEEEeCCccccCHHHHHHHHHCCCEEEChHHHhCCCeEEEEEEEEecCccCcC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998755   


Q ss_pred             ccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy1913         436 SFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNA  515 (535)
Q Consensus       436 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~A  515 (535)
                          +++                                        +|.++|+++|.++|+++++.|++++  +|+|+|
T Consensus       369 ----~~e----------------------------------------~V~~~l~~~m~~~~~~v~~~A~~~g--~~~~~a  402 (421)
T 2yfq_A          369 ----TEA----------------------------------------EVEEKQEADMMKAIKGVFAVADEYN--VTLREA  402 (421)
T ss_dssp             ----CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHH
T ss_pred             ----CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHH
Confidence                664                                        3899999999999999999999995  799999


Q ss_pred             HhHHHHHHHHHHHHHcCCC
Q psy1913         516 AYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       516 Ay~~ai~rv~~a~~~~G~~  534 (535)
                      ||++|++||+++|+.||+|
T Consensus       403 A~~~a~~rv~~a~~~~G~~  421 (421)
T 2yfq_A          403 VYMYAIKSIDVAMKLRGWY  421 (421)
T ss_dssp             HHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999986

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=100.00  E-value=1.6e-117  Score=945.38  Aligned_cols=417  Identities=24%  Similarity=0.331  Sum_probs=380.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEec
Q psy1913          40 ENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHC  119 (535)
Q Consensus        40 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~  119 (535)
                      .+|.|++.+...++.-..+++.     .|         ......++++|++|+|+|+|++||.||+|++++|+|||||||
T Consensus        23 ~~~ef~qa~~e~~~~l~~~~~~-----~p---------~y~~~~~~e~l~~PeR~i~~~vp~~~D~G~~~v~~GyRvqhn   88 (450)
T 4fcc_A           23 NQTEFAQAVREVMTTLWPFLEQ-----NP---------KYRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFS   88 (450)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHH-----CG---------GGTSTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHHh-----Ch---------hhhhhhHHHHHhCCceEEEEEEEEEECCCcEEEEEEEEEEEC
Confidence            3567888888877766555531     11         111357899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCc
Q psy1913         120 THKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGID  199 (535)
Q Consensus       120 ~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~d  199 (535)
                      +++||+||||||||++|++||++||+||||||||++||||||||||++||+.+|+.|+||++|+|+.+|.+  +|||+.|
T Consensus        89 ~alGP~kGG~Rfhp~v~l~ev~~La~~mT~KnAl~gLP~GGgKggi~~DPk~~s~~El~R~~~~f~~eL~~--~iG~d~d  166 (450)
T 4fcc_A           89 SAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYR--HLGADTD  166 (450)
T ss_dssp             CSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGG--GCBTTTE
T ss_pred             CCCCCCCCceEecCCCCHHHHHHHHHHHHHHHHHcCCCCCCCceEEecCCCcCCHHHHHHHHHHHHHHhhh--eecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996  8999999


Q ss_pred             ccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCC
Q psy1913         200 VPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCME  279 (535)
Q Consensus       200 ipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~  279 (535)
                      ||||||||++++|+||+++|+++.+.    .++++||||+.+|||.+|.+||||||++++++++      +.+|.  +++
T Consensus       167 vpa~Dig~~~~em~~~~~~y~~~~~~----~~~v~TGk~~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~~~--~l~  234 (450)
T 4fcc_A          167 VPAGDIGVGGREVGFMAGMMKKLSNN----TACVFTGKGLSFGGSLIRPEATGYGLVYFTEAML------KRHGM--GFE  234 (450)
T ss_dssp             EEECBTTBCHHHHHHHHHHHHHHHTC----CSCCCSSCCGGGTCCTTTTTHHHHHHHHHHHHHH------HHTTC--CST
T ss_pred             CCccceeecchhhhhhhhhhhhccCC----CceeecCCCcccCCCCCCCCceeeeHHHHHHHHH------HHcCC--CcC
Confidence            99999999999999999999998764    4789999999999999999999999999999665      45665  589


Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc----CCcccCC---CCcccCC-C
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK----GTIKGYP---GTKSAPT-D  351 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~----g~v~~~~---~a~~i~~-e  351 (535)
                      |+||+||||||||+++|++|++.|+|||+|||++|+||||+|  ||+++|.++++.+    +.+..|+   +++.+++ +
T Consensus       235 Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~G--id~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~~  312 (450)
T 4fcc_A          235 GMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG--FTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQ  312 (450)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTC--CCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETCC
T ss_pred             CCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCC--CCHHHHHHHHHHhcccCCccccccccCCcEEecCcc
Confidence            999999999999999999999999999999999999999999  9999999887644    3444443   5677788 9


Q ss_pred             CccccceEEeeccccccccccccccccc---eEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccc
Q psy1913         352 IMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS  428 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~na~~i~A---kiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~  428 (535)
                      +|+++||||+|||++|+||.+||++|+|   |+|+||||+|+||||+++|++|||+|+||+++||||||+|||||+||++
T Consensus       313 i~~~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL~~rGIl~~PD~~aNAGGVi~S~~E~~qn~~  392 (450)
T 4fcc_A          313 PWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAA  392 (450)
T ss_dssp             GGGSCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccCCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHHHHHCCCEEEChHHhcCccHhhhHHHHhhhcc
Confidence            9999999999999999999999999985   9999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1913         429 HSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDN  508 (535)
Q Consensus       429 ~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~  508 (535)
                      +++|       ++|                                        +|+++|+++|.++|+++++++++.. 
T Consensus       393 ~~~w-------~~e----------------------------------------eV~~kL~~im~~~~~~~~~~~~e~~-  424 (450)
T 4fcc_A          393 RLGW-------KAE----------------------------------------KVDARLHHIMLDIHHACVEHGGEGE-  424 (450)
T ss_dssp             TCCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHTSCSSS-
T ss_pred             cCCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            8755       664                                        2999999999999999999987754 


Q ss_pred             CCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         509 KLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       509 ~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      .+|||+|||++|++||++||+.||+.
T Consensus       425 ~~~~~~aA~i~a~~rVa~Am~~~G~v  450 (450)
T 4fcc_A          425 QTNYVQGANIAGFVKVADAMLAQGVI  450 (450)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence            58999999999999999999999973

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=100.00  E-value=7.4e-117  Score=935.89  Aligned_cols=411  Identities=41%  Similarity=0.689  Sum_probs=390.5

Q ss_pred             CCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecC
Q psy1913          41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCT  120 (535)
Q Consensus        41 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~  120 (535)
                      +++||++++.+|++|+.+++  +                 +++++++|++|+|+++|++||+||+|++++|+|||+|||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~P~r~i~~~~p~~~D~G~~~~~~g~rv~~~~   62 (415)
T 2tmg_A            2 EKSLYEMAVEQFNRAASLMD--L-----------------ESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNV   62 (415)
T ss_dssp             --CHHHHHHHHHHHHHHHTT--C-----------------CHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHhC--C-----------------CHHHHHhcCCCCeEEEEEEEEEecCCcEEEEEEEEEEECC
Confidence            47899999999999999987  3                 4678999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcc
Q psy1913         121 HKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV  200 (535)
Q Consensus       121 ~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di  200 (535)
                      ++||+||||||||+++++||++||++|||||||++||||||||||.+||+.+|+.|+||++|+|+++|.+  +|||++||
T Consensus        63 ~~GpakGGiR~~p~v~~~ev~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~--~ig~~~dv  140 (415)
T 2tmg_A           63 ARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQV--IIGPYNDI  140 (415)
T ss_dssp             TTSSEECCEEEESSCCHHHHHHHHHHHHHHHHHHTCSCCEEEEEEECCGGGSCHHHHHHHHHHHHHHTGG--GCBTTTEE
T ss_pred             CCCCCCCcEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHH--HhCCCcEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997  99999999


Q ss_pred             cCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCC
Q psy1913         201 PAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN  280 (535)
Q Consensus       201 papDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g  280 (535)
                      ||||+||++++|+||+++|++..|+.   .++++||||+.+|||.+|.++|||||++++++++      +.+|+  +++|
T Consensus       141 pa~D~gt~~~~m~~~~~~y~~~~~~~---~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~g~--~l~g  209 (415)
T 2tmg_A          141 PAPDVNTNADVIAWYMDEYEMNVGHT---VLGIVTGKPVELGGSKGREEATGRGVKVCAGLAM------DVLGI--DPKK  209 (415)
T ss_dssp             CCBCTTCCHHHHHHHHHHHHHHHSSC---CCCSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHH------HHTTC--CTTT
T ss_pred             eCCCCCCCHHHHHHHHHHHHHhhCCC---CCCeEecCchhhCCCCCcCcchHHHHHHHHHHHH------HHcCC--CcCC
Confidence            99999999999999999999999875   6799999999999999999999999999999555      45786  5899


Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      +||+||||||||+++|++|++ .|+|||+|||++|++|||+|  ||+++|.+++++++++.+|++++.+++ ++|+.+||
T Consensus       210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~G--ld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~~~~D  287 (415)
T 2tmg_A          210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG--FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVD  287 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTC--CCHHHHHHHHHHSSCSTTCSSSEEECHHHHTTCSCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCC--CCHHHHHHHHHhhCCcccCCCceEcCchhhhcCCCc
Confidence            999999999999999999999 99999999999999999999  999999999999999999999988877 89999999


Q ss_pred             EEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccc
Q psy1913         359 ILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFG  438 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~  438 (535)
                      ||+|||++|+||++||++++||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|      
T Consensus       288 IliP~A~~n~i~~~~a~~l~ak~V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~s~~E~vqN~~~~~w------  361 (415)
T 2tmg_A          288 ILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFW------  361 (415)
T ss_dssp             EEEECSSTTSBCHHHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHHHHHTTCCC------
T ss_pred             EEEecCCcCccCcccHHHcCCeEEEeCCCcccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccccC------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998755      


Q ss_pred             cchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Q psy1913         439 YDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYC  518 (535)
Q Consensus       439 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~  518 (535)
                       +++                                        +|+++|+++|.++|+++++.|++++  +++|+|||+
T Consensus       362 -~~e----------------------------------------~v~~~l~~~m~~~~~~v~~~A~~~g--~~~~~aA~~  398 (415)
T 2tmg_A          362 -DLD----------------------------------------QVRNALEKMMKGAFNDVMKVKEKYN--VDMRTAAYI  398 (415)
T ss_dssp             -CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHH
T ss_pred             -CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence             663                                        3899999999999999999999996  799999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q psy1913         519 SALFKIFKTYEEAGLE  534 (535)
Q Consensus       519 ~ai~rv~~a~~~~G~~  534 (535)
                      +|++||++||+.||+|
T Consensus       399 ~a~~rv~~a~~~~G~~  414 (415)
T 2tmg_A          399 LAIDRVAYATKKRGIY  414 (415)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999999986

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=1.8e-117  Score=941.64  Aligned_cols=411  Identities=36%  Similarity=0.573  Sum_probs=391.3

Q ss_pred             CCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecC
Q psy1913          41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCT  120 (535)
Q Consensus        41 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~  120 (535)
                      .++||++++.+|++++.+++  +                 +|+++++|++|+|+++|++||+||+|++++|+|||+|||+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~P~r~i~v~~p~~~D~G~~~~~~G~rv~~~~   63 (421)
T 1v9l_A            3 RTGFLEYVLNYVKKGVELGG--F-----------------PEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCD   63 (421)
T ss_dssp             -CHHHHHHHHHHHHHHHHTT--C-----------------CHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHhC--C-----------------CHHHHHhccCCceEEEEEEEEEecCCcEEEEEEEEeecCC
Confidence            35899999999999999987  3                 5689999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcc
Q psy1913         121 HKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV  200 (535)
Q Consensus       121 ~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di  200 (535)
                      ++||+||||||||+++++||++||++|||||||++||||||||||.+||+.+|+.|+||++|+|+++|.+  +|||++||
T Consensus        64 ~~GpakGG~R~~p~v~~~ev~~La~~mt~KnAl~~lP~GG~KGgi~~dP~~~s~~e~~r~~r~f~~~l~~--~iG~~~dv  141 (421)
T 1v9l_A           64 VLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDI  141 (421)
T ss_dssp             SSSSEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEE
T ss_pred             cCCCccccEEecCCCCHHHHHHHHHHHHHHHHhhCCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHH--hcCCCeEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997  99999999


Q ss_pred             cCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCC
Q psy1913         201 PAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMEN  280 (535)
Q Consensus       201 papDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g  280 (535)
                      ||||+||++++|+||+++|++..|+.   .++++||||+.+|||.+|.++|||||+++++++++      .+|+  +++|
T Consensus       142 pA~D~Gt~~~~m~~~~~~y~~~~~~~---~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~------~~g~--~l~g  210 (421)
T 1v9l_A          142 PAPDVGTNAQIMAWMVDEYSKIKGYN---VPGVFTSKPPELWGNPVREYATGFGVAVATREMAK------KLWG--GIEG  210 (421)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHTSC---CGGGSCSCCSSSSCCGGGGGHHHHHHHHHHHHHHH------HHHS--CCTT
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHhCCC---CCCeEeccchhhCCCCCcccchHHHHHHHHHHHHH------hcCC--CcCC
Confidence            99999999999999999999999875   68999999999999999999999999999996654      5775  5899


Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCC---ccc-CC-CCc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGT---KSA-PT-DIM  353 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a---~~i-~~-ell  353 (535)
                      +||+||||||||+++|++|++.|+|||+|||++|++|||+|  ||+++|.++++++++  +.+|+++   +.+ ++ ++|
T Consensus       211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~G--lD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~  288 (421)
T 1v9l_A          211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEG--LNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF  288 (421)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTC--CCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCC--CCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence            99999999999999999999999999999999999999999  999999999998888  8888876   777 77 899


Q ss_pred             cccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccccc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLG  433 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~g  433 (535)
                      +.+||||+|||++++||.+||++|+||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++| 
T Consensus       289 ~~~~Dil~P~A~~~~I~~~~a~~l~ak~V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w-  367 (421)
T 1v9l_A          289 KLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIW-  367 (421)
T ss_dssp             GCCCSEEEECSCSSCBCTTTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHHTTCCC-
T ss_pred             cCCccEEEecCcCCccchhhHHHcCceEEEecCCCcCCHHHHHHHHHCCCEEeChHHhhCCCeeeeHHHHHhhccccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998755 


Q ss_pred             ccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCH
Q psy1913         434 RMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAE-KSDNKLDL  512 (535)
Q Consensus       434 rl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~-~~~~~~~l  512 (535)
                            +++                                        +|+++|+++|.++|++|+++|+ +++  +++
T Consensus       368 ------~~e----------------------------------------~v~~~l~~im~~~~~~v~~~a~~~~~--~~~  399 (421)
T 1v9l_A          368 ------DEE----------------------------------------ETRKRLENIMVNNVERVYKRWQREKG--WTM  399 (421)
T ss_dssp             ------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHTTSSS--CCH
T ss_pred             ------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHhhcC--CCH
Confidence                  663                                        3899999999999999999999 885  799


Q ss_pred             HHHHhHHHHHHHHHHHHHcCCC
Q psy1913         513 RNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       513 R~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      |+|||++|++||+++|+.||+|
T Consensus       400 ~~aA~~~a~~rv~~a~~~~G~~  421 (421)
T 1v9l_A          400 RDAAIVTALERIYNAMKIRGWI  421 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999986

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=100.00  E-value=1.1e-115  Score=933.21  Aligned_cols=420  Identities=30%  Similarity=0.418  Sum_probs=390.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEe
Q psy1913          39 KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHH  118 (535)
Q Consensus        39 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H  118 (535)
                      ..+|+|++++..+|++++.+++  +         .|+   ....+++++|++|+|+++|++||.+|+|++++|+|||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~--~---------~~~---~~~~~~~~~l~~Per~i~~~vp~~~d~G~~~v~~G~rv~h   81 (449)
T 1bgv_A           16 ADEPEFVQTVEEVLSSLGPVVD--A---------HPE---YEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQF   81 (449)
T ss_dssp             TTCHHHHHHHHHHHHTTHHHHH--T---------CHH---HHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CCCccHHHHHHHHHHHHHHHhc--c---------Chh---hhhhhHHHHhcCCceEEEEEEEEEeCCCCEEEEeEEEEEE
Confidence            3468999999999999999986  2         111   0123599999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCC
Q psy1913         119 CTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGI  198 (535)
Q Consensus       119 ~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~  198 (535)
                      |+++||+||||||||+++++||++||++|||||||++||||||||||.+||+.+|+.|++|++|+|+++|.+  +|||+.
T Consensus        82 n~~~GPakGGlR~~p~v~~~ev~~La~~mt~KnAl~~lP~GGgKGGi~~dP~~~s~~e~~r~~r~f~~~L~~--~ig~~~  159 (449)
T 1bgv_A           82 NGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDI  159 (449)
T ss_dssp             ECSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGG--GCBTTT
T ss_pred             cCCcCCCCCCeeecCCCCHHHHHHHHHHHHHHHHhhCCCCCCccEEEECCCccCCHHHHHHHHHHHHHHhhh--eeCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986  899999


Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      ||||||+||++++|+||+++|+++.+..   .++++||||+.+|||.+|.++|||||++++++++      +.+|.  ++
T Consensus       160 dvpA~DvGt~~~~m~~~~~~y~~~~~~~---~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~------~~~G~--~l  228 (449)
T 1bgv_A          160 DVPAGDLGVGAREIGYMYGQYRKIVGGF---YNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVM------KHEND--TL  228 (449)
T ss_dssp             EEEECBTTBCHHHHHHHHHHHHHHHTSC---CGGGSSSCCGGGTCCTTTTTHHHHHHHHHHHHHH------HHTTC--CS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhcCCC---cCceEecCCcccCCCCCcccchhHHHHHHHHHHH------HHccC--Cc
Confidence            9999999999999999999999988864   6799999999999999999999999999999655      45774  68


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC----CHHHHHHHHHHc-CCcccCCC---CcccCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI----NYKDLHTYKITK-GTIKGYPG---TKSAPT  350 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL----Di~~L~~~~~~~-g~v~~~~~---a~~i~~  350 (535)
                      +|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  |    |+++|+++++++ +++.+|+.   ++.+++
T Consensus       229 ~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~G--i~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~~  306 (449)
T 1bgv_A          229 VGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEG--ITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG  306 (449)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTC--SCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEET
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCc--CCCHHHHHHHHHHHhccCCChhhcccccCCEEeCc
Confidence            9999999999999999999999999999999999999999999  9    788999999886 78888865   677877


Q ss_pred             -CCccccceEEeeccccccccccccccccc---eEEEecCCCCCCHHHHHHHHhC-CceeeccccccccCcchhhHhhhh
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLKK-NVLIIPDIFANAGGVTVSYFEWLK  425 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i~A---kiIvEgAN~p~T~eA~~iL~~r-GI~viPD~laNaGGVivSy~Ew~q  425 (535)
                       ++|+++||||+|||++|+||.+||++|+|   |+|+||||+|+||+|+++|++| ||+|+||+++|||||++|||||+|
T Consensus       307 ~e~~~~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~~~l~~~~Gi~~~PD~~aNaGGV~~S~~E~~q  386 (449)
T 1bgv_A          307 EKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQ  386 (449)
T ss_dssp             CCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHH
T ss_pred             hhhhcCCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHHHHHHHcCCEEEEChHHhcCCCceeehhhhhc
Confidence             89999999999999999999999999998   9999999999999999999999 999999999999999999999999


Q ss_pred             ccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK  505 (535)
Q Consensus       426 n~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~  505 (535)
                      |+++++|       +++                                        +|+++|+++|.++|+.|++++++
T Consensus       387 n~~~~~w-------~~e----------------------------------------ev~~~L~~~m~~~~~~v~~~a~~  419 (449)
T 1bgv_A          387 NSERLSW-------TAE----------------------------------------EVDSKLHQVMTDIHDGSAAAAER  419 (449)
T ss_dssp             HHHTSCC-------CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccc-------cHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987644       653                                        28999999999999999999999


Q ss_pred             cCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         506 SDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       506 ~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      |+...++|+|||+.|++||++||+.||+|
T Consensus       420 ~~~~~~~~~~A~i~~~~rv~~a~~~~G~~  448 (449)
T 1bgv_A          420 YGLGYNLVAGANIVGFQKIADAMMAQGIA  448 (449)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             hCCCCCHHHHhhHHHHHHHHHHHHhcCcc
Confidence            97555999999999999999999999965

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=100.00  E-value=9.2e-104  Score=838.40  Aligned_cols=412  Identities=35%  Similarity=0.616  Sum_probs=389.8

Q ss_pred             CCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecC
Q psy1913          41 NPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCT  120 (535)
Q Consensus        41 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~  120 (535)
                      +++||++++.+|++|+.+++  +                 +|+++++|++|+|+++|++||+||+|++++|+|||+|||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~-----------------~~~~~~~l~~p~r~~~~~~p~~~d~G~~~~~~g~rv~~~~   62 (419)
T 1gtm_A            2 EADPYEIVIKQLERAAQYME--I-----------------SEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNW   62 (419)
T ss_dssp             -CTHHHHHHHHHHHHGGGSC--C-----------------CHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             CccHHHHHHHHHHHHHHHhC--C-----------------ChhhhhcCCCCceEEEEEEEEEecCCCEEEEEEEEEEECC
Confidence            57899999999999999987  3                 5689999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcc
Q psy1913         121 HKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDV  200 (535)
Q Consensus       121 ~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~di  200 (535)
                      ++||+||||||||+++++||++||++|||||||++||||||||||.+||+.+|+.|+||++|+|+++|.+  +|||++||
T Consensus        63 ~~Gp~kGG~R~~~~~~~~ev~~La~~mt~Knal~~lp~GG~Kggi~~dP~~~s~~e~~~~~r~f~~~l~~--~~g~~~dv  140 (419)
T 1gtm_A           63 ARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDI  140 (419)
T ss_dssp             TTSSEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEE
T ss_pred             CCCCCcCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHHH--hcCCCcEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997  99999999


Q ss_pred             cCCCCCCChhhHHHHHHHHhhHhCCCccCCC--ceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         201 PAPDYNTSAREMSWFYDAYAKTLGSTNINAL--GMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       201 papDvgT~~~~Mawi~d~y~~~~G~~~~~~~--~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      ||||+||++++|+||+++|++..|..   .+  +++||||+.+|||.+|.++|||||++++++++      +.+|.+ +|
T Consensus       141 ~a~D~gt~~~~m~~~~~~y~~~~~~~---~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~------~~~G~~-~l  210 (419)
T 1gtm_A          141 PAPDVYTNPQIMAWMMDEYETISRRK---TPAFGIITGKPLSIGGSLGRIEATARGASYTIREAA------KVLGWD-TL  210 (419)
T ss_dssp             CCBCTTCCHHHHHHHHHHHHHHHTTS---SCGGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHH------HHTTCS-CS
T ss_pred             eCCCCCCCHHHHHHHHHHHHHhhCCC---CCccceEecCcchhCCCCCCCcchhhHHHHHHHHHH------HHhCCc-cc
Confidence            99999999999999999999999875   45  89999999999999999999999999999555      457863 38


Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDK  356 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~  356 (535)
                      +|+||.||||||||+++|++|++ .|++|++++|++|.+|+++|  +|+++|+++++..+++..|+..+.++. +++..+
T Consensus       211 ~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~g--vdl~~L~~~~d~~~~l~~l~~t~~i~~~~l~~mk  288 (419)
T 1gtm_A          211 KGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDG--LNADEVLKWKNEHGSVKDFPGATNITNEELLELE  288 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEE--ECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccC--CCHHHHHHHHHhcCEeecCccCeeeCHHHHHhCC
Confidence            99999999999999999999999 99999999999999999999  999999999988788888887777766 788899


Q ss_pred             ceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMS  436 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~  436 (535)
                      ||||||||.+++|+++++..++++.|+|+||.|+|++++.+|..+||++.||+++|+|||++|||||+||+++++|    
T Consensus       289 ~dilIn~ArG~~Vde~a~~aL~~~~I~~aAneP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w----  364 (419)
T 1gtm_A          289 VDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYW----  364 (419)
T ss_dssp             CSEEEECSCSCCBCTTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCC----
T ss_pred             CCEEEECCCcccCCHHHHHHhcCCEEEEeeCCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehhhhccccccc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998765    


Q ss_pred             cccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy1913         437 FGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAA  516 (535)
Q Consensus       437 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AA  516 (535)
                         +.+                                        +|+++|+++|.++|.++++.|++++  +|+|+||
T Consensus       365 ---~~~----------------------------------------ev~~~l~~~m~~~~~~~~~~a~~~~--~~~~~aA  399 (419)
T 1gtm_A          365 ---TIE----------------------------------------EVRERLDKKMTKAFYDVYNIAKEKN--IHMRDAA  399 (419)
T ss_dssp             ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHH
T ss_pred             ---CHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--cCHHHHH
Confidence               553                                        3899999999999999999999995  7999999


Q ss_pred             hHHHHHHHHHHHHHcCCC
Q psy1913         517 YCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       517 y~~ai~rv~~a~~~~G~~  534 (535)
                      |++|++||+++|+.||+|
T Consensus       400 ~~~a~~rv~~a~~~~g~~  417 (419)
T 1gtm_A          400 YVVAVQRVYQAMLDRGWV  417 (419)
T ss_dssp             HHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999987

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=100.00  E-value=1.1e-85  Score=686.10  Aligned_cols=335  Identities=26%  Similarity=0.338  Sum_probs=297.2

Q ss_pred             CCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHH----HHHHHHHHhhhhhccccCCCCcceEEE
Q psy1913          90 NYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD----EVKALAALMTYKNSCSNVPFGGAKGGI  165 (535)
Q Consensus        90 ~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~d----Ev~aLA~~MT~K~Al~~lP~GGaKGgI  165 (535)
                      .|++++   |..+...|.    +|||+|||+++||+||||||||++|.+    |+++||++|||||||++||||||||||
T Consensus         9 ~~e~v~---~~~d~~~~~----~~~~~~h~~~~GP~kGG~R~~p~v~~~~~~~ev~~La~~mt~K~al~~lp~GG~Kggi   81 (355)
T 1c1d_A            9 DGEMTV---TRFDAMTGA----HFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVI   81 (355)
T ss_dssp             CSSEEE---EEEETTTTE----EEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred             CccEEE---EEEccccce----EEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeE
Confidence            455544   455555665    999999999999999999999999876    899999999999999999999999999


Q ss_pred             ec-CCCC-CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCC
Q psy1913         166 RI-DPSK-YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGG  243 (535)
Q Consensus       166 ~~-dP~~-~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GG  243 (535)
                      ++ ||+. +|..++|+++|+|.+.|..  ++|  .|||||||||++++|+||+++|+            ++||||+.+||
T Consensus        82 ~~~dP~~~~s~~~~e~~~r~~~~~~~~--l~g--~~ipa~D~gt~~~~m~~~~~~~~------------~~tGk~~~~GG  145 (355)
T 1c1d_A           82 ALPAPRHSIDPSTWARILRIHAENIDK--LSG--NYWTGPDVNTNSADMDTLNDTTE------------FVFGRSLERGG  145 (355)
T ss_dssp             ECSSCGGGCCHHHHHHHHHHHHHHHHH--TTT--SEEEEECTTCCHHHHHHHHHHCS------------CBCCCCGGGTS
T ss_pred             eccCcccccChhhHHHHHHHHHHHHHH--hcC--CcccCCCCCCCHHHHHHHHHhcC------------eeeccchhhCC
Confidence            99 9999 9999999999999999886  666  49999999999999999999983            48999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCC
Q psy1913         244 IRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTE  323 (535)
Q Consensus       244 s~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~d  323 (535)
                      |.+|.++|||||+++++++++      .+|. ++++|+||+||||||||+++|++|++.|++|| ++|            
T Consensus       146 s~~~~~aTg~Gv~~~~~~~~~------~~G~-~~L~GktV~I~G~GnVG~~~A~~l~~~GakVv-vsD------------  205 (355)
T 1c1d_A          146 AGSSAFTTAVGVFEAMKATVA------HRGL-GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VAD------------  205 (355)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHH------HTTC-CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC------------
T ss_pred             CCCchhHHHHHHHHHHHHHHH------hcCC-CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEe------------
Confidence            999999999999999996654      5675 35899999999999999999999999999999 665            


Q ss_pred             CCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCC-HHHHHHHHhC
Q psy1913         324 INYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKK  401 (535)
Q Consensus       324 LDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T-~eA~~iL~~r  401 (535)
                      .|.+. .++.++.       +++.++. ++|..+||||+|||++++||.+|+..++|++|+|+||+|+| ++|+++|+++
T Consensus       206 ~~~~~-~~~a~~~-------ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~~~lk~~iVie~AN~p~t~~eA~~~L~~~  277 (355)
T 1c1d_A          206 TDTER-VAHAVAL-------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHAR  277 (355)
T ss_dssp             SCHHH-HHHHHHT-------TCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHT
T ss_pred             CCccH-HHHHHhc-------CCEEeChHHhhcCccceecHhHHHhhcCHHHHhhCCCCEEEECCCCCCCCHHHHHHHHhC
Confidence            45554 4455443       4566666 89999999999999999999999999999999999999988 4999999999


Q ss_pred             CceeeccccccccCcchhh-HhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccch
Q psy1913         402 NVLIIPDIFANAGGVTVSY-FEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATE  480 (535)
Q Consensus       402 GI~viPD~laNaGGVivSy-~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e  480 (535)
                      ||+|+||+++||||||+|| |||.             .|+++                                      
T Consensus       278 gIlv~Pd~~aNaGGV~~s~~~E~~-------------~w~~e--------------------------------------  306 (355)
T 1c1d_A          278 GILYAPDFVANAGGAIHLVGREVL-------------GWSES--------------------------------------  306 (355)
T ss_dssp             TCEECCHHHHTTHHHHHHHHHHTT-------------CCCHH--------------------------------------
T ss_pred             CEEEECCeEEcCCCeeeeeeehhc-------------CCCHH--------------------------------------
Confidence            9999999999999999999 9992             46774                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHc
Q psy1913         481 KDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEA  531 (535)
Q Consensus       481 ~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~  531 (535)
                        +|+++|+++| ++|++|++.+++++  +++|+|||++|++||+++|..+
T Consensus       307 --~v~~~l~~i~-~~~~~i~~~~~~~~--~~~~~aA~~~a~~rv~~a~~~~  352 (355)
T 1c1d_A          307 --VVHERAVAIG-DTLNQVFEISDNDG--VTPDEAARTLAGRRAREASTTT  352 (355)
T ss_dssp             --HHHHHHHTHH-HHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHTC---
T ss_pred             --HHHHHHHHHH-HHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHHhhc
Confidence              2888999999 89999999999995  8999999999999999998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=100.00  E-value=1.1e-82  Score=665.96  Aligned_cols=336  Identities=24%  Similarity=0.286  Sum_probs=297.0

Q ss_pred             CCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHH----HHHHHHHHhhhhhccccCCCCcceEEEe
Q psy1913          91 YSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD----EVKALAALMTYKNSCSNVPFGGAKGGIR  166 (535)
Q Consensus        91 p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~d----Ev~aLA~~MT~K~Al~~lP~GGaKGgI~  166 (535)
                      |+++   .|..+...|.    +|||+|||+++||+||||||||++|.+    |+++||+||||||||++||||||||||+
T Consensus        12 ~e~v---~~~~d~~~~~----~~~~~~h~~~~Gp~kGG~R~~p~v~~~~~~~e~~~La~~mt~K~al~~lp~GG~Kggi~   84 (364)
T 1leh_A           12 YEQL---VFCQDEASGL----KAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVII   84 (364)
T ss_dssp             CCEE---EEEEETTTTE----EEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEE
T ss_pred             CeEE---EEEEccCcce----EEEEEEECCCCCCCCCcEEecCCCChHHHHHHHHHHHHHHHHHHHhcCCCCcCcceEEe
Confidence            5554   4555566775    999999999999999999999999977    8999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCC
Q psy1913         167 IDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRG  246 (535)
Q Consensus       167 ~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~g  246 (535)
                      +||+.++..+   ++|+|.+.+..  ++|  .||||||+||++++|+||+++|+            ++||||+.+|||.+
T Consensus        85 ~dP~~~~~~~---~~r~~~~~~~~--l~g--~~i~A~D~Gt~~~~m~~l~~~~~------------~~tGK~~~~ggs~~  145 (364)
T 1leh_A           85 GDPFADKNED---MFRALGRFIQG--LNG--RYITAEDVGTTVDDMDLIHQETD------------YVTGISPAFGSSGN  145 (364)
T ss_dssp             SCTTTTCCHH---HHHHHHHHHHT--TTT--SEEBCBCTTCCHHHHHHHHTTCS------------CBCSCCHHHHHHCC
T ss_pred             CCCCCCCHHH---HHHHHHHHHHH--hcC--ceEEcccCCCCHHHHHHHHHhcc------------hhcccccccCCCCC
Confidence            9999987555   55666665654  555  49999999999999999999873            47999999999999


Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCH
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINY  326 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi  326 (535)
                      |.++||+||++++++++++     .+|. ++|+|+||+||||||||+++|+.|++.|++|| |            +|+|.
T Consensus       146 ~~~aTg~GV~~~~~~~~~~-----~~G~-~~L~GktV~V~G~G~VG~~~A~~L~~~GakVv-v------------~D~~~  206 (364)
T 1leh_A          146 PSPVTAYGVYRGMKAAAKE-----AFGS-DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV-V------------TDVNK  206 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----HHSS-CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-E------------ECSCH
T ss_pred             cccchhhHHHHHHHHHHHh-----hccc-cCCCcCEEEEECchHHHHHHHHHHHHCCCEEE-E------------EcCCH
Confidence            9999999999999966653     2574 35899999999999999999999999999999 4            44788


Q ss_pred             HHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCC-HHHHHHHHhCCce
Q psy1913         327 KDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVL  404 (535)
Q Consensus       327 ~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T-~eA~~iL~~rGI~  404 (535)
                      +++.++.++.+       ++.++. ++|..+|||++||+++++|+.+++..++|++|+|+||+|+| +++.++|+++||+
T Consensus       207 ~~l~~~a~~~g-------a~~v~~~~ll~~~~DIvip~a~~~~I~~~~~~~lg~~iV~e~An~p~t~~ea~~~L~~~Gi~  279 (364)
T 1leh_A          207 AAVSAAVAEEG-------ADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIV  279 (364)
T ss_dssp             HHHHHHHHHHC-------CEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHcC-------CEEEChHHHhccCCcEeeccchHHHhCHHHHHhCCCcEEEeCCCCCcccHHHHHHHHhCCCE
Confidence            88888887753       455665 78889999999999999999999999999999999999977 5999999999999


Q ss_pred             eeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHH
Q psy1913         405 IIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIV  484 (535)
Q Consensus       405 viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V  484 (535)
                      |+||+++|||||++|||||+             .|+++                                        +|
T Consensus       280 ~~Pd~~~NaGGv~~s~~E~~-------------~~~~e----------------------------------------~v  306 (364)
T 1leh_A          280 YAPDYVINAGGVINVADELY-------------GYNRT----------------------------------------RA  306 (364)
T ss_dssp             ECCHHHHTTHHHHHHHHGGG-------------CCCHH----------------------------------------HH
T ss_pred             EecceeecCCceEEEEEeec-------------CCCHH----------------------------------------HH
Confidence            99999999999999999992             46774                                        28


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         485 QSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       485 ~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +++|+.+| ++|++|++.+++++  +++|+|||++|++||+++++.||+|
T Consensus       307 ~~~l~~i~-~~~~~i~~~~~~~~--~~~~~aA~~~a~~ri~~a~~~~~~~  353 (364)
T 1leh_A          307 MKRVDGIY-DSIEKIFAISKRDG--VPSYVAADRMAEERIAKVAKARSQF  353 (364)
T ss_dssp             HHHHTHHH-HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHHHhCCcc
Confidence            88999998 89999999999985  8999999999999999999999987

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=97.82  E-value=5.6e-05  Score=77.74  Aligned_cols=83  Identities=18%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHH-------CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRR-------GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT  350 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e-------~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~  350 (535)
                      ++..+|+|.|+|+||+.+++.|.+       .+.+|++|+|++...++++   +|++.+.+.+++.+.+..+    .++.
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~---idl~~~~~~~~~~g~~~~~----~~d~   74 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRN---LDISSIISNKEKTGRISDR----AFSG   74 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSS---CCHHHHHHHHHHHSCSCSS----BCCS
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccc---cCHHHHHHHhhhcCCCCcc----cCCH
Confidence            345799999999999999999987       3679999999999999865   8888887776666644322    1233


Q ss_pred             -CCc-cccceEEeeccccc
Q psy1913         351 -DIM-FDKVDILVPAAIEK  367 (535)
Q Consensus       351 -ell-~~~~DILiPaA~~~  367 (535)
                       +++ ..++||++.|+...
T Consensus        75 ~e~l~~~~iDvVVe~T~~~   93 (325)
T 3ing_A           75 PEDLMGEAADLLVDCTPAS   93 (325)
T ss_dssp             GGGGTTSCCSEEEECCCCC
T ss_pred             HHHhcCCCCCEEEECCCCc
Confidence             555 56899999999765

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.59  E-value=0.00015  Score=77.80  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=68.6

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..|.  .+.|++|.|.|||+||+.+|+.|...|++|++             +|.|+....+....        +.+.++
T Consensus       239 Ratg~--~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv-------------~d~dp~~a~~A~~~--------G~~vv~  295 (464)
T 3n58_A          239 RGTDV--MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKV-------------TEVDPICALQAAMD--------GFEVVT  295 (464)
T ss_dssp             HHHCC--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHHT--------TCEECC
T ss_pred             HhcCC--cccCCEEEEECcCHHHHHHHHHHHHCCCEEEE-------------EeCCcchhhHHHhc--------Cceecc
Confidence            34554  48999999999999999999999999999998             66777654443322        222222


Q ss_pred             C-CCccccceEEeeccc-ccccccccccccc-ceEEEecCCCCC
Q psy1913         350 T-DIMFDKVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGPL  390 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p~  390 (535)
                      - +++ ..+||++.|+. .+.|+.+....++ --+|+..+.+..
T Consensus       296 LeElL-~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          296 LDDAA-STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             HHHHG-GGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred             HHHHH-hhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence            2 444 37999999875 4577777777775 356666666653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.54  E-value=0.00037  Score=74.44  Aligned_cols=96  Identities=19%  Similarity=0.284  Sum_probs=71.1

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT  350 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~  350 (535)
                      ..+.  .+.|++|.|.|+|++|+.+|+.|...|++|++             +|.|.....+.... |       .+..+-
T Consensus       204 atg~--~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv-------------~D~~p~~a~~A~~~-G-------~~~~sL  260 (436)
T 3h9u_A          204 ATDV--MIAGKTACVCGYGDVGKGCAAALRGFGARVVV-------------TEVDPINALQAAME-G-------YQVLLV  260 (436)
T ss_dssp             HHCC--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-T-------CEECCH
T ss_pred             hcCC--cccCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-------------ECCChhhhHHHHHh-C-------CeecCH
Confidence            3454  48999999999999999999999999999988             55666555444332 1       222222


Q ss_pred             -CCccccceEEeeccc-ccccccccccccc-ceEEEecCCCCC
Q psy1913         351 -DIMFDKVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGPL  390 (535)
Q Consensus       351 -ell~~~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p~  390 (535)
                       +++ ..+||++.|.. .+.|+.+....++ --+|+..++++.
T Consensus       261 ~eal-~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          261 EDVV-EEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             HHHT-TTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGG
T ss_pred             HHHH-hhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCC
Confidence             444 37999998775 5788988888886 368888888874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.52  E-value=0.00032  Score=74.86  Aligned_cols=92  Identities=17%  Similarity=0.291  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|.|.|+|++|+.+|+.|...|++|++             +|.|+....+.... |       .+..+- +++ .
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv-------------~D~dp~ra~~A~~~-G-------~~v~~Leeal-~  274 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYV-------------TEIDPICALQACMD-G-------FRLVKLNEVI-R  274 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-T-------CEECCHHHHT-T
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEE-------------EeCChhhhHHHHHc-C-------CEeccHHHHH-h
Confidence            47999999999999999999999999999988             66776554443322 1       122222 333 3


Q ss_pred             cceEEeeccc-ccccccccccccc-ceEEEecCCCCC
Q psy1913         356 KVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGPL  390 (535)
Q Consensus       356 ~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p~  390 (535)
                      .+||++.|+. .+.|+.+....++ -.+|+..++++.
T Consensus       275 ~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            7899999865 6778877777776 357888888875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.42  E-value=0.0013  Score=64.63  Aligned_cols=125  Identities=17%  Similarity=0.118  Sum_probs=81.3

Q ss_pred             hCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         272 IGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       272 ~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      .|.  +++| +|.|.|+|++|+.+++.|.+.|++|+. .            +-+.+...+..++.+.       . ++. 
T Consensus       111 ~~~--~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v-~------------~r~~~~~~~l~~~~~~-------~-~~~~  166 (263)
T 2d5c_A          111 GGI--PLKG-PALVLGAGGAGRAVAFALREAGLEVWV-W------------NRTPQRALALAEEFGL-------R-AVPL  166 (263)
T ss_dssp             TTC--CCCS-CEEEECCSHHHHHHHHHHHHTTCCEEE-E------------CSSHHHHHHHHHHHTC-------E-ECCG
T ss_pred             hCC--CCCC-eEEEECCcHHHHHHHHHHHHCCCEEEE-E------------ECCHHHHHHHHHHhcc-------c-hhhH
Confidence            454  4789 999999999999999999999996654 3            3455555555555432       1 222 


Q ss_pred             -CCccccceEEeeccccccccc--c--cccccc-ceEEEecCCCCC-CHHHHHHHHhCCceeeccccccccCcchhhHhh
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRK--S--NADKVQ-AKIIVEAANGPL-TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEW  423 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~--~--na~~i~-AkiIvEgAN~p~-T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew  423 (535)
                       ++  .+|||+|-|...+....  .  ..+.++ -++|++-+.+|. | +..+.++++|+.++|..-.-.+..+.++..|
T Consensus       167 ~~~--~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t-~l~~~a~~~g~~~v~g~~mlv~q~~~a~~~w  243 (263)
T 2d5c_A          167 EKA--REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWT-RFLREAKAKGLKVQTGLPMLAWQGALAFRLW  243 (263)
T ss_dssp             GGG--GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSC-HHHHHHHHTTCEEECSHHHHHHHHHHHHHHH
T ss_pred             hhc--cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCccc-HHHHHHHHCcCEEECcHHHHHHHHHHHHHHH
Confidence             34  78999999988653210  1  123343 358889887774 5 4556678899998876433333333334344

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.41  E-value=0.0031  Score=62.96  Aligned_cols=192  Identities=15%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc-cCC--CCcccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS-APT--DIMFDK  356 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~-i~~--ell~~~  356 (535)
                      .++|.|.|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..+. |       ... .+.  +++ .+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~-------------~dr~~~~~~~~~~~-g-------~~~~~~~~~e~~-~~   64 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWG-------------ADLNPQACANLLAE-G-------ACGAAASAREFA-GV   64 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-T-------CSEEESSSTTTT-TT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHHc-C-------CccccCCHHHHH-hc
Confidence            46899999999999999999999999887             44667777666543 2       222 222  333 47


Q ss_pred             ceEEeecccccccccc-------cccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         357 VDILVPAAIEKVIRKS-------NADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       357 ~DILiPaA~~~~It~~-------na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                      ||++|-|........+       -.+.++ -++|+...+.+  ++.+..+.+.++|+.++.  .--+||....  + -..
T Consensus        65 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~--~pv~g~~~~a--~-~g~  139 (303)
T 3g0o_A           65 VDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD--APVSGGAVKA--A-QGE  139 (303)
T ss_dssp             CSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE--CCEESCHHHH--H-TTC
T ss_pred             CCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe--CCCCCChhhh--h-cCC
Confidence            9999999876432222       223332 36777777654  234555678889998764  2234444211  0 000


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcch-hhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKS-AMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEK  505 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~  505 (535)
                      + .+    +... +++ ..+.+..+-+.    +|.++....+ ......+      .+++.-+...+...+.+...++++
T Consensus       140 l-~~----~~gg-~~~-~~~~~~~ll~~----~g~~~~~~~~~~g~a~~~------Kl~~N~~~~~~~~~~~Ea~~l~~~  202 (303)
T 3g0o_A          140 M-TV----MASG-SEA-AFTRLKPVLDA----VASNVYRISDTPGAGSTV------KIIHQLLAGVHIAAAAEAMALAAR  202 (303)
T ss_dssp             E-EE----EEEC-CHH-HHHHHHHHHHH----HEEEEEEEESSTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e-EE----EeCC-CHH-HHHHHHHHHHH----HCCCEEECCCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0 00    0001 221 11122222121    1221111111 1122222      256777777788888999999999


Q ss_pred             cCCCCCHHHHHh
Q psy1913         506 SDNKLDLRNAAY  517 (535)
Q Consensus       506 ~~~~~~lR~AAy  517 (535)
                      .+  +|..+..-
T Consensus       203 ~G--~d~~~~~~  212 (303)
T 3g0o_A          203 AG--IPLDVMYD  212 (303)
T ss_dssp             TT--CCHHHHHH
T ss_pred             cC--CCHHHHHH
Confidence            85  67665443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.40  E-value=0.0014  Score=68.81  Aligned_cols=156  Identities=16%  Similarity=0.165  Sum_probs=100.8

Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCC
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCM  278 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l  278 (535)
                      .|-....|++.-+++++.+     .|-       .|+.-|    |  ....+++-.++..+.++      .+.+|.  .+
T Consensus        61 ~I~~~~~G~D~iD~~~~~~-----~gI-------~v~n~p----g--~~~~~vAE~~l~~lL~l------~r~~~~--~l  114 (380)
T 2o4c_A           61 FVGTCTIGTDHLDLDYFAE-----AGI-------AWSSAP----G--CNARGVVDYVLGCLLAM------AEVRGA--DL  114 (380)
T ss_dssp             EEEECSSCSTTBCHHHHHH-----HTC-------EEECCT----T--TTHHHHHHHHHHHHHHH------HHHHTC--CG
T ss_pred             EEEEcCcccchhhHHHHHh-----CCC-------EEEeCC----C--cChHHHHHHHHHHHHHH------Hhhhhc--cc
Confidence            4566778888878888753     232       244444    1  11345555555555533      345664  58


Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~  357 (535)
                      .|+||.|+|+|++|+.+|+.|...|++|++               .|...-.   ...       +....+. +++. +|
T Consensus       115 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~---------------~d~~~~~---~~~-------g~~~~~l~ell~-~a  168 (380)
T 2o4c_A          115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLV---------------CDPPRQA---REP-------DGEFVSLERLLA-EA  168 (380)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHTTCEEEE---------------ECHHHHH---HST-------TSCCCCHHHHHH-HC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEE---------------EcCChhh---hcc-------CcccCCHHHHHH-hC
Confidence            999999999999999999999999999988               3332211   111       1111122 4443 89


Q ss_pred             eEEeeccc---------cccccccccccccc-eEEEecCCCCC-CH-HHHHHHHhCCceee
Q psy1913         358 DILVPAAI---------EKVIRKSNADKVQA-KIIVEAANGPL-TP-AAHAMLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~---------~~~It~~na~~i~A-kiIvEgAN~p~-T~-eA~~iL~~rGI~vi  406 (535)
                      ||++.|..         .+.|+.+....++. .+++..+.+++ .. +..+.|.+++|.-+
T Consensus       169 DvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A  229 (380)
T 2o4c_A          169 DVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEV  229 (380)
T ss_dssp             SEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceE
Confidence            99999874         45566666666763 68899999984 43 34567888877654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00073  Score=69.48  Aligned_cols=124  Identities=20%  Similarity=0.355  Sum_probs=75.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      .+|+|.|+|+||+.+++.|.+.         +.+|++|+|++....++    +|.......+...+.+..     ..+. 
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----id~~~~~~~~~~~~~~~~-----~~d~~   73 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD----FSLVEALRMKRETGMLRD-----DAKAI   73 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS----CCHHHHHHHHHHHSSCSB-----CCCHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc----cCHHHHHhhhccCccccC-----CCCHH
Confidence            5899999999999999999864         78999999999888864    676655443332222110     0122 


Q ss_pred             CCc-cccceEEeeccccccccccccccc-----c--ceEEEecCCCCCCH---HHHHHHHhCCceeeccccccccCcc
Q psy1913         351 DIM-FDKVDILVPAAIEKVIRKSNADKV-----Q--AKIIVEAANGPLTP---AAHAMLLKKNVLIIPDIFANAGGVT  417 (535)
Q Consensus       351 ell-~~~~DILiPaA~~~~It~~na~~i-----~--AkiIvEgAN~p~T~---eA~~iL~~rGI~viPD~laNaGGVi  417 (535)
                      +++ ..++|+++-|+..+.-+.+ +..+     +  ..+|+| .-.|++.   +..++.+++|+.+.  |-++.|+-+
T Consensus        74 ~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~-NKkpla~~~~eL~~~A~~~g~~~~--~ea~v~~g~  147 (327)
T 3do5_A           74 EVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTS-NKGPLVAEFHGLMSLAERNGVRLM--YEATVGGAM  147 (327)
T ss_dssp             HHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEEC-CSHHHHHHHHHHHHHHHHTTCCEE--CGGGSSTTS
T ss_pred             HHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEec-CchhhHHHHHHHHHHHHhhCCcEE--EEEEeeecC
Confidence            555 4589999999976543333 3222     2  355555 2234333   33344567888665  445555443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.35  E-value=0.00069  Score=67.81  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=73.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc--CC--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA--PT--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i--~~--el  352 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++             .|-+.+.+.... +.|       .+.+  ..  ++
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~-------------~dr~~~~~~~~~-~~g-------~~~~~~~~l~~~  210 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGAKVKV-------------GARESDLLARIA-EMG-------MEPFHISKAAQE  210 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESSHHHHHHHH-HTT-------SEEEEGGGHHHH
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHH-HCC-------CeecChhhHHHH
Confidence            58999999999999999999999999999887             224444443332 222       2222  11  33


Q ss_pred             ccccceEEeecccccccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      + ..|||++-|+..+.++.+....++ -.+|+.-+-+|..-+. +...++|+.++
T Consensus       211 l-~~aDvVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~  263 (293)
T 3d4o_A          211 L-RDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKAL  263 (293)
T ss_dssp             T-TTCSEEEECCSSCCBCHHHHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEE
T ss_pred             h-cCCCEEEECCChHHhCHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEE
Confidence            3 479999999988888776666664 3577777766632122 45577788764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.31  E-value=0.00041  Score=69.63  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc--CC--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA--PT--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i--~~--el  352 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++             .|-+.+.+....+ .|       .+.+  ..  ++
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~-------------~d~~~~~~~~~~~-~g-------~~~~~~~~l~~~  212 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGANVKV-------------GARSSAHLARITE-MG-------LVPFHTDELKEH  212 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESSHHHHHHHHH-TT-------CEEEEGGGHHHH
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH-CC-------CeEEchhhHHHH
Confidence            58999999999999999999999999999887             3344454443332 22       2211  12  33


Q ss_pred             ccccceEEeecccccccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceee--ccccccccCc
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVLII--PDIFANAGGV  416 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~vi--PD~laNaGGV  416 (535)
                      + ..|||++-|+..+.++.+....++ -.+|+.-+-+|..-+. +...++|+.++  |..-...+..
T Consensus       213 l-~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~~g~v~~a  277 (300)
T 2rir_A          213 V-KDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGLPGIVAPK  277 (300)
T ss_dssp             S-TTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHHHHCHH
T ss_pred             h-hCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCCCCcHHHH
Confidence            3 489999999998888877666664 3577887777732222 45677898765  6544333333

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.15  E-value=0.0027  Score=62.74  Aligned_cols=190  Identities=12%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..+.        +....+.  +++ .+||
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~-------------~dr~~~~~~~~~~~--------g~~~~~~~~~~~-~~aD   59 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTI-------------WNRSPEKAEELAAL--------GAERAATPCEVV-ESCP   59 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSGGGGHHHHHT--------TCEECSSHHHHH-HHCS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHC--------CCeecCCHHHHH-hcCC
Confidence            5899999999999999999999999876             33444444444432        2232232  332 4799


Q ss_pred             EEeecccccccccccc-------ccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccc
Q psy1913         359 ILVPAAIEKVIRKSNA-------DKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS  428 (535)
Q Consensus       359 ILiPaA~~~~It~~na-------~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~  428 (535)
                      +++-|.....-..+-+       +.+ .-++|+...+.+  ++.+..+.+.++|+.++.  ..-.||....  +  +...
T Consensus        60 vvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~--~pv~g~~~~a--~--~g~l  133 (287)
T 3pef_A           60 VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE--APVSGSKKPA--E--DGTL  133 (287)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE--CCEECCHHHH--H--HTCE
T ss_pred             EEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE--CCCcCCHHHH--h--cCCE
Confidence            9999987432222222       223 235777776654  234556778899998763  2233443221  0  0000


Q ss_pred             cccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1913         429 HSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDN  508 (535)
Q Consensus       429 ~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~  508 (535)
                      .+    |... +++ ..+.+..+-+.    +|.+.....+......+      .+++.-+...+...+.+...++++.+ 
T Consensus       134 ~~----~~gg-~~~-~~~~~~~ll~~----~g~~~~~~g~~g~~~~~------Kl~~N~~~~~~~~~~~E~~~l~~~~G-  196 (287)
T 3pef_A          134 II----LAAG-DRN-LYDEAMPGFEK----MGKKIIHLGDVGKGAEM------KLVVNMVMGGMMACFCEGLALGEKAG-  196 (287)
T ss_dssp             EE----EEEE-CHH-HHHHHHHHHHH----HEEEEEECSSTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             EE----EEeC-CHH-HHHHHHHHHHH----hCCCeEEeCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            00    0001 221 11122222111    22211111112222222      25677777777888999999999985 


Q ss_pred             CCCHHHHH
Q psy1913         509 KLDLRNAA  516 (535)
Q Consensus       509 ~~~lR~AA  516 (535)
                       +|..+..
T Consensus       197 -~d~~~~~  203 (287)
T 3pef_A          197 -LATDAIL  203 (287)
T ss_dssp             -CCHHHHH
T ss_pred             -CCHHHHH
Confidence             6766543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.15  E-value=0.0019  Score=64.10  Aligned_cols=140  Identities=11%  Similarity=0.089  Sum_probs=88.9

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      .++.|+..+++          ..|.  ++++++|.|.|.|.+|+.+++.|.+.|++|+. .            +-+.+.+
T Consensus       111 Td~~G~~~~l~----------~~~~--~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v-~------------~r~~~~~  165 (275)
T 2hk9_A          111 TDWIGFLKSLK----------SLIP--EVKEKSILVLGAGGASRAVIYALVKEGAKVFL-W------------NRTKEKA  165 (275)
T ss_dssp             CHHHHHHHHHH----------HHCT--TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEE-E------------CSSHHHH
T ss_pred             CCHHHHHHHHH----------HhCC--CcCCCEEEEECchHHHHHHHHHHHHcCCEEEE-E------------ECCHHHH
Confidence            46788777766          2354  46899999999999999999999999996654 3            3455555


Q ss_pred             HHHHHHcCCcccCCCCcccCC--CCccccceEEeeccccccccc--cc--ccccc-ceEEEecCCCCCCHHHHHHHHhCC
Q psy1913         330 HTYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRK--SN--ADKVQ-AKIIVEAANGPLTPAAHAMLLKKN  402 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~--~n--a~~i~-AkiIvEgAN~p~T~eA~~iL~~rG  402 (535)
                      .+..++.+       ....+.  +.+ .+|||+|-|...+....  ..  ...++ -.+|++-+. ..|+-. +..+++|
T Consensus       166 ~~l~~~~g-------~~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~-~~t~ll-~~a~~~g  235 (275)
T 2hk9_A          166 IKLAQKFP-------LEVVNSPEEVI-DKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY-KETKLL-KKAKEKG  235 (275)
T ss_dssp             HHHTTTSC-------EEECSCGGGTG-GGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS-SCCHHH-HHHHHTT
T ss_pred             HHHHHHcC-------CeeehhHHhhh-cCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-ChHHHH-HHHHHCc
Confidence            55443332       222222  333 48999999987654321  11  22343 368888888 555543 4456799


Q ss_pred             ceeeccccccccCcchhhHhhh
Q psy1913         403 VLIIPDIFANAGGVTVSYFEWL  424 (535)
Q Consensus       403 I~viPD~laNaGGVivSy~Ew~  424 (535)
                      +.++|..-.-.+.-+.++..|.
T Consensus       236 ~~~v~g~~mlv~q~~~a~~~w~  257 (275)
T 2hk9_A          236 AKLLDGLPMLLWQGIEAFKIWN  257 (275)
T ss_dssp             CEEECSHHHHHHHHHHHHHHHH
T ss_pred             CEEECCHHHHHHHHHHHHHHHH
Confidence            9998875444444444444443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.14  E-value=0.0037  Score=62.79  Aligned_cols=194  Identities=11%  Similarity=0.027  Sum_probs=105.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      +-++|.|.|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..+.        +....+.  +++ .+
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~-------------~dr~~~~~~~l~~~--------g~~~~~~~~~~~-~~   77 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTV-------------WNRTLSKCDELVEH--------GASVCESPAEVI-KK   77 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSGGGGHHHHHT--------TCEECSSHHHHH-HH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHC--------CCeEcCCHHHHH-Hh
Confidence            457999999999999999999999999876             33444444444432        2232232  333 47


Q ss_pred             ceEEeeccccccccccc-------cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         357 VDILVPAAIEKVIRKSN-------ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       357 ~DILiPaA~~~~It~~n-------a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                      |||+|-|........+-       .+.+ .-++|+.-.+.+  ++.+..+.+.++|+.++.--  -+|++... .   ..
T Consensus        78 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p--v~g~~~~a-~---~g  151 (310)
T 3doj_A           78 CKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGP--VSGSKKPA-E---DG  151 (310)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC--EECCHHHH-H---HT
T ss_pred             CCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCC--CCCChhHH-h---cC
Confidence            99999887643222222       2233 236777777654  33456677889999876421  22443221 1   00


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                      ...+-.|    . +++ ..+.+..+-+.    +|..+....+......+      .+++.-+-..+...+.+...++++.
T Consensus       152 ~l~i~~g----g-~~~-~~~~~~~ll~~----~g~~~~~~g~~g~a~~~------Kl~~N~~~~~~~~~~~Ea~~l~~~~  215 (310)
T 3doj_A          152 QLIILAA----G-DKA-LFEESIPAFDV----LGKRSFYLGQVGNGAKM------KLIVNMIMGSMMNAFSEGLVLADKS  215 (310)
T ss_dssp             CEEEEEE----E-CHH-HHHHHHHHHHH----HEEEEEECSSTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEc----C-CHH-HHHHHHHHHHH----hCCCEEEeCCcCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            0000000    1 221 11122222111    22211111112222222      2677778888888899999999998


Q ss_pred             CCCCCHHHHHhH
Q psy1913         507 DNKLDLRNAAYC  518 (535)
Q Consensus       507 ~~~~~lR~AAy~  518 (535)
                      +  +|..+..-+
T Consensus       216 G--~d~~~~~~~  225 (310)
T 3doj_A          216 G--LSSDTLLDI  225 (310)
T ss_dssp             T--SCHHHHHHH
T ss_pred             C--CCHHHHHHH
Confidence            5  676655433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.13  E-value=0.0011  Score=66.21  Aligned_cols=189  Identities=15%  Similarity=0.179  Sum_probs=104.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      .++|+|.|+|++|..+|+.|.+.|..|++             .|.+.+.+.+..+.        +....+.  ++..  |
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~-------------~dr~~~~~~~~~~~--------g~~~~~~~~~~~~--a   71 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTV-------------YDIRIEAMTPLAEA--------GATLADSVADVAA--A   71 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEE-------------ECSSTTTSHHHHHT--------TCEECSSHHHHTT--S
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHC--------CCEEcCCHHHHHh--C
Confidence            36899999999999999999999999876             22333334343332        2333333  4555  9


Q ss_pred             eEEeeccccccccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913         358 DILVPAAIEKVIRKSN----ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS  430 (535)
Q Consensus       358 DILiPaA~~~~It~~n----a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~  430 (535)
                      |++|-|........+-    .+.+ .-++|+...+.+  ++.+..+.+.++|+.++.-  --+||...  .+. ..+. +
T Consensus        72 Dvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~--a~~-g~l~-~  145 (296)
T 3qha_A           72 DLIHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDA--PVSGGAAA--AAR-GELA-T  145 (296)
T ss_dssp             SEEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEEC--CEESCHHH--HHH-TCEE-E
T ss_pred             CEEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeC--CCcCCHHH--Hhc-CCcc-E
Confidence            9999998754322222    2223 236777777665  3445667788899987632  12333321  110 0000 0


Q ss_pred             cccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy1913         431 SLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKL  510 (535)
Q Consensus       431 ~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~  510 (535)
                      --|    . +++ ..+.+..+.+.+    +.++....+......+      .+++.-+...+...+.+...++++.+  +
T Consensus       146 ~~g----g-~~~-~~~~~~~ll~~~----g~~~~~~g~~g~a~~~------Kl~~N~~~~~~~~~~~E~~~l~~~~G--~  207 (296)
T 3qha_A          146 MVG----A-DRE-VYERIKPAFKHW----AAVVIHAGEPGAGTRM------KLARNMLTFTSYAAACEAMKLAEAAG--L  207 (296)
T ss_dssp             EEE----C-CHH-HHHHHHHHHHHH----EEEEEEEESTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHTT--C
T ss_pred             Eec----C-CHH-HHHHHHHHHHHH----cCCeEEcCChhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence            000    1 222 112222222211    2211111112222222      37888888888999999999999985  7


Q ss_pred             CHHHH
Q psy1913         511 DLRNA  515 (535)
Q Consensus       511 ~lR~A  515 (535)
                      |..+.
T Consensus       208 d~~~~  212 (296)
T 3qha_A          208 DLQAL  212 (296)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87665

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.11  E-value=0.00071  Score=70.24  Aligned_cols=114  Identities=14%  Similarity=0.311  Sum_probs=77.1

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ++.++|.|+|+|++|..+|+.|.+.|..|++             .|.+.+.+.+..+.        +....+.  +++ .
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v-------------~dr~~~~~~~l~~~--------g~~~~~s~~e~~-~   77 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVV-------------YDLNVNAVQALERE--------GIAGARSIEEFC-A   77 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHTT--------TCBCCSSHHHHH-H
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHHHC--------CCEEeCCHHHHH-h
Confidence            3568999999999999999999999999887             45677776665543        1222222  333 2


Q ss_pred             cc---eEEeecccccccccccccc----c-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCc
Q psy1913         356 KV---DILVPAAIEKVIRKSNADK----V-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGV  416 (535)
Q Consensus       356 ~~---DILiPaA~~~~It~~na~~----i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGV  416 (535)
                      .|   ||+|-|.... ...+-+..    + .-.+|+...|.+  .+.+..+.|.++|+.+++-  --+||.
T Consensus        78 ~a~~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vda--pVsGg~  145 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDV--GTSGGI  145 (358)
T ss_dssp             HSCSSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEE--EEECGG
T ss_pred             cCCCCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeC--CCCCCH
Confidence            45   9999997766 22322222    3 247899999887  3456667889999998753  334554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.10  E-value=0.0013  Score=68.36  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|+||.|.|+|++|+.+|+.|...|++|++        ||+..  .+.+...+    .       +.+.++.  +++ 
T Consensus       161 ~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~--------~dr~~--~~~~~~~~----~-------g~~~~~~l~ell-  218 (351)
T 3jtm_A          161 DLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY--------HDRLQ--MAPELEKE----T-------GAKFVEDLNEML-  218 (351)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCEEEE--------ECSSC--CCHHHHHH----H-------CCEECSCHHHHG-
T ss_pred             cccCCEEeEEEeCHHHHHHHHHHHHCCCEEEE--------eCCCc--cCHHHHHh----C-------CCeEcCCHHHHH-
Confidence            58999999999999999999999999999886        55555  44443322    1       2233333  444 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      ..|||++-|..-     +.|+.+....++ -.+++.-|.+++ . ....+.|.+..|.
T Consensus       219 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  276 (351)
T 3jtm_A          219 PKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG  276 (351)
T ss_dssp             GGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc
Confidence            479999988763     356666556665 479999999984 3 3445678887775

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.07  E-value=0.0048  Score=66.37  Aligned_cols=197  Identities=13%  Similarity=0.042  Sum_probs=113.1

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      +..++|.|.|.|++|..+|+.|.+.|..|+.             .|.+.+.+.+..++.+   + .+....+.  ++...
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v-------------~~r~~~~~~~l~~~~~---~-~gi~~~~s~~e~v~~   75 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSI-------------FNRSREKTEEVIAENP---G-KKLVPYYTVKEFVES   75 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEE-------------ECSSHHHHHHHHHHST---T-SCEEECSSHHHHHHT
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHhhCC---C-CCeEEeCCHHHHHhC
Confidence            4678999999999999999999999999876             3356677766665432   0 12222222  33322


Q ss_pred             --cceEEeecccccccccccc----cccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         356 --KVDILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       356 --~~DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                        +||++|-|........+.+    +.++ -.+|+..+|+.  .|.+..+.|.++|+.++.  ...+||...     .++
T Consensus        76 l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~--~pv~gg~~~-----a~~  148 (480)
T 2zyd_A           76 LETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG--TGVSGGEEG-----ALK  148 (480)
T ss_dssp             BCSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE--EEEESHHHH-----HHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeC--CccccCHhH-----Hhc
Confidence              4999998877643333333    3333 36999999997  345566778889998873  244555422     111


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhhh-------hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK-------IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDI  499 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v  499 (535)
                      -..+..|    . +++ ..+.+..+   +.. ++.+       .....+.-....      ...++..+...+..++.+.
T Consensus       149 g~~i~~g----g-~~~-~~~~v~~l---l~~-~g~~~~dGe~~v~~~g~~G~g~~------~Kl~~N~~~~~~~~~laEa  212 (480)
T 2zyd_A          149 GPSIMPG----G-QKE-AYELVAPI---LTK-IAAVAEDGEPCVTYIGADGAGHY------VKMVHNGIEYGDMQLIAEA  212 (480)
T ss_dssp             CCEEEEE----S-CHH-HHHHHHHH---HHH-HSCBCTTSCBSBCCCBSTTHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEec----C-CHH-HHHHHHHH---HHH-HhccccCCCceEEEECCccHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            1111111    1 221 11222221   111 1111       111111111122      2367888899999999999


Q ss_pred             HHHHHH-cCCCCCHHHHH
Q psy1913         500 LEYAEK-SDNKLDLRNAA  516 (535)
Q Consensus       500 ~~~a~~-~~~~~~lR~AA  516 (535)
                      ..++++ .+  +|..+..
T Consensus       213 ~~l~~~~lG--l~~~~~~  228 (480)
T 2zyd_A          213 YSLLKGGLN--LTNEELA  228 (480)
T ss_dssp             HHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHhcC--CCHHHHH
Confidence            999999 66  6766554

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.02  E-value=0.00041  Score=71.24  Aligned_cols=105  Identities=16%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|+|+|++|+.+|+.|...|++|++        ||++.   +.+    ...+.|       ....+. +++ .
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~--------~d~~~---~~~----~~~~~g-------~~~~~l~e~l-~  199 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYY--------WSRHR---KVN----VEKELK-------ARYMDIDELL-E  199 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEE--------ECSSC---CHH----HHHHHT-------EEECCHHHHH-H
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEE--------ECCCc---chh----hhhhcC-------ceecCHHHHH-h
Confidence            68999999999999999999999999999876        34433   211    111222       121221 333 4


Q ss_pred             cceEEeeccccc-----cccccccccccceEEEecCCCCCC-HH-HHHHHHhCCce
Q psy1913         356 KVDILVPAAIEK-----VIRKSNADKVQAKIIVEAANGPLT-PA-AHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~~-----~It~~na~~i~AkiIvEgAN~p~T-~e-A~~iL~~rGI~  404 (535)
                      +||+++.|...+     .|+.+....++..+++..+.+++. .+ ..+.|.+..|.
T Consensus       200 ~aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~  255 (333)
T 2d0i_A          200 KSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLK  255 (333)
T ss_dssp             HCSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBC
T ss_pred             hCCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence            899999998765     444333444543388899998854 33 34667776554

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.01  E-value=0.001  Score=68.39  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=73.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++        ||+..  .+.+...+    .|       .+..+. +++ .
T Consensus       142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~--------~d~~~--~~~~~~~~----~g-------~~~~~l~ell-~  199 (330)
T 4e5n_A          142 GLDNATVGFLGMGAIGLAMADRLQGWGATLQY--------HEAKA--LDTQTEQR----LG-------LRQVACSELF-A  199 (330)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHTTTSCCEEEE--------ECSSC--CCHHHHHH----HT-------EEECCHHHHH-H
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE--------ECCCC--CcHhHHHh----cC-------ceeCCHHHHH-h
Confidence            58899999999999999999999999999987        55554  34332221    11       222222 444 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      .|||++-|..     .+.|+.+....++ -.+|+..|.+++ . ....+.|.+.+|.
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  256 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG  256 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence            7999998876     3456666666665 468999999984 3 3445678887775

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.99  E-value=0.0034  Score=62.03  Aligned_cols=190  Identities=14%  Similarity=0.093  Sum_probs=103.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|++|..+|+.|.+.|..|++             .|.+.+.+.+..+.        +....+.  +++ .+||
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~-------------~dr~~~~~~~~~~~--------g~~~~~~~~~~~-~~ad   59 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTV-------------WNRNPAKCAPLVAL--------GARQASSPAEVC-AACD   59 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEE-------------ECSSGGGGHHHHHH--------TCEECSCHHHHH-HHCS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHC--------CCeecCCHHHHH-HcCC
Confidence            4799999999999999999999999876             33444444444433        2222232  332 4799


Q ss_pred             EEeecccccccccc-------ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccc
Q psy1913         359 ILVPAAIEKVIRKS-------NADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS  428 (535)
Q Consensus       359 ILiPaA~~~~It~~-------na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~  428 (535)
                      ++|-|........+       -.+.+ .-++|+...+.+  ++.+..+.+.++|+.++.-  -..|+...  .+  .   
T Consensus        60 vvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~--pv~g~~~~--a~--~---  130 (287)
T 3pdu_A           60 ITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA--PVSGTKKP--AE--D---  130 (287)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC--CEECCHHH--HH--H---
T ss_pred             EEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC--CccCCHHH--Hh--c---
Confidence            99999876522222       12333 236777777654  2345566788899887632  23344311  11  0   


Q ss_pred             ccccccccc--ccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy1913         429 HSSLGRMSF--GYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKS  506 (535)
Q Consensus       429 ~~~~grl~~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~  506 (535)
                          |.+..  .-+++ ..+.+..+-+.    ++.++....+......+      .+++.-+-..+...+.+...++++.
T Consensus       131 ----g~l~~~~gg~~~-~~~~~~~ll~~----~g~~~~~~g~~g~~~~~------Kl~~N~~~~~~~~~~~Ea~~l~~~~  195 (287)
T 3pdu_A          131 ----GTLIILAAGDQS-LFTDAGPAFAA----LGKKCLHLGEVGQGARM------KLVVNMIMGQMMTALGEGMALGRNC  195 (287)
T ss_dssp             ----TCEEEEEEECHH-HHHHTHHHHHH----HEEEEEECSSTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----CCEEEEEeCCHH-HHHHHHHHHHH----hCCCEEEcCCCChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                11110  00221 11112221111    22211111112222222      2677777888888899999999998


Q ss_pred             CCCCCHHHHHhH
Q psy1913         507 DNKLDLRNAAYC  518 (535)
Q Consensus       507 ~~~~~lR~AAy~  518 (535)
                      +  +|..+..=+
T Consensus       196 G--~~~~~~~~~  205 (287)
T 3pdu_A          196 G--LDGGQLLEV  205 (287)
T ss_dssp             T--CCHHHHHHH
T ss_pred             C--CCHHHHHHH
Confidence            5  676654433

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.97  E-value=0.0013  Score=68.51  Aligned_cols=168  Identities=16%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             cccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHHHhcH----HHHHH--h
Q psy1913         199 DVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEILVNNE----EYMCE--I  272 (535)
Q Consensus       199 dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~----~~~~~--~  272 (535)
                      .|-....|++.=++++..+..   .|-       .||.-|-      ....+++-.++..+.++.++-    ..++.  |
T Consensus        87 ~I~~~~~G~d~id~~~~~~~~---~gI-------~V~n~pg------~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W  150 (364)
T 2j6i_A           87 LVVVAGVGSDHIDLDYINQTG---KKI-------SVLEVTG------SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDW  150 (364)
T ss_dssp             EEEESSSCCTTBCHHHHHHHT---CCC-------EEEECTT------SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred             EEEECCcccccccHHHHHhcC---CCE-------EEEECCC------cCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCC
Confidence            345556677766676654320   022       2444441      123566666666666555531    11110  0


Q ss_pred             ------CCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe-EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC
Q psy1913         273 ------GLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK-CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT  345 (535)
Q Consensus       273 ------g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a  345 (535)
                            ....++.|+||.|+|+|++|+.+|+.|...|++ |++        ||+..  ...+..    .+.|       .
T Consensus       151 ~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~--------~d~~~--~~~~~~----~~~g-------~  209 (364)
T 2j6i_A          151 EVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLY--------YDYQA--LPKDAE----EKVG-------A  209 (364)
T ss_dssp             CHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEE--------ECSSC--CCHHHH----HHTT-------E
T ss_pred             CcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE--------ECCCc--cchhHH----HhcC-------c
Confidence                  012368999999999999999999999999997 876        44443  333321    2222       2


Q ss_pred             cccCC--CCccccceEEeecccc-----cccccccccccc-ceEEEecCCCC-CCH-HHHHHHHhCCce
Q psy1913         346 KSAPT--DIMFDKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGP-LTP-AAHAMLLKKNVL  404 (535)
Q Consensus       346 ~~i~~--ell~~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p-~T~-eA~~iL~~rGI~  404 (535)
                      ...+.  +++ ..|||++.|...     +.|+.+....++ -.+|+..|.++ +.. +..+.|.+.+|.
T Consensus       210 ~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~  277 (364)
T 2j6i_A          210 RRVENIEELV-AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR  277 (364)
T ss_dssp             EECSSHHHHH-HTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             EecCCHHHHH-hcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc
Confidence            22222  444 389999999875     456555556665 36788888887 443 455678887765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.97  E-value=0.0012  Score=66.41  Aligned_cols=110  Identities=8%  Similarity=0.055  Sum_probs=74.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .+..++|.|+|+|++|..+|+.|.+.|.+|++             .|.+.+.+.+..+. |       ....+.  +++ 
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~-------------~dr~~~~~~~~~~~-g-------~~~~~~~~e~~-   63 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAI-------------WNRSPGKAAALVAA-G-------AHLCESVKAAL-   63 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHHHHHH-T-------CEECSSHHHHH-
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHC-C-------CeecCCHHHHH-
Confidence            35678999999999999999999999999887             45777777666554 2       222222  333 


Q ss_pred             ccceEEeecccccccccc-----ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceeecc
Q psy1913         355 DKVDILVPAAIEKVIRKS-----NADKV-QAKIIVEAANGPL--TPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~-----na~~i-~AkiIvEgAN~p~--T~eA~~iL~~rGI~viPD  408 (535)
                      .+|||+|-|........+     ....+ .-++|+.-.+...  +.+..+.+.++|+.|+.-
T Consensus        64 ~~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           64 SASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             HHSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             hcCCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            479999998765432221     12112 3467777776653  345567788999988753

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.95  E-value=0.00071  Score=68.21  Aligned_cols=187  Identities=8%  Similarity=-0.011  Sum_probs=100.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.++|+|++|..+|+.|.+.|++|++             .|.+.+.+.++.+.        +++..+. .=+..+|||
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~--------G~~~~~s~~e~~~~~dv   64 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVV-------------WNRTASKAEPLTKL--------GATVVENAIDAITPGGI   64 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------C-------CTTTTT--------TCEECSSGGGGCCTTCE
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHc--------CCeEeCCHHHHHhcCCc
Confidence            5899999999999999999999999987             44554444333221        3444433 223358999


Q ss_pred             Eeecccccccc-----cccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccccc
Q psy1913         360 LVPAAIEKVIR-----KSNADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSS  431 (535)
Q Consensus       360 LiPaA~~~~It-----~~na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~  431 (535)
                      ++-|-......     .+-+..++ -.+|++..+..  ++.+..+.+.++|+.|+=--  -+||....-..   .+. +-
T Consensus        65 vi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldap--VsGg~~~a~~g---~l~-im  138 (297)
T 4gbj_A           65 VFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAP--IFARPEAVRAK---VGN-IC  138 (297)
T ss_dssp             EEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECC--EECCHHHHHHT---CCE-EE
T ss_pred             eeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCC--cCCCccccccc---cce-ee
Confidence            99886643322     22222222 35777777654  45677788999999987322  23443221100   000 00


Q ss_pred             ccccccccch---hhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1913         432 LGRMSFGYDK---EISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDN  508 (535)
Q Consensus       432 ~grl~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~  508 (535)
                      .     .-++   ++.+.+++.+.+.+..+ |      .+.-...      -..+++.-+...+..++.+.+.++++.+ 
T Consensus       139 ~-----gG~~~~~~~~~~~l~~~g~~i~~~-g------~~~G~g~------~~Kl~~N~~~~~~~~~~aEa~~la~~~G-  199 (297)
T 4gbj_A          139 L-----SGNAGAKERIKPIVENFVKGVFDF-G------DDPGAAN------VIKLAGNFMIACSLEMMGEAFTMAEKNG-  199 (297)
T ss_dssp             E-----EECHHHHHHHHHHHHTTCSEEEEC-C------SCTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             c-----ccchhHHHHHHHHHHHhhCCeEEe-c------CCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            0     1112   12222222221111000 0      0111122      2336888888888888888888888885 


Q ss_pred             CCCHHH
Q psy1913         509 KLDLRN  514 (535)
Q Consensus       509 ~~~lR~  514 (535)
                       +|+.+
T Consensus       200 -ld~~~  204 (297)
T 4gbj_A          200 -ISRQS  204 (297)
T ss_dssp             -CCHHH
T ss_pred             -CCHHH
Confidence             67654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.94  E-value=0.0043  Score=67.07  Aligned_cols=197  Identities=12%  Similarity=0.093  Sum_probs=113.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc--cCC--CCccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS--APT--DIMFD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~--i~~--ell~~  355 (535)
                      .++|.|+|+|++|..+|+.|.+.|.+|++             .|.+.+.+.+..+...     .+...  .+.  ++...
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~g~-----~g~~i~~~~s~~e~v~~   65 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCA-------------FNRTVSKVDDFLANEA-----KGTKVVGAQSLKEMVSK   65 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSTHHHHHHHHTTT-----TTSSCEECSSHHHHHHT
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHhccc-----CCCceeccCCHHHHHhh
Confidence            46899999999999999999999999887             4456666666655421     01111  122  34332


Q ss_pred             --cceEEeeccccccccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhc
Q psy1913         356 --KVDILVPAAIEKVIRKSN----ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKN  426 (535)
Q Consensus       356 --~~DILiPaA~~~~It~~n----a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn  426 (535)
                        +||+++-|...+....+.    ++.+ .-.+|+...|..  .|.+..+.|.++|+.++.-  .-+||..-     ..+
T Consensus        66 l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~--pVsGg~~g-----A~~  138 (484)
T 4gwg_A           66 LKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS--GVSGGEEG-----ARY  138 (484)
T ss_dssp             BCSSCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHH-----HHH
T ss_pred             ccCCCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC--CccCCHHH-----Hhc
Confidence              699999887765333332    2333 247999999987  3455567789999988742  33444321     111


Q ss_pred             cccccccccccccchhhHHHHHHhhhhhhhhhhhh-h--hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         427 ISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK-K--IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYA  503 (535)
Q Consensus       427 ~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~-~--~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a  503 (535)
                      -..+-.|    . +++ ..+.+..+-+.+....+. .  ....-+.-....+      ..|+..++..+..++.+.+.++
T Consensus       139 G~~im~G----G-~~e-a~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~v------Kmv~N~i~~~~m~~iaEa~~l~  206 (484)
T 4gwg_A          139 GPSLMPG----G-NKE-AWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFV------KMVHNGIEYGDMQLICEAYHLM  206 (484)
T ss_dssp             CCEEEEE----E-CGG-GHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeecC----C-CHH-HHHHHHHHHHHhcCcccCCCceEEEECCccHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111    1 221 222222222222111000 0  0001112223333      3799999999999999999999


Q ss_pred             HH-cCCCCCHHHH
Q psy1913         504 EK-SDNKLDLRNA  515 (535)
Q Consensus       504 ~~-~~~~~~lR~A  515 (535)
                      ++ .+  +|..+-
T Consensus       207 ~~~~G--ld~~~l  217 (484)
T 4gwg_A          207 KDVLG--MAQDEM  217 (484)
T ss_dssp             HHTSC--CCHHHH
T ss_pred             HHhcC--CCHHHH
Confidence            98 74  676543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.92  E-value=0.0015  Score=66.15  Aligned_cols=108  Identities=11%  Similarity=0.057  Sum_probs=73.5

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ...++|.|.|+|++|..+|+.|.+.|..|++             .|.+.+.+.+..+.        +....+.  +++ .
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~-------------~dr~~~~~~~l~~~--------g~~~~~~~~e~~-~   86 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQV-------------WNRTPARAASLAAL--------GATIHEQARAAA-R   86 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHTT--------TCEEESSHHHHH-T
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEE-------------EcCCHHHHHHHHHC--------CCEeeCCHHHHH-h
Confidence            4568999999999999999999999999887             45677776665543        2233333  332 4


Q ss_pred             cceEEeecccccccccccc------ccc-cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         356 KVDILVPAAIEKVIRKSNA------DKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na------~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      +|||+|-|........+-.      +.+ .-++|+...+.+  ++.+..+.+.++|+.++.
T Consensus        87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~  147 (320)
T 4dll_A           87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD  147 (320)
T ss_dssp             TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            7999999987543222222      223 236777777765  345566778899998763

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.92  E-value=0.0096  Score=58.85  Aligned_cols=127  Identities=9%  Similarity=0.038  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      .+.|+..+++          ..|.  +++++++.|.|.|.+|+.+++.|.+.|++|+.             .+-+.+.+.
T Consensus       102 D~~G~~~~L~----------~~~~--~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v-------------~~R~~~~~~  156 (271)
T 1nyt_A          102 DGVGLLSDLE----------RLSF--IRPGLRILLIGAGGASRGVLLPLLSLDCAVTI-------------TNRTVSRAE  156 (271)
T ss_dssp             HHHHHHHHHH----------HHTC--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSHHHHH
T ss_pred             CHHHHHHHHH----------hcCc--CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEE-------------EECCHHHHH
Confidence            5888877776          2354  47899999999999999999999999998876             336666666


Q ss_pred             HHHHHcCCcccCCCCcccCCCCcc-ccceEEeeccccccccc---cccccc-cceEEEecCCCC-CCHHHHHHHHhCCce
Q psy1913         331 TYKITKGTIKGYPGTKSAPTDIMF-DKVDILVPAAIEKVIRK---SNADKV-QAKIIVEAANGP-LTPAAHAMLLKKNVL  404 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~ell~-~~~DILiPaA~~~~It~---~na~~i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~  404 (535)
                      +..++.+..   ......+.+-+. ..+||+|-|+.-..-..   -....+ ...+|++-.-+| .|+.. +..+++|+.
T Consensus       157 ~la~~~~~~---~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t~~~-~~a~~~G~~  232 (271)
T 1nyt_A          157 ELAKLFAHT---GSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFL-AWCEQRGSK  232 (271)
T ss_dssp             HHHHHTGGG---SSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHH-HHHHHTTCC
T ss_pred             HHHHHhhcc---CCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCCHHH-HHHHHcCCC
Confidence            666553321   001111111112 47999999987443210   011112 236888888888 46654 557889986


Q ss_pred             -ee
Q psy1913         405 -II  406 (535)
Q Consensus       405 -vi  406 (535)
                       ++
T Consensus       233 ~~~  235 (271)
T 1nyt_A          233 RNA  235 (271)
T ss_dssp             EEE
T ss_pred             eec
Confidence             54

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.90  E-value=0.0051  Score=64.78  Aligned_cols=108  Identities=15%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCC--CCHHHHHHHH-HHcCCcccCCCCc
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTE--INYKDLHTYK-ITKGTIKGYPGTK  346 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~d--LDi~~L~~~~-~~~g~v~~~~~a~  346 (535)
                      +..|.  +++..+|+|.|.|.+|..+|++|...|++=|-+.|++|.|+.... |  |+.  +.+.. ++...   +   .
T Consensus       184 ~i~g~--~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~-~~~L~~--~k~~~A~~~~~---~---~  252 (388)
T 1vl6_A          184 KLTEK--KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP-ETCLNE--YHLEIARITNP---E---R  252 (388)
T ss_dssp             HHHTC--CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSG-GGCSSH--HHHHHHHTSCT---T---C
T ss_pred             HHhCC--CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCc-ccccCH--HHHHHHHhhhc---c---C
Confidence            34564  589999999999999999999999999977779999999997663 3  443  22222 22211   1   0


Q ss_pred             ccCC--CCccccceEEeeccccccccccccccccc-eEEEecCCCCC
Q psy1913         347 SAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANGPL  390 (535)
Q Consensus       347 ~i~~--ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~p~  390 (535)
                      ....  +.+ ..+||||=++.++++|++-+.+++- .+|.+-|| |+
T Consensus       253 ~~~~L~eav-~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSN-Pt  297 (388)
T 1vl6_A          253 LSGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALAN-PV  297 (388)
T ss_dssp             CCSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS-SS
T ss_pred             chhhHHHHH-ccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCC-CC
Confidence            1111  223 3589999999999999999998853 49999999 53

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.88  E-value=0.0017  Score=65.60  Aligned_cols=105  Identities=11%  Similarity=0.178  Sum_probs=75.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.++|+|++|...|+.|.+.|+.|++             .|.+.+.+..+.+.        +++..+. .=+...|||
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v-------------~dr~~~~~~~l~~~--------Ga~~a~s~~e~~~~~dv   62 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNV-------------FDLVQSAVDGLVAA--------GASAARSARDAVQGADV   62 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHHT--------TCEECSSHHHHHTTCSE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEE-------------EcCCHHHHHHHHHc--------CCEEcCCHHHHHhcCCc
Confidence            4899999999999999999999999987             55777887777654        3443333 223358999


Q ss_pred             Eeeccc-----cccccccc--ccccc-ceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913         360 LVPAAI-----EKVIRKSN--ADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       360 LiPaA~-----~~~It~~n--a~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~vi  406 (535)
                      ++-|-.     +.++...+  +..++ -++|++..+..  .+.+..+.|.++|+.|+
T Consensus        63 v~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l  119 (300)
T 3obb_A           63 VISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  119 (300)
T ss_dssp             EEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             eeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            998864     33333322  23333 37888888775  56777888999999987

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.84  E-value=0.0048  Score=64.67  Aligned_cols=108  Identities=20%  Similarity=0.317  Sum_probs=69.6

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc--CC--CC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA--PT--DI  352 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i--~~--el  352 (535)
                      +.|++|.|.|+|.+|..+++.|...|+ +|++             .+-+.+.+.+..++.|.       ..+  +.  ++
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v-------------~~r~~~ra~~la~~~g~-------~~~~~~~l~~~  224 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLV-------------ANRTYERAVELARDLGG-------EAVRFDELVDH  224 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEE-------------ECSSHHHHHHHHHHHTC-------EECCGGGHHHH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEE-------------EeCCHHHHHHHHHHcCC-------ceecHHhHHHH
Confidence            679999999999999999999999999 7776             33455555555554431       111  11  22


Q ss_pred             ccccceEEeecccc--cccccccccc-c------cceEEEecCCCC-CCHHHHHHHHhCCcee--eccc
Q psy1913         353 MFDKVDILVPAAIE--KVIRKSNADK-V------QAKIIVEAANGP-LTPAAHAMLLKKNVLI--IPDI  409 (535)
Q Consensus       353 l~~~~DILiPaA~~--~~It~~na~~-i------~AkiIvEgAN~p-~T~eA~~iL~~rGI~v--iPD~  409 (535)
                      + ..+||+|-|+..  ..++.+.... +      .-.++++.+..+ ++|+.   +.-.||.+  +||+
T Consensus       225 l-~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i~~~l---~~l~~v~l~d~d~l  289 (404)
T 1gpj_A          225 L-ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEGV---ENIEDVEVRTIDDL  289 (404)
T ss_dssp             H-HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTG---GGSTTEEEEEHHHH
T ss_pred             h-cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCCCccc---cccCCeEEEeHhhH
Confidence            3 479999999763  2334344444 2      235788888732 45543   33467776  6765

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.81  E-value=0.0026  Score=66.05  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|+||.|.|+|++|+.+|+.|...|++|++        ||     -+...  +...+.       +.+.++.  +++ 
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d-----~~~~~--~~~~~~-------g~~~~~~l~ell-  213 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV--------WG-----RENSK--ERARAD-------GFAVAESKDALF-  213 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------EC-----SHHHH--HHHHHT-------TCEECSSHHHHH-
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE--------EC-----CCCCH--HHHHhc-------CceEeCCHHHHH-
Confidence            58899999999999999999999999999998        22     22111  111222       2333433  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC--CHHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL--TPAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++..+.+++  +....+.|.+..|.
T Consensus       214 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  271 (352)
T 3gg9_A          214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG  271 (352)
T ss_dssp             HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS
T ss_pred             hhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc
Confidence            47999998875     3455555556665 468899999984  44556778888774

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.76  E-value=0.0013  Score=66.68  Aligned_cols=105  Identities=17%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|+|+|++|+.+|+.|...|++|++        ||+..   +.+    ...+.|       .+..+. +++ .
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~d~~~---~~~----~~~~~g-------~~~~~l~ell-~  195 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILL--------YDPYP---NEE----RAKEVN-------GKFVDLETLL-K  195 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC---CHH----HHHHTT-------CEECCHHHHH-H
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCCEEEE--------ECCCC---Chh----hHhhcC-------ccccCHHHHH-h
Confidence            68999999999999999999999999999987        44433   221    112222       222222 444 3


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      .|||++.|...     +.|+.+....++ -.+++.-+-+++ .. +..+.|.+..|.
T Consensus       196 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~  252 (307)
T 1wwk_A          196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA  252 (307)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             hCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence            89999999763     345544555554 357777777774 43 345677776653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.75  E-value=0.011  Score=63.58  Aligned_cols=198  Identities=13%  Similarity=0.070  Sum_probs=108.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc--c
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD--K  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~--~  356 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.             .|.+.+.+.+..++.|....-.+....+.  ++...  +
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v-------------~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~   68 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAV-------------FNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKK   68 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccC
Confidence            4799999999999999999999998876             33556677666655442100000111122  33332  5


Q ss_pred             ceEEeecccccccccccccc----cc-ceEEEecCCCCC--CHHHHHHHHhCCceeeccccccccCcchhhHhhhhcccc
Q psy1913         357 VDILVPAAIEKVIRKSNADK----VQ-AKIIVEAANGPL--TPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISH  429 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~  429 (535)
                      ||+++-|.....-..+-+..    ++ -++|+...|+..  +.+..+.|.++|+.++.  ...+||..     ..+.-..
T Consensus        69 aDvVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~--~pv~gg~~-----~a~~g~~  141 (478)
T 1pgj_A           69 PRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG--MGISGGEE-----GARKGPA  141 (478)
T ss_dssp             SCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE--EEEESHHH-----HHHHCCE
T ss_pred             CCEEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEE--eeccCCHH-----HHhcCCe
Confidence            99999998765322333332    32 368999999872  44555678888988763  23344432     1111111


Q ss_pred             ccccccccccchhhHHHHHHhhhhhhhhhhhhh-------hhhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy1913         430 SSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK-------IRIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEY  502 (535)
Q Consensus       430 ~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~  502 (535)
                      +..|    . +++ ..+.+..+-+.+    +.+       .....+......      ...++..+...+...+.+...+
T Consensus       142 i~~g----g-~~~-~~~~v~~ll~~~----g~~~~dg~~~v~~~g~~G~g~~------~Kl~~N~~~~~~~~~i~Ea~~l  205 (478)
T 1pgj_A          142 FFPG----G-TLS-VWEEIRPIVEAA----AAKADDGRPCVTMNGSGGAGSC------VKMYHNSGEYAILQIWGEVFDI  205 (478)
T ss_dssp             EEEE----E-CHH-HHHHHHHHHHHH----SCBCTTSCBSCCCCCSTTHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Eecc----C-CHH-HHHHHHHHHHHh----cccccCCCeeEEEeCCchHHHH------HhhHHHHHHHHHHHHHHHHHHH
Confidence            1111    1 221 122222221111    111       001111111111      2356778888889999999999


Q ss_pred             HHHcCCCCCHHHHH
Q psy1913         503 AEKSDNKLDLRNAA  516 (535)
Q Consensus       503 a~~~~~~~~lR~AA  516 (535)
                      +++.+  ++..+..
T Consensus       206 ~~~~G--~~~~~~~  217 (478)
T 1pgj_A          206 LRAMG--LNNDEVA  217 (478)
T ss_dssp             HHHTT--CCHHHHH
T ss_pred             HHHcC--CCHHHHH
Confidence            99875  6765543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.74  E-value=0.0013  Score=68.16  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+||.|+|+|++|+.+|+.|...|++|++        ||+.-  -.  ..   ....|       .+....  +++ 
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~--------~d~~~--~~--~~---~~~~g-------~~~~~~l~ell-  221 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLF--------YDPYL--SD--GV---ERALG-------LQRVSTLQDLL-  221 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECTTS--CT--TH---HHHHT-------CEECSSHHHHH-
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEE--------ECCCc--ch--hh---HhhcC-------CeecCCHHHHH-
Confidence            58999999999999999999999999999887        34332  11  11   11122       222222  444 


Q ss_pred             ccceEEeeccc-----cccccccccccccc-eEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQA-KIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~A-kiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      ..|||++.|..     .+.|+.+....++. .+++.-+.+++ .. +..+.|.+++|.
T Consensus       222 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~  279 (347)
T 1mx3_A          222 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  279 (347)
T ss_dssp             HHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             hcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc
Confidence            37999998865     34566666666653 68888898884 43 456778888876

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.68  E-value=0.0014  Score=57.60  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc----
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM----  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell----  353 (535)
                      +.++|+|.|+|.+|+.+|+.|.+.|.+|++             .|.|.+.+.+..+..-.+..  + . .+. +.+    
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~-------------id~~~~~~~~~~~~~~~~~~--g-d-~~~~~~l~~~~   67 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLA-------------VDKSKEKIELLEDEGFDAVI--A-D-PTDESFYRSLD   67 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEE-------------EESCHHHHHHHHHTTCEEEE--C-C-TTCHHHHHHSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHHCCCcEEE--C-C-CCCHHHHHhCC
Confidence            456899999999999999999999999998             44677777666543211100  0 0 111 222    


Q ss_pred             cccceEEeecccccccc---ccccccc-cceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         354 FDKVDILVPAAIEKVIR---KSNADKV-QAKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It---~~na~~i-~AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      -.+||++|-|......+   ...+.++ ..++|+-..    +++..+.|.+.|+.
T Consensus        68 ~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~----~~~~~~~l~~~G~~  118 (141)
T 3llv_A           68 LEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVS----SPKKKEEFEEAGAN  118 (141)
T ss_dssp             CTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEES----CGGGHHHHHHTTCS
T ss_pred             cccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEc----ChhHHHHHHHcCCC
Confidence            24789999887643222   2333333 235555443    23445678888873

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.67  E-value=0.0042  Score=64.11  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=70.0

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      .++.|++|.|+|+|++|+.+|+.|. ..|.+|++        ||++.  -..+...    +.|       ....+.  ++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~--------~d~~~--~~~~~~~----~~g-------~~~~~~l~el  217 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY--------YDVAP--ADAETEK----ALG-------AERVDSLEEL  217 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEE--------ECSSC--CCHHHHH----HHT-------CEECSSHHHH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEE--------ECCCC--cchhhHh----hcC-------cEEeCCHHHH
Confidence            3689999999999999999999999 99999886        44443  2222221    111       222222  33


Q ss_pred             ccccceEEeeccccc-----ccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         353 MFDKVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       353 l~~~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      + .+|||++.|...+     .|+.+....++ -.+|+.-+.+++ + .+..+.|.+..|.
T Consensus       218 l-~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~  276 (348)
T 2w2k_A          218 A-RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLL  276 (348)
T ss_dssp             H-HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             h-ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCce
Confidence            3 4899999997654     44444445554 357788888873 4 3455667775554

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.65  E-value=0.0039  Score=64.01  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=69.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++.        |+..  -..             ..+........  +++ 
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~--------dr~~--~~~-------------~~~~~~~~~~~l~ell-  192 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGV--------SRSG--RER-------------AGFDQVYQLPALNKML-  192 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE--------CSSC--CCC-------------TTCSEEECGGGHHHHH-
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCCEEEEE--------cCCh--HHh-------------hhhhcccccCCHHHHH-
Confidence            588999999999999999999999999999873        3332  000             00000111111  333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCc
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNV  403 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI  403 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++.-+-+++ . ....+.|.+..|
T Consensus       193 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  249 (324)
T 3hg7_A          193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKL  249 (324)
T ss_dssp             HTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSS
T ss_pred             hhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCc
Confidence            47999998866     4456666666665 468999999984 3 344567877766

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.64  E-value=0.0025  Score=54.86  Aligned_cols=106  Identities=13%  Similarity=0.164  Sum_probs=60.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----c
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----F  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~  354 (535)
                      .+++|+|.|+|.+|+.+++.|.+.|.+|+.+             |.+.+.+....+..+. .-+.+ ...+.+.+    -
T Consensus         3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~-------------d~~~~~~~~~~~~~~~-~~~~~-d~~~~~~l~~~~~   67 (140)
T 1lss_A            3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIVLI-------------DIDKDICKKASAEIDA-LVING-DCTKIKTLEDAGI   67 (140)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHCSS-EEEES-CTTSHHHHHHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEE-------------ECCHHHHHHHHHhcCc-EEEEc-CCCCHHHHHHcCc
Confidence            3579999999999999999999999998873             2455666555544331 00000 00011111    2


Q ss_pred             ccceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNV  403 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI  403 (535)
                      .++|++|-|+.....+.   ..+..+. .++|+- +|++.   ..+.|++.|+
T Consensus        68 ~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~---~~~~l~~~g~  116 (140)
T 1lss_A           68 EDADMYIAVTGKEEVNLMSSLLAKSYGINKTIAR-ISEIE---YKDVFERLGV  116 (140)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEE-CSSTT---HHHHHHHTTC
T ss_pred             ccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEE-ecCHh---HHHHHHHcCC
Confidence            37899999976443222   1222232 255553 45443   3446777775

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.62  E-value=0.0019  Score=65.69  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=69.7

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      .++.|++|.|.|+|++|+.+|+.|...|++|++        ||+..   +..   . ..+.|       ....+. +++ 
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~--------~d~~~---~~~---~-~~~~g-------~~~~~l~ell-  194 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA--------YDILD---IRE---K-AEKIN-------AKAVSLEELL-  194 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEE--------ECSSC---CHH---H-HHHTT-------CEECCHHHHH-
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE--------ECCCc---chh---H-HHhcC-------ceecCHHHHH-
Confidence            368999999999999999999999999999987        34433   111   1 12222       222222 444 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCC-CCH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGP-LTP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p-~T~-eA~~iL~~rGI~  404 (535)
                      ..|||++.|...     +.|+.+....++ -.+++.-+-++ +.. ...+.|.+.+|.
T Consensus       195 ~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  252 (313)
T 2ekl_A          195 KNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVY  252 (313)
T ss_dssp             HHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEE
T ss_pred             hhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCc
Confidence            389999998753     345444445554 36788877787 443 345677777663

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.60  E-value=0.0037  Score=64.37  Aligned_cols=105  Identities=15%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++        ||+..   +..    ...+.|       .+..+. +++ .
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~---~~~----~~~~~g-------~~~~~l~ell-~  218 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGMKTIG--------YDPII---SPE----VSASFG-------VQQLPLEEIW-P  218 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECSSS---CHH----HHHHTT-------CEECCHHHHG-G
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCCEEEE--------ECCCc---chh----hhhhcC-------ceeCCHHHHH-h
Confidence            58999999999999999999999999999987        44443   211    112222       222222 444 4


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      .|||++-|...     +.|+.+....++ -.+++.-+-+++ .. +..+.|.+..|.
T Consensus       219 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~  275 (335)
T 2g76_A          219 LCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA  275 (335)
T ss_dssp             GCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence            89999998654     345555556665 368888888884 33 345678777653

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.59  E-value=0.006  Score=64.26  Aligned_cols=106  Identities=15%  Similarity=0.106  Sum_probs=71.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|++|.|.|+|++|+.+|+.|...|++|++        ||+..  ...+.    ..+.|       ......  +++ 
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~--------~d~~~--~~~~~----~~~~G-------~~~~~~l~ell-  245 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY--------TDRHR--LPESV----EKELN-------LTWHATREDMY-  245 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE--------ECSSC--CCHHH----HHHHT-------CEECSSHHHHG-
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE--------EcCCc--cchhh----HhhcC-------ceecCCHHHHH-
Confidence            58999999999999999999999999999987        44443  22221    11222       222222  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++.-+-+++ .. +..+.|.+..|.
T Consensus       246 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  303 (393)
T 2nac_A          246 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA  303 (393)
T ss_dssp             GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred             hcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence            48999999876     3456655556665 368888888884 43 455677776553

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.57  E-value=0.0046  Score=67.03  Aligned_cols=109  Identities=21%  Similarity=0.203  Sum_probs=73.4

Q ss_pred             HHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc
Q psy1913         268 YMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS  347 (535)
Q Consensus       268 ~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~  347 (535)
                      |.+..|.  .+.|++|.|.|+|.||+.+|+.|...|++|++             .|.+.....+... .       +...
T Consensus       267 w~~~~g~--~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v-------------~d~~~~~~~~a~~-~-------G~~~  323 (494)
T 3d64_A          267 IKRATDV--MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWV-------------TEIDPICALQAAM-E-------GYRV  323 (494)
T ss_dssp             HHHHHCC--CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE-------------ECSCHHHHHHHHT-T-------TCEE
T ss_pred             hhhcccc--ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEE-------------EeCChHhHHHHHH-c-------CCEe
Confidence            3344553  48999999999999999999999999999998             4466554333221 1       2222


Q ss_pred             cCC-CCccccceEEeeccc-ccccccccccccc-ceEEEecCCCCC--CHHHHHHHHh
Q psy1913         348 APT-DIMFDKVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGPL--TPAAHAMLLK  400 (535)
Q Consensus       348 i~~-ell~~~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p~--T~eA~~iL~~  400 (535)
                      .+- +++ ..|||++-|.- .+.|+.+....++ --+|+.-+-+++  ..++-+.|.+
T Consensus       324 ~~l~ell-~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL~AL~~  380 (494)
T 3d64_A          324 VTMEYAA-DKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQW  380 (494)
T ss_dssp             CCHHHHT-TTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGGTTSEE
T ss_pred             CCHHHHH-hcCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHHHhhhc
Confidence            222 444 47999999953 6678877777776 368888888875  4333344433

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.56  E-value=0.01  Score=64.19  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=66.1

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..+.  .+.|++|+|.|+|.+|..+|+.|...|++|+.             +|.|...+.+.....        ....+
T Consensus       257 r~tg~--~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv-------------~D~~~~~a~~Aa~~g--------~dv~~  313 (488)
T 3ond_A          257 RATDV--MIAGKVAVVAGYGDVGKGCAAALKQAGARVIV-------------TEIDPICALQATMEG--------LQVLT  313 (488)
T ss_dssp             HHHCC--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHTT--------CEECC
T ss_pred             HHcCC--cccCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EcCCHHHHHHHHHhC--------CccCC
Confidence            34554  47999999999999999999999999999988             567777766655431        12112


Q ss_pred             C-CCccccceEEeeccc-cccccccccccccc-eEEEecCCC
Q psy1913         350 T-DIMFDKVDILVPAAI-EKVIRKSNADKVQA-KIIVEAANG  388 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~-~~~It~~na~~i~A-kiIvEgAN~  388 (535)
                      . +++ ..+|+++-|.. .++|+.+....++- -+|+-.+..
T Consensus       314 lee~~-~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          314 LEDVV-SEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             GGGTT-TTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             HHHHH-HhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            2 333 47899998765 56676666666642 455566654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.53  E-value=0.0071  Score=65.31  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=69.8

Q ss_pred             HHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc
Q psy1913         268 YMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS  347 (535)
Q Consensus       268 ~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~  347 (535)
                      |.+..|.  .+.|++|.|.|+|.+|+.+|+.|...|++|++             .|.+.....+....        +...
T Consensus       247 w~r~~~~--~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv-------------~d~~~~~~~~a~~~--------g~~~  303 (479)
T 1v8b_A          247 LMRATDF--LISGKIVVICGYGDVGKGCASSMKGLGARVYI-------------TEIDPICAIQAVME--------GFNV  303 (479)
T ss_dssp             HHHHHCC--CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEE-------------ECSCHHHHHHHHTT--------TCEE
T ss_pred             hhhcccc--ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEE-------------EeCChhhHHHHHHc--------CCEe
Confidence            3344453  58999999999999999999999999999998             55666554333321        1222


Q ss_pred             cCC-CCccccceEEeecc-cccccccccccccc-ceEEEecCCCCC
Q psy1913         348 APT-DIMFDKVDILVPAA-IEKVIRKSNADKVQ-AKIIVEAANGPL  390 (535)
Q Consensus       348 i~~-ell~~~~DILiPaA-~~~~It~~na~~i~-AkiIvEgAN~p~  390 (535)
                      .+- +++ ..|||++-|+ ..+.|+.+....++ -.+|+.-+-+++
T Consensus       304 ~~l~ell-~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          304 VTLDEIV-DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             CCHHHHT-TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             cCHHHHH-hcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence            222 444 4799999994 36778777777776 358888888776

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.53  E-value=0.0051  Score=63.70  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++        ||+..  .+.+..     .        +.+..+.  +++ 
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~dr~~--~~~~~~-----~--------g~~~~~~l~ell-  225 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGLAIHY--------HNRTR--LSHALE-----E--------GAIYHDTLDSLL-  225 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE--------ECSSC--CCHHHH-----T--------TCEECSSHHHHH-
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE--------ECCCC--cchhhh-----c--------CCeEeCCHHHHH-
Confidence            58899999999999999999999999999987        56655  443211     1        2233333  444 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      ..|||++-|..-     +.|+.+....++ -.+++..|-+++ .. ...+.|.+..|.
T Consensus       226 ~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  283 (345)
T 4g2n_A          226 GASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLF  283 (345)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCce
Confidence            479999988763     456666556664 478999999994 33 334567776664

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.51  E-value=0.0033  Score=64.48  Aligned_cols=104  Identities=13%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc-CC-CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-PT-DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i-~~-ell~  354 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++.        |+..  -..+             .+...... +. +++ 
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~--------dr~~--~~~~-------------~~~~~~~~~~l~ell-  189 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGMHVIGV--------NTTG--HPAD-------------HFHETVAFTATADAL-  189 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE--------ESSC--CCCT-------------TCSEEEEGGGCHHHH-
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCCEEEEE--------CCCc--chhH-------------hHhhccccCCHHHHH-
Confidence            588999999999999999999999999999883        3332  0000             00000011 12 333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++.-+-+++ .. ...+.|.+..|.
T Consensus       190 ~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  247 (324)
T 3evt_A          190 ATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS  247 (324)
T ss_dssp             HHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCS
T ss_pred             hhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCce
Confidence            47999998865     4556666666665 368999999984 43 344678777664

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.49  E-value=0.031  Score=54.47  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|+|++|..+|+.|.+ |.+|+.             .|.+.+.+.+..+..-..        .+. +.+ .+||+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~-------------~~~~~~~~~~~~~~g~~~--------~~~~~~~-~~~D~   58 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLV-------------WNRTFEKALRHQEEFGSE--------AVPLERV-AEARV   58 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEE-------------ECSSTHHHHHHHHHHCCE--------ECCGGGG-GGCSE
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEE-------------EeCCHHHHHHHHHCCCcc--------cCHHHHH-hCCCE
Confidence            379999999999999999999 998765             224445555544431111        112 433 38999


Q ss_pred             Eeeccccccccccc----ccccc-ceEEEecCCCC-C-CHHHHHHHHhCCceeeccccccccCc
Q psy1913         360 LVPAAIEKVIRKSN----ADKVQ-AKIIVEAANGP-L-TPAAHAMLLKKNVLIIPDIFANAGGV  416 (535)
Q Consensus       360 LiPaA~~~~It~~n----a~~i~-AkiIvEgAN~p-~-T~eA~~iL~~rGI~viPD~laNaGGV  416 (535)
                      ++-|.....-..+-    .+.++ -++|+.-.|.. . +.+..+.+.++|+.+++-  -+.||.
T Consensus        59 vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~--p~~~~~  120 (289)
T 2cvz_A           59 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA--PVSGGT  120 (289)
T ss_dssp             EEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC--CEESHH
T ss_pred             EEEeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe--cCCCCh
Confidence            99998755422221    22333 36777777764 2 234556777889877643  344544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.49  E-value=0.0037  Score=57.33  Aligned_cols=111  Identities=15%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC-
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI-  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el-  352 (535)
                      ++.+.+|+|.|+|.+|..+|+.|.+. |..|++             .|.|.+.+..+.+..-.+. +......+.  ++ 
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~v-------------id~~~~~~~~~~~~g~~~~-~gd~~~~~~l~~~~  101 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLG-------------IEIREEAAQQHRSEGRNVI-SGDATDPDFWERIL  101 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEE-------------EESCHHHHHHHHHTTCCEE-ECCTTCHHHHHTBC
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEE-------------EECCHHHHHHHHHCCCCEE-EcCCCCHHHHHhcc
Confidence            46688999999999999999999999 999998             3466777666553211111 000000000  11 


Q ss_pred             ccccceEEeecccccccccc---ccccc--cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913         353 MFDKVDILVPAAIEKVIRKS---NADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~---na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~v  405 (535)
                      --.++|++|-|......+..   .+..+  ..++|+-. |   +++..+.|.+.|+.+
T Consensus       102 ~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~---~~~~~~~l~~~G~~~  155 (183)
T 3c85_A          102 DTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA-E---YPDQLEGLLESGVDA  155 (183)
T ss_dssp             SCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE-S---SHHHHHHHHHHTCSE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHcCCCE
Confidence            12378999988764332222   22222  23666643 3   355556778888743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.47  E-value=0.0045  Score=54.75  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc----cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM----FD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell----~~  355 (535)
                      .+|+|.|+|.+|+.+|+.|.+.|..|++             -|.|.+.+.++.+. |.-.-+..+   +. +.|    -.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~v-------------id~~~~~~~~~~~~-g~~~i~gd~---~~~~~l~~a~i~   70 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVV-------------IETSRTRVDELRER-GVRAVLGNA---ANEEIMQLAHLE   70 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEE-------------EESCHHHHHHHHHT-TCEEEESCT---TSHHHHHHTTGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE-------------EECCHHHHHHHHHc-CCCEEECCC---CCHHHHHhcCcc
Confidence            4899999999999999999999999998             44777777666542 210000011   11 233    24


Q ss_pred             cceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         356 KVDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      ++|++|-|......+.   ..+.++  ..++|+-..    +++..+.|++-|+-
T Consensus        71 ~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d  120 (140)
T 3fwz_A           71 CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAH----YDDEVAYITERGAN  120 (140)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCC
Confidence            7899998877554333   233333  357777553    35666788999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.45  E-value=0.0077  Score=61.41  Aligned_cols=96  Identities=18%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|.+|+...++          +.+.  ++.|++|+|.|.|+ ||..+|++|...|+.|.. ++++        + -|
T Consensus       144 ~~PcTp~gi~~ll~----------~~~i--~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv-~hs~--------t-~~  201 (301)
T 1a4i_A          144 FIPCTPKGCLELIK----------ETGV--PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTT-CHSK--------T-AH  201 (301)
T ss_dssp             CCCHHHHHHHHHHH----------TTTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE-ECTT--------C-SS
T ss_pred             ccCchHHHHHHHHH----------HcCC--CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEE-EECC--------c-cc
Confidence            35789999766655          3454  58999999999996 899999999999999664 4322        0 11


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCCC
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGPL  390 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p~  390 (535)
                      +.   +                     ....+||+|-|.. .+.|+.+-+.  .--+|+.-+-+++
T Consensus       202 L~---~---------------------~~~~ADIVI~Avg~p~~I~~~~vk--~GavVIDVgi~~~  241 (301)
T 1a4i_A          202 LD---E---------------------EVNKGDILVVATGQPEMVKGEWIK--PGAIVIDCGINYV  241 (301)
T ss_dssp             HH---H---------------------HHTTCSEEEECCCCTTCBCGGGSC--TTCEEEECCCBC-
T ss_pred             HH---H---------------------HhccCCEEEECCCCcccCCHHHcC--CCcEEEEccCCCc
Confidence            11   1                     1247899999988 5678776653  2357777776664

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.43  E-value=0.046  Score=55.23  Aligned_cols=188  Identities=10%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCC-HHHHHHHHHHcCCcccCCCCccc-CC-CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEIN-YKDLHTYKITKGTIKGYPGTKSA-PT-DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLD-i~~L~~~~~~~g~v~~~~~a~~i-~~-ell~~~  356 (535)
                      ++|+|.|+|++|..+|+.|.+.| .+|++ .|.+     ++-  .+ .+++.+...+.|       . .- +. +++ .+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~-~dr~-----~~~--~~~~~~~~~~~~~~g-------~-~~~s~~e~~-~~   87 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAA-YDLR-----FND--PAASGALRARAAELG-------V-EPLDDVAGI-AC   87 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEE-ECGG-----GGC--TTTHHHHHHHHHHTT-------C-EEESSGGGG-GG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEE-EeCC-----Ccc--ccchHHHHHHHHHCC-------C-CCCCHHHHH-hc
Confidence            68999999999999999999999 88876 2221     000  00 113333333333       1 12 23 433 47


Q ss_pred             ceEEeecccccccccc---cccccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccCcchhhHhhhhccccc
Q psy1913         357 VDILVPAAIEKVIRKS---NADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHS  430 (535)
Q Consensus       357 ~DILiPaA~~~~It~~---na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~  430 (535)
                      |||+|-|.........   -.+.++ -++|+...+.+  ++.+..+.|.++|+.++...+  +|+.-.   + ...+. +
T Consensus        88 aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv--~g~~~a---~-~g~l~-i  160 (317)
T 4ezb_A           88 ADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAV--MARVPP---Y-AEKVP-I  160 (317)
T ss_dssp             CSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEE--CSCSTT---T-GGGSE-E
T ss_pred             CCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccC--CCCchh---h-cCCEE-E
Confidence            9999999876544321   122232 35777766654  345566788999998874333  233211   1 01111 1


Q ss_pred             cccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcch-hhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy1913         431 SLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKS-AMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNK  509 (535)
Q Consensus       431 ~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~  509 (535)
                          |...-+++..+.+++.+        |..+....+ ......++      +++.-+...+...+.+...++++.+  
T Consensus       161 ----~vgg~~~~~~~~ll~~~--------g~~v~~~g~~~g~a~~~K------l~~N~~~~~~~~~~~E~~~la~~~G--  220 (317)
T 4ezb_A          161 ----LVAGRRAVEVAERLNAL--------GMNLEAVGETPGQASSLK------MIRSVMIKGVEALLIEALSSAERAG--  220 (317)
T ss_dssp             ----EEESTTHHHHHHHHHTT--------TCEEEEEESSTTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred             ----EEeCChHHHHHHHHHHh--------CCCeEEeCCCcCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence                01111112223333222        222111121 23333333      7788888889999999999999986  


Q ss_pred             CCH
Q psy1913         510 LDL  512 (535)
Q Consensus       510 ~~l  512 (535)
                      +|.
T Consensus       221 id~  223 (317)
T 4ezb_A          221 VTE  223 (317)
T ss_dssp             CHH
T ss_pred             CCH
Confidence            565

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.42  E-value=0.0038  Score=63.13  Aligned_cols=101  Identities=15%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .+.|+||.|.|+|++|+.+|+.|...|++|++        ||+.....+                  ..+..+.  +++ 
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~--------~dr~~~~~~------------------~~~~~~~l~ell-  171 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIA--------YTRSSVDQN------------------VDVISESPADLF-  171 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEE--------ECSSCCCTT------------------CSEECSSHHHHH-
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEE--------Eeccccccc------------------cccccCChHHHh-
Confidence            47899999999999999999999999999998        344330010                  0112222  333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+|+.-+-+++ . .+..+.|.+.+|.
T Consensus       172 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  229 (290)
T 3gvx_A          172 RQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDV  229 (290)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             hccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccce
Confidence            47999998876     3455566666665 368889998883 3 4445678887764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.41  E-value=0.011  Score=62.19  Aligned_cols=159  Identities=17%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA  348 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i  348 (535)
                      .+..|.  ++.|+||.|.|+|++|+.+|+.|...|++|++               .|...     ...+     .+....
T Consensus       110 ~r~~g~--~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~---------------~d~~~-----~~~~-----~~~~~~  162 (381)
T 3oet_A          110 AERDGF--SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL---------------CDPPR-----AARG-----DEGDFR  162 (381)
T ss_dssp             HHHTTC--CGGGCEEEEECCSHHHHHHHHHHHHTTCEEEE---------------ECHHH-----HHTT-----CCSCBC
T ss_pred             HHhcCC--ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEE---------------ECCCh-----HHhc-----cCcccC
Confidence            445664  58999999999999999999999999999998               33321     1111     011111


Q ss_pred             CC-CCccccceEEeeccc---------ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce-eecccccccc
Q psy1913         349 PT-DIMFDKVDILVPAAI---------EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL-IIPDIFANAG  414 (535)
Q Consensus       349 ~~-ell~~~~DILiPaA~---------~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~-viPD~laNaG  414 (535)
                      +. +++ ..|||++-|..         .+.|+.+....++ -.+++..+-|++ .. ...+.|++.+|. ..=|++.+=-
T Consensus       163 sl~ell-~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP  241 (381)
T 3oet_A          163 TLDELV-QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP  241 (381)
T ss_dssp             CHHHHH-HHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred             CHHHHH-hhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence            21 343 47999988874         3456555555564 478999999984 33 344678887765 3445544332


Q ss_pred             CcchhhHhhh-hccccccccccccccchhhHHHHHHhhhhhhhhhhhh
Q psy1913         415 GVTVSYFEWL-KNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK  461 (535)
Q Consensus       415 GVivSy~Ew~-qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~  461 (535)
                      -.-.+-++.. ---.|+.|      ++.+........+.+.+.+.++.
T Consensus       242 ~~~~~L~~~~~i~TPHiag------~t~e~~~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          242 DLNVALLEAVDIGTSHIAG------YTLEGKARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             SCCHHHHHHSSEECSSCTT------CCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcchhhhCCEEECCccCc------CcHHHHHHHHHHHHHHHHHHHcC
Confidence            2211211110 00235544      45665555555555555555543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.39  E-value=0.0016  Score=66.51  Aligned_cols=106  Identities=13%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|+|+|++|+.+|+.|...|.+|++        ||++.  -..+.+    .+.       +....+. +++ .
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~--------~d~~~--~~~~~~----~~~-------g~~~~~l~e~l-~  209 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL--------YTGRQ--PRPEEA----AEF-------QAEFVSTPELA-A  209 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEE--------EESSS--CCHHHH----HTT-------TCEECCHHHHH-H
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCC--cchhHH----Hhc-------CceeCCHHHHH-h
Confidence            58899999999999999999999999999887        33322  122221    111       1222222 333 4


Q ss_pred             cceEEeeccccc-----ccccccccccc-ceEEEecCCCC-CC-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGP-LT-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p-~T-~eA~~iL~~rGI~  404 (535)
                      +||+++.|....     .|+.+....++ -.+|+..+.++ ++ .+..+.|.+.+|.
T Consensus       210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~  266 (330)
T 2gcg_A          210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA  266 (330)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence            899999998654     34333344454 35778888887 34 4455677776653

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.31  E-value=0.0051  Score=66.89  Aligned_cols=105  Identities=23%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|.|+|+|++|+.+|+.|...|++|++        ||+.-   +.+.    ..+.|       ....+. +++ .
T Consensus       139 ~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~--------~d~~~---~~~~----a~~~g-------~~~~~l~e~~-~  195 (529)
T 1ygy_A          139 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA--------YDPYV---SPAR----AAQLG-------IELLSLDDLL-A  195 (529)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECTTS---CHHH----HHHHT-------CEECCHHHHH-H
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE--------ECCCC---ChhH----HHhcC-------cEEcCHHHHH-h
Confidence            58999999999999999999999999999987        44432   2222    12222       222222 333 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCCCHHH--HHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLTPAA--HAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T~eA--~~iL~~rGI~  404 (535)
                      +||+++.|..     .+.|+.+....++ -.+|+.-+-+++-.+.  .+.|.+..|.
T Consensus       196 ~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~  252 (529)
T 1ygy_A          196 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  252 (529)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             cCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCcc
Confidence            8999999965     3455554555564 4688888888754332  3667776553

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.26  E-value=0.026  Score=56.74  Aligned_cols=127  Identities=12%  Similarity=0.070  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhC-CCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIG-LEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKD  328 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g-~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~  328 (535)
                      .+.|+..+++          ..+ .  ++++++|.|.|.|.+|+.++..|.+.|+ +|+. .            +-+.+.
T Consensus       123 d~~G~~~~l~----------~~~~~--~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v-~------------nR~~~k  177 (297)
T 2egg_A          123 DGLGYVQALE----------EEMNI--TLDGKRILVIGAGGGARGIYFSLLSTAAERIDM-A------------NRTVEK  177 (297)
T ss_dssp             HHHHHHHHHH----------HHTTC--CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEE-E------------CSSHHH
T ss_pred             CHHHHHHHHH----------HhCCC--CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEE-E------------eCCHHH
Confidence            4567666665          233 3  4689999999999999999999999998 6654 3            255666


Q ss_pred             HHHHHHHcCCcccCCCCcccC--C--CCccccceEEeecccccccccc-----cccccc-ceEEEecCCCC-CCHHHHHH
Q psy1913         329 LHTYKITKGTIKGYPGTKSAP--T--DIMFDKVDILVPAAIEKVIRKS-----NADKVQ-AKIIVEAANGP-LTPAAHAM  397 (535)
Q Consensus       329 L~~~~~~~g~v~~~~~a~~i~--~--ell~~~~DILiPaA~~~~It~~-----na~~i~-AkiIvEgAN~p-~T~eA~~i  397 (535)
                      +.+..++.+..  + + ..++  .  +.+ .++||+|-|+.-......     ....++ -.+|++-.-+| .|+ -.+.
T Consensus       178 a~~la~~~~~~--~-~-~~~~~~~~~~~~-~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-ll~~  251 (297)
T 2egg_A          178 AERLVREGDER--R-S-AYFSLAEAETRL-AEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETK-WLKE  251 (297)
T ss_dssp             HHHHHHHSCSS--S-C-CEECHHHHHHTG-GGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCH-HHHH
T ss_pred             HHHHHHHhhhc--c-C-ceeeHHHHHhhh-ccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCH-HHHH
Confidence            66666654321  0 0 1111  1  222 479999999875442110     112232 46888988888 565 4455


Q ss_pred             HHhCCceeecc
Q psy1913         398 LLKKNVLIIPD  408 (535)
Q Consensus       398 L~~rGI~viPD  408 (535)
                      .+++|+.+++.
T Consensus       252 A~~~G~~~v~G  262 (297)
T 2egg_A          252 AKARGARVQNG  262 (297)
T ss_dssp             HHHTTCEEECS
T ss_pred             HHHCcCEEECC
Confidence            78899988765

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.25  E-value=0.0074  Score=60.96  Aligned_cols=95  Identities=17%  Similarity=0.224  Sum_probs=63.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTE  323 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~d  323 (535)
                      -.+.|.+|+...++          +.+.  +++|++++|.|.|+ ||..+|++|...  |+.|.. ++++        + 
T Consensus       137 ~~PcTp~gi~~ll~----------~~~i--~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv-~h~~--------t-  194 (281)
T 2c2x_A          137 PLPCTPRGIVHLLR----------RYDI--SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTL-CHTG--------T-  194 (281)
T ss_dssp             CCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEE-ECTT--------C-
T ss_pred             CCCChHHHHHHHHH----------HcCC--CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEE-EECc--------h-
Confidence            36889999776665          3454  58999999999997 699999999999  888765 3321        1 


Q ss_pred             CCHHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCC
Q psy1913         324 INYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGP  389 (535)
Q Consensus       324 LDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p  389 (535)
                      -|   |.+                     ....+||+|-|+. .+.|+.+-+..  --+|+.-+-++
T Consensus       195 ~~---L~~---------------------~~~~ADIVI~Avg~p~~I~~~~vk~--GavVIDVgi~r  235 (281)
T 2c2x_A          195 RD---LPA---------------------LTRQADIVVAAVGVAHLLTADMVRP--GAAVIDVGVSR  235 (281)
T ss_dssp             SC---HHH---------------------HHTTCSEEEECSCCTTCBCGGGSCT--TCEEEECCEEE
T ss_pred             hH---HHH---------------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEccCCC
Confidence            11   111                     1247899998887 55677665432  23455544433

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.25  E-value=0.0026  Score=61.79  Aligned_cols=92  Identities=18%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH--------------HHHHHHHcCCcccC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD--------------LHTYKITKGTIKGY  342 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~--------------L~~~~~~~g~v~~~  342 (535)
                      ++.+++|.|.|+|++|..+|+.|.+.|..|+.             .|.+.+.              +.++..+.+     
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTI-------------GTRDPKATLARAEPDAMGAPPFSQWLPEHP-----   77 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHTCC-------CCHHHHGGGST-----
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEE-------------EeCChhhhhhhhhhhhhcchhhhHHHhhcC-----
Confidence            57889999999999999999999999999876             2244443              222222211     


Q ss_pred             CCCcccCC-CCccccceEEeecccccccccc---c-cccccceEEEecCCC
Q psy1913         343 PGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---N-ADKVQAKIIVEAANG  388 (535)
Q Consensus       343 ~~a~~i~~-ell~~~~DILiPaA~~~~It~~---n-a~~i~AkiIvEgAN~  388 (535)
                       .....+. +.+ .+||++|-|.....+...   . .+.+.-++|+..+|+
T Consensus        78 -~~~~~~~~e~~-~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~  126 (245)
T 3dtt_A           78 -HVHLAAFADVA-AGAELVVNATEGASSIAALTAAGAENLAGKILVDIANP  126 (245)
T ss_dssp             -TCEEEEHHHHH-HHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred             -ceeccCHHHHH-hcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence             1111112 332 479999999876654321   1 223355799999985

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.22  E-value=0.0053  Score=65.72  Aligned_cols=117  Identities=12%  Similarity=0.061  Sum_probs=75.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc--
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD--  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~--  355 (535)
                      .++|.|.|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..++.+.    .+....+.  ++...  
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~~~~----~gi~~~~s~~e~v~~l~   67 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAI-------------YNRTTSKTEEVFKEHQD----KNLVFTKTLEEFVGSLE   67 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHHHHHHTTT----SCEEECSSHHHHHHTBC
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEE-------------EcCCHHHHHHHHHhCcC----CCeEEeCCHHHHHhhcc
Confidence            36899999999999999999999998766             33556666666654320    11222222  34332  


Q ss_pred             cceEEeecccccccccccc----cccc-ceEEEecCCCC--CCHHHHHHHHhCCceeeccccccccC
Q psy1913         356 KVDILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLIIPDIFANAGG  415 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~viPD~laNaGG  415 (535)
                      +||+++-|........+-+    +.++ -++|+..+|+.  .+.+..+.|.++|+.++.  ..++||
T Consensus        68 ~aDvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~--~pv~gg  132 (474)
T 2iz1_A           68 KPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIG--TGVSGG  132 (474)
T ss_dssp             SSCEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEE--EEECSH
T ss_pred             CCCEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEEC--CCCCCC
Confidence            5999999987653222222    3333 36899999986  244555667778988873  244554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.22  E-value=0.0061  Score=62.16  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=69.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCC-CCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPD-KGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp-~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      .+.|++|.|.|+|++|+.+|+.|...|++|++        ||+ ..   +..   . ..+.|       ....+.  +++
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~--------~d~~~~---~~~---~-~~~~g-------~~~~~~l~ell  200 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDY--------FDTHRA---SSS---D-EASYQ-------ATFHDSLDSLL  200 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECSSCC---CHH---H-HHHHT-------CEECSSHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCCc---Chh---h-hhhcC-------cEEcCCHHHHH
Confidence            58999999999999999999999999999987        444 33   221   1 11222       222322  444


Q ss_pred             cccceEEeecccc-----cccccccccccc-ceEEEecCCCC-CCH-HHHHHHHhCCce
Q psy1913         354 FDKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGP-LTP-AAHAMLLKKNVL  404 (535)
Q Consensus       354 ~~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p-~T~-eA~~iL~~rGI~  404 (535)
                       ..|||++-|...     +.|+.+....++ -.+|+.-+-++ ++. +..+.|.+..|.
T Consensus       201 -~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~  258 (320)
T 1gdh_A          201 -SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA  258 (320)
T ss_dssp             -HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             -hhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence             489999998763     345554555564 36788888887 443 345678777654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.15  E-value=0.0049  Score=63.10  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=66.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|.+|++        ||++.   +.+.    ..+.|       ....+. +++ .
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~--------~d~~~---~~~~----~~~~g-------~~~~~l~~~l-~  203 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNMRILY--------YSRTR---KEEV----ERELN-------AEFKPLEDLL-R  203 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC---CHHH----HHHHC-------CEECCHHHHH-H
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCCEEEE--------ECCCc---chhh----HhhcC-------cccCCHHHHH-h
Confidence            58999999999999999999999999999887        34332   2211    11222       121111 333 4


Q ss_pred             cceEEeecccccc-----cccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913         356 KVDILVPAAIEKV-----IRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~~~~-----It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI  403 (535)
                      +||+++-|.....     ++.+-...++ -.+|+.-+.+++ +. ...+.|.+..|
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i  259 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWI  259 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence            8999999987544     3333333443 357778888874 33 33456776554

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.14  E-value=0.0075  Score=61.76  Aligned_cols=103  Identities=23%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|+|+|++|+.+|+.|...|++|++        ||+..  -..  +    ++      +  ....+. +++ .
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~d~~~--~~~--~----~~------~--~~~~~l~ell-~  197 (331)
T 1xdw_A          143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG--------EDVFE--IKG--I----ED------Y--CTQVSLDEVL-E  197 (331)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--CCS--C----TT------T--CEECCHHHHH-H
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCc--cHH--H----Hh------c--cccCCHHHHH-h
Confidence            57899999999999999999999999999887        33332  100  0    00      0  111121 344 3


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      .|||++.|..-     +.|+.+....++ -.+++.-+-+++ . ....+.|.+.+|.
T Consensus       198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG  254 (331)
T ss_dssp             HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCce
Confidence            79999998653     455555556665 367888888873 4 3445678887765

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.07  E-value=0.013  Score=61.89  Aligned_cols=111  Identities=17%  Similarity=0.255  Sum_probs=76.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      +++..+|+|.|.|.+|.++|++|...|++=|-+.|++|.|+...+.+|+..+. .+...+..   +.....+. +.+ ..
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~-~fa~~~~~---~~~~~~L~-eav-~~  258 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHL-DIAKVTNR---EFKSGTLE-DAL-EG  258 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC----CHHHHHSC---TTCCCSCS-HHH-HT
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHH-HHhhccCc---ccchhhHH-HHh-cc
Confidence            58999999999999999999999999997778899999998765322543221 11111110   00000000 222 25


Q ss_pred             ceEEeeccccccccccccccccc-eEEEecCCCC--CCHH
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQA-KIIVEAANGP--LTPA  393 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~p--~T~e  393 (535)
                      +||||=++.++.+|++-+.++.- .||.--||--  +|||
T Consensus       259 ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe  298 (398)
T 2a9f_A          259 ADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIPEIYPD  298 (398)
T ss_dssp             TCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSSCSSCHH
T ss_pred             CCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCCccCCHH
Confidence            79999999999999999998854 7888888842  4554

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.07  E-value=0.012  Score=59.48  Aligned_cols=53  Identities=21%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      -.+.|.+|+...++          +.+.  +++|++++|.|.|+ ||+.+|.+|+..|+.|. |+++
T Consensus       139 ~~PcTp~gv~~lL~----------~~~i--~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt-v~h~  192 (285)
T 3p2o_A          139 FLPCTPLGVMKLLK----------AYEI--DLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHI  192 (285)
T ss_dssp             CCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence            46889999876655          4554  58999999999988 89999999999999865 4443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.06  E-value=0.0065  Score=65.84  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=62.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|.|.|+|.||..+|+.+...|++|++             .|.+...+...++. |       ++.++. +++ .
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv-------------~d~~~~~~~~A~~~-G-------a~~~~l~e~l-~  328 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSV-------------TEIDPINALQAMME-G-------FDVVTVEEAI-G  328 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-T-------CEECCHHHHG-G
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHc-C-------CEEecHHHHH-h
Confidence            36899999999999999999999999999998             55777776554432 2       222222 443 4


Q ss_pred             cceEEeeccc-ccccccccccccc-ceEEEecCCCC
Q psy1913         356 KVDILVPAAI-EKVIRKSNADKVQ-AKIIVEAANGP  389 (535)
Q Consensus       356 ~~DILiPaA~-~~~It~~na~~i~-AkiIvEgAN~p  389 (535)
                      .+||+|-|+. .+.|+.+....++ --+|+.-+.++
T Consensus       329 ~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          329 DADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             GCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            7999999975 3445545555554 23445445444

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.04  E-value=0.0082  Score=60.78  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+|+...++          +.+.  +++|++++|.|.|+ ||+.+|.+|+..|+.|..
T Consensus       140 ~~PcTp~gv~~lL~----------~~~i--~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv  190 (286)
T 4a5o_A          140 LRPCTPKGIMTLLA----------STGA--DLYGMDAVVVGASNIVGRPMALELLLGGCTVTV  190 (286)
T ss_dssp             SCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEE
Confidence            36889999876655          4554  58999999999987 999999999999998765

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.00  E-value=0.011  Score=57.20  Aligned_cols=102  Identities=9%  Similarity=0.106  Sum_probs=65.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|..+++.|.+.|..|+.             .|.+.+.+.+..++.|       ....+.  +++. +||
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~-------------~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~-~~D   62 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELII-------------SGSSLERSKEIAEQLA-------LPYAMSHQDLID-QVD   62 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEE-------------ECSSHHHHHHHHHHHT-------CCBCSSHHHHHH-TCS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEE-------------ECCCHHHHHHHHHHcC-------CEeeCCHHHHHh-cCC
Confidence            5899999999999999999999976654             3355666666655433       111222  3443 899


Q ss_pred             EEeeccccccccccccccc-cceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913         359 ILVPAAIEKVIRKSNADKV-QAKIIVEAANGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i-~AkiIvEgAN~p~T~eA~~iL~~rGI~v  405 (535)
                      +++-|.... ...+-+..+ .-++|++-.++-...+..+++ .++..+
T Consensus        63 ~Vi~~v~~~-~~~~v~~~l~~~~~vv~~~~~~~~~~l~~~~-~~~~~~  108 (259)
T 2ahr_A           63 LVILGIKPQ-LFETVLKPLHFKQPIISMAAGISLQRLATFV-GQDLPL  108 (259)
T ss_dssp             EEEECSCGG-GHHHHHTTSCCCSCEEECCTTCCHHHHHHHH-CTTSCE
T ss_pred             EEEEEeCcH-hHHHHHHHhccCCEEEEeCCCCCHHHHHHhc-CCCCCE
Confidence            999998743 333444444 335888888765444555554 355433

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.98  E-value=0.0088  Score=58.97  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|++|..+++.|.+.|..|+.             .|.+.+.+.+..+. |       ....+.  +++ .+||
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~-------------~~~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D   62 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYA-------------FDLMEANVAAVVAQ-G-------AQACENNQKVA-AASD   62 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHTT-T-------CEECSSHHHHH-HHCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHC-C-------CeecCCHHHHH-hCCC
Confidence            6899999999999999999999998875             33555665554432 2       222222  333 3799


Q ss_pred             EEeeccccccccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913         359 ILVPAAIEKVIRK-------SNADKVQ-AKIIVEAANGP--LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       359 ILiPaA~~~~It~-------~na~~i~-AkiIvEgAN~p--~T~eA~~iL~~rGI~vi  406 (535)
                      +++-|.....-..       +-.+.++ -++|+.-+|+.  .+.+..+.|.++|+.++
T Consensus        63 ~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           63 IIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999985332221       2122333 36888888886  33456667888898876

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.97  E-value=0.017  Score=55.82  Aligned_cols=96  Identities=11%  Similarity=0.137  Sum_probs=61.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC-C-CCccccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP-T-DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~-~-ell~~~~  357 (535)
                      ++|.|.|.|++|..+|+.|.+.| ..|+.             .|.+.+.+.+..+..|       ....+ . +.+  +|
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~-------------~~r~~~~~~~~~~~~g-------~~~~~~~~~~~--~~   58 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYI-------------ANRGAEKRERLEKELG-------VETSATLPELH--SD   58 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEE-------------ECSSHHHHHHHHHHTC-------CEEESSCCCCC--TT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEE-------------ECCCHHHHHHHHHhcC-------CEEeCCHHHHh--cC
Confidence            47999999999999999999999 88766             3355666666655433       22222 2 455  89


Q ss_pred             eEEeecccccccccccccccc--ceEEEecCCCCCCHHHHHHHH
Q psy1913         358 DILVPAAIEKVIRKSNADKVQ--AKIIVEAANGPLTPAAHAMLL  399 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i~--AkiIvEgAN~p~T~eA~~iL~  399 (535)
                      |+++-|.....+ .+-+..+.  -++|+.-+|+-......+.|.
T Consensus        59 D~vi~~v~~~~~-~~v~~~l~~~~~ivv~~~~g~~~~~l~~~~~  101 (263)
T 1yqg_A           59 DVLILAVKPQDM-EAACKNIRTNGALVLSVAAGLSVGTLSRYLG  101 (263)
T ss_dssp             SEEEECSCHHHH-HHHHTTCCCTTCEEEECCTTCCHHHHHHHTT
T ss_pred             CEEEEEeCchhH-HHHHHHhccCCCEEEEecCCCCHHHHHHHcC
Confidence            999999873322 22222332  468888777654333444443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.93  E-value=0.016  Score=61.60  Aligned_cols=102  Identities=16%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++        ||+.. ...          .      .++.....  +++ 
T Consensus       153 el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------yd~~~-~~~----------~------~~~~~~~sl~ell-  206 (416)
T 3k5p_A          153 EVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY--------YDTSD-KLQ----------Y------GNVKPAASLDELL-  206 (416)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECTTC-CCC----------B------TTBEECSSHHHHH-
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEE--------ECCcc-hhc----------c------cCcEecCCHHHHH-
Confidence            58899999999999999999999999999987        44332 000          0      01222223  343 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      ..|||++-|...     +.|+.+....++ -.+++..|-+++ . .+..+.|.+..|.
T Consensus       207 ~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~  264 (416)
T 3k5p_A          207 KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLA  264 (416)
T ss_dssp             HHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             hhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCcc
Confidence            479999988764     556666556665 478999999984 3 3445667777664

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.91  E-value=0.012  Score=60.82  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|.+|++        ||+..  -.         ..       +......  +++ 
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~dr~~--~~---------~~-------~~~~~~sl~ell-  220 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGMSVRY--------WNRST--LS---------GV-------DWIAHQSPVDLA-  220 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECSSC--CT---------TS-------CCEECSSHHHHH-
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEE--------EcCCc--cc---------cc-------CceecCCHHHHH-
Confidence            68999999999999999999999999999886        33333  10         00       1111222  333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCCC--HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPLT--PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~T--~eA~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++..|.+++-  .+..+.|.+..|.
T Consensus       221 ~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~  278 (340)
T 4dgs_A          221 RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIA  278 (340)
T ss_dssp             HTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSS
T ss_pred             hcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence            47899998876     3455555555554 3688899998853  3334567666553

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.91  E-value=0.0087  Score=62.16  Aligned_cols=45  Identities=16%  Similarity=0.146  Sum_probs=38.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC----CCeEEEEecCCceEeCCC--CCCCCH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG----RAKCLAIVEHDTAIVPDK--GTEINY  326 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~----GakVVaVsD~~G~iynp~--G~dLDi  326 (535)
                      -.+|+|.|+|+||+.+++.|.+.    +.+|++|+|++...++++  |  ++.
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~g--i~~   54 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSP--LNV   54 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSC--CSC
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCC--CCc
Confidence            36899999999999999999886    379999999988888877  8  654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.89  E-value=0.018  Score=58.39  Aligned_cols=96  Identities=19%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      -.+.|.+|+...++          +.+.  +++|++|+|.|.|+ ||..+|++|...|+.|.. ++++        + -|
T Consensus       138 ~~PcTp~gi~~ll~----------~~~i--~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv-~hs~--------t-~~  195 (288)
T 1b0a_A          138 LRPCTPRGIVTLLE----------RYNI--DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTV-THRF--------T-KN  195 (288)
T ss_dssp             SCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEE-ECSS--------C-SC
T ss_pred             CCCCcHHHHHHHHH----------HcCC--CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEE-EeCC--------c-hh
Confidence            36889999776665          4554  58999999999997 799999999999999765 3321        1 11


Q ss_pred             HHHHHHHHHHcCCcccCCCCcccCCCCccccceEEeeccc-cccccccccccccceEEEecCCCCC
Q psy1913         326 YKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI-EKVIRKSNADKVQAKIIVEAANGPL  390 (535)
Q Consensus       326 i~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~-~~~It~~na~~i~AkiIvEgAN~p~  390 (535)
                      +   .+                     ....+||+|-|.. .+.|+.+-+..  --+|+.-+-+++
T Consensus       196 L---~~---------------------~~~~ADIVI~Avg~p~lI~~~~vk~--GavVIDVgi~r~  235 (288)
T 1b0a_A          196 L---RH---------------------HVENADLLIVAVGKPGFIPGDWIKE--GAIVIDVGINRL  235 (288)
T ss_dssp             H---HH---------------------HHHHCSEEEECSCCTTCBCTTTSCT--TCEEEECCCEEC
T ss_pred             H---HH---------------------HhccCCEEEECCCCcCcCCHHHcCC--CcEEEEccCCcc
Confidence            1   11                     1246788888887 55677665421  236666665543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.89  E-value=0.013  Score=57.68  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|..+++.|.+.|.+|+.             .|.+.+.+.+..+. |       ....+.  +++ .+||
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~-------------~~~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D   63 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVV-------------SDRNPEAIADVIAA-G-------AETASTAKAIA-EQCD   63 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-T-------CEECSSHHHHH-HHCS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHHHC-C-------CeecCCHHHHH-hCCC
Confidence            5899999999999999999999998866             33566666555443 2       222222  333 3799


Q ss_pred             EEeeccccccccccc-------ccccc-ceEEEecCCCCC--CHHHHHHHHhCCceee
Q psy1913         359 ILVPAAIEKVIRKSN-------ADKVQ-AKIIVEAANGPL--TPAAHAMLLKKNVLII  406 (535)
Q Consensus       359 ILiPaA~~~~It~~n-------a~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~vi  406 (535)
                      +++-|.....-..+-       .+.++ -++|+.-+|+..  +.+..+.+.++|+.++
T Consensus        64 ~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  121 (299)
T 1vpd_A           64 VIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML  121 (299)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             EEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            999998733221111       12232 368888888863  3455667888898775

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.88  E-value=0.011  Score=58.26  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      -++|+|.|+|++|..+|+.|.+.  |..|++             .|.+.+.+....+ .|...     ...+.  +.+ .
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~-------------~d~~~~~~~~~~~-~g~~~-----~~~~~~~~~~-~   65 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVG-------------YNRSDRSRDIALE-RGIVD-----EATADFKVFA-A   65 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEE-------------ECSSHHHHHHHHH-TTSCS-----EEESCTTTTG-G
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEE-------------EcCCHHHHHHHHH-cCCcc-----cccCCHHHhh-c
Confidence            36899999999999999999987  567776             3455666655443 33210     11222  333 4


Q ss_pred             cceEEeeccccccccccccc----c-cc-ceEEEecCCCCC--CHHHHHHHHhCCceeecc
Q psy1913         356 KVDILVPAAIEKVIRKSNAD----K-VQ-AKIIVEAANGPL--TPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~----~-i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~viPD  408 (535)
                      +||++|-|.....+ .+-+.    . ++ -.+|+..+|.+.  +....+.|.++++.++|-
T Consensus        66 ~aDvVilavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~  125 (290)
T 3b1f_A           66 LADVIILAVPIKKT-IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGS  125 (290)
T ss_dssp             GCSEEEECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEE
T ss_pred             CCCEEEEcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEe
Confidence            89999999886655 32222    2 32 357887777653  233445554457878773

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.88  E-value=0.031  Score=55.22  Aligned_cols=128  Identities=9%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|+..+++          ..|.  +++++++.|.|.|.+|+.++..|.+.|++|+.             .+-+.+++.
T Consensus       102 D~~G~~~~L~----------~~~~--~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v-------------~~R~~~~a~  156 (272)
T 1p77_A          102 DGIGLVTDLQ----------RLNW--LRPNQHVLILGAGGATKGVLLPLLQAQQNIVL-------------ANRTFSKTK  156 (272)
T ss_dssp             HHHHHHHHHH----------HTTC--CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE-------------EESSHHHHH
T ss_pred             CHHHHHHHHH----------HhCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHH
Confidence            3788777766          2454  47899999999999999999999999988776             235566666


Q ss_pred             HHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccc-ccc--ccc-cceEEEecCCCC-C-CHHHHHHHHhCCc
Q psy1913         331 TYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRK-SNA--DKV-QAKIIVEAANGP-L-TPAAHAMLLKKNV  403 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~-~na--~~i-~AkiIvEgAN~p-~-T~eA~~iL~~rGI  403 (535)
                      +..++.+..   ......+. ++...++||+|-|+.-..... ...  ..+ ...+|++-.-+| . |+.. +..+++|+
T Consensus       157 ~l~~~~~~~---~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t~ll-~~a~~~G~  232 (272)
T 1p77_A          157 ELAERFQPY---GNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFI-ALCKSLGL  232 (272)
T ss_dssp             HHHHHHGGG---SCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHH-HHHHHTTC
T ss_pred             HHHHHcccc---CCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCCHHH-HHHHHcCC
Confidence            665543211   01111111 221137999999987443210 001  112 236788888777 4 6654 45678898


Q ss_pred             e-eec
Q psy1913         404 L-IIP  407 (535)
Q Consensus       404 ~-viP  407 (535)
                      . +++
T Consensus       233 ~~~v~  237 (272)
T 1p77_A          233 TNVSD  237 (272)
T ss_dssp             CCEEC
T ss_pred             CEeeC
Confidence            6 664

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.85  E-value=0.024  Score=57.34  Aligned_cols=100  Identities=9%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++        ||+..  -+  .        +    +  ....+. +++ .
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~--------~dr~~--~~--~--------~----~--~~~~~l~ell-~  173 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRG--------FSRTP--KE--G--------P----W--RFTNSLEEAL-R  173 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEE--------ECSSC--CC--S--------S----S--CCBSCSHHHH-T
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEE--------ECCCc--cc--c--------C----c--ccCCCHHHHH-h
Confidence            58999999999999999999999999999886        33333  10  0        1    0  011111 333 4


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI  403 (535)
                      .|||++-|...     +.|+.+....++ -.+++.-+.+++ .. +..+.|.+..|
T Consensus       174 ~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i  229 (303)
T 1qp8_A          174 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ  229 (303)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT
T ss_pred             hCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCc
Confidence            79999988753     345555555665 468889998884 33 34566777654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.85  E-value=0.014  Score=59.92  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      .++.|+||.|.|+|++|+.+|+.|...|++|++        ||+..  -..  +          ..+  ....+. +++ 
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~d~~~--~~~--~----------~~~--~~~~~l~ell-  195 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA--------YDPYP--MKG--D----------HPD--FDYVSLEDLF-  195 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--CSS--C----------CTT--CEECCHHHHH-
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE--------ECCCc--chh--h----------Hhc--cccCCHHHHH-
Confidence            358999999999999999999999999999987        33333  100  0          000  111122 344 


Q ss_pred             ccceEEeeccccc-----ccccccccccc-ceEEEecCCCC-CCH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGP-LTP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p-~T~-eA~~iL~~rGI~  404 (535)
                      ..|||++-|....     .|+.+-...++ -.+++..+-++ +.. ...+.|.+.+|.
T Consensus       196 ~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          196 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA  253 (333)
T ss_dssp             HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred             hcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence            3899999987643     35444445554 36777777777 443 344667777664

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.85  E-value=0.0093  Score=57.92  Aligned_cols=105  Identities=9%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      +.+++|.|.|+|++|..+++.|.+.|..+|.+.|            .+.+.+.+..+..|       ....+.  +++ .
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~------------~~~~~~~~~~~~~g-------~~~~~~~~~~~-~   67 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYS------------RTEESARELAQKVE-------AEYTTDLAEVN-P   67 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC------------SSHHHHHHHHHHTT-------CEEESCGGGSC-S
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEe------------CCHHHHHHHHHHcC-------CceeCCHHHHh-c
Confidence            4567999999999999999999999998555443            45566666555433       122222  444 3


Q ss_pred             cceEEeeccccccccccccccc-----cceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV-----QAKIIVEAANGPLTPAAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i-----~AkiIvEgAN~p~T~eA~~iL~~rGI  403 (535)
                      +||++|-|.....+ .+-+..+     .-++|+..+|+.......+.+.+.++
T Consensus        68 ~~Dvvi~av~~~~~-~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~~~  119 (266)
T 3d1l_A           68 YAKLYIVSLKDSAF-AELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGV  119 (266)
T ss_dssp             CCSEEEECCCHHHH-HHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSEEE
T ss_pred             CCCEEEEecCHHHH-HHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhccC
Confidence            89999999987754 4333333     24688888887643333333333344

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.84  E-value=0.0055  Score=60.19  Aligned_cols=103  Identities=14%  Similarity=0.050  Sum_probs=63.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|++|..+|+.|.+.|..|+. .|             +.+.+.+..+. |       ....+.  +++ .+||
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~-~~-------------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D   60 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHV-TT-------------IGPVADELLSL-G-------AVNVETARQVT-EFAD   60 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEE-CC-------------SSCCCHHHHTT-T-------CBCCSSHHHHH-HTCS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEE-Ec-------------CHHHHHHHHHc-C-------CcccCCHHHHH-hcCC
Confidence            5899999999999999999999998865 22             11222222221 2       121222  333 3799


Q ss_pred             EEeeccccccccc-------ccccccc-ceEEEecCCCC-C-CHHHHHHHHhCCceee
Q psy1913         359 ILVPAAIEKVIRK-------SNADKVQ-AKIIVEAANGP-L-TPAAHAMLLKKNVLII  406 (535)
Q Consensus       359 ILiPaA~~~~It~-------~na~~i~-AkiIvEgAN~p-~-T~eA~~iL~~rGI~vi  406 (535)
                      +++-|........       +-.+.++ -++|+.-.|+. . +.+..+.+.++|+.++
T Consensus        61 ~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           61 IIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             EEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             EEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999985443222       1122333 46888888885 2 2445566778888776

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.84  E-value=0.086  Score=52.80  Aligned_cols=125  Identities=8%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      +.|...+++          ..|.  +++++++.|.|.|.+|+.++..|.+.|+ +|+. .+            -+.+...
T Consensus       110 ~~G~~~~L~----------~~~~--~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v-~~------------R~~~~a~  164 (281)
T 3o8q_A          110 GEGLVQDLL----------AQQV--LLKGATILLIGAGGAARGVLKPLLDQQPASITV-TN------------RTFAKAE  164 (281)
T ss_dssp             HHHHHHHHH----------HTTC--CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEE-EE------------SSHHHHH
T ss_pred             HHHHHHHHH----------HhCC--CccCCEEEEECchHHHHHHHHHHHhcCCCeEEE-EE------------CCHHHHH
Confidence            677766665          2454  4789999999999999999999999997 5544 33            4455555


Q ss_pred             HHHHHcCCcccCCCCcccCC-CCccccceEEeecccccccccc---cccccc-ceEEEecCCCC-CCHHHHHHHHhCCce
Q psy1913         331 TYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---NADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVL  404 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~---na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~  404 (535)
                      +..++.+..   .....++. ++. .++||+|-|+.-+.....   ....++ ..+|++-.=+| .|+-. +..+++|+.
T Consensus       165 ~la~~~~~~---~~~~~~~~~~l~-~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~  239 (281)
T 3o8q_A          165 QLAELVAAY---GEVKAQAFEQLK-QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFN-QWARQHGCA  239 (281)
T ss_dssp             HHHHHHGGG---SCEEEEEGGGCC-SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCCHHH-HHHHHTTCS
T ss_pred             HHHHHhhcc---CCeeEeeHHHhc-CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccCHHH-HHHHHCCCC
Confidence            555543211   01111222 332 689999988765432211   122343 46889998778 57765 456888985


Q ss_pred             -ee
Q psy1913         405 -II  406 (535)
Q Consensus       405 -vi  406 (535)
                       ++
T Consensus       240 ~~~  242 (281)
T 3o8q_A          240 QAI  242 (281)
T ss_dssp             EEE
T ss_pred             EEE
Confidence             44

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.80  E-value=0.0071  Score=61.73  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=69.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++..-+..   ..++  ++               .+.+.  .+- +++ .
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~---~~~~--~~---------------~~~~~--~~l~ell-~  192 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRK---SWPG--VE---------------SYVGR--EELRAFL-N  192 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCC---CCTT--CE---------------EEESH--HHHHHHH-H
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCch---hhhh--hh---------------hhccc--CCHHHHH-h
Confidence            57899999999999999999999999999998432210   0111  10               00000  011 333 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      .|||++-|..     .+.|+.+....++ -.+++..+-+++ . ....+.|.+..|.
T Consensus       193 ~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~  249 (315)
T 3pp8_A          193 QTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK  249 (315)
T ss_dssp             TCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence            7899988865     3456666666665 478999999984 3 3445678777664

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.79  E-value=0.0088  Score=59.56  Aligned_cols=106  Identities=14%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             CCCcEEEEEccccHHHH-HHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         278 MENKTYIVQGFGNVGFH-AARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~-~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      ++-.+|+|+|+|++|.. .++.|.+ .++++++|+|            .|.+.+.+..++.|.       ...++  +++
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~a~~~~~-------~~~~~~~~ll   64 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFT------------PNKVKREKICSDYRI-------MPFDSIESLA   64 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEEC------------SCHHHHHHHHHHHTC-------CBCSCHHHHH
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEEC------------CCHHHHHHHHHHcCC-------CCcCCHHHHH
Confidence            34579999999999985 8888876 5889999876            556777776666542       11333  567


Q ss_pred             cccceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHH---HHHhCCceeec
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHA---MLLKKNVLIIP  407 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~---iL~~rGI~viP  407 (535)
                      . ++|+++-|+... .+.+.+...   ...++||=   |+  | .++++   ..+++|+.+..
T Consensus        65 ~-~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EK---P~~~~~~~~~~l~~~a~~~g~~~~v  122 (308)
T 3uuw_A           65 K-KCDCIFLHSSTE-THYEIIKILLNLGVHVYVDK---PLASTVSQGEELIELSTKKNLNLMV  122 (308)
T ss_dssp             T-TCSEEEECCCGG-GHHHHHHHHHHTTCEEEECS---SSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred             h-cCCEEEEeCCcH-hHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            7 899999887544 333333222   23577773   32  2 34443   34566765543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.79  E-value=0.096  Score=52.22  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=78.7

Q ss_pred             HHHHHHH-HHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHH
Q psy1913         252 GRGVFTA-AEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDL  329 (535)
Q Consensus       252 g~GV~~~-i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L  329 (535)
                      +.|...+ ++          ..|.  +++++++.|.|.|.+|+.++..|.+.|+ +|+. .+            -+.+..
T Consensus       103 ~~G~~~~lL~----------~~~~--~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i-~~------------R~~~~a  157 (272)
T 3pwz_A          103 GIGLLRDIEE----------NLGE--PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI-AN------------RDMAKA  157 (272)
T ss_dssp             HHHHHHHHHT----------TSCC--CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEE-EC------------SCHHHH
T ss_pred             HHHHHHHHHH----------HcCC--CccCCEEEEECccHHHHHHHHHHHHcCCCEEEE-Ee------------CCHHHH
Confidence            6776665 43          2344  4789999999999999999999999997 5544 33            445666


Q ss_pred             HHHHHHcCCcccCCCCcccCC-CCccccceEEeecccccccccc---cccccc-ceEEEecCCCC-CCHHHHHHHHhCCc
Q psy1913         330 HTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---NADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNV  403 (535)
Q Consensus       330 ~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~---na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI  403 (535)
                      .+..++.+.    .....++- ++-..++||+|-|+.-+.-...   ....++ ..+|++-.=+| -|+-.. .-+++|+
T Consensus       158 ~~la~~~~~----~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~ll~-~A~~~G~  232 (272)
T 3pwz_A          158 LALRNELDH----SRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTPFLR-LAREQGQ  232 (272)
T ss_dssp             HHHHHHHCC----TTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCHHHH-HHHHHSC
T ss_pred             HHHHHHhcc----CCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCHHHH-HHHHCCC
Confidence            666655432    01122222 3222689999988764432111   122333 46889988778 577544 4478887


Q ss_pred             e-ee
Q psy1913         404 L-II  406 (535)
Q Consensus       404 ~-vi  406 (535)
                      . ++
T Consensus       233 ~~~~  236 (272)
T 3pwz_A          233 ARLA  236 (272)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            5 44

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.79  E-value=0.014  Score=59.05  Aligned_cols=53  Identities=26%  Similarity=0.348  Sum_probs=43.1

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      -.+.|.+|+...++          +.+.  +++|++++|.|.|+ ||..+|.+|...|+.|+ |+.+
T Consensus       140 ~~PcTp~gv~~lL~----------~~~i--~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs  193 (285)
T 3l07_A          140 LESCTPKGIMTMLR----------EYGI--KTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHR  193 (285)
T ss_dssp             CCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCCHHHHHHHHH----------HhCC--CCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeC
Confidence            36889999876665          3554  58999999999988 89999999999999864 4543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.73  E-value=0.018  Score=59.14  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++        ||++.....                  +....+.  +++ 
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~--------~dr~~~~~~------------------g~~~~~~l~ell-  213 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCPISY--------FSRSKKPNT------------------NYTYYGSVVELA-  213 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCCEEE--------ECSSCCTTC------------------CSEEESCHHHHH-
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEE--------ECCCchhcc------------------CceecCCHHHHH-
Confidence            68999999999999999999999999999876        333320000                  1121222  333 


Q ss_pred             ccceEEeeccccc-----ccccccccccc-ceEEEecCCCCCC--HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIEK-----VIRKSNADKVQ-AKIIVEAANGPLT--PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~~-----~It~~na~~i~-AkiIvEgAN~p~T--~eA~~iL~~rGI~  404 (535)
                      .+|||++-|...+     .|+.+....++ -.+|+..+.+++.  .+..+.|.+.+|.
T Consensus       214 ~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~  271 (333)
T 3ba1_A          214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG  271 (333)
T ss_dssp             HTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSC
T ss_pred             hcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCe
Confidence            4899999987644     34333334443 3578888888843  4555677776664

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.71  E-value=0.011  Score=63.46  Aligned_cols=109  Identities=12%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCC--CCcc--c
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPT--DIMF--D  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~--ell~--~  355 (535)
                      ++|.|.|+|++|..+|..|.+.|..|+.             .|.+.+.+.+..+ +..   + .+....+.  ++..  .
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v-------------~dr~~~~~~~l~~~~~~---g-~gi~~~~~~~e~v~~l~   65 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCA-------------FNRTVSKVDDFLANEAK---G-TKVLGAHSLEEMVSKLK   65 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSTHHHHHHHHTTTT---T-SSCEECSSHHHHHHHBC
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHhcccc---C-CCeEEeCCHHHHHhhcc
Confidence            5799999999999999999999998765             2244456655554 210   0 11222222  3443  3


Q ss_pred             cceEEeeccccccccccccc----ccc-ceEEEecCCCCC--CHHHHHHHHhCCceee
Q psy1913         356 KVDILVPAAIEKVIRKSNAD----KVQ-AKIIVEAANGPL--TPAAHAMLLKKNVLII  406 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~----~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~vi  406 (535)
                      +||++|-|.....-..+.+.    .++ -++|+...|+..  +.+..+.|.++|+.++
T Consensus        66 ~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           66 KPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             SSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            89999999876533333333    333 368999999873  3455667888898876

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=95.67  E-value=0.031  Score=56.21  Aligned_cols=106  Identities=17%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHH-H-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFR-R-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~-e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +-.+|+|+|+|++|...++.|. + .+++||+|+|            .+.+.+.+..++.|.      ...++.  +++.
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d------------~~~~~~~~~a~~~g~------~~~~~~~~~~l~   68 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACA------------LDSNQLEWAKNELGV------ETTYTNYKDMID   68 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEEC------------SCHHHHHHHHHTTCC------SEEESCHHHHHT
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEec------------CCHHHHHHHHHHhCC------CcccCCHHHHhc
Confidence            4479999999999999999888 5 4889999876            556666666555432      122333  5554


Q ss_pred             -ccceEEeeccccccccccccccc-c--ceEEEecCCCCC--C-HHHHHHH---HhC-Cceee
Q psy1913         355 -DKVDILVPAAIEKVIRKSNADKV-Q--AKIIVEAANGPL--T-PAAHAML---LKK-NVLII  406 (535)
Q Consensus       355 -~~~DILiPaA~~~~It~~na~~i-~--AkiIvEgAN~p~--T-~eA~~iL---~~r-GI~vi  406 (535)
                       .++|+++-|+.. ..+.+.+... +  ..+++|-   |+  + .++.++.   +++ |+.+.
T Consensus        69 ~~~~D~V~i~tp~-~~h~~~~~~al~~G~~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~  127 (346)
T 3cea_A           69 TENIDAIFIVAPT-PFHPEMTIYAMNAGLNVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQ  127 (346)
T ss_dssp             TSCCSEEEECSCG-GGHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHTCTTSCEE
T ss_pred             CCCCCEEEEeCCh-HhHHHHHHHHHHCCCEEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEE
Confidence             478998888753 3333333222 2  2466653   42  3 3444432   456 66554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.013  Score=63.32  Aligned_cols=110  Identities=12%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH-HcCCcccCCCCcccCC--CCccc-
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI-TKGTIKGYPGTKSAPT--DIMFD-  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~-~~g~v~~~~~a~~i~~--ell~~-  355 (535)
                      ..+|.|.|.|++|..+|+.|.+.|..|++             .|.+.+.+.+..+ +.+   + .+....+.  ++... 
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v-------------~dr~~~~~~~l~~~~~~---~-~gi~~~~s~~e~v~~l   72 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCA-------------YNRTQSKVDHFLANEAK---G-KSIIGATSIEDFISKL   72 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSSHHHHHHHHTTTT---T-SSEECCSSHHHHHHTS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHccccc---C-CCeEEeCCHHHHHhcC
Confidence            35899999999999999999999999876             3355566666554 211   0 11221222  33321 


Q ss_pred             -cceEEeecccccccccccc----cccc-ceEEEecCCCCC--CHHHHHHHHhCCceee
Q psy1913         356 -KVDILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGPL--TPAAHAMLLKKNVLII  406 (535)
Q Consensus       356 -~~DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~vi  406 (535)
                       +||++|-|........+.+    +.++ -.+|+...|+..  |.+..+.|.++|+.++
T Consensus        73 ~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v  131 (497)
T 2p4q_A           73 KRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFV  131 (497)
T ss_dssp             CSSCEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCcee
Confidence             4999999887653333222    3333 379999999873  4455567888999876

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.64  E-value=0.015  Score=60.06  Aligned_cols=103  Identities=18%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++        ||+..  -.  .    . +.       .....+. +++ .
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~--------~d~~~--~~--~----~-~~-------~~~~~~l~ell-~  199 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIA--------YDVAY--NP--E----F-EP-------FLTYTDFDTVL-K  199 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--CG--G----G-TT-------TCEECCHHHHH-H
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEE--------ECCCh--hh--h----h-hc-------cccccCHHHHH-h
Confidence            57899999999999999999999999999988        44443  10  0    0 00       1122222 343 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      .|||++-|..     .+.|+.+....++ -.+++.-|-+++ . ....+.|.+..|.
T Consensus       200 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  256 (343)
T 2yq5_A          200 EADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIA  256 (343)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred             cCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCc
Confidence            7999998876     3556655555564 368899999984 3 3445678777663

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.62  E-value=0.01  Score=61.95  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+||.|.|+|++|+.+|+.|...|++|++        ||+..   ..+..    .+.|       .+..+. +++ .
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~--------~d~~~---~~~~~----~~~g-------~~~~~l~ell-~  229 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRV--------FDPWL---PRSML----EENG-------VEPASLEDVL-T  229 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEE--------ECSSS---CHHHH----HHTT-------CEECCHHHHH-H
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCCEEEE--------ECCCC---CHHHH----hhcC-------eeeCCHHHHH-h
Confidence            57899999999999999999999999999987        44442   22211    1221       222222 443 4


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-C-HHHHHHHHhCCce
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-T-PAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T-~eA~~iL~~rGI~  404 (535)
                      .|||++-|..-     +.|+.+....++ -.+++.-|-|++ . .+..+.|.+..|.
T Consensus       230 ~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  286 (365)
T 4hy3_A          230 KSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV  286 (365)
T ss_dssp             SCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE
T ss_pred             cCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce
Confidence            79999988663     356666556664 368889998884 3 3344667776654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.57  E-value=0.028  Score=59.27  Aligned_cols=102  Identities=13%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|+|+.|.|+|++|+.+|+.|...|++|++        ||+..  -.         ..+      +....+.  +++ 
T Consensus       142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~--~~---------~~~------~~~~~~~l~ell-  195 (404)
T 1sc6_A          142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYF--------YDIEN--KL---------PLG------NATQVQHLSDLL-  195 (404)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--CC---------CCT------TCEECSCHHHHH-
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEE--------EcCCc--hh---------ccC------CceecCCHHHHH-
Confidence            58999999999999999999999999999987        44443  10         001      1222322  344 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI~  404 (535)
                      ..||+++-|...     +.|+.+....++ -.+++..|-+.+ .. +..+.|.+..|.
T Consensus       196 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~  253 (404)
T 1sc6_A          196 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA  253 (404)
T ss_dssp             HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             hcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence            478999988664     355555555555 368888888884 43 335667766553

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.56  E-value=0.0039  Score=53.81  Aligned_cols=32  Identities=28%  Similarity=0.473  Sum_probs=27.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++|+|.|+|.+|+.+++.|.+.|++|+.+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~   35 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAV   35 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            45678999999999999999999999998873

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.55  E-value=0.018  Score=58.88  Aligned_cols=119  Identities=17%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC--------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG--------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~--------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      -.+|+|.|+|+||+.+++.|.+.        +.+|++|+|++.....+.   +|.+.+.+.... +.+..+... ..+. 
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~-~~d~~   80 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER---IDIGKVISYKEK-GSLDSLEYE-SISAS   80 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT---CCHHHHHHHHHT-TCGGGCCSE-ECCHH
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc---cChHHHhhhhcc-CCcccccCC-CCCHH
Confidence            46899999999999999999764        479999999987776542   665555443322 222111110 0122 


Q ss_pred             CCccccceEEeeccccccccccccc-----ccc--ceEEEecCCC-CCCHHHHH---HHHhCCceee
Q psy1913         351 DIMFDKVDILVPAAIEKVIRKSNAD-----KVQ--AKIIVEAANG-PLTPAAHA---MLLKKNVLII  406 (535)
Q Consensus       351 ell~~~~DILiPaA~~~~It~~na~-----~i~--AkiIvEgAN~-p~T~eA~~---iL~~rGI~vi  406 (535)
                      +++..++||++.|+..+ -|.+.+.     -++  ..+|++  |- |+..++.+   .-+++|+.+.
T Consensus        81 ~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvta--nK~pla~~~~eL~~~A~~~gv~~~  144 (331)
T 3c8m_A           81 EALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTA--NKSGLANFWPEIMEYARSNNRRIR  144 (331)
T ss_dssp             HHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEEC--CCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEec--CchhhHHHHHHHHHHHHHcCCEEE
Confidence            45566899999999875 2333222     122  245542  32 33344444   3456787665

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.55  E-value=0.17  Score=53.91  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=35.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      ++|+|.|.|.||..+|..|++.|..|++             .|.|.+.+..+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~-------------~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRC-------------IDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEE-------------EECCHHHHHHHHc
Confidence            5899999999999999999999999998             5577777766655

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.54  E-value=0.089  Score=54.98  Aligned_cols=122  Identities=11%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc---------CCCC-cccCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG---------YPGT-KSAPT  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~---------~~~a-~~i~~  350 (535)
                      ++|+|.|.|.||..+|..|++ |..|++             .|.|.+.+..+.+..-.+..         .++. ...+.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~-------------~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~   66 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTI-------------VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLD   66 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEE-------------ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEE-------------EECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCC
Confidence            379999999999999999999 999888             34666665554432111100         0000 11111


Q ss_pred             --CCccccceEEeecccccc----------cccccccc---cc--ceEEEecCCCCC-CHHHHHHHHhCCceeecccccc
Q psy1913         351 --DIMFDKVDILVPAAIEKV----------IRKSNADK---VQ--AKIIVEAANGPL-TPAAHAMLLKKNVLIIPDIFAN  412 (535)
Q Consensus       351 --ell~~~~DILiPaA~~~~----------It~~na~~---i~--AkiIvEgAN~p~-T~eA~~iL~~rGI~viPD~laN  412 (535)
                        +. -.+||++|-|.....          ...+-+..   ++  +-+|.+..|.|- +.+..+.+.++.|.+.|.++ .
T Consensus        67 ~~~~-~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~-~  144 (402)
T 1dlj_A           67 SKAA-YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFL-R  144 (402)
T ss_dssp             HHHH-HHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCC-C
T ss_pred             HHHH-hcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCccc-c
Confidence              11 137999999976552          01111111   22  234556999994 45555666666788888754 5


Q ss_pred             ccCcch
Q psy1913         413 AGGVTV  418 (535)
Q Consensus       413 aGGViv  418 (535)
                      .|.++.
T Consensus       145 ~G~a~~  150 (402)
T 1dlj_A          145 ESKALY  150 (402)
T ss_dssp             TTSTTH
T ss_pred             Ccchhh
Confidence            555443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.49  E-value=0.019  Score=56.04  Aligned_cols=97  Identities=13%  Similarity=0.225  Sum_probs=56.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      +++|++|.|.|.|.||...++.|.+.|++|+.|+.           +++ ++|.++.++ +.+.-..  ..+..+.+ ..
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap-----------~~~-~~l~~l~~~-~~i~~i~--~~~~~~dL-~~   91 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP-----------TVS-AEINEWEAK-GQLRVKR--KKVGEEDL-LN   91 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS-----------SCC-HHHHHHHHT-TSCEEEC--SCCCGGGS-SS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC-----------CCC-HHHHHHHHc-CCcEEEE--CCCCHhHh-CC
Confidence            57999999999999999999999999999988662           244 345555543 3221110  01111122 36


Q ss_pred             ceEEeeccccccccccccccccceEEEecCCCC
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQAKIIVEAANGP  389 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p  389 (535)
                      +|++|-|+-...+|..-+..-+.++.|--+..|
T Consensus        92 adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p  124 (223)
T 3dfz_A           92 VFFIVVATNDQAVNKFVKQHIKNDQLVNMASSF  124 (223)
T ss_dssp             CSEEEECCCCTHHHHHHHHHSCTTCEEEC----
T ss_pred             CCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence            898887765555544333222233444444433

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.44  E-value=0.012  Score=59.53  Aligned_cols=68  Identities=21%  Similarity=0.223  Sum_probs=49.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~  356 (535)
                      .+|+|+|+|++|...++.|.+. +++|++|+|            .|.+.+.+..++.+.      ...+++  +++. .+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~~   64 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISD------------VREDRLREMKEKLGV------EKAYKDPHELIEDPN   64 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEEC------------SCHHHHHHHHHHHTC------SEEESSHHHHHHCTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEEC------------CCHHHHHHHHHHhCC------CceeCCHHHHhcCCC
Confidence            5899999999999999988874 789999875            556666666666542      122333  5554 47


Q ss_pred             ceEEeecccc
Q psy1913         357 VDILVPAAIE  366 (535)
Q Consensus       357 ~DILiPaA~~  366 (535)
                      +|+++-|+..
T Consensus        65 ~D~V~i~tp~   74 (344)
T 3ezy_A           65 VDAVLVCSST   74 (344)
T ss_dssp             CCEEEECSCG
T ss_pred             CCEEEEcCCC
Confidence            8988888754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.42  E-value=0.012  Score=55.65  Aligned_cols=105  Identities=12%  Similarity=0.098  Sum_probs=64.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      ++|+|.|+|.+|+.+|+.|.+.|..|+.|             |-|.+.+.++.+..+...-+..+.  +.+.+    -.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vi-------------d~~~~~~~~l~~~~~~~~i~gd~~--~~~~l~~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVII-------------NKDRELCEEFAKKLKATIIHGDGS--HKEILRDAEVSK   65 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEE-------------ESCHHHHHHHHHHSSSEEEESCTT--SHHHHHHHTCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEE-------------ECCHHHHHHHHHHcCCeEEEcCCC--CHHHHHhcCccc
Confidence            36999999999999999999999999984             366777766655433110000111  11222    247


Q ss_pred             ceEEeeccccccccc---cccccc-c-ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         357 VDILVPAAIEKVIRK---SNADKV-Q-AKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       357 ~DILiPaA~~~~It~---~na~~i-~-AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      ||++|-|......+.   ..+.++ . .++|+- +|.+   +..+.|++-|+-
T Consensus        66 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~-~~~~---~~~~~l~~~G~d  114 (218)
T 3l4b_C           66 NDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL-VNDP---GNMEIFKKMGIT  114 (218)
T ss_dssp             TCEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC-CCSG---GGHHHHHHHTCE
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE-EeCc---chHHHHHHCCCC
Confidence            999998876554432   333332 2 356654 4433   445677888874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.42  E-value=0.32  Score=52.33  Aligned_cols=201  Identities=17%  Similarity=0.185  Sum_probs=105.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CC-eEEEEecCCceEeCCCCCCCCHH----HHHHHHHHcCCcccC-----------
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RA-KCLAIVEHDTAIVPDKGTEINYK----DLHTYKITKGTIKGY-----------  342 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-Ga-kVVaVsD~~G~iynp~G~dLDi~----~L~~~~~~~g~v~~~-----------  342 (535)
                      -++|+|.|.|.||..+|..|++. |. .|++             .|+|.+    .+.++.+....+..|           
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~-------------~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~   84 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLG-------------FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKV   84 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEE-------------ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEE-------------EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhh
Confidence            36999999999999999999999 99 9988             334444    443333211111000           


Q ss_pred             --CCCccc-CC-CCccccceEEeeccccccccccc---------------ccccc--ceEEEecCCCC-CCHHHH-HHH-
Q psy1913         343 --PGTKSA-PT-DIMFDKVDILVPAAIEKVIRKSN---------------ADKVQ--AKIIVEAANGP-LTPAAH-AML-  398 (535)
Q Consensus       343 --~~a~~i-~~-ell~~~~DILiPaA~~~~It~~n---------------a~~i~--AkiIvEgAN~p-~T~eA~-~iL-  398 (535)
                        ++.-.. ++ +. -.+||++|-|..+..-...+               ++.++  +-+|.+..-.| +|.+.. .++ 
T Consensus        85 ~~~g~l~~ttd~ea-~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile  163 (478)
T 3g79_A           85 VKAGKFECTPDFSR-ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILE  163 (478)
T ss_dssp             HHTTCEEEESCGGG-GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHH
T ss_pred             cccCCeEEeCcHHH-HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHH
Confidence              111111 22 22 24899999998765421111               11121  34555665555 555554 467 


Q ss_pred             HhCC--------ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhh
Q psy1913         399 LKKN--------VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAM  470 (535)
Q Consensus       399 ~~rG--------I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  470 (535)
                      +++|        +...|.++ +-|..+.....-    ..+     --.-+++. .+.+..+.+.+   .+...-...+..
T Consensus       164 ~~~g~~~~~d~~v~~~Pe~~-~~G~a~~~~~~~----~~I-----v~G~~~~~-~~~~~~ly~~~---~~~~~~~~~~~~  229 (478)
T 3g79_A          164 EESGLKAGEDFALAHAPERV-MVGRLLKNIREH----DRI-----VGGIDEAS-TKRAVELYSPV---LTVGQVIPMSAT  229 (478)
T ss_dssp             HHHCCCBTTTBEEEECCCCC-CTTSHHHHHHHS----CEE-----EEESSHHH-HHHHHHHHGGG---CSSCCEEEEEHH
T ss_pred             HhcCCCcCCceeEEeCCccC-CccchhhhhcCC----cEE-----EEeCCHHH-HHHHHHHHhhh---ccCCeEEeCCHH
Confidence            4455        45667655 444432222110    001     01113322 13333333332   011111122233


Q ss_pred             HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy1913         471 YEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAA  516 (535)
Q Consensus       471 ~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AA  516 (535)
                      .++.++      ++..-+-........++..+|++.+  +|...-.
T Consensus       230 ~aE~~K------l~~N~~~a~~Ia~~nE~~~l~e~~G--iD~~~v~  267 (478)
T 3g79_A          230 AAEVTK------TAENTFRDLQIAAINQLALYCEAMG--INVYDVR  267 (478)
T ss_dssp             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHH
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHH
Confidence            334444      6677777788888899999999985  6765543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.35  E-value=0.021  Score=57.40  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~  356 (535)
                      .+|+|+|+|++|...++.|.+. +++|++|+|            .|.+.+.+..++.+       .. .+.  +++. .+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~   63 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVAD------------AFPAAAEAIAGAYG-------CE-VRTIDAIEAAAD   63 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEEC------------SSHHHHHHHHHHTT-------CE-ECCHHHHHHCTT
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEEC------------CCHHHHHHHHHHhC-------CC-cCCHHHHhcCCC
Confidence            6899999999999999999885 899999876            55666666666553       12 333  5554 37


Q ss_pred             ceEEeecccc
Q psy1913         357 VDILVPAAIE  366 (535)
Q Consensus       357 ~DILiPaA~~  366 (535)
                      +|+++-|...
T Consensus        64 ~D~V~i~tp~   73 (331)
T 4hkt_A           64 IDAVVICTPT   73 (331)
T ss_dssp             CCEEEECSCG
T ss_pred             CCEEEEeCCc
Confidence            8888877743

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.35  E-value=0.088  Score=52.24  Aligned_cols=131  Identities=16%  Similarity=0.115  Sum_probs=78.3

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD  328 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~  328 (535)
                      .-++.|+..+++.          .+.  +++++++.|.|.|.+|+.+|+.|.+.| +|+.             ++-+.+.
T Consensus       109 nTd~~G~~~~L~~----------~~~--~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v-------------~~r~~~~  162 (287)
T 1nvt_A          109 NTDGIGARMALEE----------EIG--RVKDKNIVIYGAGGAARAVAFELAKDN-NIII-------------ANRTVEK  162 (287)
T ss_dssp             CCHHHHHHHHHHH----------HHC--CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEE-------------ECSSHHH
T ss_pred             cCCHHHHHHHHHH----------hCC--CcCCCEEEEECchHHHHHHHHHHHHCC-CEEE-------------EECCHHH
Confidence            3488888877762          233  478999999999999999999999999 8776             2345555


Q ss_pred             HHHHHHHcCCcccCC---CCcccC-CCCccccceEEeeccccccccc---c---cccccc-ceEEEecCCCC-CCHHHHH
Q psy1913         329 LHTYKITKGTIKGYP---GTKSAP-TDIMFDKVDILVPAAIEKVIRK---S---NADKVQ-AKIIVEAANGP-LTPAAHA  396 (535)
Q Consensus       329 L~~~~~~~g~v~~~~---~a~~i~-~ell~~~~DILiPaA~~~~It~---~---na~~i~-AkiIvEgAN~p-~T~eA~~  396 (535)
                      +.+..++.+......   .....+ .+.+ .++||+|-|+.-.....   .   ....++ ..+|++-.-+| .|+-. +
T Consensus       163 ~~~l~~~~~~~~~~~~~~~~d~~~~~~~~-~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t~ll-~  240 (287)
T 1nvt_A          163 AEALAKEIAEKLNKKFGEEVKFSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLL-K  240 (287)
T ss_dssp             HHHHHHHHHHHHTCCHHHHEEEECTTCCC-TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHH-H
T ss_pred             HHHHHHHHhhhcccccceeEEEeeHHHhh-CCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccCHHH-H
Confidence            544443321000000   000001 1222 47899999987443211   0   123343 36788887667 46543 4


Q ss_pred             HHHhCCceeec
Q psy1913         397 MLLKKNVLIIP  407 (535)
Q Consensus       397 iL~~rGI~viP  407 (535)
                      ..+++|+.+++
T Consensus       241 ~a~~~G~~~~~  251 (287)
T 1nvt_A          241 EAKKVNAKTIN  251 (287)
T ss_dssp             HHHTTTCEEEC
T ss_pred             HHHHCCCEEeC
Confidence            45788987543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.35  E-value=0.015  Score=51.38  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      +++|.|.|.|++|+.+++.|.+.|++ |.|.|            .+.+.+.++.++.+.     .....+.  +.+ .++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~------------r~~~~~~~~a~~~~~-----~~~~~~~~~~~~-~~~   81 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAG------------RNIDHVRAFAEKYEY-----EYVLINDIDSLI-KNN   81 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEE------------SCHHHHHHHHHHHTC-----EEEECSCHHHHH-HTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEc------------CCHHHHHHHHHHhCC-----ceEeecCHHHHh-cCC
Confidence            78999999999999999999999999 55443            556666666655441     0111222  222 479


Q ss_pred             eEEeeccccc
Q psy1913         358 DILVPAAIEK  367 (535)
Q Consensus       358 DILiPaA~~~  367 (535)
                      |++|-|+...
T Consensus        82 Divi~at~~~   91 (144)
T 3oj0_A           82 DVIITATSSK   91 (144)
T ss_dssp             SEEEECSCCS
T ss_pred             CEEEEeCCCC
Confidence            9999998743

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.33  E-value=0.023  Score=56.86  Aligned_cols=104  Identities=14%  Similarity=0.226  Sum_probs=64.1

Q ss_pred             cEEEEEccccHHHHH-HHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913         281 KTYIVQGFGNVGFHA-ARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~-A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~  356 (535)
                      .+|+|+|+|++|... ++.|.+.+.++++|+|            .|.+.+.+..++.|..      ..++.  +++. .+
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d------------~~~~~~~~~~~~~g~~------~~~~~~~~~l~~~~   62 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMS------------TSAERGAAYATENGIG------KSVTSVEELVGDPD   62 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEEC------------SCHHHHHHHHHHTTCS------CCBSCHHHHHTCTT
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEEC------------CCHHHHHHHHHHcCCC------cccCCHHHHhcCCC
Confidence            379999999999987 7777778899999876            4556666666654421      12333  5554 47


Q ss_pred             ceEEeecccccccccccccc-cc--ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      +|+++-|+.... +.+.+.. ++  ..+++|-   |+  | .++.++   .+++|+.+.
T Consensus        63 ~D~V~i~tp~~~-h~~~~~~al~~Gk~v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~  117 (332)
T 2glx_A           63 VDAVYVSTTNEL-HREQTLAAIRAGKHVLCEK---PLAMTLEDAREMVVAAREAGVVLG  117 (332)
T ss_dssp             CCEEEECSCGGG-HHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCEEEEeCChhH-hHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            999998886433 3333322 22  2467763   42  2 344443   355676554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.33  E-value=0.035  Score=59.13  Aligned_cols=202  Identities=14%  Similarity=0.166  Sum_probs=109.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc----------CCCCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG----------YPGTKSA  348 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~----------~~~a~~i  348 (535)
                      +-++|+|.|.|.||..+|..|++ |..|++             .|+|.+.+.++.+..-.+..          ..+.+..
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~-------------~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~t  100 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVA-------------LDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRAT  100 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEE-------------ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEE-------------EecCHHHhhHHhccCCccccccHHHHHhhccCCeEEE
Confidence            44699999999999999999998 999998             55777777665532111100          0011111


Q ss_pred             CC-CCccccceEEeeccccccccc--------------ccccccc--ceEEEecCCCC-CCHHHHHHHHhCCceeecccc
Q psy1913         349 PT-DIMFDKVDILVPAAIEKVIRK--------------SNADKVQ--AKIIVEAANGP-LTPAAHAMLLKKNVLIIPDIF  410 (535)
Q Consensus       349 ~~-ell~~~~DILiPaA~~~~It~--------------~na~~i~--AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD~l  410 (535)
                      +. +-.-.+||++|-|..++.-..              .-++ ++  +-+|.+..-.| +|.+..+.|.+.++.+.|.++
T Consensus       101 td~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~~sPe~~  179 (432)
T 3pid_A          101 TDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVIFSPEFL  179 (432)
T ss_dssp             SCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEEECCCCC
T ss_pred             cCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEeecCccC
Confidence            11 111248999999977553111              1112 32  34555666666 567777888889999999876


Q ss_pred             ccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhh-hhhhhh-hcchhhHHHhhcccchHHHHHHHH
Q psy1913         411 ANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDT-FNKKIR-IQKSAMYEDRISNATEKDIVQSSL  488 (535)
Q Consensus       411 aNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~-~~~~~~-~~~~~~~~~~i~g~~e~d~V~~~L  488 (535)
                       +.|+.+...+.-    ..+--|     -+.+....    +.+.+... ++.... ...+...++.++      ++..-+
T Consensus       180 -~~G~A~~~~l~p----~rIvvG-----~~~~~~~~----~~~ll~~~~~~~~~~v~~~~~~~AE~~K------l~~N~~  239 (432)
T 3pid_A          180 -REGRALYDNLHP----SRIVIG-----ERSARAER----FADLLKEGAIKQDIPTLFTDSTEAEAIK------LFANTY  239 (432)
T ss_dssp             -CTTSHHHHHHSC----SCEEES-----SCSHHHHH----HHHHHHHHCSSSSCCEEECCHHHHHHHH------HHHHHH
T ss_pred             -CcchhhhcccCC----ceEEec-----CCHHHHHH----HHHHHHhhhccCCCeEEecCccHHHHHH------HHHHHH
Confidence             555543332210    001111     12222111    11111110 000000 011223333333      566667


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Q psy1913         489 THSMQRAGRDILEYAEKSDNKLDLRNAAY  517 (535)
Q Consensus       489 ~~~m~~a~~~v~~~a~~~~~~~~lR~AAy  517 (535)
                      -......+.++..+|++.+  +|..+-.-
T Consensus       240 ~a~~Ia~~nEl~~lae~~G--iD~~~v~~  266 (432)
T 3pid_A          240 LALRVAYFNELDSYAESQG--LNSKQIIE  266 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcC--CCHHHHHH
Confidence            7777788889999999885  67655433

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.26  E-value=0.017  Score=58.31  Aligned_cols=67  Identities=13%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~  356 (535)
                      .+|+|+|+|++|...++.|.+. +++|++|+|            .|.+.+.+..++.|       ...++.  +++. .+
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~a~~~g-------~~~~~~~~~~l~~~~   65 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIAD------------PFIEGAQRLAEANG-------AEAVASPDEVFARDD   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEEC------------SSHHHHHHHHHTTT-------CEEESSHHHHTTCSC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEEC------------CCHHHHHHHHHHcC-------CceeCCHHHHhcCCC
Confidence            6899999999999999999885 889999875            55666666666544       222333  5554 57


Q ss_pred             ceEEeecccc
Q psy1913         357 VDILVPAAIE  366 (535)
Q Consensus       357 ~DILiPaA~~  366 (535)
                      +|+++-|...
T Consensus        66 ~D~V~i~tp~   75 (344)
T 3euw_A           66 IDGIVIGSPT   75 (344)
T ss_dssp             CCEEEECSCG
T ss_pred             CCEEEEeCCc
Confidence            8988888743

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.25  E-value=0.029  Score=54.16  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=67.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC----eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA----KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga----kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++|.|.|+|++|..+++.|.+.|.    .|+.             .|.+.+.+.+..++.|       ....+.  +.+ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~-------------~~r~~~~~~~~~~~~g-------~~~~~~~~e~~-   61 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIIC-------------SDLNTANLKNASEKYG-------LTTTTDNNEVA-   61 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEE-------------ECSCHHHHHHHHHHHC-------CEECSCHHHHH-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEE-------------EeCCHHHHHHHHHHhC-------CEEeCChHHHH-
Confidence            589999999999999999999998    8776             4466777777665543       222222  333 


Q ss_pred             ccceEEeecccccccccccccc----cc-ceEEEecCCCCCCHHHHHHHHh--CCceeeccccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNADK----VQ-AKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIFA  411 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~la  411 (535)
                      .+|||+|-|.....+. +-+..    ++ -++|+--+++-......+.|..  +-+.+.|+.-+
T Consensus        62 ~~aDvVilav~~~~~~-~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~  124 (247)
T 3gt0_A           62 KNADILILSIKPDLYA-SIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPA  124 (247)
T ss_dssp             HHCSEEEECSCTTTHH-HHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGG
T ss_pred             HhCCEEEEEeCHHHHH-HHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHH
Confidence            4799999998544332 22222    33 3577765655443444455532  23455675433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.21  E-value=0.026  Score=56.81  Aligned_cols=105  Identities=10%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCC--HHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEIN--YKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLD--i~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      -++|+|+|+|++|..+|+.|.+.|. .|+.             .|.+  .+.+... .+.|       ....+.  +++ 
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~-------------~dr~~~~~~~~~~-~~~g-------~~~~~~~~e~~-   81 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAA-------------YDAASAESWRPRA-EELG-------VSCKASVAEVA-   81 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEE-------------ECSSCHHHHHHHH-HHTT-------CEECSCHHHHH-
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEE-------------EcCCCCHHHHHHH-HHCC-------CEEeCCHHHHH-
Confidence            4699999999999999999999999 7776             3343  2333333 3332       222222  333 


Q ss_pred             ccceEEeecccccccccccccc----c-cceEEEecCCCC--CCHHHHHHHHhC--Cceeec
Q psy1913         355 DKVDILVPAAIEKVIRKSNADK----V-QAKIIVEAANGP--LTPAAHAMLLKK--NVLIIP  407 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~----i-~AkiIvEgAN~p--~T~eA~~iL~~r--GI~viP  407 (535)
                      .+|||+|-|........ .+..    + .-++|+......  ++.+..+.+.++  |+.++.
T Consensus        82 ~~aDvVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd  142 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA  142 (312)
T ss_dssp             HHCSEEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             hcCCEEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence            47999999987655432 2222    3 235777665544  344555667788  888764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.21  E-value=0.019  Score=47.68  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=27.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC-CeEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR-AKCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G-akVVa  308 (535)
                      .+++|+|.|.|.+|+.+++.|.+.| .+|++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~   34 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTV   34 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEE
Confidence            4689999999999999999999999 78776

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.20  E-value=0.051  Score=54.81  Aligned_cols=109  Identities=15%  Similarity=0.208  Sum_probs=69.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ..++|.|.|+|++|+..++.|.+. |.+-|.|.            |.+.+.+.+..++.+.     .....+.  +++ .
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~------------dr~~~~~~~l~~~~~~-----~~~~~~~~~e~v-~  195 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIW------------NRTKENAEKFADTVQG-----EVRVCSSVQEAV-A  195 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEE------------CSSHHHHHHHHHHSSS-----CCEECSSHHHHH-T
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEE------------cCCHHHHHHHHHHhhC-----CeEEeCCHHHHH-h
Confidence            578999999999999999999875 87444433            3556777766665431     1122222  333 3


Q ss_pred             cceEEeecccc--cccccccccccc--ceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913         356 KVDILVPAAIE--KVIRKSNADKVQ--AKIIVEAANGPLTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~--~~It~~na~~i~--AkiIvEgAN~p~T~eA~~iL~~rGI~viPD  408 (535)
                      +|||++-|...  .++..   +.++  +-++.-+.+.|-..|..+.+.++|+.|+-+
T Consensus       196 ~aDiVi~atp~~~~v~~~---~~l~~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD~  249 (312)
T 2i99_A          196 GADVIITVTLATEPILFG---EWVKPGAHINAVGASRPDWRELDDELMKEAVLYVDS  249 (312)
T ss_dssp             TCSEEEECCCCSSCCBCG---GGSCTTCEEEECCCCSTTCCSBCHHHHHHSEEEESC
T ss_pred             cCCEEEEEeCCCCcccCH---HHcCCCcEEEeCCCCCCCceeccHHHHhcCEEEECC
Confidence            68999988752  22222   2333  344555788886666666778889876644

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.18  E-value=0.037  Score=56.12  Aligned_cols=98  Identities=12%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++        ||+......             +      ...+. +++ .
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~--------~d~~~~~~~-------------~------~~~~l~ell-~  192 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGMRVVY--------HARTPKPLP-------------Y------PFLSLEELL-K  192 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSCCSSS-------------S------CBCCHHHHH-H
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCCEEEE--------ECCCCcccc-------------c------ccCCHHHHH-h
Confidence            58999999999999999999999999999876        333320011             0      00111 333 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TP-AAHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~-eA~~iL~~rGI  403 (535)
                      .|||++-|..     .+.|+.+....++ -.+++.-+.+++ .. +..+.|. ..|
T Consensus       193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i  247 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHL  247 (311)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred             hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence            7899998854     3455555555664 357888888874 43 3445665 443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.15  E-value=0.024  Score=55.63  Aligned_cols=102  Identities=12%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|..+|+.|.+.|..|+.             .|.+.+.+.+..+. |       ....+.  +++ .+||
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~-------------~~~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D   58 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLII-------------YDVFPDACKEFQDA-G-------EQVVSSPADVA-EKAD   58 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEE-------------ECSSTHHHHHHHTT-T-------CEECSSHHHHH-HHCS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHc-C-------CeecCCHHHHH-hcCC
Confidence            3699999999999999999999998775             22444555444332 2       222222  333 3799


Q ss_pred             EEeecccccccccccc-------cccc-ceEEEecCCCCCCH---HHHHHHHhCCcee
Q psy1913         359 ILVPAAIEKVIRKSNA-------DKVQ-AKIIVEAANGPLTP---AAHAMLLKKNVLI  405 (535)
Q Consensus       359 ILiPaA~~~~It~~na-------~~i~-AkiIvEgAN~p~T~---eA~~iL~~rGI~v  405 (535)
                      +++-|........+-+       +.++ -++|+. .++-...   +..+.+.++|+.+
T Consensus        59 vvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g~~~  115 (296)
T 2gf2_A           59 RIITMLPTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMGAVF  115 (296)
T ss_dssp             EEEECCSSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEEeCCCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence            9999975332222211       2232 368888 5543222   2234566777654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=95.06  E-value=0.11  Score=52.16  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      +.|+..+++          ..|+  +++++++.|.|.|.+|+.++..|.+.|++-|.|.++            +.+...+
T Consensus       106 ~~G~~~~L~----------~~~~--~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nR------------t~~ka~~  161 (282)
T 3fbt_A          106 YIGFGKMLS----------KFRV--EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTR------------NPEKTSE  161 (282)
T ss_dssp             HHHHHHHHH----------HTTC--CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEES------------CHHHHHH
T ss_pred             HHHHHHHHH----------HcCC--CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC------------CHHHHHH
Confidence            677776665          2354  478999999999999999999999999944444433            3444444


Q ss_pred             HHHHcCCcccCCCCcccCC--CCccccceEEeeccccccccc---c--cccccc-ceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913         332 YKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRK---S--NADKVQ-AKIIVEAANGP-LTPAAHAMLLKKN  402 (535)
Q Consensus       332 ~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~---~--na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rG  402 (535)
                      +.++..       ...++.  + +  ++||+|-|+.-+.-..   .  ....++ ..+|++-.=+| -|+=... -+++|
T Consensus       162 La~~~~-------~~~~~~l~~-l--~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~-A~~~G  230 (282)
T 3fbt_A          162 IYGEFK-------VISYDELSN-L--KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLFLKY-ARESG  230 (282)
T ss_dssp             HCTTSE-------EEEHHHHTT-C--CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCHHHHH-HHHTT
T ss_pred             HHHhcC-------cccHHHHHh-c--cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCHHHHH-HHHCc
Confidence            332211       111122  3 2  8999998875443221   1  112232 47899999888 5765443 36788


Q ss_pred             ceeec
Q psy1913         403 VLIIP  407 (535)
Q Consensus       403 I~viP  407 (535)
                      +.+++
T Consensus       231 ~~~~~  235 (282)
T 3fbt_A          231 VKAVN  235 (282)
T ss_dssp             CEEEC
T ss_pred             CeEeC
Confidence            76653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.05  E-value=0.24  Score=53.02  Aligned_cols=40  Identities=13%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      ++|+|.|.|.||..+|..|++.  |..|++             .|.|.+.+..+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~-------------~D~~~~~v~~l~   51 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTV-------------VDMNTAKIAEWN   51 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEE-------------ECSCHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEE-------------EECCHHHHHHHH
Confidence            5899999999999999999998  789988             446666665543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.04  E-value=0.047  Score=53.76  Aligned_cols=99  Identities=13%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      .+|+|.|+|++|+.+++.+.+.+..||++.|.++.     .             ..       +....+.  +++  ++|
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~-----~-------------~~-------gv~v~~dl~~l~--~~D   56 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK-----A-------------TT-------PYQQYQHIADVK--GAD   56 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--------------------C-------CSCBCSCTTTCT--TCS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc-----c-------------cC-------CCceeCCHHHHh--CCC
Confidence            68999999999999999999875599998876532     0             01       1222233  444  899


Q ss_pred             EEeecccccccccccccccc--ceEEEecCCCCCCHHHHHHHH----hCCceeecccc
Q psy1913         359 ILVPAAIEKVIRKSNADKVQ--AKIIVEAANGPLTPAAHAMLL----KKNVLIIPDIF  410 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i~--AkiIvEgAN~p~T~eA~~iL~----~rGI~viPD~l  410 (535)
                      |+|-++.++... +|+. ++  ..+|++-. | .+++-.+.|.    +.+|++.|-+.
T Consensus        57 VvIDft~p~a~~-~~~~-l~~g~~vVigTT-G-~s~e~~~~l~~aa~~~~v~~a~N~S  110 (243)
T 3qy9_A           57 VAIDFSNPNLLF-PLLD-EDFHLPLVVATT-G-EKEKLLNKLDELSQNMPVFFSANMS  110 (243)
T ss_dssp             EEEECSCHHHHH-HHHT-SCCCCCEEECCC-S-SHHHHHHHHHHHTTTSEEEECSSCC
T ss_pred             EEEEeCChHHHH-HHHH-HhcCCceEeCCC-C-CCHHHHHHHHHHHhcCCEEEECCcc
Confidence            999888766554 4554 54  45666433 3 4554333332    34566666554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.02  E-value=0.046  Score=55.46  Aligned_cols=108  Identities=10%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~  355 (535)
                      ..+|+|+|+|++|...++.|.+. +++|++|+|            .|.+.+.+..++.|.       ...++  +++ ..
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d------------~~~~~~~~~~~~~g~-------~~~~~~~~~l~~~   65 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYS------------RTEDKREKFGKRYNC-------AGDATMEALLARE   65 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEC------------SSHHHHHHHHHHHTC-------CCCSSHHHHHHCS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEEC------------CCHHHHHHHHHHcCC-------CCcCCHHHHhcCC
Confidence            46999999999999999999886 899999876            556666666665531       11233  566 35


Q ss_pred             cceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceeec
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLIIP  407 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~viP  407 (535)
                      ++|+++-|... ..+.+.+...   ...++||--=.....+++++   .+++|+.+..
T Consensus        66 ~~D~V~i~tp~-~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v  122 (354)
T 3db2_A           66 DVEMVIITVPN-DKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLC  122 (354)
T ss_dssp             SCCEEEECSCT-TSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred             CCCEEEEeCCh-HHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            78998887754 3344433322   23577774111112344433   4556665543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=94.99  E-value=0.024  Score=57.62  Aligned_cols=105  Identities=13%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +-.+|+|+|+|++|...++.|.+.  +++|++|+|            .|.+.+.+..++.|       ....++  +++.
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d------------~~~~~~~~~~~~~~-------~~~~~~~~~ll~   72 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCD------------IDPAALKAAVERTG-------ARGHASLTDMLA   72 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEEC------------SSHHHHHHHHHHHC-------CEEESCHHHHHH
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEc------------CCHHHHHHHHHHcC-------CceeCCHHHHhc
Confidence            347999999999999989999876  899999875            55677777666654       223334  5664


Q ss_pred             -ccceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         355 -DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 -~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                       .++|+++-|.... .+.+.+...   ...+++|=   |+  | .++.++   .+++|+.+.
T Consensus        73 ~~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EK---P~a~~~~~~~~l~~~a~~~g~~~~  130 (354)
T 3q2i_A           73 QTDADIVILTTPSG-LHPTQSIECSEAGFHVMTEK---PMATRWEDGLEMVKAADKAKKHLF  130 (354)
T ss_dssp             HCCCSEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCEEEECCCcH-HHHHHHHHHHHCCCCEEEeC---CCcCCHHHHHHHHHHHHHhCCeEE
Confidence             5789988877543 343333222   23667763   42  2 344433   455666554

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.93  E-value=0.012  Score=62.64  Aligned_cols=116  Identities=8%  Similarity=0.049  Sum_probs=66.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-----CCc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-----DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-----ell  353 (535)
                      ++++|.|.|.|.+|+++++.|.+.|++|+. +|            -+.+.+.+..+..+.+..+. . .+++     +++
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v-~~------------R~~~~a~~la~~~~~~~~~~-~-Dv~d~~~l~~~l   66 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTV-AC------------RTLESAKKLSAGVQHSTPIS-L-DVNDDAALDAEV   66 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEE-EE------------SSHHHHHHTTTTCTTEEEEE-C-CTTCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEE-EE------------CCHHHHHHHHHhcCCceEEE-e-ecCCHHHHHHHH
Confidence            468999999999999999999999999665 33            44555544332222110000 0 0111     223


Q ss_pred             cccceEEeecccccccccccc-cccc--ceEEEecCCCCCCHHHHHHHHhCCceeeccccc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNA-DKVQ--AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFA  411 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na-~~i~--AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~la  411 (535)
                       .++|++|-|+.... +...+ ..+.  ..++.+....|.+.+..+..+++|+.+++.+-.
T Consensus        67 -~~~DvVIn~a~~~~-~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~  125 (450)
T 1ff9_A           67 -AKHDLVISLIPYTF-HATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGL  125 (450)
T ss_dssp             -TTSSEEEECCC--C-HHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBB
T ss_pred             -cCCcEEEECCcccc-chHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCC
Confidence             37999999996432 22111 1233  356666443443334445567899988766543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.87  E-value=0.054  Score=55.18  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCCcEEEEEccccHHH-HHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         278 MENKTYIVQGFGNVGF-HAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~-~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      ++-.+|+|+|+|++|. ..++.|.+. +++|++|+|            .|.+...+..++.|       ...++.  +++
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~a~~~g-------~~~~~~~~~ll   85 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIAS------------RRWDRAKRFTERFG-------GEPVEGYPALL   85 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEE------------SSHHHHHHHHHHHC-------SEEEESHHHHH
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEc------------CCHHHHHHHHHHcC-------CCCcCCHHHHh
Confidence            4557999999999998 678888776 899999876            45566666666553       222233  566


Q ss_pred             c-ccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceeecc
Q psy1913         354 F-DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLIIPD  408 (535)
Q Consensus       354 ~-~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~viPD  408 (535)
                      . .++|+++-|... ..+.+.+...   ...++||=-=.....+++++   .+++|+.+...
T Consensus        86 ~~~~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~  146 (350)
T 3rc1_A           86 ERDDVDAVYVPLPA-VLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMEN  146 (350)
T ss_dssp             TCTTCSEEEECCCG-GGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCCEEEECCCc-HHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence            4 478999887753 3444443332   23677874111122345443   45677766543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.84  E-value=0.23  Score=52.19  Aligned_cols=41  Identities=12%  Similarity=0.211  Sum_probs=33.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      ++|+|.|.|.||..+|..|++.|..|++             .|.|.+.+..+.+
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~-------------~d~~~~~~~~l~~   41 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIG-------------VDVSSTKIDLINQ   41 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHhC
Confidence            3799999999999999999999999888             4466666655543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.80  E-value=0.033  Score=55.31  Aligned_cols=109  Identities=18%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCC---eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRA---KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~Ga---kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .++|.|+|+|++|..+++.|.+.|.   .|+.             .|.+.+.+.+..++.|       ....+.  +.+ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v-------------~dr~~~~~~~l~~~~g-------i~~~~~~~~~~-   61 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICV-------------TNRSLDKLDFFKEKCG-------VHTTQDNRQGA-   61 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEE-------------ECSSSHHHHHHHHTTC-------CEEESCHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEE-------------EeCCHHHHHHHHHHcC-------CEEeCChHHHH-
Confidence            4789999999999999999999997   6665             3355566666665432       222222  333 


Q ss_pred             ccceEEeecccccccccccccc-----ccce-EEEecCCCCCCHHHHHHHHh--CCceeecccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNADK-----VQAK-IIVEAANGPLTPAAHAMLLK--KNVLIIPDIF  410 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~-----i~Ak-iIvEgAN~p~T~eA~~iL~~--rGI~viPD~l  410 (535)
                      .+|||+|.|.....+. +-...     ++.+ +|+--+++-......+.|..  +=|.+.|-.-
T Consensus        62 ~~aDvVilav~p~~~~-~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p  124 (280)
T 3tri_A           62 LNADVVVLAVKPHQIK-MVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTP  124 (280)
T ss_dssp             SSCSEEEECSCGGGHH-HHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGG
T ss_pred             hcCCeEEEEeCHHHHH-HHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCCh
Confidence            4799999998665443 22222     3444 77776665544444455542  2244556543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.78  E-value=0.056  Score=55.04  Aligned_cols=54  Identities=28%  Similarity=0.341  Sum_probs=43.5

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +-.+.|.+|+...++          +.+.  +++|++++|.|.|+ ||..+|.+|...|+.|. |+++
T Consensus       143 ~~~PcTp~gv~~lL~----------~~~i--~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~~~  197 (300)
T 4a26_A          143 PFTPCTAKGVIVLLK----------RCGI--EMAGKRAVVLGRSNIVGAPVAALLMKENATVT-IVHS  197 (300)
T ss_dssp             SCCCHHHHHHHHHHH----------HHTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred             CCCCCCHHHHHHHHH----------HcCC--CCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence            346889999876666          3454  58999999999988 89999999999999865 4544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=94.77  E-value=0.031  Score=57.22  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=68.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.|++|.|.|+|++|+.+|+.|...|++|++        ||+..   +.. +    ++ .       .+..+.  +++ 
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~d~~~---~~~-~----~~-~-------~~~~~~l~ell-  197 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT--------YDIFR---NPE-L----EK-K-------GYYVDSLDDLY-  197 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC---CHH-H----HH-T-------TCBCSCHHHHH-
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEE--------ECCCc---chh-H----Hh-h-------CeecCCHHHHH-
Confidence            57899999999999999999999999999987        44443   111 1    11 1       111222  444 


Q ss_pred             ccceEEeecccc-----cccccccccccc-ceEEEecCCCC-CC-HHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGP-LT-PAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p-~T-~eA~~iL~~rGI~  404 (535)
                      ..|||++-|...     +.|+.+-...++ -.+++.-+-++ +. ....+.|.+..|.
T Consensus       198 ~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             HHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             hhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce
Confidence            489999998763     334444444554 36777777777 44 3445678877665

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.76  E-value=0.14  Score=52.19  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++          ..|.  +++|+++.|.|.|.+|+.++..|.+.|++-|.|.+++       +  =+.+...
T Consensus       137 D~~Gf~~~L~----------~~~~--~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~-------~--~~~~~a~  195 (315)
T 3tnl_A          137 DGTGYMRALK----------EAGH--DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK-------D--DFYANAE  195 (315)
T ss_dssp             HHHHHHHHHH----------HTTC--CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-------S--TTHHHHH
T ss_pred             CHHHHHHHHH----------HcCC--CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC-------C--chHHHHH
Confidence            4778776665          2344  4799999999999999999999999999444444432       1  1145555


Q ss_pred             HHHHHcCCcccCCCCcc--cCC--CCc--cccceEEeeccccccccc---c---cccccc-ceEEEecCCCC-CCHHHHH
Q psy1913         331 TYKITKGTIKGYPGTKS--APT--DIM--FDKVDILVPAAIEKVIRK---S---NADKVQ-AKIIVEAANGP-LTPAAHA  396 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~--i~~--ell--~~~~DILiPaA~~~~It~---~---na~~i~-AkiIvEgAN~p-~T~eA~~  396 (535)
                      +..++.+...+. ....  ++.  ++-  -.++||+|-|+.-+.-..   .   ....++ ..+|++-.=+| -|+=...
T Consensus       196 ~la~~~~~~~~~-~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~ll~~  274 (315)
T 3tnl_A          196 KTVEKINSKTDC-KAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEI  274 (315)
T ss_dssp             HHHHHHHHHSSC-EEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHHHHH
T ss_pred             HHHHHhhhhcCC-ceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHHHHH
Confidence            544332110000 0111  111  111  137899998775332211   1   222343 46889999998 5775443


Q ss_pred             HHHhCCceee
Q psy1913         397 MLLKKNVLII  406 (535)
Q Consensus       397 iL~~rGI~vi  406 (535)
                       -+++|+.++
T Consensus       275 -A~~~G~~~~  283 (315)
T 3tnl_A          275 -AEEQGCQTL  283 (315)
T ss_dssp             -HHHTTCEEE
T ss_pred             -HHHCCCeEe
Confidence             367887654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.75  E-value=0.025  Score=56.37  Aligned_cols=104  Identities=11%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|..+|+.|.+.|..|+. .|            .+.+.+.+..+ .|       ....+.  +.+ .+||
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~-~~------------~~~~~~~~~~~-~g-------~~~~~~~~~~~-~~~D   88 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTV-WN------------RTAEKCDLFIQ-EG-------ARLGRTPAEVV-STCD   88 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEE-EC------------SSGGGGHHHHH-TT-------CEECSCHHHHH-HHCS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEE-Ee------------CCHHHHHHHHH-cC-------CEEcCCHHHHH-hcCC
Confidence            6899999999999999999999998765 22            33333333332 22       122222  333 3799


Q ss_pred             EEeecccccccccccc-------cccc-ceEEEecCCCCC--CHHHHHHHHhCCceee
Q psy1913         359 ILVPAAIEKVIRKSNA-------DKVQ-AKIIVEAANGPL--TPAAHAMLLKKNVLII  406 (535)
Q Consensus       359 ILiPaA~~~~It~~na-------~~i~-AkiIvEgAN~p~--T~eA~~iL~~rGI~vi  406 (535)
                      +++-|........+-+       +.++ -++|+..+|...  ..+..+.+.++|+.++
T Consensus        89 vVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v  146 (316)
T 2uyy_A           89 ITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL  146 (316)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9999987332222211       2232 368888888642  2334456667888776

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=94.74  E-value=0.17  Score=50.58  Aligned_cols=128  Identities=12%  Similarity=-0.003  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      +.|...+++.          .+.  +++++++.|.|.|.+|+.++..|.+.|++-|.|.+            -+.++..+
T Consensus       111 ~~G~~~~l~~----------~~~--~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~------------R~~~~a~~  166 (283)
T 3jyo_A          111 VSGFGRGMEE----------GLP--NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVAD------------LDTSRAQA  166 (283)
T ss_dssp             HHHHHHHHHH----------HCT--TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEEC------------SSHHHHHH
T ss_pred             HHHHHHHHHH----------hCc--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEE------------CCHHHHHH
Confidence            6777766652          232  47899999999999999999999999995344443            34455444


Q ss_pred             HHHHcCCcccCCC--CcccCC-CCc--cccceEEeeccccccccc----ccccccc-ceEEEecCCCC-CCHHHHHHHHh
Q psy1913         332 YKITKGTIKGYPG--TKSAPT-DIM--FDKVDILVPAAIEKVIRK----SNADKVQ-AKIIVEAANGP-LTPAAHAMLLK  400 (535)
Q Consensus       332 ~~~~~g~v~~~~~--a~~i~~-ell--~~~~DILiPaA~~~~It~----~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~  400 (535)
                      ..++.+..  +++  ...++. ++-  -.++||+|-|+.-+.-..    -....++ ..+|++-.=+| -|+-... -++
T Consensus       167 la~~~~~~--~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll~~-A~~  243 (283)
T 3jyo_A          167 LADVINNA--VGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKA-ARA  243 (283)
T ss_dssp             HHHHHHHH--HTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSCHHHHH-HHH
T ss_pred             HHHHHHhh--cCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCCHHHHH-HHH
Confidence            43332100  011  111221 221  137899998875332211    1122332 46889999998 5775443 356


Q ss_pred             CCceee
Q psy1913         401 KNVLII  406 (535)
Q Consensus       401 rGI~vi  406 (535)
                      +|+.++
T Consensus       244 ~G~~~~  249 (283)
T 3jyo_A          244 LGCETL  249 (283)
T ss_dssp             HTCCEE
T ss_pred             CcCeEe
Confidence            787654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.73  E-value=0.033  Score=58.79  Aligned_cols=105  Identities=18%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~  355 (535)
                      +.+|+|.|||.+|+.+++.|.+.|..|++             -|.|.+.+..+.+. |.-.-|-+++  +.++|    -.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvv-------------Id~d~~~v~~~~~~-g~~vi~GDat--~~~~L~~agi~   67 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVV-------------LDHDPDHIETLRKF-GMKVFYGDAT--RMDLLESAGAA   67 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEE-------------EECCHHHHHHHHHT-TCCCEESCTT--CHHHHHHTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEE-------------EECCHHHHHHHHhC-CCeEEEcCCC--CHHHHHhcCCC
Confidence            45799999999999999999999999998             44788887766543 3111111111  11333    24


Q ss_pred             cceEEeeccccccccc---ccccccc--ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         356 KVDILVPAAIEKVIRK---SNADKVQ--AKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~~~It~---~na~~i~--AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      +||++|-|.-....+.   ..+.++.  .++|+-+.|    ++....|.+-|+.
T Consensus        68 ~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~----~~~~~~L~~~Gad  117 (413)
T 3l9w_A           68 KAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD----VDHYIRLRQAGVE  117 (413)
T ss_dssp             TCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS----HHHHHHHHHTTCS
T ss_pred             ccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC----HHHHHHHHHCCCC
Confidence            7899998886544332   3333332  478876654    5666788999974

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.72  E-value=0.079  Score=53.59  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .-++|.|+|+|++|..+|+.|.+.|.  +|++             .|.+.+.+....+ .|.+.     ...+.  ++.-
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~-------------~dr~~~~~~~a~~-~G~~~-----~~~~~~~~~~~   92 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-------------YDINPESISKAVD-LGIID-----EGTTSIAKVED   92 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEE-------------ECSCHHHHHHHHH-TTSCS-----EEESCTTGGGG
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEE-------------EECCHHHHHHHHH-CCCcc-----hhcCCHHHHhh
Confidence            34799999999999999999999998  8887             5566676655543 33211     11222  3134


Q ss_pred             ccceEEeecccccccccccccc----cc-ceEEEecCCCC
Q psy1913         355 DKVDILVPAAIEKVIRKSNADK----VQ-AKIIVEAANGP  389 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~p  389 (535)
                      .+||++|-|.....+. +-+..    ++ -.+|+.-+...
T Consensus        93 ~~aDvVilavp~~~~~-~vl~~l~~~l~~~~iv~d~~Svk  131 (314)
T 3ggo_A           93 FSPDFVMLSSPVRTFR-EIAKKLSYILSEDATVTDQGSVK  131 (314)
T ss_dssp             GCCSEEEECSCGGGHH-HHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ccCCEEEEeCCHHHHH-HHHHHHhhccCCCcEEEECCCCc
Confidence            5899999998876543 22222    32 25777765443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.71  E-value=0.047  Score=58.30  Aligned_cols=126  Identities=18%  Similarity=0.244  Sum_probs=77.7

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC--eEEEEec----CCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVE----HDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG  344 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD----~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~  344 (535)
                      ..|.  ++++++|+|.|.|..|..+++.|.+.|+  +=|.|.|    ++|.++..+.  +  +.|..++........  .
T Consensus       179 ~~g~--~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~--~--~~L~~~~~~~a~~~~--~  250 (439)
T 2dvm_A          179 VVGK--KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLD--L--EKLFPYRGWLLKKTN--G  250 (439)
T ss_dssp             HHTC--CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSC--H--HHHSTTCHHHHTTSC--T
T ss_pred             HhCC--CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccc--h--hHHHHHHHHHhhccc--c
Confidence            4564  4789999999999999999999999998  5455677    8887665422  2  223222221110000  0


Q ss_pred             CcccCC--CCccccceEEeecccc--cccccccccccc-ceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         345 TKSAPT--DIMFDKVDILVPAAIE--KVIRKSNADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       345 a~~i~~--ell~~~~DILiPaA~~--~~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      ......  +.+ .++||||=|+..  +.++++....+. -.+|..-+|-.-|+-.++. +++|..++
T Consensus       251 ~~~~~~L~e~l-~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A-~~~G~~iv  315 (439)
T 2dvm_A          251 ENIEGGPQEAL-KDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEA-KKAGARIV  315 (439)
T ss_dssp             TCCCSSHHHHH-TTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHH-HHHTCSEE
T ss_pred             ccccccHHHHh-ccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHH-HHcCCeEE
Confidence            000111  222 368999999997  888876666564 3689999775445444343 33476554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.67  E-value=0.037  Score=58.56  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-----C-------
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-----G-------  344 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-----~-------  344 (535)
                      .+.+.+|+|.|+|.+|..+|+.+...|++|++             .|.+...+....+-...+...+     .       
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v-------------~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~y  253 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSA-------------TDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGY  253 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSTTHHHHHHHTTCEECCCCC------------
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-------------EcCCHHHHHHHHHcCCceeecccccccccccccch
Confidence            45789999999999999999999999999876             4444445444433211111100     0       


Q ss_pred             CcccCCC-------Cc---cccceEEeeccc------cccccccccccccc-eEEEecC-----CCCCCHHHHHHHHhCC
Q psy1913         345 TKSAPTD-------IM---FDKVDILVPAAI------EKVIRKSNADKVQA-KIIVEAA-----NGPLTPAAHAMLLKKN  402 (535)
Q Consensus       345 a~~i~~e-------ll---~~~~DILiPaA~------~~~It~~na~~i~A-kiIvEgA-----N~p~T~eA~~iL~~rG  402 (535)
                      +..++++       .+   -.++||+|-|++      ...||.+-+..++. .+|+.-|     |-.+|. ....+..+|
T Consensus       254 a~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~-~~~~~~~~G  332 (405)
T 4dio_A          254 AKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAE-AGKVTEVGG  332 (405)
T ss_dssp             -----CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCC-TTEEEEETT
T ss_pred             hhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccC-CCCeEEECC
Confidence            0001110       11   258999998864      34578888887763 6777665     333441 122234566


Q ss_pred             ceee
Q psy1913         403 VLII  406 (535)
Q Consensus       403 I~vi  406 (535)
                      |.++
T Consensus       333 V~~~  336 (405)
T 4dio_A          333 VRIV  336 (405)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.64  E-value=0.063  Score=53.88  Aligned_cols=107  Identities=20%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-ccc--CCCC----cccCC--C
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKG--YPGT----KSAPT--D  351 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~--~~~a----~~i~~--e  351 (535)
                      ++|+|.|.|.+|..+|..|.+.|..|+.             .|-+.+.+.+..+..+. +.+  ++..    ...+.  +
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLA-------------WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL   71 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH
Confidence            6899999999999999999999999876             23555666655554321 111  1000    11122  2


Q ss_pred             CccccceEEeeccccccccccccccc----c-ceEEEecCC-CCCCHHHHHHHHhCC
Q psy1913         352 IMFDKVDILVPAAIEKVIRKSNADKV----Q-AKIIVEAAN-GPLTPAAHAMLLKKN  402 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN-~p~T~eA~~iL~~rG  402 (535)
                      .+ .+||++|-|...... .+-+..+    + -.+|+.-.| ++-+.+..+.|.++|
T Consensus        72 ~~-~~~D~vi~~v~~~~~-~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~l~~~~  126 (359)
T 1bg6_A           72 AV-KDADVILIVVPAIHH-ASIAANIASYISEGQLIILNPGATGGALEFRKILRENG  126 (359)
T ss_dssp             HH-TTCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTT
T ss_pred             HH-hcCCEEEEeCCchHH-HHHHHHHHHhCCCCCEEEEcCCCchHHHHHHHHHHhcC
Confidence            22 389999999876654 3333333    2 134444444 444445456677765

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.54  E-value=0.078  Score=54.41  Aligned_cols=147  Identities=14%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI  324 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL  324 (535)
                      +-.+.|.+|++..++..--+...+ -.|.  ++.|++|+|.|.|+ ||..+|++|...|+.| .|+|.+..-.-..+..+
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~-~~g~--~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtV-tv~nR~~~~l~~ra~~l  221 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLL-PEGN--RLYGKKCIVINRSEIVGRPLAALLANDGATV-YSVDVNNIQKFTRGESL  221 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTS-CTTC--TTTTCEEEEECCCTTTHHHHHHHHHTTSCEE-EEECSSEEEEEESCCCS
T ss_pred             CcCCCcHHHHHHHHHhhccccccc-ccCC--CCCCCEEEEECCCcchHHHHHHHHHHCCCEE-EEEeCchHHHHhHHHHH
Confidence            446889999876665210000000 0343  58999999999996 6999999999999985 46666532221111001


Q ss_pred             CHHHHHHHHHHcCCcccCCCCccc--C--CCC--ccccceEEeecccc-c-cccccccccccceEEEecCCCC-CCHHHH
Q psy1913         325 NYKDLHTYKITKGTIKGYPGTKSA--P--TDI--MFDKVDILVPAAIE-K-VIRKSNADKVQAKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       325 Di~~L~~~~~~~g~v~~~~~a~~i--~--~el--l~~~~DILiPaA~~-~-~It~~na~~i~AkiIvEgAN~p-~T~eA~  395 (535)
                      -           ..   ....+.+  +  .++  .-..+||+|-|+.. + +|+.+-...  ..+|+.-|-.+ +.+++ 
T Consensus       222 a-----------~~---~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~--GavVIDVgi~rD~d~~v-  284 (320)
T 1edz_A          222 K-----------LN---KHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKE--GAVCINFACTKNFSDDV-  284 (320)
T ss_dssp             S-----------CC---CCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCT--TEEEEECSSSCCBCGGG-
T ss_pred             h-----------hh---cccccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCC--CeEEEEcCCCcccchhH-
Confidence            0           00   0000000  1  112  12478999999873 3 488777533  35777777665 32332 


Q ss_pred             HHHHhCCceeeccccccccCcchhh
Q psy1913         396 AMLLKKNVLIIPDIFANAGGVTVSY  420 (535)
Q Consensus       396 ~iL~~rGI~viPD~laNaGGVivSy  420 (535)
                         .++--.+.|-    -|-+|++.
T Consensus       285 ---~~~a~~itPv----VGpmT~a~  302 (320)
T 1edz_A          285 ---KEKASLYVPM----TGKVTIAM  302 (320)
T ss_dssp             ---GTTEEEEESC----CHHHHHHH
T ss_pred             ---HhhCCeeCCC----ccHHHHHH
Confidence               2333345563    45555543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.49  E-value=0.066  Score=53.95  Aligned_cols=109  Identities=11%  Similarity=0.166  Sum_probs=67.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      +-.+|+|+|+|++|...++.|.+ .+++|++|+|.            |.+.+.+..++.+..      ...+.  +++. 
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~------------~~~~~~~~~~~~~~~------~~~~~~~~ll~~   65 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR------------RLENAQKMAKELAIP------VAYGSYEELCKD   65 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS------------SSHHHHHHHHHTTCC------CCBSSHHHHHHC
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC------------CHHHHHHHHHHcCCC------ceeCCHHHHhcC
Confidence            45799999999999999999988 57899998764            345566666554321      22333  5554 


Q ss_pred             ccceEEeeccccccccccccccc-c--ceEEEecCCCCC--C-HHHHHH---HHhCCceeeccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV-Q--AKIIVEAANGPL--T-PAAHAM---LLKKNVLIIPDI  409 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i-~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~viPD~  409 (535)
                      .++|+++-|+... .+.+.+... +  ..++||-   |+  | .++.++   .+++|+.+...+
T Consensus        66 ~~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~~  125 (330)
T 3e9m_A           66 ETIDIIYIPTYNQ-GHYSAAKLALSQGKPVLLEK---PFTLNAAEAEELFAIAQEQGVFLMEAQ  125 (330)
T ss_dssp             TTCSEEEECCCGG-GHHHHHHHHHHTTCCEEECS---SCCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred             CCCCEEEEcCCCH-HHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            4789988887544 333333222 2  3577774   42  2 344433   456676655433

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=94.45  E-value=0.06  Score=54.30  Aligned_cols=67  Identities=7%  Similarity=0.043  Sum_probs=46.5

Q ss_pred             cEEEEEccccHHH-HHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         281 KTYIVQGFGNVGF-HAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~-~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      .||+|+|+|.+|+ +.+..|.+ .+++|+||+|            .|.+...+..++.|--      ..+++  ++|+ .
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d------------~~~~~a~~~a~~~g~~------~~y~d~~ell~~~   85 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIAS------------RDLTRAREMADRFSVP------HAFGSYEEMLASD   85 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEEC------------SSHHHHHHHHHHHTCS------EEESSHHHHHHCS
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEEC------------CCHHHHHHHHHHcCCC------eeeCCHHHHhcCC
Confidence            5999999999996 56777776 4899999976            5677777777776521      22233  4553 3


Q ss_pred             cceEEeeccc
Q psy1913         356 KVDILVPAAI  365 (535)
Q Consensus       356 ~~DILiPaA~  365 (535)
                      ++|+++-|+.
T Consensus        86 ~iDaV~I~tP   95 (350)
T 4had_A           86 VIDAVYIPLP   95 (350)
T ss_dssp             SCSEEEECSC
T ss_pred             CCCEEEEeCC
Confidence            5677766653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=94.42  E-value=1.3  Score=47.03  Aligned_cols=199  Identities=13%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc------------
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK------------  346 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~------------  346 (535)
                      .|.+..|.|.|.||..+|..|++.|..|++             -|+|.+.+.++.+..-.+ .-|+-+            
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~-------------~D~~~~kv~~L~~g~~pi-~epgl~~ll~~~~~~g~l   75 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLG-------------VDINQQTIDKLQNGQISI-EEPGLQEVYEEVLSSGKL   75 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHTTCCSS-CCTTHHHHHHHHHHTTCE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHCCCCCc-CCCCHHHHHHhhcccCce
Confidence            477899999999999999999999999999             668888877765432111 111111            


Q ss_pred             ccCCCCccccceEEeeccccccccc---------------ccccccc--ceEEEecCCCC-CCHHHH-HHHHhCC-----
Q psy1913         347 SAPTDIMFDKVDILVPAAIEKVIRK---------------SNADKVQ--AKIIVEAANGP-LTPAAH-AMLLKKN-----  402 (535)
Q Consensus       347 ~i~~ell~~~~DILiPaA~~~~It~---------------~na~~i~--AkiIvEgAN~p-~T~eA~-~iL~~rG-----  402 (535)
                      ..+.++  .+||++|-|-....-..               .-++.++  +-+|.+..-.| +|.+.. .+++++|     
T Consensus        76 ~~ttd~--~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~  153 (431)
T 3ojo_A           76 KVSTTP--EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGE  153 (431)
T ss_dssp             EEESSC--CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTT
T ss_pred             EEeCch--hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCC
Confidence            111122  37999998876543211               0112222  34555555555 345543 4566677     


Q ss_pred             ---ceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccc
Q psy1913         403 ---VLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT  479 (535)
Q Consensus       403 ---I~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~  479 (535)
                         +..-|.++ +-|..+....    +...+--     .-++ +..+.+..+.+.+    +...-...+...++.++   
T Consensus       154 d~~v~~~Pe~~-~~G~A~~~~~----~p~~Iv~-----G~~~-~~~~~~~~ly~~~----~~~~~~~~~~~~AE~~K---  215 (431)
T 3ojo_A          154 DIYLVHCPERV-LPGKILEELV----HNNRIIG-----GVTK-ACIEAGKRVYRTF----VQGEMIETDARTAEMSK---  215 (431)
T ss_dssp             TEEEEECCCCC-CTTSHHHHHH----HSCEEEE-----ESSH-HHHHHHHHHHTTT----CCSCEEEEEHHHHHHHH---
T ss_pred             CeEEEECCCcC-CCcchhhccc----CCCEEEE-----eCCH-HHHHHHHHHHHHH----hCCcEEeCCHHHHHHHH---
Confidence               45667654 3343222111    1111101     1122 1222333333322    11111122334444444   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy1913         480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAA  516 (535)
Q Consensus       480 e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AA  516 (535)
                         ++..-+-.......+++..+|++.+  +|...-.
T Consensus       216 ---l~~N~~~a~~Ia~~nE~~~l~e~~G--iD~~~v~  247 (431)
T 3ojo_A          216 ---LMENTYRDVNIALANELTKICNNLN--INVLDVI  247 (431)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHH
Confidence               5666677777788889999999985  6755443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=94.33  E-value=0.029  Score=56.04  Aligned_cols=106  Identities=9%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             CCcEEEEEccccHHHH-HHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         279 ENKTYIVQGFGNVGFH-AARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~-~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      +-.+|+|+|+|++|+. .++.|.+ .+++|++|+|.+            .+.+.+..++.|.       ...+. +.+..
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~------------~~~~~~~~~~~g~-------~~~~~~~~l~~   64 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT------------RAKALPICESWRI-------PYADSLSSLAA   64 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS------------CTTHHHHHHHHTC-------CBCSSHHHHHT
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCC------------HHHHHHHHHHcCC-------CccCcHHHhhc
Confidence            3479999999999985 8887776 578999988753            1223334444331       12233 32356


Q ss_pred             cceEEeecccccccccccccc-cc--ceEEEecCCCCC--C-HHHHHH---HHhCCceeec
Q psy1913         356 KVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPL--T-PAAHAM---LLKKNVLIIP  407 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~viP  407 (535)
                      ++|+++-|+.. ..+.+.+.. ++  ..+++|-   |+  | .+++++   .+++|+.+..
T Consensus        65 ~~D~V~i~tp~-~~h~~~~~~al~~G~~v~~eK---P~~~~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           65 SCDAVFVHSST-ASHFDVVSTLLNAGVHVCVDK---PLAENLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             TCSEEEECSCT-THHHHHHHHHHHTTCEEEEES---SSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEeCCc-hhHHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            89999987753 334444332 22  2577874   42  3 344443   4567876654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.22  E-value=0.046  Score=52.05  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      -++|+|.|.|++|..+|+.|.+.|..|+.+.|.            +.+.+.+..++.|..      ...+. +. -.+||
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r------------~~~~~~~l~~~~g~~------~~~~~~~~-~~~aD   83 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSR------------GPASLSSVTDRFGAS------VKAVELKD-ALQAD   83 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTT------------CGGGGHHHHHHHTTT------EEECCHHH-HTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC------------CHHHHHHHHHHhCCC------cccChHHH-HhcCC
Confidence            368999999999999999999999988875543            333444444443310      01122 22 24789


Q ss_pred             EEeecccccccccccccc---ccceEEEecCCCC
Q psy1913         359 ILVPAAIEKVIRKSNADK---VQAKIIVEAANGP  389 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~---i~AkiIvEgAN~p  389 (535)
                      ++|-|.....+. +-+..   ++-++|+..+|+-
T Consensus        84 vVilavp~~~~~-~v~~~l~~~~~~ivi~~~~g~  116 (220)
T 4huj_A           84 VVILAVPYDSIA-DIVTQVSDWGGQIVVDASNAI  116 (220)
T ss_dssp             EEEEESCGGGHH-HHHTTCSCCTTCEEEECCCCB
T ss_pred             EEEEeCChHHHH-HHHHHhhccCCCEEEEcCCCC
Confidence            999887644332 22222   3457888888875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.20  E-value=1.2  Score=47.15  Aligned_cols=28  Identities=18%  Similarity=0.135  Sum_probs=26.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC--CCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG--RAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~--GakVVa  308 (535)
                      ++|+|.|.|.||..+|..|++.  |.+|++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~   35 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTV   35 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEE
Confidence            5899999999999999999998  789887

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.20  E-value=0.033  Score=58.49  Aligned_cols=31  Identities=23%  Similarity=0.117  Sum_probs=28.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +.+++|.|.|+|.+|..+++.+...|++|++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v  200 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRA  200 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            5789999999999999999999999998776

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.17  E-value=0.033  Score=58.47  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.+.+|+|.|+|.+|..+|+.+...|++|++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v  212 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTG  212 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEE
Confidence            35789999999999999999999999999876

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=94.13  E-value=0.064  Score=54.96  Aligned_cols=109  Identities=11%  Similarity=0.153  Sum_probs=67.9

Q ss_pred             CCcEEEEEccccHHH-HHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         279 ENKTYIVQGFGNVGF-HAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~-~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      +-.+|+|+|+|..+. ..+..|...+++|++|+|            .|.+...+..++.+.      ...+++  ++++ 
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d------------~~~~~a~~~a~~~~~------~~~~~~~~~ll~~   86 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHE------------KDDALAAEFSAVYAD------ARRIATAEEILED   86 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEEC------------SCHHHHHHHHHHSSS------CCEESCHHHHHTC
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEc------------CCHHHHHHHHHHcCC------CcccCCHHHHhcC
Confidence            347999999999984 567777788999999976            567777777776542      223344  5665 


Q ss_pred             ccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceee
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~vi  406 (535)
                      .++|+++-|+. +..+.+-+...   ...++||=-=.....+++++   .+++|+.+.
T Consensus        87 ~~vD~V~I~tp-~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~  143 (361)
T 3u3x_A           87 ENIGLIVSAAV-SSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS  143 (361)
T ss_dssp             TTCCEEEECCC-HHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred             CCCCEEEEeCC-hHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            46899987764 33444443322   23677774111122455544   355676654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=94.12  E-value=0.083  Score=54.22  Aligned_cols=103  Identities=16%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|+||.|.|||++|+.+|+.+...|++|++        ||+..  -  +.   . .+.       +....+- ++| .
T Consensus       138 ~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~--------~d~~~--~--~~---~-~~~-------~~~~~~l~ell-~  193 (334)
T 3kb6_A          138 ELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLC--------YDVVK--R--ED---L-KEK-------GCVYTSLDELL-K  193 (334)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--C--HH---H-HHT-------TCEECCHHHHH-H
T ss_pred             eecCcEEEEECcchHHHHHHHhhcccCceeee--------cCCcc--c--hh---h-hhc-------CceecCHHHHH-h
Confidence            57899999999999999999999999999998        44443  1  11   1 111       1222222 454 4


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHH-HHHHHHhCCc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPA-AHAMLLKKNV  403 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~e-A~~iL~~rGI  403 (535)
                      .|||++-+..     .+.|+.+....++ --+++--|=|++ ..+ ..+.|.+.-|
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i  249 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKF  249 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCE
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCc
Confidence            7899988765     3456666666665 368889999994 433 3355655544

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=94.05  E-value=0.069  Score=54.35  Aligned_cols=108  Identities=14%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      -.+|+|+|+|++|...++.|.+. ++++++|+|            .+.+...+..++.|- .  +.....+.  +++. .
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d------------~~~~~~~~~a~~~~~-~--~~~~~~~~~~~ll~~~   70 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVAS------------RSLEKAKAFATANNY-P--ESTKIHGSYESLLEDP   70 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC------------SSHHHHHHHHHHTTC-C--TTCEEESSHHHHHHCT
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEc------------CCHHHHHHHHHHhCC-C--CCCeeeCCHHHHhcCC
Confidence            36999999999999989888874 789999876            445666666665541 0  11233344  5664 4


Q ss_pred             cceEEeeccccccccccccccc-c--ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV-Q--AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i-~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      ++|+++-|+. +..+.+.+... +  ..++||=   |+  | .+++++   .+++|+.+.
T Consensus        71 ~~D~V~i~tp-~~~h~~~~~~al~aGk~V~~EK---P~a~~~~e~~~l~~~a~~~g~~~~  126 (362)
T 1ydw_A           71 EIDALYVPLP-TSLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM  126 (362)
T ss_dssp             TCCEEEECCC-GGGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred             CCCEEEEcCC-hHHHHHHHHHHHHCCCeEEEec---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence            7999998885 44455444332 2  3577763   52  3 345544   456787654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.01  E-value=0.11  Score=52.28  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=40.6

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|.+|+...++          ..+    ++|++++|.|.|+ ||..+|++|...|+.|+.
T Consensus       131 ~~PcTp~gv~~lL~----------~~~----l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv  179 (276)
T 3ngx_A          131 LVPATPRAVIDIMD----------YYG----YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSV  179 (276)
T ss_dssp             SCCHHHHHHHHHHH----------HHT----CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCcHHHHHHHHH----------HhC----cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEE
Confidence            36889999987766          234    6899999999986 899999999999999764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.96  E-value=0.12  Score=50.53  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=61.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      ++|+|.|+|++|..+|+.|.+.|.  +|++             .|.+.+.+.... +.|...     ...+.  +.+..+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~-------------~d~~~~~~~~~~-~~g~~~-----~~~~~~~~~~~~~   62 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-------------YDINPESISKAV-DLGIID-----EGTTSIAKVEDFS   62 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-------------ECSCHHHHHHHH-HTTSCS-----EEESCGGGGGGTC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEE-------------EeCCHHHHHHHH-HCCCcc-----cccCCHHHHhcCC
Confidence            489999999999999999999998  7776             345556655443 333210     11122  333218


Q ss_pred             ceEEeecccccccccccccc----cc-ceEEEecCCCCCC--HHHHHHHHh
Q psy1913         357 VDILVPAAIEKVIRKSNADK----VQ-AKIIVEAANGPLT--PAAHAMLLK  400 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~p~T--~eA~~iL~~  400 (535)
                      ||+++-|.....+. +-+..    ++ -.+|+..+|....  ....+.|.+
T Consensus        63 aDvVilavp~~~~~-~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~  112 (281)
T 2g5c_A           63 PDFVMLSSPVRTFR-EIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (281)
T ss_dssp             CSEEEECSCHHHHH-HHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             CCEEEEcCCHHHHH-HHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc
Confidence            99999998765432 22222    32 3588888887642  233455544

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=93.93  E-value=0.4  Score=49.33  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .+|+|.|||-+|+.+.+.|.++...||+|.|.
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~   32 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCEEEEEecC
Confidence            37999999999999999998778999999873

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.89  E-value=0.17  Score=54.14  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH----------CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR----------GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA  348 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e----------~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i  348 (535)
                      +-.+|+|.|+|+||+.+++.|.+          .+.+|++|+|++            .+......         ++....
T Consensus         9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~------------~~~~~~~~---------~~~~~~   67 (444)
T 3mtj_A            9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRN------------LDKAEALA---------GGLPLT   67 (444)
T ss_dssp             SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSC------------HHHHHHHH---------TTCCEE
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECC------------HHHhhhhc---------ccCccc
Confidence            45799999999999999988864          467999998753            23222221         112223


Q ss_pred             CC--CCcc-ccceEEeeccccccccccccc-ccc--ceEEEecCCCCC-CHHHH---HHHHhCCceeeccccccccC
Q psy1913         349 PT--DIMF-DKVDILVPAAIEKVIRKSNAD-KVQ--AKIIVEAANGPL-TPAAH---AMLLKKNVLIIPDIFANAGG  415 (535)
Q Consensus       349 ~~--ell~-~~~DILiPaA~~~~It~~na~-~i~--AkiIvEgAN~p~-T~eA~---~iL~~rGI~viPD~laNaGG  415 (535)
                      ++  +++. .++|+++-|......+.+.+. -++  ..+|+|  |-.. ..++.   +..+++|+.+.  |-++.||
T Consensus        68 ~d~~ell~d~diDvVve~tp~~~~h~~~~~~AL~aGKhVvte--nkal~a~~~~eL~~~A~~~gv~l~--~Ea~V~~  140 (444)
T 3mtj_A           68 TNPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTA--NKHLVAKYGNEIFAAAQAKGVMVT--FEAAVAG  140 (444)
T ss_dssp             SCTHHHHTCTTCCEEEECCCSSTTHHHHHHHHHHTTCEEEEC--CHHHHHHHHHHHHHHHHHHTCCEE--CGGGSST
T ss_pred             CCHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHcCCEEEEC--CcccCHHHHHHHHHHHHHhCCeEE--EEEeeeC
Confidence            33  5664 579999999875444444432 222  245554  2222 22333   33467788764  3444443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.89  E-value=0.069  Score=47.66  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             CCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       275 ~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +..+.+.+|+|.|+|.+|+.+++.|.+.|++|+++.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid   49 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVD   49 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            445678999999999999999999999999988753

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=93.86  E-value=0.059  Score=55.11  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      +..+|+|+|+|++|...++.|.+. +++|++|+|            .|.+.+. ..++.|       ...+++  +++. 
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d------------~~~~~~~-~a~~~g-------~~~~~~~~~ll~~   63 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFD------------ILAEKRE-AAAQKG-------LKIYESYEAVLAD   63 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEEC------------SSHHHHH-HHHTTT-------CCBCSCHHHHHHC
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEc------------CCHHHHH-HHHhcC-------CceeCCHHHHhcC
Confidence            457999999999999999988876 889999876            4445543 223322       223344  5664 


Q ss_pred             ccceEEeeccccccccccccccc---cceEEEec
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV---QAKIIVEA  385 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i---~AkiIvEg  385 (535)
                      .++|+++-|+.. ..+.+.+...   ...++||=
T Consensus        64 ~~~D~V~i~tp~-~~h~~~~~~al~aGkhVl~EK   96 (359)
T 3e18_A           64 EKVDAVLIATPN-DSHKELAISALEAGKHVVCEK   96 (359)
T ss_dssp             TTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEES
T ss_pred             CCCCEEEEcCCc-HHHHHHHHHHHHCCCCEEeeC
Confidence            578999877753 3344333222   23577773

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.81  E-value=0.082  Score=51.97  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      ++|+|.|+ |++|..+|+.|.+.|..|++             .|.+.+.+.+..+ .| +      ...+. +.+ .+||
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~-------------~~r~~~~~~~~~~-~g-~------~~~~~~~~~-~~aD   69 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAA-------------IEIAPEGRDRLQG-MG-I------PLTDGDGWI-DEAD   69 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEE-------------ECCSHHHHHHHHH-TT-C------CCCCSSGGG-GTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHh-cC-C------CcCCHHHHh-cCCC
Confidence            58999999 99999999999999998886             3355566655543 22 1      11122 333 4899


Q ss_pred             EEeeccccccccccccccc----c-ceEEEecCCCC
Q psy1913         359 ILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGP  389 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p  389 (535)
                      ++|-|.....+ .+-+..+    + -++|+..+++.
T Consensus        70 vVi~av~~~~~-~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           70 VVVLALPDNII-EKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             EEEECSCHHHH-HHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             EEEEcCCchHH-HHHHHHHHHhCCCCCEEEECCCCc
Confidence            99999886653 3333333    2 36888877775

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=93.77  E-value=0.077  Score=53.13  Aligned_cols=104  Identities=14%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             cEEEEEccccHHH-HHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913         281 KTYIVQGFGNVGF-HAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~-~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~  357 (535)
                      .+|+|+|+|++|. ..++.|.+. +++|+ |+|            .|.+.+.+..++.|.- .    ...+. +.+..++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d------------~~~~~~~~~a~~~g~~-~----~~~~~~~~l~~~~   64 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCT------------RNPKVLGTLATRYRVS-A----TCTDYRDVLQYGV   64 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EEC------------SCHHHHHHHHHHTTCC-C----CCSSTTGGGGGCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEE-EEe------------CCHHHHHHHHHHcCCC-c----cccCHHHHhhcCC
Confidence            5899999999998 478888764 78888 654            5667777776665421 0    01223 4446689


Q ss_pred             eEEeecccccccccccc-ccccc--eEEEecCCCCC--C-HHHHH---HHHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSNA-DKVQA--KIIVEAANGPL--T-PAAHA---MLLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~na-~~i~A--kiIvEgAN~p~--T-~eA~~---iL~~rGI~vi  406 (535)
                      |+++-|.... .+.+.+ .-+++  .+++|-   |+  | .++.+   ..+++|+.+.
T Consensus        65 D~V~i~tp~~-~h~~~~~~al~~Gk~V~~EK---P~~~~~~~~~~l~~~a~~~g~~~~  118 (323)
T 1xea_A           65 DAVMIHAATD-VHSTLAAFFLHLGIPTFVDK---PLAASAQECENLYELAEKHHQPLY  118 (323)
T ss_dssp             SEEEECSCGG-GHHHHHHHHHHTTCCEEEES---CSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEECCch-hHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHhcCCeEE
Confidence            9999998643 344444 23333  477873   42  3 34443   3456787654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.77  E-value=0.22  Score=50.17  Aligned_cols=105  Identities=11%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC----CcccCC-CCcc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG----TKSAPT-DIMF  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~----a~~i~~-ell~  354 (535)
                      ..+|+|.|.|++|..+|..|.+.|..|+.             .+-+.+.+..+.+....+ ..++    ....+. +- .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~-------------~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~-~   78 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVIL-------------WARRKEIVDLINVSHTSP-YVEESKITVRATNDLEE-I   78 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHHHSCBT-TBTTCCCCSEEESCGGG-C
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHHhCCcc-cCCCCeeeEEEeCCHHH-h
Confidence            46999999999999999999999998876             224455665555443222 1121    222222 22 3


Q ss_pred             ccceEEeeccccccccccccccc--cceEEEecCCCCC---CHHHHHHHHh
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPL---TPAAHAMLLK  400 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~---T~eA~~iL~~  400 (535)
                      .+||++|-|.... ...+-+..+  .-++|+.-+|+-.   .....+++.+
T Consensus        79 ~~aDvVil~vk~~-~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~  128 (335)
T 1z82_A           79 KKEDILVIAIPVQ-YIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEE  128 (335)
T ss_dssp             CTTEEEEECSCGG-GHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHH
T ss_pred             cCCCEEEEECCHH-HHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHH
Confidence            4899999987643 333333334  3578999999732   2334445544

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.76  E-value=0.082  Score=52.23  Aligned_cols=41  Identities=24%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      ++|+|.|.|++|..+|..|++.|+.|+.             .|.+.+.+.+..+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l-------------~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTA-------------YDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE-------------EeCCHHHHHHHHH
Confidence            6899999999999999999999999987             5566666655543

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=93.72  E-value=0.22  Score=54.43  Aligned_cols=177  Identities=13%  Similarity=0.122  Sum_probs=119.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCc
Q psy1913         171 KYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESA  250 (535)
Q Consensus       171 ~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~a  250 (535)
                      ..+-.|.+.+...|+.++.+  ..||..-|-=.|++..  .---|.+.|+..        .-|+-.+          -.-
T Consensus       203 Rv~g~eyd~fvdefv~av~~--~fGp~~~I~~EDf~~~--~af~il~ryr~~--------ipvFnDD----------iqG  260 (555)
T 1gq2_A          203 RIRGQAYDDLLDEFMEAVTS--RYGMNCLIQFEDFANA--NAFRLLHKYRNK--------YCTFNDD----------IQG  260 (555)
T ss_dssp             CCCTHHHHHHHHHHHHHHHH--HHCTTCEEEECSCCHH--HHHHHHHHHTTT--------SEEEETT----------THH
T ss_pred             CCchHHHHHHHHHHHHHHHH--hhCCCcEEeecccCCc--cHHHHHHHHhcc--------CCEecCc----------cch
Confidence            34667888899999999976  6888887878888743  233456777541        1223221          233


Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCC
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDK  320 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~  320 (535)
                      ||-=+..++.+++      +..|.  .|+..||++.|.|..|..+|++|..    .|.      +=+-+.|++|-|+...
T Consensus       261 Ta~V~lAgllnAl------ki~gk--~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r  332 (555)
T 1gq2_A          261 TASVAVAGLLAAL------RITKN--RLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR  332 (555)
T ss_dssp             HHHHHHHHHHHHH------HHHTS--CGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC
T ss_pred             HHHHHHHHHHHHH------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCC
Confidence            4444444555443      45664  4899999999999999999999987    684      4566799999999854


Q ss_pred             CCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913         321 GTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG  388 (535)
Q Consensus       321 G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~  388 (535)
                      . ||+..     +...-.-     ......  +.+ .+++||||=++. ++++|++-+..+.    -.||---||-
T Consensus       333 ~-~l~~~-----k~~~A~~-----~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  397 (555)
T 1gq2_A          333 A-SLTPE-----KEHFAHE-----HCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNP  397 (555)
T ss_dssp             S-SCCTT-----GGGGCBS-----CCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             C-CchHH-----HHHHHhh-----cCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            2 25532     2221000     001122  333 357999999996 8999999998884    5899999983

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=93.68  E-value=0.1  Score=51.93  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=49.4

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      -+||++.|||++|+.+++.  . +..+++|.|      +..| +|                   +....++  +++. ++
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~------~k~g-el-------------------gv~a~~d~d~lla-~p   61 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD------RISK-DI-------------------PGVVRLDEFQVPS-DV   61 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC------SSCC-CC-------------------SSSEECSSCCCCT-TC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe------cccc-cc-------------------CceeeCCHHHHhh-CC
Confidence            5799999999999999998  4 999999876      2222 12                   2222333  6776 99


Q ss_pred             eEEeeccccccccccccccccc
Q psy1913         358 DILVPAAIEKVIRKSNADKVQA  379 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i~A  379 (535)
                      |+++.||....+.+.-..-+++
T Consensus        62 D~VVe~A~~~av~e~~~~iL~a   83 (253)
T 1j5p_A           62 STVVECASPEAVKEYSLQILKN   83 (253)
T ss_dssp             CEEEECSCHHHHHHHHHHHTTS
T ss_pred             CEEEECCCHHHHHHHHHHHHHC
Confidence            9999999776665543444444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=93.65  E-value=0.077  Score=55.88  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CCCcEEEEEccccHHH-HHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         278 MENKTYIVQGFGNVGF-HAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~-~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      .+-.+|+|+|+|++|+ ..++.|.+. +++||+|+|            .|.+.+.+..++.|.-.  .+...++.  +++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d------------~~~~~~~~~a~~~g~~~--~~~~~~~~~~~ll  146 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS------------GNAEKAKIVAAEYGVDP--RKIYDYSNFDKIA  146 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC------------SCHHHHHHHHHHTTCCG--GGEECSSSGGGGG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEc------------CCHHHHHHHHHHhCCCc--ccccccCCHHHHh
Confidence            3457999999999997 778887764 789999876            45566666666654210  00011233  566


Q ss_pred             c-ccceEEeecccccccccccccc-ccc--eEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         354 F-DKVDILVPAAIEKVIRKSNADK-VQA--KIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       354 ~-~~~DILiPaA~~~~It~~na~~-i~A--kiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      . .++|+++-|.... .+.+.+.. +++  .++||=   |+  | .+++++   .+++|+.+.
T Consensus       147 ~~~~vD~V~iatp~~-~h~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  205 (433)
T 1h6d_A          147 KDPKIDAVYIILPNS-LHAEFAIRAFKAGKHVMCEK---PMATSVADCQRMIDAAKAANKKLM  205 (433)
T ss_dssp             GCTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCEEEEcCCch-hHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHhCCeEE
Confidence            4 4799999987543 34443332 222  477773   42  2 344443   345666553

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=93.61  E-value=0.12  Score=52.05  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             cEEEEEccccHHHHHHHHHH-H-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         281 KTYIVQGFGNVGFHAARYFR-R-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~-e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      .+|+|+|+|++|...++.|. + .+++|++|+|            .|.+.+.+..++.|-     .....+.  +++. .
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d------------~~~~~~~~~~~~~g~-----~~~~~~~~~~ll~~~   65 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTD------------VNQEAAQKVVEQYQL-----NATVYPNDDSLLADE   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEEC------------SSHHHHHHHHHHTTC-----CCEEESSHHHHHHCT
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEc------------CCHHHHHHHHHHhCC-----CCeeeCCHHHHhcCC
Confidence            58999999999999999888 5 5899999875            556677776666541     1223333  5554 4


Q ss_pred             cceEEeeccc
Q psy1913         356 KVDILVPAAI  365 (535)
Q Consensus       356 ~~DILiPaA~  365 (535)
                      ++|+++-|..
T Consensus        66 ~~D~V~i~tp   75 (344)
T 3mz0_A           66 NVDAVLVTSW   75 (344)
T ss_dssp             TCCEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6888888774

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=93.59  E-value=0.21  Score=55.08  Aligned_cols=175  Identities=11%  Similarity=0.184  Sum_probs=118.4

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913         172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT  251 (535)
Q Consensus       172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT  251 (535)
                      .+-.|...+...|+.++.+  .+||..-|-=.|++..  .---|.+.|+..        .-|+-.+          -.-|
T Consensus       242 v~g~~Yd~fvdefv~av~~--~fGp~~~I~~EDf~~p--~af~il~ryr~~--------ipvFnDD----------iqGT  299 (605)
T 1o0s_A          242 VRGKDYDTLLDNFMKACTK--KYGQKTLIQFEDFANP--NAFRLLDKYQDK--------YTMFNDD----------IQGT  299 (605)
T ss_dssp             CCSHHHHHHHHHHHHHHHH--HHCTTCEEEECSCCHH--HHHHHHHHHTTT--------SEEEEHH----------HHHH
T ss_pred             CChHHHHHHHHHHHHHHHH--HhCCCcEeeHhhcCCc--cHHHHHHHhccC--------CCeeCcc----------cchH
Confidence            4567788899999999886  6888887878888743  233456777541        1233222          1234


Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCC
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKG  321 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G  321 (535)
                      |-=+..++.++      ++..|.  .|+..||+|.|.|..|..+|++|..    .|.      +=+-+.|++|-|+....
T Consensus       300 A~V~lAgllnA------lki~gk--~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~  371 (605)
T 1o0s_A          300 ASVIVAGLLTC------TRVTKK--LVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRK  371 (605)
T ss_dssp             HHHHHHHHHHH------HHHHCC--CGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCS
T ss_pred             HHHHHHHHHHH------HHHhCC--ChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCC
Confidence            44444455533      345674  4899999999999999999999987    785      55667999999997542


Q ss_pred             CCCCHHHHHHHHHHcCCcccCCCCc-ccCC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913         322 TEINYKDLHTYKITKGTIKGYPGTK-SAPT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG  388 (535)
Q Consensus       322 ~dLDi~~L~~~~~~~g~v~~~~~a~-~i~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~  388 (535)
                       ||+..     +..      |.... ....  +.+ .+++||||=++. ++++|++-+..+.    -.||---||-
T Consensus       372 -~l~~~-----k~~------~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  435 (605)
T 1o0s_A          372 -EMNPR-----HVQ------FAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNP  435 (605)
T ss_dssp             -SCCGG-----GTT------TCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             -CchHH-----HHH------HHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence             35532     211      11100 1122  333 357999999996 8999999998884    5899999983

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.59  E-value=0.15  Score=51.47  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-CCCCcccCC-CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-YPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-~~~a~~i~~-ell~~~~  357 (535)
                      -++|+|.|.|..|..+|..|+ .|..|+.             .|.+.+.+.+..+..  ... ..+.+..+. +- -.+|
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v-------------~d~~~~~~~~~~~~l--~~~~~~~i~~~~~~~~-~~~a   74 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVL-------------QDVSEKALEAAREQI--PEELLSKIEFTTTLEK-VKDC   74 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEE-------------ECSCHHHHHHHHHHS--CGGGGGGEEEESSCTT-GGGC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEE-------------EECCHHHHHHHHHHH--HHHHhCCeEEeCCHHH-HcCC
Confidence            589999999999999999999 9999988             567778887776651  000 001111222 22 3589


Q ss_pred             eEEeecccccc
Q psy1913         358 DILVPAAIEKV  368 (535)
Q Consensus       358 DILiPaA~~~~  368 (535)
                      |++|.|..++.
T Consensus        75 DlVieavpe~~   85 (293)
T 1zej_A           75 DIVMEAVFEDL   85 (293)
T ss_dssp             SEEEECCCSCH
T ss_pred             CEEEEcCcCCH
Confidence            99999988765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.55  E-value=0.12  Score=50.45  Aligned_cols=107  Identities=9%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC-----CcccCC-CCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG-----TKSAPT-DIMF  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~-----a~~i~~-ell~  354 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.             .|.+.+.+.+..+..-.+...++     ....+. ++..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~-------------~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   70 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTL-------------IDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDH   70 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCT
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEE-------------EECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcc
Confidence            5899999999999999999999998877             33555666555544211111111     011122 3332


Q ss_pred             --ccceEEeeccccccccccccc----ccc-ceEEEecCCCCCC-HHHHHHHHhC
Q psy1913         355 --DKVDILVPAAIEKVIRKSNAD----KVQ-AKIIVEAANGPLT-PAAHAMLLKK  401 (535)
Q Consensus       355 --~~~DILiPaA~~~~It~~na~----~i~-AkiIvEgAN~p~T-~eA~~iL~~r  401 (535)
                        .+||++|-|.....+ .+-+.    .++ -++|+.-.|+..+ ....+.|.+.
T Consensus        71 ~~~~~d~vi~~v~~~~~-~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~  124 (316)
T 2ew2_A           71 QNEQVDLIIALTKAQQL-DAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKE  124 (316)
T ss_dssp             TSCCCSEEEECSCHHHH-HHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGG
T ss_pred             cCCCCCEEEEEeccccH-HHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCc
Confidence              289999999876543 22222    232 3688888887654 3344444443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=93.53  E-value=0.12  Score=52.12  Aligned_cols=111  Identities=12%  Similarity=0.103  Sum_probs=68.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHC--------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRG--------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~--------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      |+..||+|+|+|.+|..-++.|.+.        +++|+||+|            .|.+.+.+..++.|.      ....+
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d------------~~~~~a~~~a~~~g~------~~~~~   65 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCG------------RDAEAVRAAAGKLGW------STTET   65 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEEC------------SSHHHHHHHHHHHTC------SEEES
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEc------------CCHHHHHHHHHHcCC------CcccC
Confidence            5567999999999998777766542        458999875            667778777777652      22334


Q ss_pred             C--CCcc-ccceEEeecccccccccccccc-cc--ceEEEecCCCCCCHHHHHH---HH---hCCceeec
Q psy1913         350 T--DIMF-DKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPLTPAAHAM---LL---KKNVLIIP  407 (535)
Q Consensus       350 ~--ell~-~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~T~eA~~i---L~---~rGI~viP  407 (535)
                      +  +++. .++|+++=|+. +..+.+-+.. ++  ..++||=-=..+..||+++   .+   ++|+.+..
T Consensus        66 d~~~ll~~~~iDaV~I~tP-~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v  134 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTP-GDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMV  134 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSC-GGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CHHHHhcCCCCCEEEEeCC-hHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEE
Confidence            4  5664 47888887764 3344443322 22  3677774222223566665   22   25665543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=93.47  E-value=0.32  Score=43.47  Aligned_cols=110  Identities=18%  Similarity=0.122  Sum_probs=64.4

Q ss_pred             CCCcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--C
Q psy1913         278 MENKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--D  351 (535)
Q Consensus       278 l~g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--e  351 (535)
                      ++-++|+|+|.    |++|+.+++.|.+.|++|+.        +||++.               .+.   |...++.  +
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~--------vnp~~~---------------~i~---G~~~~~s~~e   65 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLP--------VNPNYD---------------EIE---GLKCYRSVRE   65 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEE--------ECTTCS---------------EET---TEECBSSGGG
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEE--------eCCCCC---------------eEC---CeeecCCHHH
Confidence            35689999999    99999999999999998666        344430               011   2222222  3


Q ss_pred             CccccceEEeeccccccccccccc---cccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchh
Q psy1913         352 IMFDKVDILVPAAIEKVIRKSNAD---KVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS  419 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~na~---~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivS  419 (535)
                      +. .++|+.+-|... ....+-+.   ...++.|+.-. +-.+.+..++.+++|+.++   =-|+=|++..
T Consensus        66 l~-~~vDlvii~vp~-~~v~~v~~~~~~~g~~~i~~~~-~~~~~~l~~~a~~~Gi~~i---gpnc~g~~~~  130 (138)
T 1y81_A           66 LP-KDVDVIVFVVPP-KVGLQVAKEAVEAGFKKLWFQP-GAESEEIRRFLEKAGVEYS---FGRCIMVETS  130 (138)
T ss_dssp             SC-TTCCEEEECSCH-HHHHHHHHHHHHTTCCEEEECT-TSCCHHHHHHHHHHTCEEE---CSCCHHHHC-
T ss_pred             hC-CCCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcC-ccHHHHHHHHHHHCCCEEE---cCCcceEEcc
Confidence            33 367877776552 22222221   12233333322 1247888888999999876   2355566554

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.47  E-value=0.072  Score=54.75  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      .+|+|.|+|+||+.+++.|.+.         +.+|++|+|++  ...+.+  ++.                  ....++ 
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~--~~~~~~--~~~------------------~~~~~d~   61 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRD--PRKPRA--IPQ------------------ELLRAEP   61 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSC--TTSCCS--SCG------------------GGEESSC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECC--HHHhhc--cCc------------------ccccCCH
Confidence            5899999999999999999875         57999999986  223344  421                  112223 


Q ss_pred             -CCccccceEEeeccccc
Q psy1913         351 -DIMFDKVDILVPAAIEK  367 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~  367 (535)
                       +++  ++||++.|+...
T Consensus        62 ~~ll--~iDvVve~t~~~   77 (332)
T 2ejw_A           62 FDLL--EADLVVEAMGGV   77 (332)
T ss_dssp             CCCT--TCSEEEECCCCS
T ss_pred             HHHh--CCCEEEECCCCc
Confidence             566  999999997544

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.47  E-value=0.055  Score=55.28  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~  313 (535)
                      .+|+|.|||.+|+.+++.|.+. +.+|++|+|.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~   36 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK   36 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            4899999999999999999875 68999999863

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=93.46  E-value=0.11  Score=53.08  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHH-H-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFR-R-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~-e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      .++..+|+|+|+|++|...++.|. + .+++|++|+|.            |.+.+.+..++.|-     ....++.  ++
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~------------~~~~~~~~a~~~g~-----~~~~~~~~~~l   82 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI------------VAGRAQAALDKYAI-----EAKDYNDYHDL   82 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS------------STTHHHHHHHHHTC-----CCEEESSHHHH
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC------------CHHHHHHHHHHhCC-----CCeeeCCHHHH
Confidence            355679999999999999999888 4 58999998764            33455555555541     1222333  55


Q ss_pred             cc-ccceEEeeccc
Q psy1913         353 MF-DKVDILVPAAI  365 (535)
Q Consensus       353 l~-~~~DILiPaA~  365 (535)
                      +. .++|+++-|+.
T Consensus        83 l~~~~~D~V~i~tp   96 (357)
T 3ec7_A           83 INDKDVEVVIITAS   96 (357)
T ss_dssp             HHCTTCCEEEECSC
T ss_pred             hcCCCCCEEEEcCC
Confidence            54 36788887764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.43  E-value=0.058  Score=54.15  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=32.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++|++|.|.|.|.||...++.|.+.|++|+.|+.
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence            47899999999999999999999999999998774

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=93.41  E-value=0.44  Score=49.43  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEec
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVE  311 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD  311 (535)
                      -.+|+|.|||-+|+.+.|.|.+. ...||+|.|
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            35999999999999999999886 789999987

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.34  E-value=0.11  Score=48.85  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++|++|.|.|. |.+|+++++.|++.|++|++++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~   52 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMV   52 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence            578999999997 9999999999999999999865

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.30  E-value=0.075  Score=54.72  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc---
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF---  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~---  354 (535)
                      -++|.|+|+|++|..+|+.|.+.|..|++             .|.+.+.+....+ .|       ....+.  +++.   
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~-------------~dr~~~~~~~a~~-~G-------~~~~~~~~e~~~~a~   66 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFG-------------YNRSRSGAKSAVD-EG-------FDVSADLEATLQRAA   66 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSCHHHHHHHHH-TT-------CCEESCHHHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHH-cC-------CeeeCCHHHHHHhcc
Confidence            46899999999999999999999999988             5567776665443 32       222222  3443   


Q ss_pred             ccceEEeecccccccccccccccc----ceEEEecCCCCCCHHHHHHHHhC--Cceeec
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKVQ----AKIIVEAANGPLTPAAHAMLLKK--NVLIIP  407 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i~----AkiIvEgAN~p~T~eA~~iL~~r--GI~viP  407 (535)
                      .+||++|-|.....+ .+-...+.    -.+|+..+.  +....-+.+.+.  ++.++|
T Consensus        67 ~~aDlVilavP~~~~-~~vl~~l~~~~~~~iv~Dv~S--vk~~i~~~~~~~~~~~~~v~  122 (341)
T 3ktd_A           67 AEDALIVLAVPMTAI-DSLLDAVHTHAPNNGFTDVVS--VKTAVYDAVKARNMQHRYVG  122 (341)
T ss_dssp             HTTCEEEECSCHHHH-HHHHHHHHHHCTTCCEEECCS--CSHHHHHHHHHTTCGGGEEC
T ss_pred             cCCCEEEEeCCHHHH-HHHHHHHHccCCCCEEEEcCC--CChHHHHHHHHhCCCCcEec
Confidence            258999999875433 23223331    246665543  233322223332  466777

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=93.30  E-value=0.071  Score=52.57  Aligned_cols=109  Identities=13%  Similarity=0.073  Sum_probs=63.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      +++| ++.|.|.|.+|+.++..|.+.|+ +|+ |.+            -+.+++.++.++.+       ...++.  +. 
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~-v~n------------R~~~ka~~la~~~~-------~~~~~~~~~~-  163 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIW-VVN------------RTIERAKALDFPVK-------IFSLDQLDEV-  163 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEE-EEE------------SCHHHHHTCCSSCE-------EEEGGGHHHH-
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEE-EEe------------CCHHHHHHHHHHcc-------cCCHHHHHhh-
Confidence            3578 99999999999999999999998 554 443            33444333222111       111111  11 


Q ss_pred             cccceEEeecccccccc-ccc--ccccc-ceEEEecCCCCCCHHHHHHHHhCCce-eeccc
Q psy1913         354 FDKVDILVPAAIEKVIR-KSN--ADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVL-IIPDI  409 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It-~~n--a~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~-viPD~  409 (535)
                      -.++||+|-|..-+.-. ...  .+.++ ..+|++-+-+ .|+-..+. +++|+. ++|..
T Consensus       164 ~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~-~T~ll~~A-~~~G~~~~~~Gl  222 (253)
T 3u62_A          164 VKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF-DTPLVVKA-RKLGVKHIIKGN  222 (253)
T ss_dssp             HHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS-CCHHHHHH-HHHTCSEEECTH
T ss_pred             hcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC-CcHHHHHH-HHCCCcEEECCH
Confidence            23789999776432211 011  11232 4677887777 66665443 467877 66543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.30  E-value=0.071  Score=50.60  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~  357 (535)
                      ..++|+|.|+|++|+.+++.|.+.|.+|+++             |-+.+.+.+..+.        +....+. +.+ .+|
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~-------------~r~~~~~~~~~~~--------g~~~~~~~~~~-~~~   84 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVG-------------SRNPKRTARLFPS--------AAQVTFQEEAV-SSP   84 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEE-------------ESSHHHHHHHSBT--------TSEEEEHHHHT-TSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHc--------CCceecHHHHH-hCC
Confidence            4578999999999999999999999988762             2444544433221        1121222 333 379


Q ss_pred             eEEeeccccccccccccc---cccceEEEecCCCC
Q psy1913         358 DILVPAAIEKVIRKSNAD---KVQAKIIVEAANGP  389 (535)
Q Consensus       358 DILiPaA~~~~It~~na~---~i~AkiIvEgAN~p  389 (535)
                      |++|-|.....+. +-..   .+.-++|+.-+|+-
T Consensus        85 DvVi~av~~~~~~-~v~~l~~~~~~~~vv~~s~g~  118 (215)
T 2vns_A           85 EVIFVAVFREHYS-SLCSLSDQLAGKILVDVSNPT  118 (215)
T ss_dssp             SEEEECSCGGGSG-GGGGGHHHHTTCEEEECCCCC
T ss_pred             CEEEECCChHHHH-HHHHHHHhcCCCEEEEeCCCc
Confidence            9999998754321 1111   11346777777765

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=93.27  E-value=0.51  Score=48.67  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|.|||-+|+.+.|.|.++   ...||+|.|.
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~   36 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4899999999999999999886   4799999873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.27  E-value=0.049  Score=56.56  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++.+++|.|.|+|.+|..+++.+...|++|++
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~  200 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMA  200 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            46799999999999999999999999999655

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=93.23  E-value=0.044  Score=54.89  Aligned_cols=123  Identities=13%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++.          .+.  +++|+++.|.|.|.+|+.++..|.+.|++-|.|.+++-            +...
T Consensus       100 D~~G~~~~L~~----------~~~--~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~------------~~a~  155 (277)
T 3don_A          100 DGIGYVNGLKQ----------IYE--GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM------------SRFN  155 (277)
T ss_dssp             HHHHHHHHHHH----------HST--TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG------------GGGT
T ss_pred             hHHHHHHHHHH----------hCC--CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH------------HHHH
Confidence            47787776662          343  46899999999999999999999999994444444431            1111


Q ss_pred             HHHHHcCCcccCCCCcccCC--CCccccceEEeeccccccccc--c--cccccc-ceEEEecCCCC-CCHHHHHHHHhCC
Q psy1913         331 TYKITKGTIKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRK--S--NADKVQ-AKIIVEAANGP-LTPAAHAMLLKKN  402 (535)
Q Consensus       331 ~~~~~~g~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~--~--na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rG  402 (535)
                      +...      .+ ....++.  +. -.++||+|-|+.-+.-..  .  ....++ ..+|++-.=+| .|+- -+..+++|
T Consensus       156 ~la~------~~-~~~~~~~~~~~-~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T~l-l~~A~~~G  226 (277)
T 3don_A          156 NWSL------NI-NKINLSHAESH-LDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTPI-LIEAEQRG  226 (277)
T ss_dssp             TCCS------CC-EEECHHHHHHT-GGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSCHH-HHHHHHTT
T ss_pred             HHHH------hc-ccccHhhHHHH-hcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCCHH-HHHHHHCc
Confidence            1000      00 0001111  12 247899997765332111  1  122333 47889988667 5764 34457888


Q ss_pred             ceee
Q psy1913         403 VLII  406 (535)
Q Consensus       403 I~vi  406 (535)
                      +.++
T Consensus       227 ~~~~  230 (277)
T 3don_A          227 NPIY  230 (277)
T ss_dssp             CCEE
T ss_pred             CEEe
Confidence            7654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.22  E-value=0.15  Score=49.66  Aligned_cols=87  Identities=13%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|..+|+.|.+.|.+|++             .|.+.+.+.... +.|..     ....+.  ++  .+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~-------------~~~~~~~~~~~~-~~g~~-----~~~~~~~~~~--~~~D   59 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIG-------------VSRQQSTCEKAV-ERQLV-----DEAGQDLSLL--QTAK   59 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHH-HTTSC-----SEEESCGGGG--TTCS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHH-hCCCC-----ccccCCHHHh--CCCC
Confidence            4799999999999999999999998877             335666665544 33321     011222  34  6899


Q ss_pred             EEeecccccccccccc----cccc-ceEEEecCCCC
Q psy1913         359 ILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP  389 (535)
Q Consensus       359 ILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p  389 (535)
                      ++|-|.....+. +-+    +.++ -.+|+..+|.+
T Consensus        60 ~vi~av~~~~~~-~~~~~l~~~~~~~~~vv~~~~~~   94 (279)
T 2f1k_A           60 IIFLCTPIQLIL-PTLEKLIPHLSPTAIVTDVASVK   94 (279)
T ss_dssp             EEEECSCHHHHH-HHHHHHGGGSCTTCEEEECCSCC
T ss_pred             EEEEECCHHHHH-HHHHHHHhhCCCCCEEEECCCCc
Confidence            999998765322 222    2232 35777776643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.19  E-value=0.58  Score=47.58  Aligned_cols=133  Identities=14%  Similarity=0.163  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         251 TGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       251 Tg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -+.|...+++          ..|.  +++++++.|.|.|.+|+.++..|.+.|++-|.|++++       .  =+.+...
T Consensus       131 D~~Gf~~~L~----------~~~~--~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt-------~--~~~~~a~  189 (312)
T 3t4e_A          131 DGTGHIRAIK----------ESGF--DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK-------D--DFFEKAV  189 (312)
T ss_dssp             HHHHHHHHHH----------HTTC--CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-------S--THHHHHH
T ss_pred             cHHHHHHHHH----------hcCC--CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC-------C--chHHHHH
Confidence            3677766665          2344  4789999999999999999999999999544444432       0  1144454


Q ss_pred             HHHHHcCCcccCCC-CcccCC-CC---c--cccceEEeeccccccc--ccc----cccccc-ceEEEecCCCC-CCHHHH
Q psy1913         331 TYKITKGTIKGYPG-TKSAPT-DI---M--FDKVDILVPAAIEKVI--RKS----NADKVQ-AKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       331 ~~~~~~g~v~~~~~-a~~i~~-el---l--~~~~DILiPaA~~~~I--t~~----na~~i~-AkiIvEgAN~p-~T~eA~  395 (535)
                      +..++.+..  ++. ...++. ++   -  -.++||+|-|+.-+.-  ...    +...++ ..+|.+-.=+| -|+=..
T Consensus       190 ~la~~~~~~--~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~  267 (312)
T 3t4e_A          190 AFAKRVNEN--TDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQ  267 (312)
T ss_dssp             HHHHHHHHH--SSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHHHH
T ss_pred             HHHHHhhhc--cCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHHHH
Confidence            444332110  000 011111 21   1  1378999988764431  111    123343 47889999998 577544


Q ss_pred             HHHHhCCceeec
Q psy1913         396 AMLLKKNVLIIP  407 (535)
Q Consensus       396 ~iL~~rGI~viP  407 (535)
                      . -+++|..+++
T Consensus       268 ~-A~~~G~~~~~  278 (312)
T 3t4e_A          268 Q-AQQAGCKTID  278 (312)
T ss_dssp             H-HHHTTCEEEC
T ss_pred             H-HHHCCCeEEC
Confidence            4 3678876543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.18  E-value=0.05  Score=52.42  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      +.++|.|.|.|++|..+++.|.+.|    ..|+. .|.+       - +-           .       +....+.  +.
T Consensus         3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~-~~~~-------~-~~-----------~-------g~~~~~~~~~~   55 (262)
T 2rcy_A            3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFY-YGPS-------K-KN-----------T-------TLNYMSSNEEL   55 (262)
T ss_dssp             SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEE-ECSS-------C-CS-----------S-------SSEECSCHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEE-EeCC-------c-cc-----------C-------ceEEeCCHHHH
Confidence            4578999999999999999999988    46543 4432       1 00           1       1121222  22


Q ss_pred             ccccceEEeeccccccccc---cccccccceEEEecCCCCCCHHHHHHHHh--CCceeeccccc
Q psy1913         353 MFDKVDILVPAAIEKVIRK---SNADKVQAKIIVEAANGPLTPAAHAMLLK--KNVLIIPDIFA  411 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~---~na~~i~AkiIvEgAN~p~T~eA~~iL~~--rGI~viPD~la  411 (535)
                      + .+||++|-|.....+.+   +-.+.++-++|+--.|+-......+.|.+  +.+.++|....
T Consensus        56 ~-~~~D~vi~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~  118 (262)
T 2rcy_A           56 A-RHCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPC  118 (262)
T ss_dssp             H-HHCSEEEECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGG
T ss_pred             H-hcCCEEEEEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHH
Confidence            2 37999999987554321   12222334567766776433444555543  23567777643

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=93.18  E-value=0.09  Score=55.38  Aligned_cols=112  Identities=9%  Similarity=0.022  Sum_probs=69.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC----C--
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP----T--  350 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~----~--  350 (535)
                      ++-.+|+|+|+|.+|...++.|.+. +++|++|+|            .|.+.+.+..+.... .+++....++    .  
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d------------~~~~~~~~~a~~~~~-~g~~~~~~~~~~~~~~~   84 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFAD------------PDPYMVGRAQEILKK-NGKKPAKVFGNGNDDYK   84 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC------------SCHHHHHHHHHHHHH-TTCCCCEEECSSTTTHH
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEe------------CCHHHHHHHHHHHHh-cCCCCCceeccCCCCHH
Confidence            3457999999999999888888774 889999876            455665555442100 0122233343    4  


Q ss_pred             CCcc-ccceEEeecccccccccccccc-cc--ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         351 DIMF-DKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       351 ell~-~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      +++. .++|+++-|+... .+.+-+.. ++  ..++||   -|+  | .++.++   .+++|+.+.
T Consensus        85 ~ll~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~E---KP~a~~~~ea~~l~~~a~~~g~~~~  146 (444)
T 2ixa_A           85 NMLKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGME---VSGAITLEECWDYVKVSEQTGVPLM  146 (444)
T ss_dssp             HHTTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEEC---CCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred             HHhcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHHhCCeEE
Confidence            6775 4799999998643 44444433 33  368888   353  3 355554   356786554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.17  E-value=0.085  Score=46.85  Aligned_cols=108  Identities=10%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC-HHHHHHHHHHc-CCcccCCCCcccCCCCc---
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN-YKDLHTYKITK-GTIKGYPGTKSAPTDIM---  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD-i~~L~~~~~~~-g~v~~~~~a~~i~~ell---  353 (535)
                      ...+|+|.|+|.+|+.+++.|.+.|..|+.|.             -| .+.+....... ..+.-+.+ ...+.+.|   
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid-------------~~~~~~~~~~~~~~~~~~~~i~g-d~~~~~~l~~a   67 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVIS-------------NLPEDDIKQLEQRLGDNADVIPG-DSNDSSVLKKA   67 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEE-------------CCCHHHHHHHHHHHCTTCEEEES-CTTSHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEE-------------CCChHHHHHHHHhhcCCCeEEEc-CCCCHHHHHHc
Confidence            35689999999999999999999999999854             32 23222222211 00110000 00011222   


Q ss_pred             -cccceEEeecccccccc---ccccccc-c-ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         354 -FDKVDILVPAAIEKVIR---KSNADKV-Q-AKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       354 -~~~~DILiPaA~~~~It---~~na~~i-~-AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                       -.++|++|-|......+   ...+.++ . .++|+-. |+|   +..+.|++-|+.
T Consensus        68 ~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~-~~~---~~~~~l~~~G~~  120 (153)
T 1id1_A           68 GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAV-SDS---KNLNKIKMVHPD  120 (153)
T ss_dssp             TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEEC-SSG---GGHHHHHTTCCS
T ss_pred             ChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEE-CCH---HHHHHHHHcCCC
Confidence             24789999887654333   2334444 2 3666643 444   444567787874

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=93.15  E-value=0.76  Score=47.62  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      -.+|.|-|||.+|+.++|.+.+.|.+||+|-|.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            369999999999999999999989999998764

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=93.09  E-value=0.14  Score=51.40  Aligned_cols=69  Identities=12%  Similarity=0.193  Sum_probs=44.5

Q ss_pred             CCcEEEEEccccHHH-HHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         279 ENKTYIVQGFGNVGF-HAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~-~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      +-.+|+|+|+|++|. ..+..|...+++|++|+|.+            .+.+.+..++.+.      ....++  +++. 
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~------------~~~~~~~a~~~~~------~~~~~~~~~ll~~   64 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESD------------SDNRAKFTSLFPS------VPFAASAEQLITD   64 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSC------------TTSCHHHHHHSTT------CCBCSCHHHHHTC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCC------------HHHHHHHHHhcCC------CcccCCHHHHhhC
Confidence            347999999999996 56777777899999998853            2223344444432      222333  4554 


Q ss_pred             ccceEEeeccc
Q psy1913         355 DKVDILVPAAI  365 (535)
Q Consensus       355 ~~~DILiPaA~  365 (535)
                      .++|+++-|+.
T Consensus        65 ~~~D~V~i~tp   75 (336)
T 2p2s_A           65 ASIDLIACAVI   75 (336)
T ss_dssp             TTCCEEEECSC
T ss_pred             CCCCEEEEeCC
Confidence            46788877764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=93.08  E-value=0.19  Score=50.38  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcc-cc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMF-DK  356 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~-~~  356 (535)
                      +-.+|+|.|+|++|...++.|.+ .+.+|++|+|.+            .+.+.+    .|    .+ ...++ ++++ .+
T Consensus         8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~------------~~~~~~----~g----~~-~~~~~-~l~~~~~   65 (304)
T 3bio_A            8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRN------------PAEVPF----EL----QP-FRVVS-DIEQLES   65 (304)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------------------CC----TT-SCEES-SGGGSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCC------------HHHHHH----cC----CC-cCCHH-HHHhCCC
Confidence            35799999999999999999987 578999988743            222211    22    11 11122 3332 58


Q ss_pred             ceEEeeccccccccccccccc---cceEEEecCCCCC----CHHHH---HHHHhCCceee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL----TPAAH---AMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~----T~eA~---~iL~~rGI~vi  406 (535)
                      +|+++-|+.. ..+.+.+...   ...+|+|   -|+    ..++.   +..++.|+.+.
T Consensus        66 ~DvViiatp~-~~h~~~~~~al~aG~~Vi~e---kP~~a~~~~~~~~l~~~a~~~g~~~~  121 (304)
T 3bio_A           66 VDVALVCSPS-REVERTALEILKKGICTADS---FDIHDGILALRRSLGDAAGKSGAAAV  121 (304)
T ss_dssp             CCEEEECSCH-HHHHHHHHHHHTTTCEEEEC---CCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEECCCc-hhhHHHHHHHHHcCCeEEEC---CCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence            9999998853 3344444333   3467877   343    22333   44567787654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.08  E-value=0.12  Score=53.64  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc--cCCCCcccCCCCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK--GYPGTKSAPTDIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~--~~~~a~~i~~ell~  354 (535)
                      ++.|++|.|.|+|.+|..+|+.+...|++|++             .|.+.+.+....+..|.-.  .+.....+. +++ 
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~-------------~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~-~~l-  229 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTV-------------LDINIDKLRQLDAEFCGRIHTRYSSAYELE-GAV-  229 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHTTTSSEEEECCHHHHH-HHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHHHhcCCeeEeccCCHHHHH-HHH-
Confidence            46899999999999999999999999999888             4466777665554333110  000000000 222 


Q ss_pred             ccceEEeeccc
Q psy1913         355 DKVDILVPAAI  365 (535)
Q Consensus       355 ~~~DILiPaA~  365 (535)
                      ..+|++|-|+.
T Consensus       230 ~~aDvVi~~~~  240 (377)
T 2vhw_A          230 KRADLVIGAVL  240 (377)
T ss_dssp             HHCSEEEECCC
T ss_pred             cCCCEEEECCC
Confidence            37899998875

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.07  E-value=0.14  Score=49.21  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.|. |.+|+++|+.|.+.|++|+.             .+.+.+.+.+..++.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~-------------~~r~~~~~~~~~~~~   50 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIV-------------SDINAEGAKAAAASI   50 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHHh
Confidence            478999999985 78999999999999999987             446677776665554

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=93.04  E-value=0.66  Score=47.79  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+.+.|.++   ...||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~   37 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            4899999999999999999886   3899998874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.99  E-value=0.035  Score=56.64  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +++++|+|+|+|++|..+|+.|.+.|.+|+.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~   44 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTV   44 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEE
Confidence            4578999999999999999999999998765

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=92.98  E-value=0.44  Score=42.68  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=59.5

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      -++|+|+|.    |++|+.+++.|.+.|++|+.|        ||++.               .+.   |...++.  ++-
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V--------np~~~---------------~i~---G~~~y~sl~~l~   75 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPKYE---------------EVL---GRKCYPSVLDIP   75 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTCS---------------EET---TEECBSSGGGCS
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE--------CCCCC---------------eEC---CeeccCCHHHcC
Confidence            369999999    799999999999999997764        34330               111   1222222  332


Q ss_pred             cccceEEeeccccccccccccc---cccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         354 FDKVDILVPAAIEKVIRKSNAD---KVQAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~---~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                       .++|+.+-|.... ...+-++   ...++.|+--. +-...++.++++++|+.++
T Consensus        76 -~~vDlvvi~vp~~-~~~~vv~~~~~~gi~~i~~~~-g~~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           76 -DKIEVVDLFVKPK-LTMEYVEQAIKKGAKVVWFQY-NTYNREASKKADEAGLIIV  128 (144)
T ss_dssp             -SCCSEEEECSCHH-HHHHHHHHHHHHTCSEEEECT-TCCCHHHHHHHHHTTCEEE
T ss_pred             -CCCCEEEEEeCHH-HHHHHHHHHHHcCCCEEEECC-CchHHHHHHHHHHcCCEEE
Confidence             3577777665432 1122221   22344555332 3347888899999999986

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=92.97  E-value=0.11  Score=52.26  Aligned_cols=104  Identities=8%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC---CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR---AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G---akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      .+|+|+|+|++|...++.|.+..   ++|++|+|            .|.+...+..++.+.-      ...++  +++. 
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d------------~~~~~a~~~a~~~~~~------~~~~~~~~ll~~   64 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAA------------RDLSRAKEFAQKHDIP------KAYGSYEELAKD   64 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEEC------------SSHHHHHHHHHHHTCS------CEESSHHHHHHC
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEc------------CCHHHHHHHHHHcCCC------cccCCHHHHhcC
Confidence            58999999999999998887653   58999876            4566676766665421      22333  5664 


Q ss_pred             ccceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      .++|+++-|+. +..+.+.+...   ...++||=   |+  | .|++++   .+++|+.+.
T Consensus        65 ~~vD~V~i~tp-~~~H~~~~~~al~~GkhVl~EK---P~a~~~~e~~~l~~~a~~~~~~~~  121 (334)
T 3ohs_X           65 PNVEVAYVGTQ-HPQHKAAVMLCLAAGKAVLCEK---PMGVNAAEVREMVTEARSRGLFLM  121 (334)
T ss_dssp             TTCCEEEECCC-GGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEECCC-cHHHHHHHHHHHhcCCEEEEEC---CCCCCHHHHHHHHHHHHHhCCEEE
Confidence            47899988874 44455444332   23677773   42  2 344443   356676554

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=92.96  E-value=0.16  Score=51.26  Aligned_cols=71  Identities=17%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHH--------CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRR--------GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA  348 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e--------~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i  348 (535)
                      .|+..+|+|+|+|.+|+.-++.+..        .+++||||+|.            |.+.+.+..++.+.      ...+
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~------------~~~~a~~~a~~~g~------~~~y   83 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEA------------NAGLAEARAGEFGF------EKAT   83 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--------------TTHHHHHHHHTC------SEEE
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECC------------CHHHHHHHHHHhCC------Ceec
Confidence            4677899999999999866555533        47899999874            44455566666542      1223


Q ss_pred             CC--CCcc-ccceEEeeccc
Q psy1913         349 PT--DIMF-DKVDILVPAAI  365 (535)
Q Consensus       349 ~~--ell~-~~~DILiPaA~  365 (535)
                      ++  ++|+ .++|+++-|+.
T Consensus        84 ~d~~ell~~~~iDaV~IatP  103 (393)
T 4fb5_A           84 ADWRALIADPEVDVVSVTTP  103 (393)
T ss_dssp             SCHHHHHHCTTCCEEEECSC
T ss_pred             CCHHHHhcCCCCcEEEECCC
Confidence            33  4553 46777776653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.90  E-value=0.17  Score=50.87  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      +.++|.|+|.|++|..+|..|.+.|    ..|+.        ||.+-   +.+.+.++. +.|       ....+.  +.
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v--------~~r~~---~~~~~~~l~-~~G-------~~~~~~~~e~   81 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMA--------SSPDM---DLATVSALR-KMG-------VKLTPHNKET   81 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEE--------ECSCT---TSHHHHHHH-HHT-------CEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEE--------ECCCc---cHHHHHHHH-HcC-------CEEeCChHHH
Confidence            3468999999999999999999999    56654        22221   101333332 222       222222  32


Q ss_pred             ccccceEEeeccccccccc---ccccccc-ceEEEecCCCCCCHHHHHHHHh
Q psy1913         353 MFDKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPLTPAAHAMLLK  400 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~T~eA~~iL~~  400 (535)
                      . .+|||+|-|.....+.+   +-.+.++ -++|+.-+|+-...+..+.|.+
T Consensus        82 ~-~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~  132 (322)
T 2izz_A           82 V-QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA  132 (322)
T ss_dssp             H-HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred             h-ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhh
Confidence            2 47999999987543322   1222333 3689998887544455566765

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=92.88  E-value=0.73  Score=46.66  Aligned_cols=108  Identities=17%  Similarity=0.261  Sum_probs=69.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFD  355 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~  355 (535)
                      ..++++|.|.|..|+..++.|.+ .+.+.|.|.|            .+.+...+..++.+.. ++ ... .+.  +.+  
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~------------r~~~~a~~la~~~~~~-~~-~~~-~~~~~e~v--  186 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYD------------VREKAAKKFVSYCEDR-GI-SAS-VQPAEEAS--  186 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEEC------------SSHHHHHHHHHHHHHT-TC-CEE-ECCHHHHT--
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEEC------------CCHHHHHHHHHHHHhc-Cc-eEE-ECCHHHHh--
Confidence            57899999999999999998887 4666666554            4556666655443210 01 122 333  444  


Q ss_pred             cceEEeeccccc--cccccccccc--cceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         356 KVDILVPAAIEK--VIRKSNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       356 ~~DILiPaA~~~--~It~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      +|||++-|+...  ++..   ..+  .+-+++.|+..|...|.+.-+.+++..|+
T Consensus       187 ~aDvVi~aTp~~~pv~~~---~~l~~G~~V~~ig~~~p~~~el~~~~~~~a~v~v  238 (322)
T 1omo_A          187 RCDVLVTTTPSRKPVVKA---EWVEEGTHINAIGADGPGKQELDVEILKKAKIVV  238 (322)
T ss_dssp             SSSEEEECCCCSSCCBCG---GGCCTTCEEEECSCCSTTCCCBCHHHHHTEEEEE
T ss_pred             CCCEEEEeeCCCCceecH---HHcCCCeEEEECCCCCCCccccCHHHHhcCeEEE
Confidence            799999998743  2221   233  35788899999976665555566665444

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=92.78  E-value=0.27  Score=49.78  Aligned_cols=105  Identities=11%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             CcEEEEEccccHHHH-HHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         280 NKTYIVQGFGNVGFH-AARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~-~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      -.+|+|+|+|.+|.. .+..|.+. +++|++|+|.            |.+.+.   +      .+++...+++  +++. 
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~------------~~~~~~---~------~~~~~~~~~~~~~ll~~   65 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS------------DASKVH---A------DWPAIPVVSDPQMLFND   65 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS------------CHHHHH---T------TCSSCCEESCHHHHHHC
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECC------------CHHHHH---h------hCCCCceECCHHHHhcC
Confidence            379999999999986 67777765 8999999864            344332   1      2334444454  5664 


Q ss_pred             ccceEEeecccccccccccccc-cc--ceEEEecCCCCCCHHHHHH---HHhCCceee
Q psy1913         355 DKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPLTPAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~T~eA~~i---L~~rGI~vi  406 (535)
                      .++|+++-|+ ++..+.+-+.. ++  ..++||=-=.....+++++   .+++|+.+.
T Consensus        66 ~~vD~V~i~t-p~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~  122 (352)
T 3kux_A           66 PSIDLIVIPT-PNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS  122 (352)
T ss_dssp             SSCCEEEECS-CTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEeC-ChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            4689888887 44444444332 22  2577763111112344443   346666554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=92.75  E-value=0.068  Score=56.30  Aligned_cols=107  Identities=13%  Similarity=0.024  Sum_probs=68.5

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--C
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--D  351 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--e  351 (535)
                      -.+|+|+|+    |.+|...++.|.+.  +++||+|+|            .|.+.+.+..++.|.    +.....+.  +
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d------------~~~~~~~~~a~~~g~----~~~~~~~~~~~   83 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYS------------PKIETSIATIQRLKL----SNATAFPTLES   83 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEEC------------SSHHHHHHHHHHTTC----TTCEEESSHHH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEe------------CCHHHHHHHHHHcCC----CcceeeCCHHH
Confidence            479999999    99999888888876  889999876            556666666666541    11223344  6


Q ss_pred             Ccc-ccceEEeeccccccccccccc-ccc--------ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         352 IMF-DKVDILVPAAIEKVIRKSNAD-KVQ--------AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       352 ll~-~~~DILiPaA~~~~It~~na~-~i~--------AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      ++. .++|+++-|+... .+.+.+. -++        ..++||=   |+  | .+++++   .+++|+.+.
T Consensus        84 ll~~~~vD~V~i~tp~~-~H~~~~~~al~aG~~~~~~khVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~  150 (438)
T 3btv_A           84 FASSSTIDMIVIAIQVA-SHYEVVMPLLEFSKNNPNLKYLFVEW---ALACSLDQAESIYKAAAERGVQTI  150 (438)
T ss_dssp             HHHCSSCSEEEECSCHH-HHHHHHHHHHHHGGGCTTCCEEEEES---SCCSSHHHHHHHHHHHHTTTCEEE
T ss_pred             HhcCCCCCEEEEeCCcH-HHHHHHHHHHHCCCCcccceeEEecC---cccCCHHHHHHHHHHHHHcCCeEE
Confidence            664 4799999987533 3333332 222        3488882   42  2 344443   456777654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.72  E-value=0.062  Score=57.61  Aligned_cols=119  Identities=8%  Similarity=0.126  Sum_probs=65.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-----
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-----  350 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-----  350 (535)
                      ++++++|+|.|.|.+|+.+++.|.+. |.+|+. ++            -+.+.+.+..+..+ +... .. .+++     
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v-~~------------R~~~ka~~la~~~~-~~~~-~~-D~~d~~~l~   83 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTV-AC------------RTLANAQALAKPSG-SKAI-SL-DVTDDSALD   83 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEE-EE------------SSHHHHHHHHGGGT-CEEE-EC-CTTCHHHHH
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEE-EE------------CCHHHHHHHHHhcC-CcEE-EE-ecCCHHHHH
Confidence            46889999999999999999999998 677554 33            44555555543321 1000 00 0111     


Q ss_pred             CCccccceEEeecccccccccccc-cccc--ceEEEecCCCCCCHHHHHHHHhCCceeeccccccc
Q psy1913         351 DIMFDKVDILVPAAIEKVIRKSNA-DKVQ--AKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       351 ell~~~~DILiPaA~~~~It~~na-~~i~--AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNa  413 (535)
                      +++ .++|++|-|+.... +..-+ ..+.  ..++......|.+.+..+..+++|+.+++..-.+.
T Consensus        84 ~~l-~~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~P  147 (467)
T 2axq_A           84 KVL-ADNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDP  147 (467)
T ss_dssp             HHH-HTSSEEEECSCGGG-HHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBTT
T ss_pred             HHH-cCCCEEEECCchhh-hHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcCc
Confidence            122 37999999987442 22111 1122  23333222233333334556788998887765443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.72  E-value=0.14  Score=52.78  Aligned_cols=75  Identities=19%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc-c-cCCCCcccCCCCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI-K-GYPGTKSAPTDIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v-~-~~~~a~~i~~ell~  354 (535)
                      ++.+++|.|.|+|.+|..+++.+...|++|++             .|.+.+.+....+..|.- . .......+. +++ 
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~-------------~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~-~~~-  227 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTI-------------LDVNHKRLQYLDDVFGGRVITLTATEANIK-KSV-  227 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHTTTSEEEEECCHHHHH-HHH-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHHhcCceEEEecCCHHHHH-HHH-
Confidence            47889999999999999999999999999888             446677666554433310 0 000000000 222 


Q ss_pred             ccceEEeecccc
Q psy1913         355 DKVDILVPAAIE  366 (535)
Q Consensus       355 ~~~DILiPaA~~  366 (535)
                      ..+|++|-|+..
T Consensus       228 ~~~DvVi~~~g~  239 (369)
T 2eez_A          228 QHADLLIGAVLV  239 (369)
T ss_dssp             HHCSEEEECCC-
T ss_pred             hCCCEEEECCCC
Confidence            378999998863

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=92.71  E-value=0.18  Score=55.19  Aligned_cols=177  Identities=11%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCch
Q psy1913         172 YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESAT  251 (535)
Q Consensus       172 ~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aT  251 (535)
                      .+-.|...+...|+.++..  .+||..-|-=.|++..  .---|.+.|+..        .-|+-.+          -.-|
T Consensus       206 v~g~eYd~fvdefv~av~~--~fG~~~~I~~EDf~~~--~af~il~ryr~~--------ipvFnDD----------iqGT  263 (564)
T 1pj3_A          206 DRTQQYDDLIDEFMKAITD--RYGRNTLIQFEDFGNH--NAFRFLRKYREK--------YCTFNDD----------IQGT  263 (564)
T ss_dssp             CCSHHHHHHHHHHHHHHHH--HHCTTCEEEECSCCHH--HHHHHHHHHTTT--------SSEEEHH----------HHHH
T ss_pred             CchhhHHHHHHHHHHHHHH--HcCCCcEEeehhcCCc--cHHHHHHHhccC--------CCEeCCC----------CchH
Confidence            4667888899999999886  6888887888888743  233456777541        1233222          1234


Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH----CCC------eEEEEecCCceEeCCCC
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR----GRA------KCLAIVEHDTAIVPDKG  321 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e----~Ga------kVVaVsD~~G~iynp~G  321 (535)
                      |-=+..++.++      ++..|.  .|+..||++.|.|..|..+|++|..    .|.      +=+-+.|++|-|+...+
T Consensus       264 a~V~lAgllnA------lki~gk--~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~  335 (564)
T 1pj3_A          264 AAVALAGLLAA------QKVISK--PISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRK  335 (564)
T ss_dssp             HHHHHHHHHHH------HHHHCC--CGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCS
T ss_pred             HHHHHHHHHHH------HHHhCC--cHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEEeCCCeEECCCc
Confidence            44444445533      345674  4899999999999999999999986    784      45678999999998653


Q ss_pred             CCCCHHHHHHHHHHcCCcccCCCCccc--CC--CCc-cccceEEeeccc-ccccccccccccc----ceEEEecCCC
Q psy1913         322 TEINYKDLHTYKITKGTIKGYPGTKSA--PT--DIM-FDKVDILVPAAI-EKVIRKSNADKVQ----AKIIVEAANG  388 (535)
Q Consensus       322 ~dLDi~~L~~~~~~~g~v~~~~~a~~i--~~--ell-~~~~DILiPaA~-~~~It~~na~~i~----AkiIvEgAN~  388 (535)
                      .||+..     ++..-   .  .....  ..  +.+ .+++||||=++. ++++|++-+..+.    -.||---||-
T Consensus       336 ~~l~~~-----k~~~A---~--~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  402 (564)
T 1pj3_A          336 AKIDSY-----QEPFT---H--SAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP  402 (564)
T ss_dssp             SCCCTT-----TGGGC---B--CCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             ccchHH-----HHHHH---H--hcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            125532     22110   0  00011  12  333 358999999996 8999999998885    4888888883

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=92.70  E-value=0.028  Score=56.21  Aligned_cols=103  Identities=16%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      -.+|+|+|+|++|...++.|.+. +.++++|+|.            |.+.+.+..++         ....+.  +++. .
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~------------~~~~~~~~~~~---------~~~~~~~~~~l~~~   68 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASS------------NPDNLALVPPG---------CVIESDWRSVVSAP   68 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEES------------CHHHHTTCCTT---------CEEESSTHHHHTCT
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeC------------CHHHHHHHHhh---------CcccCCHHHHhhCC
Confidence            36999999999999999999885 7899998774            33333221111         112232  5664 5


Q ss_pred             cceEEeecccccccccccccc-ccc--eEEEecCCCCC--C-HHHHHH---HHhCCceeec
Q psy1913         356 KVDILVPAAIEKVIRKSNADK-VQA--KIIVEAANGPL--T-PAAHAM---LLKKNVLIIP  407 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~-i~A--kiIvEgAN~p~--T-~eA~~i---L~~rGI~viP  407 (535)
                      ++|+++-|.... .+.+.+.. +++  .+++|-   |+  + .++.++   .+++|+.+..
T Consensus        69 ~~D~V~i~tp~~-~h~~~~~~al~~Gk~v~~eK---P~~~~~~~~~~l~~~a~~~g~~~~~  125 (315)
T 3c1a_A           69 EVEAVIIATPPA-THAEITLAAIASGKAVLVEK---PLTLDLAEAEAVAAAAKATGVMVWV  125 (315)
T ss_dssp             TCCEEEEESCGG-GHHHHHHHHHHTTCEEEEES---SSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             CCCEEEEeCChH-HHHHHHHHHHHCCCcEEEcC---CCcCCHHHHHHHHHHHHHcCCEEEE
Confidence            899999887543 34444433 332  577773   42  3 234433   4566765543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.68  E-value=0.11  Score=50.49  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=28.9

Q ss_pred             CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVa  308 (535)
                      +|+||++.|.|.+   -+|..+|+.|++.|++|+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi   37 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVF   37 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            4799999999964   5999999999999999887

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=92.64  E-value=0.23  Score=47.80  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|+|++|..+|+.|.+.|..|+. .|       ++   -+.+.+.+..+. |       .. -+. +++ .+||+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~-~~-------~~---~~~~~~~~~~~~-g-------~~-~~~~~~~-~~aDv   59 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVT-SL-------EG---RSPSTIERARTV-G-------VT-ETSEEDV-YSCPV   59 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE-CC-------TT---CCHHHHHHHHHH-T-------CE-ECCHHHH-HTSSE
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEE-eC-------Cc---cCHHHHHHHHHC-C-------Cc-CCHHHHH-hcCCE
Confidence            3799999999999999999999998876 22       11   134444444332 2       11 122 333 48999


Q ss_pred             Eeecccccccccc---ccccccceEEEecCCCCC--CHHHHHHHHhCC
Q psy1913         360 LVPAAIEKVIRKS---NADKVQAKIIVEAANGPL--TPAAHAMLLKKN  402 (535)
Q Consensus       360 LiPaA~~~~It~~---na~~i~AkiIvEgAN~p~--T~eA~~iL~~rG  402 (535)
                      +|-|.........   -.+.++. +|+.-+....  +.+..+.|.++|
T Consensus        60 vi~~v~~~~~~~~~~~~~~~~~~-~vi~~s~~~~~~~~~l~~~~~~~g  106 (264)
T 1i36_A           60 VISAVTPGVALGAARRAGRHVRG-IYVDINNISPETVRMASSLIEKGG  106 (264)
T ss_dssp             EEECSCGGGHHHHHHHHHTTCCS-EEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             EEEECCCHHHHHHHHHHHHhcCc-EEEEccCCCHHHHHHHHHHHhhCC
Confidence            9999876543222   1223334 8887754431  223444555555

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=92.56  E-value=0.093  Score=54.10  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             cEEEEEccc-cHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         281 KTYIVQGFG-NVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       281 ~~VaIQGfG-nVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      .+|+|+|+| .+|...+..|.+ .+++|++|+|            .|.+...+..++.|       ...+++  +++. .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~a~~~g-------~~~~~~~~ell~~~   63 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACD------------PNEDVRERFGKEYG-------IPVFATLAEMMQHV   63 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEEC------------SCHHHHHHHHHHHT-------CCEESSHHHHHHHS
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEe------------CCHHHHHHHHHHcC-------CCeECCHHHHHcCC
Confidence            689999999 899888888877 4789999876            55666666666553       222334  5665 4


Q ss_pred             cceEEeeccccccccccccccc---cceEEEe
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV---QAKIIVE  384 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i---~AkiIvE  384 (535)
                      ++|+++-|+.. ..+.+.+...   ...++||
T Consensus        64 ~vD~V~i~tp~-~~H~~~~~~al~aGk~Vl~E   94 (387)
T 3moi_A           64 QMDAVYIASPH-QFHCEHVVQASEQGLHIIVE   94 (387)
T ss_dssp             CCSEEEECSCG-GGHHHHHHHHHHTTCEEEEC
T ss_pred             CCCEEEEcCCc-HHHHHHHHHHHHCCCceeee
Confidence            78999988754 3344333322   2356666

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.51  E-value=0.16  Score=50.31  Aligned_cols=28  Identities=21%  Similarity=0.103  Sum_probs=26.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~   43 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVL   43 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence            5899999999999999999999999887

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=92.46  E-value=0.67  Score=48.59  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+++.|.++   ...||+|.|.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~   37 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT   37 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC
Confidence            4899999999999999999886   4899999874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.45  E-value=0.45  Score=47.46  Aligned_cols=104  Identities=13%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      ++++.|.|.|.+|+.++..|.+.|.+|+ |.+++       -     ++..++. +.+       ...++. ++ . ++|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~-V~nRt-------~-----~ka~~la-~~~-------~~~~~~~~l-~-~~D  174 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVS-VLNRS-------S-----RGLDFFQ-RLG-------CDCFMEPPK-S-AFD  174 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS-------C-----TTHHHHH-HHT-------CEEESSCCS-S-CCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC-------H-----HHHHHHH-HCC-------CeEecHHHh-c-cCC
Confidence            7899999999999999999999996654 44432       1     2222333 222       122222 33 2 899


Q ss_pred             EEeecccccc-----ccccccc-cc-cceEEEecCCCCCCHHHHHHHHhCCceeec
Q psy1913         359 ILVPAAIEKV-----IRKSNAD-KV-QAKIIVEAANGPLTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       359 ILiPaA~~~~-----It~~na~-~i-~AkiIvEgAN~p~T~eA~~iL~~rGI~viP  407 (535)
                      |+|-|+.-+.     +..+-.. .+ ...+|++-.=+|.|+ --+..+++|+.+++
T Consensus       175 iVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P~T~-ll~~A~~~G~~~~~  229 (269)
T 3phh_A          175 LIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTP-FLSLAKELKTPFQD  229 (269)
T ss_dssp             EEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSSCCH-HHHHHHHTTCCEEC
T ss_pred             EEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCCchH-HHHHHHHCcCEEEC
Confidence            9997766442     2222000 23 246888888888555 33445788876543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=92.43  E-value=0.26  Score=49.77  Aligned_cols=106  Identities=10%  Similarity=0.094  Sum_probs=69.6

Q ss_pred             CCcEEEEEccc-cHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQGFG-NVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfG-nVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      +-.+|+|+|+| .+|...+..|.+.  +++|++|+|            .|.+.+.+..++.+.      ...+++  +++
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d------------~~~~~~~~~a~~~~~------~~~~~~~~~ll   78 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS------------RTRSHAEEFAKMVGN------PAVFDSYEELL   78 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEEC------------SSHHHHHHHHHHHSS------CEEESCHHHHH
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEc------------CCHHHHHHHHHHhCC------CcccCCHHHHh
Confidence            45799999999 7999888888775  689999876            566777777766542      123344  566


Q ss_pred             c-ccceEEeecccccccccccccc-cc--ceEEEecCCCCC--C-HHHHHHH---HhCCceee
Q psy1913         354 F-DKVDILVPAAIEKVIRKSNADK-VQ--AKIIVEAANGPL--T-PAAHAML---LKKNVLII  406 (535)
Q Consensus       354 ~-~~~DILiPaA~~~~It~~na~~-i~--AkiIvEgAN~p~--T-~eA~~iL---~~rGI~vi  406 (535)
                      . .++|+++-|+.. ..+.+-+.. ++  ..++||   -|+  | .|+++++   +++|+.+.
T Consensus        79 ~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~E---KPla~~~~ea~~l~~~a~~~g~~~~  137 (340)
T 1zh8_A           79 ESGLVDAVDLTLPV-ELNLPFIEKALRKGVHVICE---KPISTDVETGKKVVELSEKSEKTVY  137 (340)
T ss_dssp             HSSCCSEEEECCCG-GGHHHHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHCSSCEE
T ss_pred             cCCCCCEEEEeCCc-hHHHHHHHHHHHCCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            4 479999998753 344444332 22  368888   352  3 4555543   56776654

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=92.29  E-value=0.73  Score=47.41  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=28.4

Q ss_pred             cEEEEEccccHHHHHHHHHHH---C-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR---G-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e---~-GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+.+.|.+   + ...||+|.|.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~   38 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL   38 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC
Confidence            489999999999999999988   4 7899998863

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.28  E-value=0.78  Score=47.08  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|.|||-+|+.+.|.|.++   ...||+|.|.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~   35 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC
Confidence            4799999999999999999875   5899999873

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=92.27  E-value=0.21  Score=51.66  Aligned_cols=67  Identities=18%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---------CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---------RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---------GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      .||+|+|+|.+|+.-++.|.+.         +++||||+|            .|.+.+.+..++.+..      ..+++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d------------~~~~~a~~~a~~~~~~------~~y~d~   88 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALAD------------QDQAMAERHAAKLGAE------KAYGDW   88 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEEC------------SSHHHHHHHHHHHTCS------EEESSH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEc------------CCHHHHHHHHHHcCCC------eEECCH
Confidence            6999999999999877777653         679999975            6677887777776522      22333 


Q ss_pred             -CCcc-ccceEEeeccc
Q psy1913         351 -DIMF-DKVDILVPAAI  365 (535)
Q Consensus       351 -ell~-~~~DILiPaA~  365 (535)
                       ++|. .++|+++-|+.
T Consensus        89 ~~ll~~~~vD~V~I~tp  105 (412)
T 4gqa_A           89 RELVNDPQVDVVDITSP  105 (412)
T ss_dssp             HHHHHCTTCCEEEECSC
T ss_pred             HHHhcCCCCCEEEECCC
Confidence             5553 46777776653

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.26  E-value=1.4  Score=43.71  Aligned_cols=126  Identities=17%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD  328 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~  328 (535)
                      .--+.|...+++          ..|..   .+++|.|.|.|.+|+.++..|.+.|++-|.|.+            -+.++
T Consensus       101 NTD~~G~~~~l~----------~~~~~---~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n------------Rt~~k  155 (271)
T 1npy_A          101 NTDYIAIVKLIE----------KYHLN---KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA------------RNVKT  155 (271)
T ss_dssp             CHHHHHHHHHHH----------HTTCC---TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC------------SCHHH
T ss_pred             cCCHHHHHHHHH----------HhCCC---CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe------------CCHHH
Confidence            345677766665          23442   578999999999999999999999985444443            34455


Q ss_pred             HHHHHHHcCCcccCCCCcccCCCCccccceEEeeccccccccc---cc--c--ccc-cceEEEecCCCC-CCHHHHHHHH
Q psy1913         329 LHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVIRK---SN--A--DKV-QAKIIVEAANGP-LTPAAHAMLL  399 (535)
Q Consensus       329 L~~~~~~~g~v~~~~~a~~i~~ell~~~~DILiPaA~~~~It~---~n--a--~~i-~AkiIvEgAN~p-~T~eA~~iL~  399 (535)
                      ..++.++.+.       . +..++-..++||+|-|+.-+....   +.  .  ..+ ...+|++-.-+| -|+- .+.-+
T Consensus       156 a~~la~~~~~-------~-~~~~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T~l-l~~A~  226 (271)
T 1npy_A          156 GQYLAALYGY-------A-YINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPF-IRYAQ  226 (271)
T ss_dssp             HHHHHHHHTC-------E-EESCCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHH-HHHHH
T ss_pred             HHHHHHHcCC-------c-cchhhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCCHH-HHHHH
Confidence            5555554431       1 111111247999999987554221   11  1  223 247899999888 4643 34457


Q ss_pred             hCCceeecc
Q psy1913         400 KKNVLIIPD  408 (535)
Q Consensus       400 ~rGI~viPD  408 (535)
                      ++|+.+++.
T Consensus       227 ~~G~~~i~G  235 (271)
T 1npy_A          227 ARGKQTISG  235 (271)
T ss_dssp             HTTCEEECH
T ss_pred             HCCCEEECC
Confidence            889877543

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=92.21  E-value=0.85  Score=47.04  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=28.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHC----CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG----RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~----GakVVaVsD~  312 (535)
                      .+|+|-|||-+|+.+.+.|.+.    ...||+|.|.
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~   37 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC
Confidence            4899999999999999999887    5799999984

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=92.20  E-value=0.49  Score=42.48  Aligned_cols=109  Identities=16%  Similarity=0.246  Sum_probs=64.7

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      -++|+|+|.    |+.|+.+++.|.+.|++|..        +||+.  .           ...+.   |...++.  ++-
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~--------vnp~~--~-----------g~~i~---G~~~~~sl~el~   68 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIP--------VSPKV--A-----------GKTLL---GQQGYATLADVP   68 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEE--------ECSSS--T-----------TSEET---TEECCSSTTTCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEE--------eCCcc--c-----------ccccC---CeeccCCHHHcC
Confidence            368999999    89999999999999998665        33432  0           00111   2222222  332


Q ss_pred             cccceEEeecccccccccccccc---ccce-EEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchh
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADK---VQAK-IIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS  419 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~---i~Ak-iIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivS  419 (535)
                       .++|+.+-|.... ...+-+..   ..++ +++..  +-.+.+..++++++|+.++   =-|+=|++..
T Consensus        69 -~~~Dlvii~vp~~-~v~~v~~~~~~~g~~~i~i~~--~~~~~~l~~~a~~~Gi~~i---gpnc~g~~~~  131 (145)
T 2duw_A           69 -EKVDMVDVFRNSE-AAWGVAQEAIAIGAKTLWLQL--GVINEQAAVLAREAGLSVV---MDRCPAIELP  131 (145)
T ss_dssp             -SCCSEEECCSCST-HHHHHHHHHHHHTCCEEECCT--TCCCHHHHHHHHTTTCEEE---CSCCHHHHST
T ss_pred             -CCCCEEEEEeCHH-HHHHHHHHHHHcCCCEEEEcC--ChHHHHHHHHHHHcCCEEE---cCCeeeEEcc
Confidence             3678888776532 22222221   1222 55543  2347888899999999987   1355565554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=92.11  E-value=0.11  Score=53.08  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             CCCC--cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CC
Q psy1913         277 CMEN--KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DI  352 (535)
Q Consensus       277 ~l~g--~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--el  352 (535)
                      +++|  ++|+|.|.|.||+.+|++|.+. ..|..             +|++.+.+.+.++....+ ..    .+++  ++
T Consensus        11 ~~~g~~mkilvlGaG~vG~~~~~~L~~~-~~v~~-------------~~~~~~~~~~~~~~~~~~-~~----d~~d~~~l   71 (365)
T 3abi_A           11 HIEGRHMKVLILGAGNIGRAIAWDLKDE-FDVYI-------------GDVNNENLEKVKEFATPL-KV----DASNFDKL   71 (365)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHTTT-SEEEE-------------EESCHHHHHHHTTTSEEE-EC----CTTCHHHH
T ss_pred             cccCCccEEEEECCCHHHHHHHHHHhcC-CCeEE-------------EEcCHHHHHHHhccCCcE-EE----ecCCHHHH
Confidence            3455  5899999999999999999764 56554             347777766553221100 00    0122  22


Q ss_pred             c--cccceEEeeccccccccccccccc-cc-eEEEecCCCC-CCHHHHHHHHhCCceeecccc
Q psy1913         353 M--FDKVDILVPAAIEKVIRKSNADKV-QA-KIIVEAANGP-LTPAAHAMLLKKNVLIIPDIF  410 (535)
Q Consensus       353 l--~~~~DILiPaA~~~~It~~na~~i-~A-kiIvEgAN~p-~T~eA~~iL~~rGI~viPD~l  410 (535)
                      .  -.++||+|-|+... .+..-+... ++ +-++..+--+ .+.+.++...++|+.++|+.=
T Consensus        72 ~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G  133 (365)
T 3abi_A           72 VEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAG  133 (365)
T ss_dssp             HHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCB
T ss_pred             HHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCC
Confidence            2  24899999988654 333222211 11 3344444333 445667778899999998753

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=92.11  E-value=0.12  Score=51.63  Aligned_cols=115  Identities=14%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-CCcccCC--CC
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-GTKSAPT--DI  352 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-~a~~i~~--el  352 (535)
                      ++-.+|+|.| +|.+|+.+++.+.+ .+..+|++.|.++.-  ..|  .|+.++.          +.. +....++  ++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~--~~G--~d~gel~----------g~~~gv~v~~dl~~l   70 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP--QLG--QDAGAFL----------GKQTGVALTDDIERV   70 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT--TTT--SBTTTTT----------TCCCSCBCBCCHHHH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc--ccc--ccHHHHh----------CCCCCceecCCHHHH
Confidence            3447999999 99999999998876 588999999876431  135  4433322          221 2222223  44


Q ss_pred             ccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHH----hCCceeecccc
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLL----KKNVLIIPDIF  410 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~----~rGI~viPD~l  410 (535)
                      +. ++||+|-++..... .+|+...   ..++|++ .=+ .+++..+.|.    +.++++.|-+.
T Consensus        71 l~-~~DVVIDfT~p~a~-~~~~~~al~~G~~vVig-TTG-~s~~~~~~L~~aa~~~~vv~a~N~s  131 (272)
T 4f3y_A           71 CA-EADYLIDFTLPEGT-LVHLDAALRHDVKLVIG-TTG-FSEPQKAQLRAAGEKIALVFSANMS  131 (272)
T ss_dssp             HH-HCSEEEECSCHHHH-HHHHHHHHHHTCEEEEC-CCC-CCHHHHHHHHHHTTTSEEEECSCCC
T ss_pred             hc-CCCEEEEcCCHHHH-HHHHHHHHHcCCCEEEE-CCC-CCHHHHHHHHHHhccCCEEEECCCC
Confidence            54 79999999865433 3444333   3467763 323 5665444343    33566666554

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=92.01  E-value=0.47  Score=48.79  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+++.|.+. +.+||+|.|.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~   36 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDP   36 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECC
Confidence            5899999999999999999886 7899999873

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=91.99  E-value=0.12  Score=52.61  Aligned_cols=106  Identities=10%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             CCcEEEEEccccHHHH-HHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGFH-AARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~-~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +-.+|+|+|+|++|.. .+..|.+. +++|++|+|.            |.+.   ..++.      ++...+++  +++.
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~------------~~~~---~~~~~------~~~~~~~~~~~ll~   62 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTS------------RTEE---VKRDF------PDAEVVHELEEITN   62 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECS------------CHHH---HHHHC------TTSEEESSTHHHHT
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcC------------CHHH---HHhhC------CCCceECCHHHHhc
Confidence            3479999999999985 67777664 8999999864            3333   22232      23343444  5664


Q ss_pred             -ccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceee
Q psy1913         355 -DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 -~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~vi  406 (535)
                       .++|+++-|+.. ..+.+-+...   ...++||=-=.....+++++   .+++|+.+.
T Consensus        63 ~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~  120 (358)
T 3gdo_A           63 DPAIELVIVTTPS-GLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLS  120 (358)
T ss_dssp             CTTCCEEEECSCT-TTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCEEEEcCCc-HHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence             578999988753 3444433322   23677763111112344443   345566544

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=91.96  E-value=0.76  Score=47.22  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|.|||-+|+.+.|.|.++ ...||+|.|.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            4899999999999999999876 6899999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.95  E-value=0.6  Score=46.97  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~  207 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFA  207 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEe
Confidence            58999999999999999999999999999853

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=91.91  E-value=0.2  Score=51.26  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CcEEEEEccccHHHH-HHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         280 NKTYIVQGFGNVGFH-AARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~-~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      -.+|+|+|+|.+|.. .+..|.+. +++|++|+|.            |.+.+.   ++      |++...+++  +++. 
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~------------~~~~~~---~~------~~~~~~~~~~~~ll~~   65 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR------------DEEKVK---RD------LPDVTVIASPEAAVQH   65 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS------------CHHHHH---HH------CTTSEEESCHHHHHTC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcC------------CHHHHH---hh------CCCCcEECCHHHHhcC
Confidence            469999999999985 67777664 8999998864            344332   22      233444444  5664 


Q ss_pred             ccceEEeeccccccccccccccc-c--ceEEEe
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV-Q--AKIIVE  384 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i-~--AkiIvE  384 (535)
                      .++|+++-|+. +..+.+.+... +  ..++||
T Consensus        66 ~~~D~V~i~tp-~~~H~~~~~~al~aGk~Vl~E   97 (364)
T 3e82_A           66 PDVDLVVIASP-NATHAPLARLALNAGKHVVVD   97 (364)
T ss_dssp             TTCSEEEECSC-GGGHHHHHHHHHHTTCEEEEC
T ss_pred             CCCCEEEEeCC-hHHHHHHHHHHHHCCCcEEEe
Confidence            57888888864 33444433322 2  356665

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.89  E-value=0.059  Score=57.56  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCCCCc----
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPTDIM----  353 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~ell----  353 (535)
                      .++|+|.|+|.||+++|+.|.+.|..|+.|             |-|.+.+.++.++.+-  +.+  .+.  ++++|    
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vI-------------d~d~~~~~~~~~~~~~~~i~G--d~~--~~~~L~~Ag   65 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIV-------------DKDGDRLRELQDKYDLRVVNG--HAS--HPDVLHEAG   65 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEE-------------ESCHHHHHHHHHHSSCEEEES--CTT--CHHHHHHHT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEE-------------ECCHHHHHHHHHhcCcEEEEE--cCC--CHHHHHhcC
Confidence            578999999999999999999999998873             3677777777665431  111  111  11333    


Q ss_pred             cccceEEeeccccc
Q psy1913         354 FDKVDILVPAAIEK  367 (535)
Q Consensus       354 ~~~~DILiPaA~~~  367 (535)
                      -.+||+||-++-.+
T Consensus        66 i~~ad~~ia~t~~D   79 (461)
T 4g65_A           66 AQDADMLVAVTNTD   79 (461)
T ss_dssp             TTTCSEEEECCSCH
T ss_pred             CCcCCEEEEEcCCh
Confidence            25899999776643

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=91.85  E-value=0.6  Score=50.23  Aligned_cols=171  Identities=11%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             HHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCCCchHHHHHHHHHHH
Q psy1913         183 KFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRESATGRGVFTAAEIL  262 (535)
Q Consensus       183 ~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~~aTg~GV~~~i~~~  262 (535)
                      .++..+.+.  +|   -|-=.|++...  ---|.+.|+.....      -|+-.+          -.-||-=+..++.++
T Consensus       153 e~v~~~~P~--fG---~InlEDf~ap~--af~il~ryr~~~~i------pvFnDD----------~qGTA~V~lAgllnA  209 (487)
T 3nv9_A          153 EFVQRIQHT--FG---AINLEDISQPN--CYKILDVLRESCDI------PVWHDD----------QQGTASVTLAGLLNA  209 (487)
T ss_dssp             HHHHHHGGG--CS---EEEECSCCTTH--HHHHHHHHHHHCSS------CEEETT----------THHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC--CC---eecHhhcCCch--HHHHHHHHHhhccC------Cccccc----------cchHHHHHHHHHHHH
Confidence            467777752  22   14557777543  23456777653221      122221          223444444455544


Q ss_pred             HhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHH----HHHHHHHHc
Q psy1913         263 VNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYK----DLHTYKITK  336 (535)
Q Consensus       263 l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~----~L~~~~~~~  336 (535)
                      +      +..|.  +|+..||+|.|.|..|..+|++|...|.  +=+-+.|++|.|+.... |++..    .-.++.+.+
T Consensus       210 l------ki~gk--~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~-~l~~~~~~~~k~~~A~~~  280 (487)
T 3nv9_A          210 L------KLVKK--DIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGRE-DIKKDTRFYRKWEICETT  280 (487)
T ss_dssp             H------HHHTC--CGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCH-HHHHCGGGHHHHHHHHHS
T ss_pred             H------HHhCC--ChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcc-hhhhhcccHHHHHHHHhc
Confidence            3      45664  4899999999999999999999999998  56678999999997552 23110    001112221


Q ss_pred             CCcccCCCCcccCC--CCccccceEEeeccc--cccccccccccccc-eEEEecCCCC--CCHH
Q psy1913         337 GTIKGYPGTKSAPT--DIMFDKVDILVPAAI--EKVIRKSNADKVQA-KIIVEAANGP--LTPA  393 (535)
Q Consensus       337 g~v~~~~~a~~i~~--ell~~~~DILiPaA~--~~~It~~na~~i~A-kiIvEgAN~p--~T~e  393 (535)
                      .       ......  +.+. .+||||=++.  .+++|++-+..+.. .||---||--  +|||
T Consensus       281 n-------~~~~~~L~eav~-~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe  336 (487)
T 3nv9_A          281 N-------PSKFGSIAEACV-GADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPY  336 (487)
T ss_dssp             C-------TTCCCSHHHHHT-TCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHH
T ss_pred             c-------cccCCCHHHHHh-cCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHH
Confidence            1       001111  3333 3599999994  58999999988854 6777778752  4554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.79  E-value=1.6  Score=46.74  Aligned_cols=42  Identities=10%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      .++|+|.|.|.||..+|..|++.|..|++             -|.|.+.+..+.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~-------------~d~~~~~v~~l~~   49 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFC-------------LDVDQAKIDILNN   49 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHT
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHC
Confidence            47999999999999999999999999998             4467666666544

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=91.78  E-value=0.14  Score=49.20  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=37.8

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.| .|-+|+++|+.|++.|++|+.+             |.+.+.+.+..++.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~-------------~r~~~~~~~~~~~~   52 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIA-------------DIDIERARQAAAEI   52 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHh
Confidence            36899999999 4889999999999999999883             36666666665543

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=91.71  E-value=0.39  Score=48.91  Aligned_cols=50  Identities=24%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|-+|+...++          +.+.  +++|++++|.|- ..||+-+|.+|.+.+|.|.-
T Consensus       158 ~~PcTp~gv~~lL~----------~~~i--~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi  208 (303)
T 4b4u_A          158 YGSATPAGIMTILK----------ENNI--EIAGKHAVVVGRSAILGKPMAMMLLQANATVTI  208 (303)
T ss_dssp             CCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             ccCccHHHHHHHHH----------HHCC--CCCCCEEEEEeccccccchHHHHHHhcCCEEEE
Confidence            35789999876555          4565  589999999995 56899999999999998764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=91.58  E-value=0.21  Score=49.75  Aligned_cols=113  Identities=11%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHH-HCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC--CCcccCC--CC
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP--GTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~--~a~~i~~--el  352 (535)
                      +..+|+|.|+ |.+|+.+++.+. ..|..||++.|.+..-.  .|  -|..          .+.+..  +....+.  ++
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~--~g--~d~~----------~~~g~~~~~v~~~~dl~~~   69 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LG--SDAG----------ELAGAGKTGVTVQSSLDAV   69 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CS--CCTT----------CSSSSSCCSCCEESCSTTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhh--hh--hhHH----------HHcCCCcCCceecCCHHHH
Confidence            4579999998 999999999876 46899999988653110  13  2221          111111  1111222  45


Q ss_pred             ccccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHHHh----CCceeeccc
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAMLLK----KNVLIIPDI  409 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL~~----rGI~viPD~  409 (535)
                      +. ++|++|-++.+.. +.+++...   ...+|++-. + .|++..+.|.+    .++++.|.+
T Consensus        70 l~-~~DvVIDft~p~~-~~~~~~~a~~~G~~vVigTt-G-~~~e~~~~L~~~a~~~~vv~a~N~  129 (273)
T 1dih_A           70 KD-DFDVFIDFTRPEG-TLNHLAFCRQHGKGMVIGTT-G-FDEAGKQAIRDAAADIAIVFAANF  129 (273)
T ss_dssp             TT-SCSEEEECSCHHH-HHHHHHHHHHTTCEEEECCC-C-CCHHHHHHHHHHTTTSCEEECSCC
T ss_pred             hc-CCCEEEEcCChHH-HHHHHHHHHhCCCCEEEECC-C-CCHHHHHHHHHhcCCCCEEEEecC
Confidence            54 8999998886443 23444333   347888766 3 55544444432    355555543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=91.57  E-value=0.13  Score=52.11  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHH--CCCeEEEEecCCceEeCCCCCCCCHHH-HHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRR--GRAKCLAIVEHDTAIVPDKGTEINYKD-LHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e--~GakVVaVsD~~G~iynp~G~dLDi~~-L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ..+|+|.|+|++|..+++.|.+  .++++++|+|.+            .+. .++..++.|..      ...+.  +++.
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~------------~~~~~~~~a~~~g~~------~~~~~~e~ll~   65 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGID------------AASDGLARAQRMGVT------TTYAGVEGLIK   65 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSC------------TTCHHHHHHHHTTCC------EESSHHHHHHH
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCC------------hhhhHHHHHHHcCCC------cccCCHHHHHh
Confidence            4699999999999999999965  578999998753            222 23333444311      01112  4544


Q ss_pred             ----ccceEEeeccccccccccccccc-----cceEEEec
Q psy1913         355 ----DKVDILVPAAIEKVIRKSNADKV-----QAKIIVEA  385 (535)
Q Consensus       355 ----~~~DILiPaA~~~~It~~na~~i-----~AkiIvEg  385 (535)
                          .++|+.+-|+. +..+.+.+...     ...+|+|-
T Consensus        66 ~~~~~~iDvV~~atp-~~~h~~~a~~al~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           66 LPEFADIDFVFDATS-ASAHVQNEALLRQAKPGIRLIDLT  104 (312)
T ss_dssp             SGGGGGEEEEEECSC-HHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ccCCCCCcEEEECCC-hHHHHHHHHHHHHhCCCCEEEEcC
Confidence                47999999987 55666665544     23466644

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=91.55  E-value=0.22  Score=53.58  Aligned_cols=42  Identities=21%  Similarity=0.125  Sum_probs=35.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      -++|+|+|.|++|..+|..|.+.|..|+.             .|.+.+.+.+..+
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l-------------~D~~~e~l~~~~~   46 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLL-------------YDISAEALTRAID   46 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSCHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHH
Confidence            35899999999999999999999999987             5677777766554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=91.46  E-value=0.36  Score=51.58  Aligned_cols=107  Identities=9%  Similarity=-0.003  Sum_probs=67.6

Q ss_pred             CCcEEEEEcc----ccHHHHHHHHHHHC--CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--
Q psy1913         279 ENKTYIVQGF----GNVGFHAARYFRRG--RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--  350 (535)
Q Consensus       279 ~g~~VaIQGf----GnVG~~~A~~L~e~--GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--  350 (535)
                      +-.+|+|+|+    |.+|...++.|.+.  +++||||+|            .|.+.+.+..++.|    .+....++.  
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d------------~~~~~a~~~a~~~g----~~~~~~~~d~~  101 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYN------------PTLKSSLQTIEQLQ----LKHATGFDSLE  101 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEEC------------SCHHHHHHHHHHTT----CTTCEEESCHH
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEe------------CCHHHHHHHHHHcC----CCcceeeCCHH
Confidence            3479999999    99999888888875  889999876            55666766666654    122223444  


Q ss_pred             CCcc-ccceEEeeccccccccccccc-cccc--------eEEEecCCCCC--C-HHHHHH---HHhCC-cee
Q psy1913         351 DIMF-DKVDILVPAAIEKVIRKSNAD-KVQA--------KIIVEAANGPL--T-PAAHAM---LLKKN-VLI  405 (535)
Q Consensus       351 ell~-~~~DILiPaA~~~~It~~na~-~i~A--------kiIvEgAN~p~--T-~eA~~i---L~~rG-I~v  405 (535)
                      +++. .++|+++-|+.. ..+.+.+. -+++        .++||=   |+  | .+++++   .+++| +.+
T Consensus       102 ell~~~~vD~V~I~tp~-~~H~~~~~~al~aG~~~~~~khVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~  169 (479)
T 2nvw_A          102 SFAQYKDIDMIVVSVKV-PEHYEVVKNILEHSSQNLNLRYLYVEW---ALAASVQQAEELYSISQQRANLQT  169 (479)
T ss_dssp             HHHHCTTCSEEEECSCH-HHHHHHHHHHHHHSSSCSSCCEEEEES---SSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred             HHhcCCCCCEEEEcCCc-HHHHHHHHHHHHCCCCcCCceeEEEeC---CCcCCHHHHHHHHHHHHHcCCeEE
Confidence            6664 578999988753 33333332 2222        377773   52  2 344443   45677 554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.45  E-value=2.4  Score=45.08  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=27.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ..|++|.|.|.||..+|..|++.|..|++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~   36 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVC   36 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence            36999999999999999999999999998

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=91.33  E-value=1.3  Score=45.56  Aligned_cols=114  Identities=14%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC--CcccCC--CCc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG--TKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~--a~~i~~--ell  353 (535)
                      ..++|+|.|.|..|+..++.|.. .+.+-|.|.|            .+.+...++.++...   +++  ....+.  +.+
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~------------r~~~~a~~la~~~~~---~~g~~~~~~~~~~eav  192 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYD------------TDPLATAKLIANLKE---YSGLTIRRASSVAEAV  192 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEEC------------SSHHHHHHHHHHHTT---CTTCEEEECSSHHHHH
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEc------------CCHHHHHHHHHHHHh---ccCceEEEeCCHHHHH
Confidence            57899999999999999887754 5655555443            556777666655321   112  122232  333


Q ss_pred             cccceEEeeccccc----cccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecccc
Q psy1913         354 FDKVDILVPAAIEK----VIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIF  410 (535)
Q Consensus       354 ~~~~DILiPaA~~~----~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~l  410 (535)
                       .+|||++-|+...    ++..+.. +=.+-+++.|+..|-..|.+..+.+++..|+ |..
T Consensus       193 -~~aDiVi~aTps~~~~pvl~~~~l-~~G~~V~~vgs~~p~~~El~~~~~~~a~v~v-D~~  250 (350)
T 1x7d_A          193 -KGVDIITTVTADKAYATIITPDML-EPGMHLNAVGGDCPGKTELHADVLRNARVFV-EYE  250 (350)
T ss_dssp             -TTCSEEEECCCCSSEEEEECGGGC-CTTCEEEECSCCBTTBEEECHHHHHTSEEEE-SSH
T ss_pred             -hcCCEEEEeccCCCCCceecHHHc-CCCCEEEECCCCCCCceeeCHHHHhcCcEEE-CCH
Confidence             3799999998854    2332211 1135788899998877676666677786554 543

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=91.25  E-value=0.53  Score=46.27  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=55.0

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCccccce
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~~D  358 (535)
                      .+|+|.|+ |.+|+.+++.+.+. +..|+++.|..        .|+  +                       +++..++|
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------~dl--~-----------------------~~~~~~~D   47 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------DPL--S-----------------------LLTDGNTE   47 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------CCT--H-----------------------HHHHTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------CCH--H-----------------------HHhccCCc
Confidence            37999996 99999999999865 99999988763        112  1                       12223679


Q ss_pred             EEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHH
Q psy1913         359 ILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAML  398 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL  398 (535)
                      |+|-++.+..+ .+|+...   ...+|++-. + .+++..+.|
T Consensus        48 vvIDfT~p~a~-~~~~~~a~~~g~~~VigTT-G-~~~e~~~~l   87 (245)
T 1p9l_A           48 VVIDFTHPDVV-MGNLEFLIDNGIHAVVGTT-G-FTAERFQQV   87 (245)
T ss_dssp             EEEECSCTTTH-HHHHHHHHHTTCEEEECCC-C-CCHHHHHHH
T ss_pred             EEEEccChHHH-HHHHHHHHHcCCCEEEcCC-C-CCHHHHHHH
Confidence            99999866544 4555432   457777655 3 566544333

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=91.06  E-value=0.69  Score=41.26  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCC--CCCCCHHHHHHHHHHcCCcccCCCCcccCC--C
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDK--GTEINYKDLHTYKITKGTIKGYPGTKSAPT--D  351 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~--G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--e  351 (535)
                      -++|+|+|.    |+.|+.+++.|.+.|++|..|        ||+  +               ..+.   |...++.  +
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~v--------np~~~~---------------~~i~---G~~~~~sl~e   66 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPV--------NPRFQG---------------EELF---GEEAVASLLD   66 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEE--------CGGGTT---------------SEET---TEECBSSGGG
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEe--------CCCccc---------------CcCC---CEEecCCHHH
Confidence            369999999    899999999999999987663        343  3               1111   1122222  2


Q ss_pred             CccccceEEeeccc----cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcchhh
Q psy1913         352 IMFDKVDILVPAAI----EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSY  420 (535)
Q Consensus       352 ll~~~~DILiPaA~----~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVivSy  420 (535)
                      +- .++|+.+-|..    ..++.+--...+++ +++- + +..+.++.++.+++|+.++   --|+=|++...
T Consensus        67 l~-~~vDlavi~vp~~~~~~v~~~~~~~gi~~-i~~~-~-g~~~~~~~~~a~~~Gir~v---gpnc~g~~~~~  132 (140)
T 1iuk_A           67 LK-EPVDILDVFRPPSALMDHLPEVLALRPGL-VWLQ-S-GIRHPEFEKALKEAGIPVV---ADRCLMVEHKR  132 (140)
T ss_dssp             CC-SCCSEEEECSCHHHHTTTHHHHHHHCCSC-EEEC-T-TCCCHHHHHHHHHTTCCEE---ESCCHHHHHHH
T ss_pred             CC-CCCCEEEEEeCHHHHHHHHHHHHHcCCCE-EEEc-C-CcCHHHHHHHHHHcCCEEE---cCCccceEChh
Confidence            22 25666655543    33332211122332 3332 1 2246888899999999875   23666665543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=91.04  E-value=0.53  Score=41.49  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             cEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         281 KTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       281 ~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++|||.|.    +.+|..+.+.|.+.|++|+.|        ||.+               ..+.+.   +.++.  ++-+
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pV--------nP~~---------------~~i~G~---~~y~sl~dlp~   58 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPV--------GRKK---------------GEVLGK---TIINERPVIEG   58 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEE--------SSSC---------------SEETTE---ECBCSCCCCTT
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEE--------CCCC---------------CcCCCe---eccCChHHCCC
Confidence            68999997    679999999999999998874        5554               112111   11111  2222


Q ss_pred             ccceEEeecc---c-cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCcc
Q psy1913         355 DKVDILVPAA---I-EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT  417 (535)
Q Consensus       355 ~~~DILiPaA---~-~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGVi  417 (535)
                        +|+.+-|.   . ..++.+--+..++  .|+ -.-|...+|+.++.++.||.++|    |+=||.
T Consensus        59 --vDlavi~~p~~~v~~~v~e~~~~g~k--~v~-~~~G~~~~e~~~~a~~~Girvv~----nC~gv~  116 (122)
T 3ff4_A           59 --VDTVTLYINPQNQLSEYNYILSLKPK--RVI-FNPGTENEELEEILSENGIEPVI----GCTLVM  116 (122)
T ss_dssp             --CCEEEECSCHHHHGGGHHHHHHHCCS--EEE-ECTTCCCHHHHHHHHHTTCEEEE----SCHHHH
T ss_pred             --CCEEEEEeCHHHHHHHHHHHHhcCCC--EEE-ECCCCChHHHHHHHHHcCCeEEC----CcCeEE
Confidence              45554443   2 3333322222334  333 23345678999999999999985    554543

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=91.03  E-value=0.069  Score=54.01  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=69.6

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccC--CCCcccCC--CCc
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGY--PGTKSAPT--DIM  353 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~--~~a~~i~~--ell  353 (535)
                      -.||+|.| +|++|+.+++.+.+ .+..+|++.|.++.  +..|  .|+.++          .+.  .+....++  +++
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~--~~~G--~d~gel----------~G~~~~gv~v~~dl~~ll   86 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS--SFVD--KDASIL----------IGSDFLGVRITDDPESAF   86 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC--TTTT--SBGGGG----------TTCSCCSCBCBSCHHHHT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--cccc--cchHHh----------hccCcCCceeeCCHHHHh
Confidence            36999999 99999999999875 68999999998643  1245  554433          111  12222233  455


Q ss_pred             cccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHHH----HhCCceeeccccc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAML----LKKNVLIIPDIFA  411 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~iL----~~rGI~viPD~la  411 (535)
                      . ++||+|-++..... .+|+...   ...+|++- =+ .+++..+.|    ++.++++.|-+..
T Consensus        87 ~-~aDVvIDFT~p~a~-~~~~~~~l~~Gv~vViGT-TG-~~~e~~~~L~~aa~~~~~~~a~N~Si  147 (288)
T 3ijp_A           87 S-NTEGILDFSQPQAS-VLYANYAAQKSLIHIIGT-TG-FSKTEEAQIADFAKYTTIVKSGNMSL  147 (288)
T ss_dssp             T-SCSEEEECSCHHHH-HHHHHHHHHHTCEEEECC-CC-CCHHHHHHHHHHHTTSEEEECSCCCH
T ss_pred             c-CCCEEEEcCCHHHH-HHHHHHHHHcCCCEEEEC-CC-CCHHHHHHHHHHhCcCCEEEECCCcH
Confidence            4 89999999865442 4454433   34666643 23 455433333    3345666666543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=90.97  E-value=0.16  Score=51.78  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=63.5

Q ss_pred             CCcEEEEEccccHHH-HHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         279 ENKTYIVQGFGNVGF-HAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~-~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +..+|+|+|+|++|. +.++.|.+. +++|++|+|            .|.+.+.+..++      |++...+++  +++.
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d------------~~~~~~~~~a~~------~~~~~~~~~~~~ll~   65 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACD------------SDLERARRVHRF------ISDIPVLDNVPAMLN   65 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEEC------------SSHHHHGGGGGT------SCSCCEESSHHHHHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEc------------CCHHHHHHHHHh------cCCCcccCCHHHHhc
Confidence            457999999999998 478888775 899999876            445555444333      223333444  5664


Q ss_pred             -ccceEEeeccccccccccccccc-c--ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         355 -DKVDILVPAAIEKVIRKSNADKV-Q--AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 -~~~DILiPaA~~~~It~~na~~i-~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                       .++|+++-|+.. ..+.+.+... +  ..++||=   |+  | .+++++   .+++|+.+.
T Consensus        66 ~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~e~~~l~~~a~~~g~~~~  123 (359)
T 3m2t_A           66 QVPLDAVVMAGPP-QLHFEMGLLAMSKGVNVFVEK---PPCATLEELETLIDAARRSDVVSG  123 (359)
T ss_dssp             HSCCSEEEECSCH-HHHHHHHHHHHHTTCEEEECS---CSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCEEEEcCCc-HHHHHHHHHHHHCCCeEEEEC---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence             468988877653 3333333222 2  3577763   42  2 344443   345666543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.96  E-value=0.17  Score=48.79  Aligned_cols=47  Identities=21%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.|. |.+|+++|+.|.+.|++|+.+             +.+.+.+.+..++.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~-------------~r~~~~~~~~~~~~   52 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLT-------------GRNESNIARIREEF   52 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHh
Confidence            478999999985 789999999999999999883             35666666665543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.96  E-value=0.095  Score=49.79  Aligned_cols=107  Identities=13%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~  355 (535)
                      .++|+|.|+|.+|+.+|+.|.+.|. |++| |            -|.+.+....  .+ +.-+.+ ...+.+.|    -.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vi-d------------~~~~~~~~~~--~~-~~~i~g-d~~~~~~l~~a~i~   70 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLA-E------------DENVRKKVLR--SG-ANFVHG-DPTRVSDLEKANVR   70 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEE-S------------CGGGHHHHHH--TT-CEEEES-CTTCHHHHHHTTCT
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEE-E------------CCHHHHHHHh--cC-CeEEEc-CCCCHHHHHhcCcc
Confidence            4689999999999999999999998 7763 2            3344444433  22 111100 00011222    24


Q ss_pred             cceEEeecccccccc---cccccccc--ceEEEecCCCCCCHHHHHHHHhCCce--eecc
Q psy1913         356 KVDILVPAAIEKVIR---KSNADKVQ--AKIIVEAANGPLTPAAHAMLLKKNVL--IIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~~~It---~~na~~i~--AkiIvEgAN~p~T~eA~~iL~~rGI~--viPD  408 (535)
                      ++|.+|-|......+   ...+.++.  .++|+...|    ++..+.|++.|+.  +.|.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~----~~~~~~l~~~G~~~vi~p~  126 (234)
T 2aef_A           71 GARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGADQVISPF  126 (234)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSS----GGGHHHHHHHTCSEEECHH
T ss_pred             hhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECC----HhHHHHHHHCCCCEEECHH
Confidence            789999887654333   34444443  477877643    3444677777874  4454

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=90.94  E-value=0.12  Score=49.97  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=27.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHH--HHHCCCeEEEEecCC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARY--FRRGRAKCLAIVEHD  313 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~--L~e~GakVVaVsD~~  313 (535)
                      +.+|++   +..+|+|.|.|++|..+++.  +...|++|||+.|.+
T Consensus        78 ~~lg~~---~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~d  120 (215)
T 2vt3_A           78 KTLDQD---EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDIN  120 (215)
T ss_dssp             HHHHHC------CEEEECCSHHHHHHHHCC------CCEEEEEESC
T ss_pred             HHhCcC---CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCC
Confidence            345553   35789999999999999994  445699999998853

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.93  E-value=0.88  Score=46.43  Aligned_cols=119  Identities=11%  Similarity=0.117  Sum_probs=65.6

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcc
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKS  347 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~  347 (535)
                      ..++.   .|.+|+|.|.|.||..+++++...|+ +|+++             +.+.+.+. +.++.|.  +.++.....
T Consensus       177 ~~~~~---~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~-------------~~~~~~~~-~a~~lGa~~vi~~~~~~~  239 (370)
T 4ej6_A          177 LSGIK---AGSTVAILGGGVIGLLTVQLARLAGATTVILS-------------TRQATKRR-LAEEVGATATVDPSAGDV  239 (370)
T ss_dssp             HHTCC---TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE-------------CSCHHHHH-HHHHHTCSEEECTTSSCH
T ss_pred             hcCCC---CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-------------CCCHHHHH-HHHHcCCCEEECCCCcCH
Confidence            45554   58999999999999999999999999 77773             34455543 3334442  112211111


Q ss_pred             cCC--C---CccccceEEeeccccccccccccccc--cceEEEecCCC---CCCHHHHHHHHhCCceeec
Q psy1913         348 APT--D---IMFDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANG---PLTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       348 i~~--e---ll~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~---p~T~eA~~iL~~rGI~viP  407 (535)
                      ...  +   +..-.+|+++-|+.....-..-...+  ..++|.=|...   +.+..... |..|++.+.-
T Consensus       240 ~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~-~~~~~~~i~g  308 (370)
T 4ej6_A          240 VEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFD-ILFRELRVLG  308 (370)
T ss_dssp             HHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHH-HHHTTCEEEE
T ss_pred             HHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHH-HHhCCcEEEE
Confidence            111  1   22237899999886332222222222  34666655432   22222222 4566766653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=90.80  E-value=0.49  Score=47.32  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-Cccc-CCCCc------ccCC-C
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-TIKG-YPGTK------SAPT-D  351 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-~v~~-~~~a~------~i~~-e  351 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+. +       +       .. +..++.| .+.+ +.+..      ..++ +
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~-r-------~-------~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~   66 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVS-R-------S-------DY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAA   66 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEEC-S-------T-------TH-HHHHHHCEEEEETTTCCEEECCSCEESCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEe-C-------C-------hH-HHHHhCCcEEeecCCCcEEEeeeeeECCHH
Confidence            589999999999999999999999887643 1       1       11 2222233 2222 11211      1122 2


Q ss_pred             CccccceEEeeccccccccccccccc----c-ceEEEecCCCCCC-HHHHHHHHhCCceee
Q psy1913         352 IMFDKVDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGPLT-PAAHAMLLKKNVLII  406 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p~T-~eA~~iL~~rGI~vi  406 (535)
                      -...++|++|-|.....+. +-++.+    . -.+|+-..||--. ....+.|-...|+..
T Consensus        67 ~~~~~~DlVilavK~~~~~-~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g  126 (320)
T 3i83_A           67 ELETKPDCTLLCIKVVEGA-DRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISG  126 (320)
T ss_dssp             GCSSCCSEEEECCCCCTTC-CHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEE
T ss_pred             HcCCCCCEEEEecCCCChH-HHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEE
Confidence            2224899999998766654 333333    2 2578888998743 445555554444443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=90.67  E-value=0.72  Score=45.07  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++++|.|.|. |-+|+++++.|.+.|++|+++.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~   42 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA   42 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence            467899999997 9999999999999999999854

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=90.53  E-value=0.23  Score=47.48  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++++++.|.|. |.+|+++|+.|++.|++|+.+             +-+.+.+.+..++.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~-------------~r~~~~~~~~~~~~   53 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIV-------------DRDKAGAERVAGEI   53 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-------------cCCHHHHHHHHHHh
Confidence            468999999995 789999999999999999884             35666666665544

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=90.53  E-value=0.11  Score=50.43  Aligned_cols=110  Identities=13%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHH--HHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCCCCC
Q psy1913         171 KYNNRELERIT--RKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIRGRE  248 (535)
Q Consensus       171 ~~s~~Eler~~--r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~gr~  248 (535)
                      +.++.-++|+.  -||...|...|.     .      -++.++++-++.-.+..... |....|. .|++          
T Consensus         6 ~ip~~ti~RL~~Y~r~l~~l~~~g~-----~------~isS~ela~~~gv~~~qiRk-Dls~fg~-~G~~----------   62 (212)
T 3keo_A            6 SIPKATAKRLSLYYRIFKRFNTDGI-----E------KASSKQIADALGIDSATVRR-DFSYFGE-LGRR----------   62 (212)
T ss_dssp             CCCHHHHTTHHHHHHHHHHHHHTTC-----C------EECHHHHHHHHTSCHHHHHH-HHHTTGG-GTTT----------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHCCC-----e------EECHHHHHHHHCCCHHHHHH-HHHHHhh-cCCC----------
Confidence            34556666654  466777775421     1      24777887665433222211 1111121 1333          


Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHH--HHCCCeEEEEecCC
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF--RRGRAKCLAIVEHD  313 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L--~e~GakVVaVsD~~  313 (535)
                       --||-|-.-++      +..+.+|++   +..+|+|.|.|+.|..+++.+  .+.|.++||+.|.+
T Consensus        63 -g~GY~V~~L~~------~i~~~Lg~~---~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~d  119 (212)
T 3keo_A           63 -GFGYDVKKLMN------FFAEILNDH---STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLD  119 (212)
T ss_dssp             -SSSEEHHHHHH------HHHHHTTTT---SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECT
T ss_pred             -CCCEEHHHHHH------HHHHHhCCC---CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCC
Confidence             11344433333      444568865   567999999999999999984  45789999988754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=90.51  E-value=0.22  Score=48.81  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=38.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+             |.+.+.+.+..++.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~-------------~r~~~~~~~~~~~~   71 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVA-------------DVNEDAAVRVANEI   71 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-------------ESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHh
Confidence            578999999984 789999999999999999883             36666676666553

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=90.46  E-value=0.2  Score=48.12  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   35 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLA   35 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            368999999985 899999999999999999884

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=90.45  E-value=0.16  Score=50.95  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~  313 (535)
                      +-.+|+|.|+|++|...++.|.+ .+++|++|+|.+
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~   39 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRT   39 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSC
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence            34799999999999988888876 478999998864

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=90.33  E-value=0.41  Score=46.80  Aligned_cols=46  Identities=20%  Similarity=0.244  Sum_probs=37.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+.             .+.+.+.+..++
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~-------------r~~~~~~~~~~~   59 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAV-------------RDTRKGEAAART   59 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEE-------------SCHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEE-------------CCHHHHHHHHHH
Confidence            588999999985 8899999999999999998843             566666555543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=90.27  E-value=0.32  Score=50.26  Aligned_cols=73  Identities=11%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCCcEEEEEcccc---HHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--C
Q psy1913         278 MENKTYIVQGFGN---VGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--D  351 (535)
Q Consensus       278 l~g~~VaIQGfGn---VG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--e  351 (535)
                      ++-.+|+|+|+|.   +|..-+..+... +++||++.           +|.|.+...+..++.|.    +.....++  +
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v-----------~d~~~~~a~~~a~~~g~----~~~~~~~~~~~   74 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGA-----------FDIDPIRGSAFGEQLGV----DSERCYADYLS   74 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEE-----------CCSSHHHHHHHHHHTTC----CGGGBCSSHHH
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEE-----------eCCCHHHHHHHHHHhCC----CcceeeCCHHH
Confidence            4567999999999   998877777665 47888722           44677777777776542    11123333  5


Q ss_pred             Cccc------cceEEeeccc
Q psy1913         352 IMFD------KVDILVPAAI  365 (535)
Q Consensus       352 ll~~------~~DILiPaA~  365 (535)
                      ++..      ++|+++-|+.
T Consensus        75 ll~~~~~~~~~vD~V~i~tp   94 (398)
T 3dty_A           75 MFEQEARRADGIQAVSIATP   94 (398)
T ss_dssp             HHHHHTTCTTCCSEEEEESC
T ss_pred             HHhcccccCCCCCEEEECCC
Confidence            6643      5888887664

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=90.15  E-value=0.1  Score=55.79  Aligned_cols=132  Identities=11%  Similarity=0.074  Sum_probs=78.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc-CC---ccc------C-----
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK-GT---IKG------Y-----  342 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~-g~---v~~------~-----  342 (535)
                      +-.+|+|+|+|.+|+..++.+.+ .+.+|++|+|            .|.+...+..++. |.   +..      .     
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D------------~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~   89 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSA------------RRLPNTFKAIRTAYGDEENAREATTESAMTRAIE   89 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEEC------------SSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEe------------CCHHHHHHHHHHhcCCccccccccchhhhhhhhc
Confidence            34799999999999999888765 5889999986            4455555554443 31   000      0     


Q ss_pred             -CCCcccCC--CCcc-ccceEEeecccccccccccc-ccccc--eEEEecCCCCCCH-HHH---HHHHhCCceeeccccc
Q psy1913         343 -PGTKSAPT--DIMF-DKVDILVPAAIEKVIRKSNA-DKVQA--KIIVEAANGPLTP-AAH---AMLLKKNVLIIPDIFA  411 (535)
Q Consensus       343 -~~a~~i~~--ell~-~~~DILiPaA~~~~It~~na-~~i~A--kiIvEgAN~p~T~-eA~---~iL~~rGI~viPD~la  411 (535)
                       ......++  +++. -++|+++-|+.....+.+.+ .-+++  .++++  |-+++. ++.   +.-+++|+.+.+-+-.
T Consensus        90 ~g~~~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~--nk~l~~~eg~eL~~~A~e~Gvvl~~~~gd  167 (446)
T 3upl_A           90 AGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMM--NVEADVTIGPYLKAQADKQGVIYSLGAGD  167 (446)
T ss_dssp             TTCEEEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEEC--CHHHHHHHHHHHHHHHHHHTCCEEECTTS
T ss_pred             cCCceEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEec--CcccCHHHHHHHHHHHHHhCCeeeecCCc
Confidence             01122344  5665 47999999986443333333 22333  45543  545432 233   3446789888654422


Q ss_pred             cccCcchhhHhhhh
Q psy1913         412 NAGGVTVSYFEWLK  425 (535)
Q Consensus       412 NaGGVivSy~Ew~q  425 (535)
                      . -+.+.--++|.+
T Consensus       168 q-p~~~~eLv~~a~  180 (446)
T 3upl_A          168 E-PSSCMELIEFVS  180 (446)
T ss_dssp             H-HHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHH
Confidence            2 255667778876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=90.09  E-value=0.23  Score=50.50  Aligned_cols=98  Identities=10%  Similarity=0.087  Sum_probs=59.1

Q ss_pred             CCCCc-EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC------CcccC
Q psy1913         277 CMENK-TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG------TKSAP  349 (535)
Q Consensus       277 ~l~g~-~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~------a~~i~  349 (535)
                      ++..+ +|+|.|.|++|..+|..|.+.|..|+.             .|.+.+.+....+........++      ....+
T Consensus        11 ~~m~M~kI~iIG~G~mG~~la~~L~~~G~~V~~-------------~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   77 (366)
T 1evy_A           11 ELLYLNKAVVFGSGAFGTALAMVLSKKCREVCV-------------WHMNEEEVRLVNEKRENVLFLKGVQLASNITFTS   77 (366)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHTTTEEEEEE-------------ECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEES
T ss_pred             HhhccCeEEEECCCHHHHHHHHHHHhCCCEEEE-------------EECCHHHHHHHHHcCcccccccccccccceeeeC
Confidence            34345 899999999999999999999988876             23555666555544322211122      11112


Q ss_pred             C--CCccccceEEeecccccccccccc--------cccc--ceEEEecCCCC
Q psy1913         350 T--DIMFDKVDILVPAAIEKVIRKSNA--------DKVQ--AKIIVEAANGP  389 (535)
Q Consensus       350 ~--ell~~~~DILiPaA~~~~It~~na--------~~i~--AkiIvEgAN~p  389 (535)
                      .  +.+ .+||++|-|.....+. +-+        +.++  -.+|+.-.|+-
T Consensus        78 ~~~~~~-~~aDvVilav~~~~~~-~v~~~~~~gl~~~l~~~~~ivv~~~~gi  127 (366)
T 1evy_A           78 DVEKAY-NGAEIILFVIPTQFLR-GFFEKSGGNLIAYAKEKQVPVLVCTKGI  127 (366)
T ss_dssp             CHHHHH-TTCSSEEECCCHHHHH-HHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred             CHHHHH-cCCCEEEECCChHHHH-HHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence            2  222 3799999998754332 222        2233  35788888864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.01  E-value=0.47  Score=48.35  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=29.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|.|.|.|.||..+++++...|++|+++.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~  218 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVIS  218 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            58999999999999999999999999998854

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.92  E-value=0.21  Score=49.05  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=37.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.| .|.+|+++|+.|++.|++|+.+             |.+.+.+.+..++.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~-------------~r~~~~~~~~~~~~   73 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCA-------------DIDGDAADAAATKI   73 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEE-------------ESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHc
Confidence            47899999998 5789999999999999999883             36666666655543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=89.88  E-value=0.34  Score=46.35  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|+|.|+|++|+..++.|.+.|..|++|.|.+.     +   .+  .                  ..+.  +++..++|
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-----~---~~--~------------------~~~~~~~l~~~~~D   52 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-----E---HE--K------------------MVRGIDEFLQREMD   52 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-----C---CT--T------------------EESSHHHHTTSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-----c---hh--h------------------hcCCHHHHhcCCCC
Confidence            3799999999999999999999999999888652     1   10  0                  1222  44446899


Q ss_pred             EEeeccccccccccccccc---cceEEEecCCCCCCHHH----HHHHHhCCcee
Q psy1913         359 ILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAA----HAMLLKKNVLI  405 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA----~~iL~~rGI~v  405 (535)
                      +++-|+... .+.+.+...   ...+|+|..-.+..+++    .+..+++|+.+
T Consensus        53 vVv~~~~~~-~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~  105 (236)
T 2dc1_A           53 VAVEAASQQ-AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRV  105 (236)
T ss_dssp             EEEECSCHH-HHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCE
T ss_pred             EEEECCCHH-HHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeE
Confidence            999998754 455554332   24677775433334544    33456778764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=89.75  E-value=0.47  Score=46.77  Aligned_cols=45  Identities=22%  Similarity=0.210  Sum_probs=38.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +|+||++.|.|. +..|+.+|+.|++.|++|+.             +|.+.+.+.+..+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi-------------~~~~~~~~~~~~~   51 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVIL-------------NDIRATLLAESVD   51 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-------------CCSCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            479999999985 67999999999999999998             6788887766554

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.72  E-value=0.28  Score=52.18  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++|++|.|.|.|.||...+++|.+.|++|+.|+.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~   43 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence            47899999999999999999999999999988763

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=89.71  E-value=1  Score=46.50  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=28.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|-|||-+|+.+.+.|.+. ...||+|.|.
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~   35 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDL   35 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999876 6899999873

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=89.68  E-value=0.57  Score=48.85  Aligned_cols=90  Identities=9%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CCCcEEEEEcccc---HHHHHHHHHHHCC-CeEEE-EecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--
Q psy1913         278 MENKTYIVQGFGN---VGFHAARYFRRGR-AKCLA-IVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--  350 (535)
Q Consensus       278 l~g~~VaIQGfGn---VG~~~A~~L~e~G-akVVa-VsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--  350 (535)
                      ++-.+|+|+|+|.   +|..-+..+...+ ++||+ |+            |.|.+...+..++.|-    +....+++  
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~------------d~~~~~a~~~a~~~g~----~~~~~~~~~~   98 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGAL------------SSTPEKAEASGRELGL----DPSRVYSDFK   98 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEEC------------CSSHHHHHHHHHHHTC----CGGGBCSCHH
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEe------------CCCHHHHHHHHHHcCC----CcccccCCHH
Confidence            4567999999999   9987777776654 78886 54            4677777777776542    11123344  


Q ss_pred             CCccc------cceEEeeccccccccccccccc-c--ceEEEe
Q psy1913         351 DIMFD------KVDILVPAAIEKVIRKSNADKV-Q--AKIIVE  384 (535)
Q Consensus       351 ell~~------~~DILiPaA~~~~It~~na~~i-~--AkiIvE  384 (535)
                      +++..      ++|+++-|+.. ..+.+.+... +  ..++||
T Consensus        99 ~ll~~~~~~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~E  140 (417)
T 3v5n_A           99 EMAIREAKLKNGIEAVAIVTPN-HVHYAAAKEFLKRGIHVICD  140 (417)
T ss_dssp             HHHHHHHHCTTCCSEEEECSCT-TSHHHHHHHHHTTTCEEEEE
T ss_pred             HHHhcccccCCCCcEEEECCCc-HHHHHHHHHHHhCCCeEEEE
Confidence            56653      58988877653 3444433322 2  357777

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=89.67  E-value=0.23  Score=48.36  Aligned_cols=47  Identities=19%  Similarity=0.175  Sum_probs=37.3

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+             +.+.+.+.+..++.
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~-------------~r~~~~~~~~~~~~   71 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLH-------------GTREDKLKEIAADL   71 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHh
Confidence            468999999984 789999999999999999873             35566666665543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.65  E-value=0.17  Score=49.75  Aligned_cols=95  Identities=14%  Similarity=0.080  Sum_probs=57.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-----C-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCC------cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-----R-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGT------KS  347 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-----G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a------~~  347 (535)
                      ++|+|.|.|++|..+|..|.+.     | ..|+.+.             - .+.+..+.++.|- +...++.      ..
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~-------------r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~   74 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA-------------R-GAHLEAIRAAGGLRVVTPSRDFLARPTCV   74 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEEC-------------C-HHHHHHHHHHTSEEEECSSCEEEECCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEE-------------c-HHHHHHHHhcCCeEEEeCCCCeEEecceE
Confidence            5899999999999999999998     8 8887621             2 2334444432332 2111111      01


Q ss_pred             cCC-CCccccceEEeeccccccccccccccc----c-ceEEEecCCCCCC
Q psy1913         348 APT-DIMFDKVDILVPAAIEKVIRKSNADKV----Q-AKIIVEAANGPLT  391 (535)
Q Consensus       348 i~~-ell~~~~DILiPaA~~~~It~~na~~i----~-AkiIvEgAN~p~T  391 (535)
                      .++ +. ..+||++|-|.....+ .+-++.+    + -.+|+--.|+..+
T Consensus        75 ~~~~~~-~~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           75 TDNPAE-VGTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             ESCHHH-HCCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             ecCccc-cCCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            122 22 2479999999876654 3333333    2 3578888998744

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.61  E-value=0.31  Score=48.71  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=48.6

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--ell  353 (535)
                      .|.+|.|.|. |.+|..+++++...|++|+++.             .+.+.+....++.|.  +.++........  ++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  215 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIA-------------GGAEKCRFLVEELGFDGAIDYKNEDLAAGLKREC  215 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-------------SSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------------CCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhc
Confidence            5899999998 9999999999999999999843             556666555344442  111111111000  111


Q ss_pred             cccceEEeecccc
Q psy1913         354 FDKVDILVPAAIE  366 (535)
Q Consensus       354 ~~~~DILiPaA~~  366 (535)
                      ...+|+++-|+..
T Consensus       216 ~~~~d~vi~~~g~  228 (336)
T 4b7c_A          216 PKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEEEESSCH
T ss_pred             CCCceEEEECCCc
Confidence            2368999988864

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=89.59  E-value=0.28  Score=48.04  Aligned_cols=46  Identities=11%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      ++|+++.|.| .|.+|+++|+.|++.|++|+.+             +.+.+.+.+..++.
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~-------------~r~~~~~~~~~~~~   49 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVL-------------DKSAERLRELEVAH   49 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHT
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEE-------------eCCHHHHHHHHHHc
Confidence            6799999998 5789999999999999999983             35667776665554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=89.56  E-value=0.56  Score=47.45  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=60.8

Q ss_pred             cEEEEEccccHHH-HHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-c
Q psy1913         281 KTYIVQGFGNVGF-HAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-D  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~-~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~  355 (535)
                      .+|+|.|+|.+|. ..+..|.+. +++|++|+|.+      ..     +++   .++.+    .++...+++  +++. .
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~------~~-----~~~---a~~~~----~~~~~~~~~~~~ll~~~   64 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH------VN-----EKA---AAPFK----EKGVNFTADLNELLTDP   64 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT------CC-----HHH---HHHHH----TTTCEEESCTHHHHSCT
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC------HH-----HHH---HHhhC----CCCCeEECCHHHHhcCC
Confidence            5899999999998 567767654 89999999875      22     222   22211    123333444  5665 3


Q ss_pred             cceEEeeccccccccccccccc-c--ceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV-Q--AKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i-~--AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      ++|+++-|+.. ..+.+.+... +  ..++||   -|+  | .+++++   .+++|+.+.
T Consensus        65 ~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~  120 (349)
T 3i23_A           65 EIELITICTPA-HTHYDLAKQAILAGKSVIVE---KPFCDTLEHAEELFALGQEKGVVVM  120 (349)
T ss_dssp             TCCEEEECSCG-GGHHHHHHHHHHTTCEEEEC---SCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEeCCc-HHHHHHHHHHHHcCCEEEEE---CCCcCCHHHHHHHHHHHHHcCCeEE
Confidence            68999888754 3444443322 2  356775   342  2 344443   456676554

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=89.12  E-value=0.066  Score=50.70  Aligned_cols=32  Identities=9%  Similarity=0.043  Sum_probs=28.6

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+.+++|.|.|+|++|..+|+.|.+.|.+|+.
T Consensus        16 ~~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~   47 (201)
T 2yjz_A           16 SEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVF   47 (201)
Confidence            35778999999999999999999999988765

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.50  E-value=0.81  Score=48.66  Aligned_cols=29  Identities=28%  Similarity=0.260  Sum_probs=26.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      =++|+|.|.|.+|..+|..|.+.|..|+.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l   65 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVA   65 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence            35899999999999999999999999887

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=89.45  E-value=0.28  Score=46.49  Aligned_cols=48  Identities=19%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         276 PCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       276 ~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      .++++++|.|.| .|.+|+++|+.|++.|++|+.+.             .+.+.+.+..++.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~-------------r~~~~~~~~~~~~   58 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISG-------------SNEEKLKSLGNAL   58 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE-------------SCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEc-------------CCHHHHHHHHHHh
Confidence            357899999999 58899999999999999998843             5666666665543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.44  E-value=0.42  Score=47.07  Aligned_cols=46  Identities=24%  Similarity=0.288  Sum_probs=37.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|+||++.|.|- +..|+.+|+.|++.|++|+.             +|.+.+.+.+..++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~-------------~~~~~~~~~~~~~~   50 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVA-------------VELLEDRLNQIVQE   50 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EECCHHHHHHHHHH
Confidence            579999999985 67999999999999999988             55777777665543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=89.40  E-value=0.29  Score=43.62  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=26.5

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .|+|+|.|.+|..+|..|++.|.+|+. .|.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v-~Ek   33 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHL-FDK   33 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEE-ECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEE-EEC
Confidence            599999999999999999999999765 553

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.28  E-value=0.35  Score=49.79  Aligned_cols=96  Identities=13%  Similarity=0.061  Sum_probs=60.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc-----cCCCCc-
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS-----APTDIM-  353 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~-----i~~ell-  353 (535)
                      .++|+|.|.|++|..+|..|.+.|..|+.             .|.|.+.+.+..+.......+|+...     .+.++- 
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l-------------~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~e   95 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRL-------------WSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKA   95 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEE-------------ECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEE-------------EeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHH
Confidence            46899999999999999999999998876             33666666666554322222232211     111221 


Q ss_pred             -cccceEEeecccccccccccc----cccc-ceEEEecCCCC
Q psy1913         354 -FDKVDILVPAAIEKVIRKSNA----DKVQ-AKIIVEAANGP  389 (535)
Q Consensus       354 -~~~~DILiPaA~~~~It~~na----~~i~-AkiIvEgAN~p  389 (535)
                       -.+||++|-|.....+. +.+    +.++ -.+|+-.+|+-
T Consensus        96 a~~~aDvVilaVp~~~~~-~vl~~i~~~l~~~~ivvs~~kGi  136 (356)
T 3k96_A           96 SLEGVTDILIVVPSFAFH-EVITRMKPLIDAKTRIAWGTKGL  136 (356)
T ss_dssp             HHTTCCEEEECCCHHHHH-HHHHHHGGGCCTTCEEEECCCSC
T ss_pred             HHhcCCEEEECCCHHHHH-HHHHHHHHhcCCCCEEEEEeCCC
Confidence             24799999997755332 222    2332 35788888875

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=89.15  E-value=2.1  Score=43.78  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEec
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD  311 (535)
                      .+|+|.|||.+|+.+++.|.+ .+..||+|.|
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d   35 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecC
Confidence            589999999999999999876 5799999987

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=89.15  E-value=1  Score=44.20  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       250 aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      -++.|....++..         ++.  +++|+++.|.| .|.+|+++++.|.+.|++|+.
T Consensus       100 Td~~g~~~~l~~~---------~~~--~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i  148 (287)
T 1lu9_A          100 TTAAAGVALVVKA---------AGG--SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVL  148 (287)
T ss_dssp             HHHHHHHHHHHHH---------TTS--CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             chHHHHHHHHHHh---------hcc--CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence            3567776666521         143  46899999999 999999999999999999554

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=89.14  E-value=0.2  Score=48.78  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~   42 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLAD   42 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEc
Confidence            578999999995 8899999999999999988743

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.12  E-value=0.26  Score=49.83  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .|+.++|.|.|.|-+|..+|+.|...|..=+.|.|.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~   68 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDY   68 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECC
Confidence            367899999999999999999999999866666664

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=89.12  E-value=0.35  Score=48.71  Aligned_cols=92  Identities=17%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc------ccCC-CC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK------SAPT-DI  352 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~------~i~~-el  352 (535)
                      .++|+|.|.|++|..+|..|.+.|..|+.+.             -+ +.+.+.. +.|.....++..      ..+. +-
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~-------------r~-~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~   67 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLA-------------RG-ATLQALQ-TAGLRLTEDGATHTLPVRATHDAAA   67 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEEC-------------CH-HHHHHHH-HTCEEEEETTEEEEECCEEESCHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEE-------------Ch-HHHHHHH-HCCCEEecCCCeEEEeeeEECCHHH
Confidence            4689999999999999999999999887732             22 2333333 333211112111      1122 11


Q ss_pred             ccccceEEeecccccccccccccccc-----ceEEEecCCC
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANG  388 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~  388 (535)
                      + .+||++|-|.....+. +-+..+.     -.+|+-..||
T Consensus        68 ~-~~~D~Vilavk~~~~~-~~~~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           68 L-GEQDVVIVAVKAPALE-SVAAGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             H-CCCSEEEECCCHHHHH-HHHGGGSSSCCTTCEEEECCSS
T ss_pred             c-CCCCEEEEeCCchhHH-HHHHHHHhhCCCCCEEEEECCC
Confidence            2 5799999998765433 3344442     3688999999

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=89.11  E-value=0.34  Score=47.11  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   39 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVIC   39 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=89.09  E-value=0.29  Score=46.72  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIA   37 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999998874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.99  E-value=0.49  Score=45.36  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcc-c-cHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-G-NVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-G-nVG~~~A~~L~e~GakVVaV  309 (535)
                      .++++++.|.|. | .+|+++|+.|.+.|++|+.+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~   53 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVIS   53 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEe
Confidence            478999999998 8 59999999999999999884

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.83  E-value=0.38  Score=45.91  Aligned_cols=32  Identities=19%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++++++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~   35 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVAC   35 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            5789999998 4889999999999999999884

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=88.78  E-value=0.36  Score=50.75  Aligned_cols=115  Identities=18%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHC-C-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC----ccc----------CC
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRG-R-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT----IKG----------YP  343 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~-G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~----v~~----------~~  343 (535)
                      ++|+|.|+ |.||+.+++.+.+. + .+|++++           ++.+++.+.+..++.+-    +.+          ++
T Consensus         5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~-----------ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~   73 (388)
T 1r0k_A            5 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALT-----------ANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALA   73 (388)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEE-----------ESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTT
T ss_pred             eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEE-----------cCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhc
Confidence            78999999 99999999999885 3 7899885           44677777776666541    011          00


Q ss_pred             C--CcccCC-----CCccccceEEeeccccccccccc-cccccc-eEEEecCCCCCCH----HHHHHHHhCCceeecc
Q psy1913         344 G--TKSAPT-----DIMFDKVDILVPAAIEKVIRKSN-ADKVQA-KIIVEAANGPLTP----AAHAMLLKKNVLIIPD  408 (535)
Q Consensus       344 ~--a~~i~~-----ell~~~~DILiPaA~~~~It~~n-a~~i~A-kiIvEgAN~p~T~----eA~~iL~~rGI~viPD  408 (535)
                      +  .+.+..     +++..++|+++.|..+. ..-+. ...+++ |-|+ -||-.+..    +..+..+++|+.++|-
T Consensus        74 ~~~~~v~~g~~~~~el~~~~iDvVV~ai~G~-aGl~ptlaAi~aGK~Vv-lANKE~lv~~G~~l~~~A~~~gv~liPV  149 (388)
T 1r0k_A           74 GSSVEAAAGADALVEAAMMGADWTMAAIIGC-AGLKATLAAIRKGKTVA-LANKESLVSAGGLMIDAVREHGTTLLPV  149 (388)
T ss_dssp             TCSSEEEESHHHHHHHHTSCCSEEEECCCSG-GGHHHHHHHHHTTSEEE-ECCSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred             cCCcEEEeCccHHHHHHcCCCCEEEEeCCCH-HHHHHHHHHHHCCCEEE-EeCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence            0  011111     24444589999997542 12222 223333 3333 35666433    3334456779999885

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.77  E-value=0.43  Score=47.28  Aligned_cols=104  Identities=10%  Similarity=0.035  Sum_probs=62.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC--CHHHHHHHHHHcCCcccCCCC-----cccC--C-
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI--NYKDLHTYKITKGTIKGYPGT-----KSAP--T-  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL--Di~~L~~~~~~~g~v~~~~~a-----~~i~--~-  350 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+             |.  +.+.+....+. +....+ +.     ...+  . 
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~-------------~r~~~~~~~~~~~~~-~~~~~~-g~~~~~~~~~~~~~~   65 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIW-------------GTEFDTEILKSISAG-REHPRL-GVKLNGVEIFWPEQL   65 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEE-------------CCGGGHHHHHHHHTT-CCBTTT-TBCCCSEEEECGGGH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEE-------------EccCCHHHHHHHHHh-CcCccc-CccccceEEecHHhH
Confidence            37999999999999999999999988772             23  44555544432 211111 11     1112  1 


Q ss_pred             -CCccccceEEeeccccccccc---ccccccc-ceEEEecCCCC------CCHHHHHHHHhC
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGP------LTPAAHAMLLKK  401 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p------~T~eA~~iL~~r  401 (535)
                       +. -.+||++|-|.....+..   +-++ ++ -++|+.-.|+-      ......++|.+.
T Consensus        66 ~~~-~~~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~  125 (335)
T 1txg_A           66 EKC-LENAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLK  125 (335)
T ss_dssp             HHH-HTTCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTS
T ss_pred             HHH-HhcCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHh
Confidence             21 247999999987654322   1223 43 36888888875      334555666553

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=88.70  E-value=0.81  Score=49.07  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      ++|+|+|.|.+|..+|..|++.|..|+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l   82 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFL   82 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999999988

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=88.63  E-value=0.89  Score=44.72  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      +|+||++.|.|- +..|+.+|+.|++.|++|+.
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi   38 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVC   38 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEE
Confidence            589999999985 67999999999999999876

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=88.61  E-value=0.26  Score=48.00  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-cc--HHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GN--VGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-Gn--VG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++++|.|.|. |+  +|+++|+.|.+.|++|+.+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~   59 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTY   59 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEee
Confidence            478999999995 55  99999999999999988754

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=88.59  E-value=0.72  Score=43.43  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~   37 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITG   37 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46889999998 58999999999999999998843

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.51  E-value=0.55  Score=48.18  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc-CC--CCc-
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-PT--DIM-  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i-~~--ell-  353 (535)
                      +++++|.|.|.|.+|..+++.+...|++|++             .|.+.+.+....+..+..     ...+ ..  ++. 
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v-------------~dr~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~  226 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQI-------------FDINVERLSYLETLFGSR-----VELLYSNSAEIET  226 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHHGGG-----SEEEECCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EeCCHHHHHHHHHhhCce-----eEeeeCCHHHHHH
Confidence            5678999999999999999999999998887             446667766655432210     0001 11  111 


Q ss_pred             -cccceEEeecccc
Q psy1913         354 -FDKVDILVPAAIE  366 (535)
Q Consensus       354 -~~~~DILiPaA~~  366 (535)
                       -..+|++|-|+..
T Consensus       227 ~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          227 AVAEADLLIGAVLV  240 (361)
T ss_dssp             HHHTCSEEEECCCC
T ss_pred             HHcCCCEEEECCCc
Confidence             1268999988763

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.48  E-value=0.38  Score=46.38  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++++|.|.|.|-+|+++++.|.+.|++|++++-.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   35 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRS   35 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999997643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.40  E-value=0.92  Score=45.42  Aligned_cols=97  Identities=12%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc------ccCC-
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK------SAPT-  350 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~------~i~~-  350 (535)
                      ...++|+|.|.|++|..+|..|.+.|..|+.+              .+.+.+....+..-.+. .++..      ..++ 
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~--------------~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~   81 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI--------------ARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDP   81 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE--------------CCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCG
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE--------------EcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCH
Confidence            35689999999999999999999999988773              23344444443321121 22221      1122 


Q ss_pred             CCccccceEEeecccccccccccccccc-----ceEEEecCCCCCC
Q psy1913         351 DIMFDKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANGPLT  391 (535)
Q Consensus       351 ell~~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~p~T  391 (535)
                      +.. .+||++|-|.....+ .+-+..+.     -.+|+-..||--.
T Consensus        82 ~~~-~~~D~vilavk~~~~-~~~l~~l~~~l~~~~~iv~~~nGi~~  125 (318)
T 3hwr_A           82 SAV-QGADLVLFCVKSTDT-QSAALAMKPALAKSALVLSLQNGVEN  125 (318)
T ss_dssp             GGG-TTCSEEEECCCGGGH-HHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred             HHc-CCCCEEEEEcccccH-HHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence            222 489999999876644 33333332     2578888998744

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=88.40  E-value=0.23  Score=47.35  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~   43 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLD   43 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46899999998 58999999999999999998854

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=88.15  E-value=2.7  Score=43.04  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+.|+|.++ ...||+|.|.
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            4899999999999999999875 5799999874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=88.14  E-value=0.29  Score=47.83  Aligned_cols=46  Identities=17%  Similarity=0.054  Sum_probs=35.5

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +.++++.|.|. |-+|+++|+.|.+.|++|+.+             +.+.+.+.+..++.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~-------------~r~~~~~~~~~~~~   72 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALA-------------GRRLDALQETAAEI   72 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-------------ECCHHHHHHHHHHh
Confidence            57889999884 789999999999999999883             36666776666553

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.08  E-value=0.47  Score=48.87  Aligned_cols=31  Identities=26%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  216 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVG  216 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            58999999999999999999998999 89984

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=87.85  E-value=0.78  Score=44.37  Aligned_cols=34  Identities=12%  Similarity=0.244  Sum_probs=28.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++++|.|.|. |.+|+++|+.|++.|++|+.++
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~   43 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTC   43 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEe
Confidence            357899999995 8899999999999999999843

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=87.77  E-value=0.18  Score=48.34  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~   38 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLD   38 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            368999999995 8899999999999999988754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=87.70  E-value=0.63  Score=46.39  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=47.8

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCC-CcccCC--CC
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPG-TKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~-a~~i~~--el  352 (535)
                      .|++|.|.|. |.+|..+++++...|++|+++             +.+.+.+... ++.|.  +.++.. ......  ++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~-------------~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA-------------AGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEE-------------ESSHHHHHHH-HHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHH-HhcCCcEEEecCCHHHHHHHHHHH
Confidence            5899999997 999999999999999999984             3555555544 34332  111211 100000  11


Q ss_pred             ccccceEEeeccccc
Q psy1913         353 MFDKVDILVPAAIEK  367 (535)
Q Consensus       353 l~~~~DILiPaA~~~  367 (535)
                      ....+|++|-|+...
T Consensus       211 ~~~~~d~vi~~~g~~  225 (333)
T 1v3u_A          211 SPDGYDCYFDNVGGE  225 (333)
T ss_dssp             CTTCEEEEEESSCHH
T ss_pred             hCCCCeEEEECCChH
Confidence            123689999998653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.69  E-value=0.51  Score=44.49  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .+..++|+|.|.|++|..+|+.|.+.|.+|+.
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~   47 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTY   47 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            35788999999999999999999999998876

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=87.49  E-value=1.2  Score=45.80  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  244 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILS  244 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            58999999999999999999999999 88883

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=87.37  E-value=0.58  Score=46.84  Aligned_cols=31  Identities=19%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|.+|.|.|. |.+|..+++++...|++|+++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~  186 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGS  186 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            5899999997 999999999999999999984

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=87.07  E-value=0.19  Score=50.85  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=61.2

Q ss_pred             cEEEEEccccHHHH-HHH-HHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-
Q psy1913         281 KTYIVQGFGNVGFH-AAR-YFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-  354 (535)
Q Consensus       281 ~~VaIQGfGnVG~~-~A~-~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-  354 (535)
                      .+|+|.|+|++|.. .+. .|.. .+++|++|+|.+     ++-       . +.      ...+++...+++  +++. 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~-----~~~-------~-~~------~~~~~~~~~~~~~~~ll~~   63 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH-----AKP-------E-EQ------APIYSHIHFTSDLDEVLND   63 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSS-----CCG-------G-GG------SGGGTTCEEESCTHHHHTC
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCC-----HhH-------H-HH------HHhcCCCceECCHHHHhcC
Confidence            58999999999984 566 4343 589999998864     111       1 11      112234444444  5665 


Q ss_pred             ccceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHHH---HHhCCceee
Q psy1913         355 DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHAM---LLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~i---L~~rGI~vi  406 (535)
                      .++|+++-|+. +..+.+.+...   ...++||   -|+  | .+++++   .+++|+.+.
T Consensus        64 ~~~D~V~i~tp-~~~h~~~~~~al~aGk~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~  120 (345)
T 3f4l_A           64 PDVKLVVVCTH-ADSHFEYAKRALEAGKNVLVE---KPFTPTLAQAKELFALAKSKGLTVT  120 (345)
T ss_dssp             TTEEEEEECSC-GGGHHHHHHHHHHTTCEEEEC---SSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCEEEEcCC-hHHHHHHHHHHHHcCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            47999998884 34454444332   2478888   443  2 344443   456777654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.83  E-value=1.4  Score=44.06  Aligned_cols=71  Identities=14%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC-CCccc-CC-CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP-GTKSA-PT-DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~-~a~~i-~~-ell~~  355 (535)
                      ++|+|.|.|.||..+|..|...|.  .|+.             -|+|.+.+............|. ..+.. +. +-+ .
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L-------------~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~-~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVL-------------VDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSEL-A   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEE-------------ECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGG-T
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEE-------------EeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHh-C
Confidence            479999999999999999999997  7776             4466665543322211111111 11111 12 222 4


Q ss_pred             cceEEeeccc
Q psy1913         356 KVDILVPAAI  365 (535)
Q Consensus       356 ~~DILiPaA~  365 (535)
                      +||++|-|+.
T Consensus        67 ~aDvVIi~~~   76 (304)
T 2v6b_A           67 DAQVVILTAG   76 (304)
T ss_dssp             TCSEEEECC-
T ss_pred             CCCEEEEcCC
Confidence            8999999984

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=86.82  E-value=0.9  Score=45.21  Aligned_cols=48  Identities=21%  Similarity=0.264  Sum_probs=40.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      -|+||++.|.|. +..|+.+|+.|++.|++|+.             +|.+.+.|.+..++.+
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i-------------~~r~~~~l~~~~~~~g   74 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFI-------------TGRRKDVLDAAIAEIG   74 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHHC
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHcC
Confidence            489999999995 56999999999999999988             5577888888776654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=86.82  E-value=0.41  Score=48.13  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC-------CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC------
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR-------AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT------  345 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G-------akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a------  345 (535)
                      ..++|+|.|.|++|..+|..|.+.|       ..|+. .|.+-..   .+  -.  .+....+........++.      
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~-~~r~~~~---~~--~~--~~~~l~~~~~~~~~~~~~~~~~~~   78 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTM-WVFEEDI---GG--KK--LTEIINTQHENVKYLPGHKLPPNV   78 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEE-ECCCCBS---SS--SB--HHHHHHHHSCCTTTSTTCCCCTTE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEE-EEcChhh---hh--hH--HHHHHHhcCcccccCCcccCccCe
Confidence            4469999999999999999999988       67654 3322110   00  00  222222222111111111      


Q ss_pred             cccCC--CCccccceEEeecccccccccccccc----cc-ceEEEecCCCC
Q psy1913         346 KSAPT--DIMFDKVDILVPAAIEKVIRKSNADK----VQ-AKIIVEAANGP  389 (535)
Q Consensus       346 ~~i~~--ell~~~~DILiPaA~~~~It~~na~~----i~-AkiIvEgAN~p  389 (535)
                      ...+.  +.+ .+||++|-|.....+. +-+..    ++ -.+|+.-.|+-
T Consensus        79 ~~~~~~~~~~-~~aD~Vilav~~~~~~-~v~~~i~~~l~~~~ivv~~~~Gi  127 (354)
T 1x0v_A           79 VAVPDVVQAA-EDADILIFVVPHQFIG-KICDQLKGHLKANATGISLIKGV  127 (354)
T ss_dssp             EEESSHHHHH-TTCSEEEECCCGGGHH-HHHHHHTTCSCTTCEEEECCCCB
T ss_pred             EEEcCHHHHH-cCCCEEEEeCCHHHHH-HHHHHHHhhCCCCCEEEEECCcc
Confidence            11121  222 4799999998764432 22222    32 35888888874

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=86.79  E-value=0.41  Score=49.99  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC---eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC-----CcccCCCCcccCC--
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA---KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG-----TIKGYPGTKSAPT--  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga---kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g-----~v~~~~~a~~i~~--  350 (535)
                      ++|+|.|.|.+|+.+++.|.+.|.   .|+. +|            -+.+.+.+..++.+     .+.... . .+++  
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v-~~------------r~~~~~~~la~~l~~~~~~~~~~~~-~-D~~d~~   66 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITL-AS------------RTLSKCQEIAQSIKAKGYGEIDITT-V-DADSIE   66 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEE-EE------------SCHHHHHHHHHHHHHTTCCCCEEEE-C-CTTCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEE-EE------------CCHHHHHHHHHHhhhhcCCceEEEE-e-cCCCHH
Confidence            489999999999999999999984   5554 33            55666655554321     111000 0 0111  


Q ss_pred             ---CCcc-ccceEEeeccccccccccccc---cccceEEEecCCC--CC-C-------HHHHHHHHhCCceeeccccccc
Q psy1913         351 ---DIMF-DKVDILVPAAIEKVIRKSNAD---KVQAKIIVEAANG--PL-T-------PAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       351 ---ell~-~~~DILiPaA~~~~It~~na~---~i~AkiIvEgAN~--p~-T-------~eA~~iL~~rGI~viPD~laNa  413 (535)
                         +++. .++|++|-||.... +..-+.   +-.+.+| .-++.  |. +       .+..+..+++|+.+++..=...
T Consensus        67 ~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vv-D~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~P  144 (405)
T 4ina_A           67 ELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYL-DTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDP  144 (405)
T ss_dssp             HHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEE-ESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTT
T ss_pred             HHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEE-EecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCc
Confidence               2332 25899999987532 211111   1123444 34332  21 1       1455667788988877654433

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=86.77  E-value=0.71  Score=45.99  Aligned_cols=92  Identities=12%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCcc------cCC-CC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTKS------APT-DI  352 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~~------i~~-el  352 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+. +       +       .+ +..++.|- +....+...      .++ +.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~-r-------~-------~~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~   66 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLL-R-------R-------DY-EAIAGNGLKVFSINGDFTLPHVKGYRAPEE   66 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEEC-S-------T-------TH-HHHHHTCEEEEETTCCEEESCCCEESCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEE-c-------C-------cH-HHHHhCCCEEEcCCCeEEEeeceeecCHHH
Confidence            579999999999999999999999887633 1       1       12 22233332 221111111      122 21


Q ss_pred             ccccceEEeecccccccccccccccc-----ceEEEecCCCCC
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ-----AKIIVEAANGPL  390 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~-----AkiIvEgAN~p~  390 (535)
                      . .++|+++-|.....+. +-++.++     -.+|+-.+||--
T Consensus        67 ~-~~~D~vilavk~~~~~-~~l~~l~~~l~~~~~iv~l~nGi~  107 (312)
T 3hn2_A           67 I-GPMDLVLVGLKTFANS-RYEELIRPLVEEGTQILTLQNGLG  107 (312)
T ss_dssp             H-CCCSEEEECCCGGGGG-GHHHHHGGGCCTTCEEEECCSSSS
T ss_pred             c-CCCCEEEEecCCCCcH-HHHHHHHhhcCCCCEEEEecCCCC
Confidence            2 4799999998766544 3333332     257888999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=86.76  E-value=0.28  Score=47.81  Aligned_cols=35  Identities=20%  Similarity=0.536  Sum_probs=30.4

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      ++++|+|.|.|.+|..+|+.|.+.|..-+.|.|.+
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46899999999999999999999998666667654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=86.66  E-value=0.62  Score=47.00  Aligned_cols=75  Identities=17%  Similarity=0.096  Sum_probs=47.7

Q ss_pred             CC--cEEEEEcc-ccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--
Q psy1913         279 EN--KTYIVQGF-GNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--  350 (535)
Q Consensus       279 ~g--~~VaIQGf-GnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--  350 (535)
                      .|  .+|.|.|. |.+|..+++++...|+ +|+++.             .+.+.+...+++.|.  +.++........  
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~-------------~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~  224 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGIC-------------GTHEKCILLTSELGFDAAINYKKDNVAEQLR  224 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEE-------------SCHHHHHHHHHTSCCSEEEETTTSCHHHHHH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEe-------------CCHHHHHHHHHHcCCceEEecCchHHHHHHH
Confidence            57  99999998 9999999999999999 998843             555565555443442  111111110000  


Q ss_pred             CCccccceEEeecccc
Q psy1913         351 DIMFDKVDILVPAAIE  366 (535)
Q Consensus       351 ell~~~~DILiPaA~~  366 (535)
                      ++....+|++|-|+..
T Consensus       225 ~~~~~~~d~vi~~~G~  240 (357)
T 2zb4_A          225 ESCPAGVDVYFDNVGG  240 (357)
T ss_dssp             HHCTTCEEEEEESCCH
T ss_pred             HhcCCCCCEEEECCCH
Confidence            1111268999999864

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=86.58  E-value=0.89  Score=46.21  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             CCcEEEEEccccHHHH-HHHHHHHC-CCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFH-AARYFRRG-RAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~-~A~~L~e~-GakVVaVsD~~  313 (535)
                      +-.+|+|+|+|++|.. .+..|.+. +++|+||+|.+
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~   40 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERS   40 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSS
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence            4479999999999986 67777664 89999999865

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=86.48  E-value=0.99  Score=45.35  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             CCcEEEEEccc-cHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CC
Q psy1913         279 ENKTYIVQGFG-NVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfG-nVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--el  352 (535)
                      .|.+|.|.|.| .+|..+++++... |++|+++             |.+.+.+...+ +.|.  +.++........  ++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~-------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~  235 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGV-------------DVREEAVEAAK-RAGADYVINASMQDPLAEIRRI  235 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEE-------------ESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEE-------------cCCHHHHHHHH-HhCCCEEecCCCccHHHHHHHH
Confidence            58999999998 9999999999998 9999883             35555554443 3331  111111111000  11


Q ss_pred             cc-ccceEEeecccccccccccccccc--ceEEEec
Q psy1913         353 MF-DKVDILVPAAIEKVIRKSNADKVQ--AKIIVEA  385 (535)
Q Consensus       353 l~-~~~DILiPaA~~~~It~~na~~i~--AkiIvEg  385 (535)
                      .. -.+|++|-|+..........+.++  .++|.=|
T Consensus       236 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          236 TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             hcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence            21 378999999875423333334342  4666544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=86.40  E-value=1.1  Score=45.70  Aligned_cols=75  Identities=16%  Similarity=0.054  Sum_probs=45.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccC-CCCcccCC--CCc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGY-PGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~-~~a~~i~~--ell  353 (535)
                      .+++|+|.|.|+||+.+|..|...|.  .|+-             .|++.+.+.-..........| +..+..+.  +- 
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l-------------~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a-   73 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGI-------------VDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSD-   73 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEE-------------ECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGG-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEE-------------EeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHH-
Confidence            57899999999999999999998876  5665             446666554332221111111 12221222  22 


Q ss_pred             cccceEEeeccccc
Q psy1913         354 FDKVDILVPAAIEK  367 (535)
Q Consensus       354 ~~~~DILiPaA~~~  367 (535)
                      -.+|||+|-||.-.
T Consensus        74 ~~~aDiVvi~ag~~   87 (326)
T 3vku_A           74 AKDADLVVITAGAP   87 (326)
T ss_dssp             GTTCSEEEECCCCC
T ss_pred             hcCCCEEEECCCCC
Confidence            35899998887643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.36  E-value=0.87  Score=41.00  Aligned_cols=33  Identities=15%  Similarity=0.186  Sum_probs=29.2

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .+++|.|.|. |.+|+++++.|.+.|++|++++-
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r   35 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence            3479999997 99999999999999999998753

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=86.35  E-value=1.1  Score=42.48  Aligned_cols=33  Identities=33%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~   39 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVA   39 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            468999999995 889999999999999998883

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=86.25  E-value=1.2  Score=41.80  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.|. |.+|+++|+.|.+.|++|+++.
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~   38 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVT   38 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence            478999999996 9999999999999999998843

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=86.06  E-value=1.2  Score=41.79  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|++|.|.|. |.+|+++++.|.+.|++|+.+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~   38 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVS   38 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            368999999996 8999999999999999998843

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=86.00  E-value=0.54  Score=47.40  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      -.+|+|.|+|++|+..++.|.+. +.++++|+|.+..-    .  +-          .       +....++  +++ .+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~----~--~~----------~-------gv~~~~d~~~ll-~~   58 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL----D--TK----------T-------PVFDVADVDKHA-DD   58 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC----S--SS----------S-------CEEEGGGGGGTT-TT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH----h--hc----------C-------CCceeCCHHHHh-cC
Confidence            46899999999999999999876 78999999874211    1  21          1       1121222  555 68


Q ss_pred             ceEEeeccccccccccccc-ccc--ceEEEecCCCCCCHHH
Q psy1913         357 VDILVPAAIEKVIRKSNAD-KVQ--AKIIVEAANGPLTPAA  394 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~-~i~--AkiIvEgAN~p~T~eA  394 (535)
                      +|+++-|..... +.+++. .++  ..+|+|-.=+...+++
T Consensus        59 ~DvViiatp~~~-h~~~~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           59 VDVLFLCMGSAT-DIPEQAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             CSEEEECSCTTT-HHHHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHCCCEEEECCCCcCCHHHH
Confidence            999999986653 334333 233  3677765333333454

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=85.89  E-value=1.5  Score=46.59  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc----CC-CCc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA----PT-DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i----~~-ell  353 (535)
                      .-++|.|.|.|++|+++|+.|. .+..|.-|=             -|.+....+.++.      +....+    +. ++|
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE-------------~d~~r~~~la~~l------~~~~Vi~GD~td~~~L  293 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLE-QTYSVKLIE-------------RNLQRAEKLSEEL------ENTIVFCGDAADQELL  293 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHT-TTSEEEEEE-------------SCHHHHHHHHHHC------TTSEEEESCTTCHHHH
T ss_pred             cccEEEEEcchHHHHHHHHHhh-hcCceEEEe-------------cCHHHHHHHHHHC------CCceEEeccccchhhH
Confidence            4579999999999999999985 456665532             5566666655543      222222    11 344


Q ss_pred             c----ccceEEeeccc---cccccccccccccceEEEecCCCCCCHHHHHHHHhCCcee
Q psy1913         354 F----DKVDILVPAAI---EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLI  405 (535)
Q Consensus       354 ~----~~~DILiPaA~---~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~v  405 (535)
                      .    .++|+||-++-   .|.+..--|.++.++-++--.|.|   +-..+++.-||-.
T Consensus       294 ~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~---~~~~l~~~~gid~  349 (461)
T 4g65_A          294 TEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRG---AYVDLVQGGVIDV  349 (461)
T ss_dssp             HHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCH---HHHHHHCSSSSCE
T ss_pred             hhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccccccc---chhhhhhccccce
Confidence            2    58999999887   455666667777776666566654   5556677777643

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=85.62  E-value=1.6  Score=41.41  Aligned_cols=29  Identities=10%  Similarity=-0.046  Sum_probs=25.4

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      |+++.|.| .|.+|+++|+.|++.|++|+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~   30 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVC   30 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            46788887 589999999999999999998

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.59  E-value=1.2  Score=43.35  Aligned_cols=45  Identities=16%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +|+|+++.|.|. |-+|+++|+.|++.|++|+.             .+.+.+.+.+..+
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~-------------~~r~~~~~~~~~~   68 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILI-------------NGTDPSRVAQTVQ   68 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-------------CCSCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHH
Confidence            478999999985 78999999999999999988             4466666655544

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=85.57  E-value=0.81  Score=48.25  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++++++|.|.|.|..|..+|++|+++|++|.+ +|.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~-~D~   40 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTV-NDG   40 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEE-EES
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEE-EeC
Confidence            46899999999999999999999999999886 454

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=85.52  E-value=0.56  Score=45.81  Aligned_cols=35  Identities=23%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      ++++|.|.|.|.+|..+++.|...|..-+.|.|.+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999888888764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=85.47  E-value=1.6  Score=43.53  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCc
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTK  346 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~  346 (535)
                      +..++.   .|.+|+|.|.|.+|..++..+... |++|+++.             .+.+++... ++.|.  +.++....
T Consensus       157 ~~~~~~---~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~-------------~~~~r~~~~-~~~Ga~~~i~~~~~~  219 (348)
T 4eez_A          157 KVSGVK---PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVD-------------INQDKLNLA-KKIGADVTINSGDVN  219 (348)
T ss_dssp             HHHTCC---TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEE-------------SCHHHHHHH-HHTTCSEEEEC-CCC
T ss_pred             cccCCC---CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEE-------------CcHHHhhhh-hhcCCeEEEeCCCCC
Confidence            344553   589999999999999999988765 78999843             555555333 33331  11221111


Q ss_pred             ccCC--CCc-cccceEEeeccccccccccccccc--cceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         347 SAPT--DIM-FDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       347 ~i~~--ell-~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      ..+.  ++. ...+|+.+.|+.....-......+  ..+++.-|.-.. .+..... +..+++.+.
T Consensus       220 ~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~  284 (348)
T 4eez_A          220 PVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPT-VVFDGVEVA  284 (348)
T ss_dssp             HHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHH-HHHSCCEEE
T ss_pred             HHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHH-HHhCCeEEE
Confidence            1111  111 246788888876543323333333  235555543222 2222222 345666554

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=85.47  E-value=1.2  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CCCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|.   |-+|+++|+.|++.|++|+.+.
T Consensus         5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~   41 (297)
T 1d7o_A            5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGT   41 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEee
Confidence            578999999997   6899999999999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=85.39  E-value=1.8  Score=43.41  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=28.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      .|.+|+|.|.|.||..+++++...|++|++
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~  193 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVA  193 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence            589999999999999999999999999998

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=85.34  E-value=0.31  Score=47.18  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +.+++|.|.|. |.+|+++|+.|++.|++|+++.
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~   36 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTA   36 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46789999985 8999999999999999998854

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.29  E-value=0.79  Score=46.35  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             CCcEEEEE-ccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQ-GFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQ-GfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|. |.|.||..+++++...|++|+++.
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~  199 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATA  199 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe
Confidence            58999999 689999999999999999999843

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=85.18  E-value=1.3  Score=42.93  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|-+|+++|+.|++.|++|+.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   41 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIV   41 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5889999999999999999873

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.16  E-value=1.5  Score=42.25  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   41 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLA   41 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            478999999995 789999999999999999873

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=85.12  E-value=1  Score=43.18  Aligned_cols=46  Identities=22%  Similarity=0.286  Sum_probs=36.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|+|+++.|.|. |.+|+++|+.|++.|++|+.+             +.+.+.+.+..++
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~-------------~r~~~~~~~~~~~   49 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVIT-------------GRTKEKLEEAKLE   49 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHH
Confidence            478999999985 789999999999999999883             3556666665544

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.10  E-value=1.4  Score=45.15  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=46.2

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc-cc-C-C-C
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK-SA-P-T-D  351 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~-~i-~-~-e  351 (535)
                      ...++|+|.|.|+||+.+|..|...|.  .|+-             .|++.+.+.....+......|+... .+ + + +
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L-------------~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELAL-------------VDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEE-------------ECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEE-------------EeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH
Confidence            456899999999999999999998886  5555             4466655544332211111232221 11 1 2 2


Q ss_pred             CccccceEEeecccc
Q psy1913         352 IMFDKVDILVPAAIE  366 (535)
Q Consensus       352 ll~~~~DILiPaA~~  366 (535)
                      - -.+|||+|-||.-
T Consensus        84 ~-~~~aDiVvi~aG~   97 (331)
T 4aj2_A           84 V-TANSKLVIITAGA   97 (331)
T ss_dssp             G-GTTEEEEEECCSC
T ss_pred             H-hCCCCEEEEccCC
Confidence            1 3699999877753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=85.06  E-value=1.1  Score=45.07  Aligned_cols=31  Identities=16%  Similarity=0.310  Sum_probs=28.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~  198 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVS  198 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            68999999999999999999999999 89983

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=85.01  E-value=0.21  Score=48.04  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHH--HHCCCeEEEEecC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYF--RRGRAKCLAIVEH  312 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L--~e~GakVVaVsD~  312 (535)
                      +.+|++   +..+|+|.|.|+.|..+++.+  .. |+++||+.|.
T Consensus        73 ~~lg~~---~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~  113 (211)
T 2dt5_A           73 HILGLN---RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDV  113 (211)
T ss_dssp             HHHTTT---SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEES
T ss_pred             HHhCcC---CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeC
Confidence            456764   457999999999999999863  34 8999999885

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=84.94  E-value=1.4  Score=42.11  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   42 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILL   42 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence            478999999985 789999999999999999873

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=84.85  E-value=1.4  Score=42.38  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~   38 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFC   38 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence            478999999984 789999999999999998873

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=84.82  E-value=5.3  Score=41.26  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      +...+|+|=|||-+|+.+++.+.+. ...||+|.|.
T Consensus         9 ~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~   44 (345)
T 2b4r_O            9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDP   44 (345)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             hhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCC
Confidence            4678999999999999999998875 4799999873

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.75  E-value=1.2  Score=43.72  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~   78 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAI   78 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            478999999995 78999999999999999886

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=84.73  E-value=0.75  Score=51.77  Aligned_cols=39  Identities=23%  Similarity=0.138  Sum_probs=33.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      =++|+|+|.|++|..+|..|.+.|..|+.             .|.+.+.+.+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l-------------~D~~~~~~~~  352 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILM-------------KDINEHGIEQ  352 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEE-------------EECCHHHHHH
Confidence            46899999999999999999999999887             5566666654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=84.69  E-value=1.3  Score=45.41  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=28.1

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCC-CeEEEEecC
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGR-AKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~G-akVVaVsD~  312 (535)
                      .+|+|.| +|.||+.+++.|.+.. ..|++|.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~   38 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR   38 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc
Confidence            6899999 8999999999998764 589998874

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=84.66  E-value=1.1  Score=43.38  Aligned_cols=47  Identities=15%  Similarity=0.140  Sum_probs=38.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+             +.+.+.+.+..++.
T Consensus        27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~-------------~r~~~~~~~~~~~~   74 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIA-------------DLAAEKGKALADEL   74 (281)
T ss_dssp             GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-------------eCChHHHHHHHHHh
Confidence            468999999985 789999999999999999883             36667776666553

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=84.60  E-value=0.87  Score=44.56  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      |++++|.|.|. |.+|+++++.|.+.|++|+++.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~   34 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGAD   34 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE
Confidence            35789999996 9999999999999999998864

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=84.55  E-value=1.4  Score=43.02  Aligned_cols=46  Identities=33%  Similarity=0.308  Sum_probs=37.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.             .+.+.+.+.+..++
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~-------------~~r~~~~~~~~~~~   51 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVV-------------TARNGNALAELTDE   51 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE-------------CCSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            478999999985 78999999999999999988             55777777666554

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=84.53  E-value=1.4  Score=46.17  Aligned_cols=117  Identities=16%  Similarity=0.108  Sum_probs=70.4

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--c--ccCCCCc-c----cC
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--I--KGYPGTK-S----AP  349 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v--~~~~~a~-~----i~  349 (535)
                      ++|+|.|+ |.+|...+..+.+. +++|+|++           ++-|++.|.+..++++.  +  .+-.... .    +.
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~-----------a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~   72 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGIS-----------FHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWK   72 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEE-----------ESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEE
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEE-----------ccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHcc
Confidence            78999995 99999999999886 78999987           55889999988887752  1  0100110 0    11


Q ss_pred             C-----CCcc-ccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHH----HHhCCceeecc
Q psy1913         350 T-----DIMF-DKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAM----LLKKNVLIIPD  408 (535)
Q Consensus       350 ~-----ell~-~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~i----L~~rGI~viPD  408 (535)
                      .     ++.. .++|+++-|..+..=-.-....+++.--+=-||--+.-.+.++    .+++|+.++|-
T Consensus        73 G~~~l~el~~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~llPV  141 (376)
T 3a06_A           73 GSHSIEEMLEALKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPV  141 (376)
T ss_dssp             STTHHHHHHHHHCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEEEEC
T ss_pred             CHHHHHHHhcCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEEEEE
Confidence            1     2333 3589988875433222222333444333344565443333333    34567777774

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=84.53  E-value=0.77  Score=47.26  Aligned_cols=32  Identities=13%  Similarity=0.377  Sum_probs=29.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+++.|.+. +..||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~   35 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT   35 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999876 6999999985

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=84.53  E-value=1.2  Score=42.03  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~   44 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLL   44 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence            478999999995 899999999999999999884

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=84.50  E-value=1.4  Score=44.20  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             CCcEEEEE-ccccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQ-GFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQ-GfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|.+|+|. |.|.||..+++++...|++|+++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~  181 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITT  181 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEE
Confidence            58999999 79999999999999999999994

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=84.48  E-value=1.5  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.| .|.+|+++|+.|.+.|++|+++.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~   42 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILID   42 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            36889999998 58999999999999999998843

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=84.45  E-value=1.5  Score=49.40  Aligned_cols=39  Identities=23%  Similarity=0.133  Sum_probs=33.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTY  332 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~  332 (535)
                      ++|+|.|.|.+|..+|..|.+.|..|+.             .|.+.+.+.+.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l-------------~D~~~~~~~~~  351 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVIL-------------KEVNEKFLEAG  351 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEE-------------ECSSHHHHHHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEE-------------EECCHHHHHHH
Confidence            5799999999999999999999999988             55776666543

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=84.44  E-value=1.1  Score=43.59  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEcc-----------------ccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGF-----------------GNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGf-----------------GnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|+|++|.|.|-                 |..|+.+|+.|.+.|++|+.++..
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999998                 789999999999999999987543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=84.39  E-value=1.6  Score=41.52  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~   37 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIA   37 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=84.31  E-value=1.7  Score=46.90  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=67.9

Q ss_pred             CCchHHHHHHHHHHHHhcHHH--HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCC
Q psy1913         248 ESATGRGVFTAAEILVNNEEY--MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEIN  325 (535)
Q Consensus       248 ~~aTg~GV~~~i~~~l~~~~~--~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLD  325 (535)
                      ..-.+.|...+++.+++....  ...-. ..+++++++.|.|.|.+|+.+|..|++.|++|+. ++            -+
T Consensus       331 ~nTD~~G~~~~l~~~~~~~~~~~~~~~~-~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i-~~------------R~  396 (523)
T 2o7s_A          331 YNTDCIGSISAIEDGLRSSGDPSSVPSS-SSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVI-AN------------RT  396 (523)
T ss_dssp             ECCHHHHHHHHHHHHC--------------------CEEEECCSHHHHHHHHHHHHHCC-CEE-EE------------SS
T ss_pred             EcCCHHHHHHHHHHhhhhcccccccccc-ccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEE-EE------------CC
Confidence            344556777777654321000  00000 1246889999999999999999999999998765 22            45


Q ss_pred             HHHHHHHHHHcC-CcccCCCCcccCC--CCccccceEEeecccccc---ccccccc--cc-cceEEEecCCCC-CCHHHH
Q psy1913         326 YKDLHTYKITKG-TIKGYPGTKSAPT--DIMFDKVDILVPAAIEKV---IRKSNAD--KV-QAKIIVEAANGP-LTPAAH  395 (535)
Q Consensus       326 i~~L~~~~~~~g-~v~~~~~a~~i~~--ell~~~~DILiPaA~~~~---It~~na~--~i-~AkiIvEgAN~p-~T~eA~  395 (535)
                      .+.+.+..++.+ .+..      ++.  ++....+||+|-||.-+.   ++.....  .+ ....+.+-.=.| .||-..
T Consensus       397 ~~~a~~la~~~~~~~~~------~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~  470 (523)
T 2o7s_A          397 YERALELAEAIGGKALS------LTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLR  470 (523)
T ss_dssp             HHHHHHHHHHTTC-CEE------TTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHH
T ss_pred             HHHHHHHHHHcCCceee------HHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHH
Confidence            566666655542 1111      121  111235899999986322   1111111  11 235666663334 565433


Q ss_pred             HHHHhCCcee
Q psy1913         396 AMLLKKNVLI  405 (535)
Q Consensus       396 ~iL~~rGI~v  405 (535)
                      +. .++|..+
T Consensus       471 ~a-~~~G~~~  479 (523)
T 2o7s_A          471 EA-EESGAIT  479 (523)
T ss_dssp             HH-HTTTCEE
T ss_pred             HH-HHCCCEE
Confidence            32 3456543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=84.30  E-value=1.7  Score=41.19  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~   38 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACD   38 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            47899999998 58999999999999999998843

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=84.27  E-value=1.6  Score=41.24  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=29.6

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~   44 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIAD   44 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence            6789999998 58999999999999999998853

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=84.26  E-value=0.52  Score=46.12  Aligned_cols=85  Identities=11%  Similarity=0.066  Sum_probs=48.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC-C-CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP-T-DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~-~-ell~~~~D  358 (535)
                      ++|.|+|.|++|..+++.|.+. ..|+.|.|            .+.+.+.+..+..+.        ..+ . +++ .+||
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~------------~~~~~~~~~~~~~g~--------~~~~~~~~~-~~~D   60 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILS------------RSIDRARNLAEVYGG--------KAATLEKHP-ELNG   60 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEEC------------SSHHHHHHHHHHTCC--------CCCSSCCCC-C---
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEe------------CCHHHHHHHHHHcCC--------ccCCHHHHH-hcCC
Confidence            4689999999999999999877 76654333            455666666554432        112 2 444 3799


Q ss_pred             EEeeccccccccccccccc--cceEEEecCCC
Q psy1913         359 ILVPAAIEKVIRKSNADKV--QAKIIVEAANG  388 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i--~AkiIvEgAN~  388 (535)
                      ++|-|.....+ .+-+..+  .-++|+.-+.+
T Consensus        61 vVilav~~~~~-~~v~~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           61 VVFVIVPDRYI-KTVANHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             CEEECSCTTTH-HHHHTTTCCSSCCEEECCSS
T ss_pred             EEEEeCChHHH-HHHHHHhccCCCEEEECCCC
Confidence            99999877653 3444444  23466655533

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=84.14  E-value=0.96  Score=44.67  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=32.8

Q ss_pred             CCCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         275 EPCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       275 ~~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +.++++++|.|.|. |-+|+++++.|.+.|++|+++.-
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r   52 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDN   52 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEEC
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            44688999999996 99999999999999999998653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=84.12  E-value=0.72  Score=43.11  Aligned_cols=32  Identities=13%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++|.|.| .|.+|+++++.|.+.|++|+.+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~   36 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMA   36 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence            467888887 68999999999999999998843

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=84.09  E-value=1.6  Score=41.69  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLV   37 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            468999999984 899999999999999999884

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=84.04  E-value=1.7  Score=41.68  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFG   37 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=84.00  E-value=1.6  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|++|.|.|. |-+|+++|+.|++.|++|+.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~   38 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIA   38 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEE
Confidence            478999999995 899999999999999999883

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=83.87  E-value=0.8  Score=46.48  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~  211 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMAN  211 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            38999999999999999999999999998854

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=83.87  E-value=1.7  Score=41.58  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~   39 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTC   39 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            36899999998 5899999999999999999884

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=83.84  E-value=0.56  Score=47.02  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----cc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FD  355 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~  355 (535)
                      ..+|+|.|+|.+|+.+++.|.+.|. |+.|             |-|.+.+. ..+ .+. .-+.+ ...+.+.|    -.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vi-------------d~~~~~~~-~~~-~~~-~~i~g-d~~~~~~L~~a~i~  176 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLA-------------EDENVRKK-VLR-SGA-NFVHG-DPTRVSDLEKANVR  176 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEE-------------SCGGGHHH-HHH-TTC-EEEES-CTTSHHHHHHTCST
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEE-------------eCChhhhh-HHh-CCc-EEEEe-CCCCHHHHHhcChh
Confidence            4589999999999999999999998 7763             24445554 332 221 00000 11111222    24


Q ss_pred             cceEEeecccccc---ccccccccc--cceEEEecCCCCCCHHHHHHHHhCCce--eecc
Q psy1913         356 KVDILVPAAIEKV---IRKSNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVL--IIPD  408 (535)
Q Consensus       356 ~~DILiPaA~~~~---It~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~--viPD  408 (535)
                      ++|.++-+...+.   .....+.++  +.++|+..-|    ++..+.|++.|+.  +.|.
T Consensus       177 ~a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~----~~~~~~l~~~G~d~vi~~~  232 (336)
T 1lnq_A          177 GARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGADQVISPF  232 (336)
T ss_dssp             TEEEEEECCSSHHHHHHHHHHHHTTCTTSEEEEECSS----GGGHHHHHHTTCSEEECHH
T ss_pred             hccEEEEcCCccHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHcCCCEEEChh
Confidence            7899888775432   223334444  2478887643    3445678888874  4454

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=83.75  E-value=0.49  Score=48.40  Aligned_cols=28  Identities=11%  Similarity=0.051  Sum_probs=25.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-------CeEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-------AKCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-------akVVa  308 (535)
                      ++|+|.|.|++|..+|..|.+.|       ..|+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~   56 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRM   56 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEE
Confidence            47999999999999999999988       77765

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=83.74  E-value=1.4  Score=40.75  Aligned_cols=92  Identities=16%  Similarity=0.075  Sum_probs=55.5

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccc
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~  357 (535)
                      ++|+|.| .|++|+.+++.|.+.|.+|+.+             |-+.+.+.+..+..+....-.... .+.  +.+ .+|
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~-------------~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~   65 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVG-------------SRREEKAEAKAAEYRRIAGDASIT-GMKNEDAA-EAC   65 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEE-------------ESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHH-HHC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHHhccccccCCCC-hhhHHHHH-hcC
Confidence            3799999 9999999999999999998773             244455544443322000000011 111  222 479


Q ss_pred             eEEeeccccccccccccccc----cceEEEecCCC
Q psy1913         358 DILVPAAIEKVIRKSNADKV----QAKIIVEAANG  388 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i----~AkiIvEgAN~  388 (535)
                      |++|-|.....+. +-+..+    +-++|+..+|+
T Consensus        66 D~Vi~~~~~~~~~-~~~~~l~~~~~~~~vi~~~~g   99 (212)
T 1jay_A           66 DIAVLTIPWEHAI-DTARDLKNILREKIVVSPLVP   99 (212)
T ss_dssp             SEEEECSCHHHHH-HHHHHTHHHHTTSEEEECCCC
T ss_pred             CEEEEeCChhhHH-HHHHHHHHHcCCCEEEEcCCC
Confidence            9999998765532 333333    34688888875

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=83.67  E-value=0.75  Score=46.22  Aligned_cols=71  Identities=17%  Similarity=0.054  Sum_probs=44.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc-ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF-DKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~-~~~  357 (535)
                      .+|+|+|+|..|...++.| ..+++|+||+|.+     +   +-..+++.+..++.|-     +...+++  +++. .++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~-----~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~v   68 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGV-----P---EEDLSKLEKAISEMNI-----KPKKYNNWWEMLEKEKP   68 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSS-----T---TCCCHHHHHHHHTTTC-----CCEECSSHHHHHHHHCC
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCC-----c---hhhHHHHHHHHHHcCC-----CCcccCCHHHHhcCCCC
Confidence            5899999999988777777 7789999999864     1   0122344444433331     1222333  5554 467


Q ss_pred             eEEeeccc
Q psy1913         358 DILVPAAI  365 (535)
Q Consensus       358 DILiPaA~  365 (535)
                      |+++-|+.
T Consensus        69 D~V~I~tp   76 (337)
T 3ip3_A           69 DILVINTV   76 (337)
T ss_dssp             SEEEECSS
T ss_pred             CEEEEeCC
Confidence            77777653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=83.57  E-value=1.6  Score=44.86  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC-Cccc--CC-CC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG-TKSA--PT-DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~-a~~i--~~-el  352 (535)
                      ..++|+|.|.|+||+.+|..|...|.  .|+-             .|++.+.+............|+. ....  +. +-
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L-------------~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVAL-------------VDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEE-------------ECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEE-------------EECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH
Confidence            45799999999999999999998886  6665             44666555443221100001221 1111  12 22


Q ss_pred             ccccceEEeeccccc
Q psy1913         353 MFDKVDILVPAAIEK  367 (535)
Q Consensus       353 l~~~~DILiPaA~~~  367 (535)
                       -.+|||.|-||.-.
T Consensus        87 -~~daDiVIitaG~p  100 (330)
T 3ldh_A           87 -SAGSKLVVITAGAR  100 (330)
T ss_dssp             -CSSCSEEEECCSCC
T ss_pred             -hCCCCEEEEeCCCC
Confidence             36999999887644

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=83.55  E-value=1.6  Score=41.68  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=36.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +++|+++.|.|. |.+|+++|+.|.+.|++|+.             .+.+.+.+.+..++
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~-------------~~r~~~~~~~~~~~   49 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAF-------------SDINEAAGQQLAAE   49 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHH
Confidence            478999999984 89999999999999999988             33556666555444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=83.55  E-value=1.3  Score=41.70  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.| .|.+|+++|+.|++.|++|+.+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~   36 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTA   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            6789999998 48899999999999999998844

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=83.50  E-value=1.8  Score=41.47  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALL   37 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999998874

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=83.50  E-value=8.6  Score=39.58  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .+|+|=|||-+|+.+.|.+.+.   ...||||-|.
T Consensus         3 ~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~   37 (335)
T 3doc_A            3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS
T ss_pred             EEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            4899999999999999998886   5789999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.47  E-value=1.3  Score=42.68  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|-+|+++|+.|++.|++|+.+
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   40 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVA   40 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5889999999999999999884

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=83.45  E-value=1.8  Score=41.41  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   37 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLF   37 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence            36889999998 5899999999999999999884

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=83.39  E-value=2  Score=40.03  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~   37 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVAS   37 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEec
Confidence            57899999995 7899999999999999988754

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=83.37  E-value=1.4  Score=42.12  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~   39 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGT   39 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            468999999985 789999999999999999884

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=83.36  E-value=1.7  Score=41.58  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   42 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIA   42 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5789999999999999999883

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=83.34  E-value=0.99  Score=43.66  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +.+++|.|.|. |.+|+++++.|.+.|++|++++-
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   39 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDD   39 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEec
Confidence            46789999997 99999999999999999998653

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=83.27  E-value=1.2  Score=41.80  Aligned_cols=34  Identities=24%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++++|.|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~   37 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGS   37 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            5789999998 589999999999999999998644

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=83.22  E-value=1.3  Score=44.92  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|.|.|. |.+|..+++++...|++|+++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~  202 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTA  202 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            5899999997 9999999999999999999843

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=83.20  E-value=2.1  Score=43.00  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ..++.   .|.+|+|.|.|.||..+++++...|++|+++
T Consensus       163 ~~~~~---~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~  198 (352)
T 1e3j_A          163 RAGVQ---LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT  198 (352)
T ss_dssp             HHTCC---TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             hcCCC---CCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            44554   5899999999999999999999999998773

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=83.20  E-value=1.8  Score=41.81  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         276 PCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       276 ~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .+++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~   51 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVA   51 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            468899999998 5899999999999999999884

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=83.13  E-value=3  Score=40.87  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.+.
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~   38 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFA   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE
Confidence            589999999995 6799999999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=83.13  E-value=1  Score=44.87  Aligned_cols=31  Identities=23%  Similarity=0.110  Sum_probs=27.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++|+|+|.|.+|..+|..|++.|.+|+. .|.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v-~Er   32 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTI-YER   32 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-ECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEE-Eec
Confidence            5899999999999999999999999765 453

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.11  E-value=1.7  Score=42.78  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|++|.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~   61 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLS   61 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            478999999995 789999999999999999884

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=83.11  E-value=14  Score=37.91  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|=|||-+|+.+.|.+.+. ...||||-|.
T Consensus         2 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~   34 (332)
T 3pym_A            2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDP   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHSTTCEEEEEECT
T ss_pred             eEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCC
Confidence            4899999999999999988876 5899999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=83.11  E-value=1.3  Score=45.21  Aligned_cols=73  Identities=16%  Similarity=0.069  Sum_probs=45.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHH--cCCcccC-CCCcccC-C-C
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKIT--KGTIKGY-PGTKSAP-T-D  351 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~--~g~v~~~-~~a~~i~-~-e  351 (535)
                      ..++|+|.|.|+||+.+|..|...|.  .|+.             .|+|.+.+......  .+ ..-+ ...+..+ + +
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l-------------~D~~~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~   69 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVV-------------IDVNKEKAMGDVMDLNHG-KAFAPQPVKTSYGTYE   69 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEE-------------ECSCHHHHHHHHHHHHHT-GGGSSSCCEEEEECGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEE-------------EecchHHHHHHHHHHHhc-cccccCCeEEEeCcHH
Confidence            35799999999999999999998886  6666             45666655442211  11 1111 1112112 1 2


Q ss_pred             CccccceEEeecccc
Q psy1913         352 IMFDKVDILVPAAIE  366 (535)
Q Consensus       352 ll~~~~DILiPaA~~  366 (535)
                      - -.+|||+|-||..
T Consensus        70 a-~~~aDvVvi~ag~   83 (326)
T 3pqe_A           70 D-CKDADIVCICAGA   83 (326)
T ss_dssp             G-GTTCSEEEECCSC
T ss_pred             H-hCCCCEEEEeccc
Confidence            2 2589999888754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=83.10  E-value=1  Score=48.13  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      .+|+|+|.|-||.-+|-.|++.|.+|++             -|+|.+.+..+.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g-------------~Did~~kV~~ln   61 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVG-------------YDVNPSIVERLR   61 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEE-------------ECSCHHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEE-------------EECCHHHHHHHH
Confidence            5899999999999999999999999999             667777766654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=83.09  E-value=1.9  Score=41.44  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   43 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLV   43 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=83.09  E-value=2  Score=41.71  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      +++++++.|.|. |.+|+++|+.|++.|++|+.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~   58 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFI   58 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence            368999999984 89999999999999999988

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=83.08  E-value=1.3  Score=45.03  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            58899999999999999999999999 68874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=83.08  E-value=1  Score=45.67  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|.|.| .|.||..+++++...|++|+++.
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  195 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTC  195 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEE
Confidence            589999999 79999999999999999999843

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=83.06  E-value=1.1  Score=43.98  Aligned_cols=73  Identities=21%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC----CcccCC---C
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG----TKSAPT---D  351 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~----a~~i~~---e  351 (535)
                      .|+|.|.| .+.+|+.+|+.|++.|++|+.             +|.|.+.+.+..++.+.+..+..    ...+..   +
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~-------------~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~   68 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCF-------------IDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEY   68 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEE-------------EeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHH
Confidence            37899988 577999999999999999988             56888888777766543322211    111111   1


Q ss_pred             Ccc--ccceEEeeccc
Q psy1913         352 IMF--DKVDILVPAAI  365 (535)
Q Consensus       352 ll~--~~~DILiPaA~  365 (535)
                      +.+  -..||||-+|.
T Consensus        69 ~~~~~g~iDiLVNNAG   84 (247)
T 3ged_A           69 AMEKLQRIDVLVNNAC   84 (247)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            111  36899999885

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=83.03  E-value=0.88  Score=45.62  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|.|.| .||..+++++...|++|+++.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~  176 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVT  176 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe
Confidence            58999999987 999999999999999999854

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=82.99  E-value=1.4  Score=42.58  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   50 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLS   50 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            368999999984 789999999999999998873

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=82.98  E-value=1.4  Score=42.19  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|++|.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~   59 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLT   59 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999998874

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=82.96  E-value=1.4  Score=42.62  Aligned_cols=34  Identities=12%  Similarity=0.124  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|.   |.+|+++|+.|.+.|++|+.+.
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~   39 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTY   39 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            367899999997   6999999999999999988754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=82.89  E-value=1.2  Score=44.32  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=28.8

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|++|.|.| .|.+|..+++++...|++|+++
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~  171 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGT  171 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEE
Confidence            589999999 7999999999999999999984

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=82.88  E-value=2  Score=42.88  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=29.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|++|+++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~  196 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAV  196 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            5899999999999999999999999999994

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=82.87  E-value=1  Score=44.75  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--ell  353 (535)
                      .|.+|.|.| .|.+|..+++++...|++|+++.             .+.+++...+ +.|.  +.++........  ++.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~-------------~~~~~~~~~~-~~Ga~~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTV-------------SSPEKAAHAK-ALGAWETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE-------------SSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEe-------------CCHHHHHHHH-HcCCCEEEeCCCccHHHHHHHHh
Confidence            589999999 89999999999999999999844             4555554443 3331  111111111100  111


Q ss_pred             -cccceEEeeccccccccccccccc--cceEEEecC
Q psy1913         354 -FDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAA  386 (535)
Q Consensus       354 -~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgA  386 (535)
                       ...+|+++-|+....+ ......+  ..++|.=|.
T Consensus       206 ~~~g~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDTW-LTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             TTCCEEEEEESSCGGGH-HHHHTTEEEEEEEEECCC
T ss_pred             CCCCceEEEECCChHHH-HHHHHHhcCCCEEEEEec
Confidence             1379999999875322 2222333  246665544

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=82.84  E-value=1.5  Score=44.39  Aligned_cols=75  Identities=15%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--ell  353 (535)
                      .|.+|+|.| .|.+|..+++++...|++|+++             +.+.+.+... ++.|.  +.++........  ++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~-------------~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVT-------------AGSQKKLQMA-EKLGAAAGFNYKKEDFSEATLKFT  227 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEE-------------eCCHHHHHHH-HHcCCcEEEecCChHHHHHHHHHh
Confidence            589999999 7999999999999999999983             3555555444 33331  111111111100  111


Q ss_pred             -cccceEEeeccccc
Q psy1913         354 -FDKVDILVPAAIEK  367 (535)
Q Consensus       354 -~~~~DILiPaA~~~  367 (535)
                       ...+|++|-|+...
T Consensus       228 ~~~~~d~vi~~~G~~  242 (354)
T 2j8z_A          228 KGAGVNLILDCIGGS  242 (354)
T ss_dssp             TTSCEEEEEESSCGG
T ss_pred             cCCCceEEEECCCch
Confidence             13689999998654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=82.82  E-value=1.8  Score=43.65  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCe-EEE
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK-CLA  308 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Gak-VVa  308 (535)
                      +..++.   .|.+|+|+|.|.||..+++++...|++ |++
T Consensus       173 ~~~~~~---~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~  209 (363)
T 3m6i_A          173 QRAGVR---LGDPVLICGAGPIGLITMLCAKAAGACPLVI  209 (363)
T ss_dssp             HHHTCC---TTCCEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHcCCC---CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            345554   589999999999999999999999998 777

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=82.80  E-value=0.95  Score=43.38  Aligned_cols=31  Identities=13%  Similarity=0.096  Sum_probs=28.8

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++|.|.|.|.+|+++++.|.+.|++|++++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~   35 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTS   35 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            3799999999999999999999999999975

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=82.80  E-value=1.6  Score=41.76  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEcc-cc--HHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GN--VGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-Gn--VG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |.  +|+++|+.|++.|++|+.+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~   40 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTY   40 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEec
Confidence            478999999996 55  99999999999999988753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=82.75  E-value=1.2  Score=44.46  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|.|.| .|.+|..+++++...|++|+++.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~  180 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVA  180 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            589999999 89999999999999999999843

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=82.73  E-value=0.93  Score=44.76  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=27.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ++++++|.|.|. |.+|+++++.|.+.|++|+++.-
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r   51 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDL   51 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeC
Confidence            467899999997 99999999999999999998754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=82.73  E-value=1.6  Score=41.87  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+.+.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            478999999995 789999999999999999986543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=82.71  E-value=1.3  Score=42.72  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEc---cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG---FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG---fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|   .|.+|+++|+.|++.|++|+.+
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~   39 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLT   39 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEE
Confidence            36899999999   5999999999999999998874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=82.62  E-value=1.7  Score=43.94  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~  210 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS  210 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            58999999999999999999999999988854

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=82.56  E-value=2  Score=41.42  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~   62 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWD   62 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence            57899999998 58999999999999999998843

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=82.31  E-value=1.4  Score=46.49  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCC---eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcc
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRA---KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMF  354 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~Ga---kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~  354 (535)
                      ...+|.|.|+ |+||..+++.+...|+   .|..               +|...-     ..|       +. +. ++  
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v---------------~D~~~~-----~~g-------~~-~~-~i--  261 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILK---------------WDIKET-----SRG-------GP-FD-EI--  261 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEE---------------ECHHHH-----TTC-------SC-CT-HH--
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEE---------------eecccc-----ccC-------Cc-hh-hH--
Confidence            4678999999 9999999999999998   6766               554431     111       11 11 12  


Q ss_pred             ccceEEeeccc-----cccccccccccc-c-ceEEEecC
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKV-Q-AKIIVEAA  386 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i-~-AkiIvEgA  386 (535)
                      .++||+|-|++     +..||.+-+.++ + -.+||+-|
T Consensus       262 ~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          262 PQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             HHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             hhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            38999999998     566777766666 3 24555443

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.27  E-value=1.5  Score=42.26  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~   40 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN   40 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence            478999999995 789999999999999999883

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=82.24  E-value=2  Score=41.66  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+.++
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~   57 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIAS   57 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            47899999998 58999999999999999998843

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=82.19  E-value=1.3  Score=43.41  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=26.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~   63 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVIT   63 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            578999999984 789999999999999999884

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=82.18  E-value=1.9  Score=41.82  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|+|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~   57 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIA   57 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            478999999995 689999999999999999884

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=82.14  E-value=1.4  Score=42.28  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   42 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVT   42 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            578999999984 889999999999999998873

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=82.14  E-value=1.4  Score=42.30  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.|.   |.+|+++|+.|.+.|++|+.+.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~   41 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSY   41 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence            468999999997   6999999999999999988753

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=82.00  E-value=1.5  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.|. |.+|+++++.|.+.|++|+++.
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~   42 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSD   42 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEc
Confidence            368899999984 8999999999999999998843

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.99  E-value=2.1  Score=41.38  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~   46 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACD   46 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            578999999994 7899999999999999998753

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=81.94  E-value=2.2  Score=41.25  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~   51 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTC   51 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=81.86  E-value=2.1  Score=43.67  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~  225 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT  225 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            58999999999999999999999999988844

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=81.84  E-value=3.3  Score=42.21  Aligned_cols=33  Identities=21%  Similarity=0.096  Sum_probs=31.0

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +.|++|.|.|.|..|+.+++.+.+.|.+|+++.
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d   44 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLD   44 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            579999999999999999999999999999874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=81.78  E-value=2.2  Score=41.42  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=28.9

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++++++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   52 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVC   52 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            6789999998 5899999999999999999884

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=81.75  E-value=2.4  Score=41.05  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ..++|+++.|.|. |.+|+++|+.|++.|++|+.+.
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~   42 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVD   42 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEe
Confidence            3578999999995 6799999999999999998753

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=81.72  E-value=1.2  Score=44.30  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.|. |.+|+++|+.|++.|++|+.+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~   57 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVN   57 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            478999999984 789999999999999999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=81.69  E-value=2.7  Score=43.02  Aligned_cols=31  Identities=32%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~  216 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVG  216 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEE
Confidence            58999999999999999999999999 67773

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=81.67  E-value=2.6  Score=42.47  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEE
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAI  309 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaV  309 (535)
                      +..++.   .|.+|+|.|.|.||..+++++...|+ +|+++
T Consensus       165 ~~~~~~---~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  202 (356)
T 1pl8_A          165 RRGGVT---LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVT  202 (356)
T ss_dssp             HHHTCC---TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HhcCCC---CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            345554   58999999999999999999999999 88884

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=81.67  E-value=1.5  Score=39.91  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=27.1

Q ss_pred             cEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         281 KTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       281 ~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++|.|.| .|.+|+++++.|.+.|++|++++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~   31 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV   31 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence            4799999 59999999999999999999865

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=81.65  E-value=1.9  Score=43.57  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|+|.|.||..+++++...|++|+++.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~  211 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVIS  211 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            58999999999999999999999999998854

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=81.65  E-value=2  Score=40.61  Aligned_cols=44  Identities=14%  Similarity=0.124  Sum_probs=34.5

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      .++++.|.|. |-+|+++|+.|.+.|++|+.+             +.+.+.+.+..++
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~-------------~r~~~~~~~~~~~   46 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMM-------------GRRYQRLQQQELL   46 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-------------ECCHHHHHHHHHH
Confidence            5789999995 789999999999999999884             3566666665544

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.60  E-value=1.3  Score=42.55  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.|. |.+|+++|+.|++.|++|+.+.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~   38 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR   38 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            368999999994 7899999999999999988743

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=81.53  E-value=1.8  Score=41.43  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|+++.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   35 (260)
T 2qq5_A            2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYIT   35 (260)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            36789999998 5889999999999999999874

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=81.50  E-value=1.2  Score=43.98  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|.|.|.||..+++++...|++|++++
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~  173 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS  173 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            58999999999999999999999999999965

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=81.48  E-value=1.4  Score=42.44  Aligned_cols=29  Identities=14%  Similarity=0.071  Sum_probs=26.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~   29 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGW   29 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEE
Confidence            37999999999999999999999988764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=81.46  E-value=1.8  Score=41.31  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+++.|.| .|.+|+++|+.|++.|++|+.+
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~   44 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVS   44 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=81.40  E-value=1.8  Score=42.57  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++|+++.|.|.+   .+|+++|+.|++.|++|+.+.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~   63 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTY   63 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEe
Confidence            4789999999985   899999999999999987643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=81.36  E-value=2.3  Score=42.73  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa  308 (535)
                      .|.+|+|+|.|.||..+++++...|+ +|++
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~  196 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFA  196 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            58999999999999999999999999 7888

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=81.32  E-value=13  Score=37.33  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ..++|.|.|.|..|..+++.+.+.|.+|+++..
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~   42 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDR   42 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence            457999999999999999999999999988753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=81.26  E-value=1.3  Score=43.09  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |.+|+++|+.|++.|++|+.+.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~   63 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAA   63 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            478999999994 8899999999999999988754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.23  E-value=1.6  Score=40.04  Aligned_cols=30  Identities=30%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++|.|.|. |.+|+++++.|.+.|++|++++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~   31 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVV   31 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            46899996 9999999999999999999965

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=81.09  E-value=1.9  Score=41.49  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.| .|.+|+++|+.|.+.|++|++++
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~   63 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCA   63 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence            6789999998 58999999999999999998843

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=81.08  E-value=1.5  Score=45.64  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ..+|+|-|||-||+.+.+.|.+....||+|.|.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaIndl   53 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAINDL   53 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            479999999999999999999999999999875

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=81.08  E-value=1.8  Score=42.89  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+|++++|.|.   |.+|+++|+.|++.|++|+.+.
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~   42 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGT   42 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEE
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEe
Confidence            378999999996   8999999999999999988753

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=81.04  E-value=2.3  Score=41.27  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~   49 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIAS   49 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            47899999998 58999999999999999988843

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=80.95  E-value=1.1  Score=45.70  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             cEEEEEccccHHHHHHHHHHH-CCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~  312 (535)
                      .+|+|.|||.+|+.+++.|.+ .+..|++|.|.
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~   34 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT   34 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEES
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            489999999999999999987 57899999875

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.94  E-value=1.9  Score=41.13  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++|+++.|.|. |.+|+++|+.|.+.|++|+.+.
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~   50 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICA   50 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence            4689999999985 8999999999999999988743

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=80.93  E-value=1.9  Score=41.18  Aligned_cols=33  Identities=15%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~   37 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLI   37 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence            367899999995 889999999999999999884

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=80.91  E-value=1.6  Score=42.38  Aligned_cols=31  Identities=13%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ++|.|.|. |-+|+++++.|.++|++|++++-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R   32 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSR   32 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            47999997 99999999999999999999863

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=80.82  E-value=1.9  Score=41.80  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++++++.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~   59 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTA   59 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            478999999985 7899999999999999998843

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=80.74  E-value=1.6  Score=44.24  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPD  319 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp  319 (535)
                      .||||+|+|.|..|..+|+.|.+.+  ++|+-|....-..|.|
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p   43 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY   43 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc
Confidence            4899999999999999999998755  5777664444444433

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=80.71  E-value=6.6  Score=38.34  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.5

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~   36 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIAD   36 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEe
Confidence            467999998 59999999999999999998854

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=80.71  E-value=2.2  Score=39.83  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++++++.|.| .|.+|+++++.|.+.|++|+.+.
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~   38 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITG   38 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence            46889999998 58999999999999999998843

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=80.71  E-value=2  Score=39.77  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHC--CCeEEEEe
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRG--RAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~--GakVVaVs  310 (535)
                      +++++|.|.| .|.+|+++++.|.+.  |++|++++
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~   37 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence            4678999999 699999999999999  89999854

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=80.65  E-value=2.6  Score=40.62  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|+++.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~   44 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVD   44 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence            578999999985 7899999999999999988753

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.65  E-value=2.3  Score=40.97  Aligned_cols=46  Identities=24%  Similarity=0.236  Sum_probs=36.5

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +++++++.|.| .|.+|+++|+.|.+.|++|+.+.             .+.+.+.+..++
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~-------------r~~~~~~~~~~~   49 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVD-------------REERLLAEAVAA   49 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-------------SCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------------CCHHHHHHHHHH
Confidence            36889999998 48899999999999999998843             555666655544

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=80.64  E-value=2  Score=40.79  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=27.6

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCe-EEEE
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAK-CLAI  309 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~Gak-VVaV  309 (535)
                      ++|++|+|.| .|-+|+++|+.|++.|++ |+.+
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~   36 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVIL   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEE
Confidence            6789999998 588999999999999997 5543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=80.49  E-value=2.9  Score=41.03  Aligned_cols=35  Identities=26%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CCCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         276 PCMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       276 ~~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++|+++.|.|. |.+|+++|+.|++.|++|+.+.
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~   59 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAID   59 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            3578999999995 7899999999999999998754

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=80.46  E-value=1.3  Score=43.69  Aligned_cols=32  Identities=22%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~   36 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATV   36 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence            678999999 79999999999999999998865

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=80.44  E-value=13  Score=38.26  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEec
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD  311 (535)
                      .+|+|=|||-+|+.+.|.+.+. ...||||-|
T Consensus         5 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaind   36 (338)
T 3lvf_P            5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND   36 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEEC
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCceEEEEec
Confidence            5899999999999999998876 578999987

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=80.42  E-value=1.7  Score=41.58  Aligned_cols=33  Identities=18%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++.|.|.   |.+|+++|+.|.+.|++|+.+.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~   42 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTY   42 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEc
Confidence            67899999996   6999999999999999988753

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=80.34  E-value=1.7  Score=42.16  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcc---ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         278 MENKTYIVQGF---GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       278 l~g~~VaIQGf---GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++|+++.|.|.   |.+|+++|+.|++.|++|+.+.
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~   54 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTY   54 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEe
Confidence            68999999997   6999999999999999988754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=80.25  E-value=2  Score=40.86  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ++++++|.|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus        11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~   45 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCA   45 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            46889999998 58999999999999999998843

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=80.23  E-value=2.7  Score=40.06  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .+++++|.|.| .|.+|+++|+.|.+.|++|+.+
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~   46 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIA   46 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence            47899999998 5899999999999999999884

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=80.20  E-value=2.7  Score=40.42  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +++|++|.|.|. |-+|+++|+.|++.|++|+.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~   41 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFD   41 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence            478999999995 7899999999999999988753

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=80.19  E-value=2.8  Score=41.75  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=55.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCCCCcc---cCC-CCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYPGTKS---APT-DIMFD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~~a~~---i~~-ell~~  355 (535)
                      ++|+|.|.|++|..+|..|. .|..|+.+.             -+.+.+..+.+ .|- +.. ++...   ++. +-...
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~-------------r~~~~~~~l~~-~G~~~~~-~~~~~~~~~~~~~~~~~   66 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVT-------------RRQEQAAAIQS-EGIRLYK-GGEEFRADCSADTSINS   66 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEEC-------------SCHHHHHHHHH-HCEEEEE-TTEEEEECCEEESSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEE-------------CCHHHHHHHHh-CCceEec-CCCeecccccccccccC
Confidence            68999999999999999999 999887732             33344444443 332 221 12111   111 11235


Q ss_pred             cceEEeeccccccccccccccc---cceEEEecCCCCCC
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLT  391 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T  391 (535)
                      ++|++|-|.....+. +-++.+   ....|+-..||--.
T Consensus        67 ~~D~vilavK~~~~~-~~l~~l~~~~~~~ivs~~nGi~~  104 (307)
T 3ego_A           67 DFDLLVVTVKQHQLQ-SVFSSLERIGKTNILFLQNGMGH  104 (307)
T ss_dssp             CCSEEEECCCGGGHH-HHHHHTTSSCCCEEEECCSSSHH
T ss_pred             CCCEEEEEeCHHHHH-HHHHHhhcCCCCeEEEecCCccH
Confidence            799999987655432 222222   22238888888743

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=80.18  E-value=2.4  Score=41.41  Aligned_cols=45  Identities=9%  Similarity=0.060  Sum_probs=35.3

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      ++++++.|.|. |.+|+++|+.|++.|++|+.+             +.+.+.+.+..++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~-------------~r~~~~~~~~~~~   71 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGAL-------------GRTRTEVEEVADE   71 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEE-------------ESSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-------------eCCHHHHHHHHHH
Confidence            57899999984 789999999999999999883             3556666655544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=80.09  E-value=2.2  Score=43.22  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|.+|+|.|.|.||..+++++...|++|+++.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~  220 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTS  220 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            58999999999999999999999999999843

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=80.08  E-value=1.2  Score=40.63  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .|++|.|.| .|.+|..+++.+...|++|+++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~   69 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTT   69 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEE
Confidence            589999999 6999999999999999999884

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=80.08  E-value=1.8  Score=42.83  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+++++|.|.|. |.+|+++++.|.+.|++|+++.
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~   58 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVD   58 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEe
Confidence            357899999996 9999999999999999999865

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=80.05  E-value=4  Score=40.52  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .|.+|+|+|.|.||..+++++...|++++.++|
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~  192 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID  192 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEe
Confidence            689999999999999999999999997655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	7e-76
d1hwxa2	208	c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B	4e-64
d1b26a2	175	c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo	2e-45
d1v9la2	176	c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba	2e-45
d1gtma2	178	c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae	3e-45
d1bgva2	194	c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr	9e-42
d1bgva1	255	c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost	2e-40
d1gtma1	239	c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa	1e-38
d1b26a1	234	c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm	1e-36
d1v9la1	242	c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob	7e-34
d1leha1	230	c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu	1e-30
d1leha2	134	c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus	2e-29
d1c1da2	148	c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rh	4e-27
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	9e-22

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  239 bits (611), Expect = 7e-76
 Identities = 140/291 (48%), Positives = 192/291 (65%), Gaps = 5/291 (1%)

Query: 246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAK 305
           GR SATGRGVF   E  + N  YM  +G+ P   +KT+ VQGFGNVG H+ RY  R  AK
Sbjct: 2   GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61

Query: 306 CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAI 365
           C+A+ E D +I    G  I+ K+L  +K+  GTI G+P  K     I+    DIL+PAA 
Sbjct: 62  CVAVGESDGSIWNPDG--IDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAAS 119

Query: 366 EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLK 425
           EK + KSNA +V+AKII E ANGP TP A  + L++N+++IPD++ NAGGVTVSYF+ LK
Sbjct: 120 EKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILK 179

Query: 426 NISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKK---IRIQKSAMYEDRISNATEKD 482
           N++H S GR++F Y+++ +  LL S+  SL   F K    I I  +A ++DRIS A+EKD
Sbjct: 180 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD 239

Query: 483 IVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
           IV S L ++M+R+ R I+  A K +  LDLR AAY +A+ K+F+ Y EAG+
Sbjct: 240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  205 bits (524), Expect = 4e-64
 Identities = 97/207 (46%), Positives = 140/207 (67%), Gaps = 1/207 (0%)

Query: 38  DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEI 97
            +++P FF+ VE +F R    +  +    ++ R+ T E    R  GI+ +++  + +L +
Sbjct: 3   REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQ-TQEQKRNRVRGILRIIKPCNHVLSL 61

Query: 98  QFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVP 157
            FP RRD G +E+I+ YR  H   ++P KGGIRY+ DV+ DEVKALA+LMTYK +  +VP
Sbjct: 62  SFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVP 121

Query: 158 FGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYD 217
           FGGAK G++I+P  Y + +LE+ITR+F +EL KK ++GPG+DVPAP+ +T  REMSW  D
Sbjct: 122 FGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIAD 181

Query: 218 AYAKTLGSTNINALGMVTGKPLFLGGI 244
            YA T+G  +INA   VTGKP+  GGI
Sbjct: 182 TYASTIGHYDINAHACVTGKPISQGGI 208

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  155 bits (394), Expect = 2e-45
 Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 26/199 (13%)

Query: 44  FFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFR 102
            +E     F+RA   + +                       +  +++    +L ++FP R
Sbjct: 2   LYEMAVEQFNRAASLMDLES--------------------DLAEVLRRPKRVLIVEFPVR 41

Query: 103 RDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAK 162
            D G  E+   YR  H   + P KGGIRY  DV  DEVKALA  MT+K +  N+PFGG K
Sbjct: 42  MDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGK 101

Query: 163 GGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKT 222
           GG+R+DP K +  ELER++R+F  E+  +  +GP  D+PAPD NT+A  ++W+ D Y+  
Sbjct: 102 GGVRVDPKKLSRNELERLSRRFFSEI--QVIIGPYNDIPAPDVNTNADVIAWYMDTYSMN 159

Query: 223 LGSTNINALGMVTGKPLFL 241
           +G T    LG+VTGKP+ L
Sbjct: 160 VGHT---VLGIVTGKPVEL 175

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  155 bits (393), Expect = 2e-45
 Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 26/198 (13%)

Query: 43  GFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPF 101
           GF E V  Y  + V+    PE                        ++     +L +  P 
Sbjct: 2   GFLEYVLNYVKKGVELGGFPE--------------------DFYKILSRPRRVLIVNIPV 41

Query: 102 RRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGA 161
           R D G +E+ + YR  HC    P KGG+R+  +V   +  ALA LMT KNS + +P+GGA
Sbjct: 42  RLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGA 101

Query: 162 KGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAK 221
           KG +R+DP K + RELE ++R +A  +     +G  +D+PAPD  T+A+ M+W  D Y+K
Sbjct: 102 KGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPAPDVGTNAQIMAWMVDEYSK 159

Query: 222 TLGSTNINALGMVTGKPL 239
                  N  G+ T KP 
Sbjct: 160 I---KGYNVPGVFTSKPP 174

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  155 bits (393), Expect = 3e-45
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 26/202 (12%)

Query: 41  NPGFFESVEYYFHRAVQNL-IPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQF 99
           +P  +E V     RA Q + I E                      +  ++    ++E+  
Sbjct: 2   DP--YEIVIKQLERAAQYMEISE--------------------EALEFLKRPQRIVEVTI 39

Query: 100 PFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFG 159
           P   D G  ++   +R  H   + PTKGGIR+  +     VKALAA MT+K +  ++P+G
Sbjct: 40  PVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYG 99

Query: 160 GAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAY 219
           G KGGI +DP K ++RE ER+ R +   +   + + P  D+PAPD  T+ + M+W  D Y
Sbjct: 100 GGKGGIIVDPKKLSDREKERLARGYIRAIY--DVISPYEDIPAPDVYTNPQIMAWMMDEY 157

Query: 220 AKTLGSTNINALGMVTGKPLFL 241
            +T+      A G++TGKPL +
Sbjct: 158 -ETISRRKTPAFGIITGKPLSI 178

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  146 bits (369), Expect = 9e-42
 Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 16/198 (8%)

Query: 39  KENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQ 98
           K+        E  F + V+      +V        D         ++  M     ++E +
Sbjct: 13  KKYAD-----EPEFVQTVE------EVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFR 61

Query: 99  FPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPF 158
            P+  D+G+  +   YR        P KGG+R+A  VN   +K L     +K+S + +P 
Sbjct: 62  VPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPM 121

Query: 159 GGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDA 218
           GGAKGG   DP+  ++RE+ R  + F  EL +  ++GP IDVPA D    ARE+ + Y  
Sbjct: 122 GGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIGYMYGQ 179

Query: 219 YAKTLGSTNINALGMVTG 236
           Y K +G       G++TG
Sbjct: 180 YRKIVGGF---YNGVLTG 194

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

 Score =  144 bits (365), Expect = 2e-40
 Identities = 68/308 (22%), Positives = 93/308 (30%), Gaps = 66/308 (21%)

Query: 237 KPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAA 296
           K    GG   R  ATG G     E        M        +  KT  + GFGNV + AA
Sbjct: 1   KARSFGGSLVRPEATGYGSVYYVE------AVMKHENDT--LVGKTVALAGFGNVAWGAA 52

Query: 297 RYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKGTIKGYPGTKSAPT--- 350
           +      AK + +   D  I   +G     K    L      +  ++ Y           
Sbjct: 53  KKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG 112

Query: 351 -DIMFDKVDILVPAAIEKVIRKSNADKVQA---KIIVEAANGPLTPAAHAMLLK-KNVLI 405
                 KVDI++P A +  +    A K+ A   K  +E AN P T  A   L++  N+++
Sbjct: 113 EKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVV 172

Query: 406 IPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRI 465
            P    NAGGV VS FE  +N    S                                  
Sbjct: 173 APSKAVNAGGVLVSGFEMSQNSERLSWTAE------------------------------ 202

Query: 466 QKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIF 525
                             V S L   M          AE+     +L   A      KI 
Sbjct: 203 -----------------EVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIA 245

Query: 526 KTYEEAGL 533
                 G+
Sbjct: 246 DAMMAQGI 253

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  139 bits (350), Expect = 1e-38
 Identities = 85/294 (28%), Positives = 136/294 (46%), Gaps = 60/294 (20%)

Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF-R 300
           GG  GR  AT RG            E    +G +  ++ KT  +QG+GN G++ A+    
Sbjct: 1   GGSLGRIEATARGASYTIR------EAAKVLGWDT-LKGKTIAIQGYGNAGYYLAKIMSE 53

Query: 301 RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD-KVDI 359
               K +A+ +    I    G  +N  ++  +K   G++K +PG  +   + + + +VD+
Sbjct: 54  DFGMKVVAVSDSKGGIYNPDG--LNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDV 111

Query: 360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
           L PAAIE+VI K NAD ++AKI+ E ANGP+TP A  +L +K +L IPD   NAGGVTVS
Sbjct: 112 LAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVS 171

Query: 420 YFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT 479
           YFEW++NI+                                                   
Sbjct: 172 YFEWVQNITGYY-----------------------------------------------W 184

Query: 480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL 533
             + V+  L   M +A  D+   A++    + +R+AAY  A+ ++++   + G 
Sbjct: 185 TIEEVRERLDKKMTKAFYDVYNIAKE--KNIHMRDAAYVVAVQRVYQAMLDRGW 236

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  133 bits (336), Expect = 1e-36
 Identities = 93/293 (31%), Positives = 142/293 (48%), Gaps = 61/293 (20%)

Query: 242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYF-R 300
           GG +GRE ATGRGV   A         M  +G++P  +  T  VQGFGNVG  AA    +
Sbjct: 1   GGSKGREEATGRGVKVCAG------LAMDVLGIDP--KKATVAVQGFGNVGQFAALLISQ 52

Query: 301 RGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD-KVDI 359
              +K +A+ +    I   +G   + ++L  YK   GT+  YP  +    + + +  VDI
Sbjct: 53  ELGSKVVAVSDSRGGIYNPEG--FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDI 110

Query: 360 LVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVTVS 419
           LVPAA+E  I   NA++++AK +VE ANGP TP A  +L ++ +L++PDI ANAGGVTVS
Sbjct: 111 LVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVS 170

Query: 420 YFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT 479
           YFEW++++                                                    
Sbjct: 171 YFEWVQDLQSFFWDL--------------------------------------------- 185

Query: 480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG 532
             D V+++L   M+ A  D+++  EK    +D+R AAY  A+ ++    ++ G
Sbjct: 186 --DQVRNALEKMMKGAFNDVMKVKEK--YNVDMRTAAYILAIDRVAYATKKRG 234

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

 Score =  126 bits (317), Expect = 7e-34
 Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 61/295 (20%)

Query: 243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRG 302
           G   RE ATG GV  A        E   ++     +E KT  +QG GNVG   A +  + 
Sbjct: 2   GNPVREYATGFGVAVATR------EMAKKLWGG--IEGKTVAIQGMGNVGRWTAYWLEKM 53

Query: 303 RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-----PTDIMFDKV 357
            AK +A+ + +      +G  +     +        ++ +    +A     P  I    V
Sbjct: 54  GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDV 113

Query: 358 DILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGVT 417
           DI VPAAIE VIR  NA  V+A+++VE ANGP TP A  +L ++ V+++PDI ANAGGV 
Sbjct: 114 DIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVI 173

Query: 418 VSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISN 477
           +SY EW++N+                                                  
Sbjct: 174 MSYLEWVENLQWYIWDE------------------------------------------- 190

Query: 478 ATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG 532
               +  +  L + M      + +  ++ +    +R+AA  +AL +I+   +  G
Sbjct: 191 ----EETRKRLENIMVNNVERVYKRWQR-EKGWTMRDAAIVTALERIYNAMKIRG 240

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  117 bits (293), Expect = 1e-30
 Identities = 49/252 (19%), Positives = 75/252 (29%), Gaps = 45/252 (17%)

Query: 236 GKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHA 295
           G     G        T  GV+   +          E      +E     VQG GNV    
Sbjct: 1   GISPAFGSSGNPSPVTAYGVYRGMK------AAAKEAFGSDSLEGLAVSVQGLGNVAKAL 54

Query: 296 ARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFD 355
            +      AK +    +  A+                      +        AP  I   
Sbjct: 55  CKKLNTEGAKLVVTDVNKAAV-------------------SAAVAEEGADAVAPNAIYGV 95

Query: 356 KVDILVPAAIEKVIRKSNADKVQAKIIVE-AANGPLTPAAHAMLLKKNVLIIPDIFANAG 414
             DI  P A+  V+      +++AK+I   A N    P     L +  ++  PD   NAG
Sbjct: 96  TCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAG 155

Query: 415 GVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKS------ 468
           GV     E              +GY++  +   +  I  S+   F    R          
Sbjct: 156 GVINVADEL-------------YGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVAAD 202

Query: 469 AMYEDRISNATE 480
            M E+RI+   +
Sbjct: 203 RMAEERIAKVAK 214

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score =  110 bits (277), Expect = 2e-29
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 96  EIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYA----LDVNPDEVKALAALMTYKN 151
           ++ F     SG    ++     H T   P  GG R       +   ++   LA  MTYKN
Sbjct: 14  QLVFCQDEASG----LKAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKN 69

Query: 152 SCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSARE 211
           + + +  GG K  I  DP    N ++ R   +F   L        G  + A D  T+  +
Sbjct: 70  AAAGLNLGGGKTVIIGDPFADKNEDMFRALGRFIQGL-------NGRYITAEDVGTTVDD 122

Query: 212 MSWFYDAY 219
           M   +   
Sbjct: 123 MDLIHQET 130

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score =  104 bits (261), Expect = 4e-27
 Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 118 HCTHKSPTKGGIRYALDVNPDE----VKALAALMTYKNSCSNVPFGGAKGGIRIDPSKY- 172
             T   P  GG R A   N  +       LA  MT K + SN+P GG K  I +   ++ 
Sbjct: 30  DSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHS 89

Query: 173 -NNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINAL 231
            +     RI R  A  + K +    G     PD NT++ +M    D              
Sbjct: 90  IDPSTWARILRIHAENIDKLS----GNYWTGPDVNTNSADMDTLNDTT------------ 133

Query: 232 GMVTGKPLFLGG 243
             V G+ L  GG
Sbjct: 134 EFVFGRSLERGG 145

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 91.0 bits (225), Expect = 9e-22
 Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 46/237 (19%)

Query: 250 ATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAI 309
            T  GVF A +        +   GL   ++  T +VQG G VG   A       A+ L  
Sbjct: 4   TTAVGVFEAMK------ATVAHRGLGS-LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 56

Query: 310 VEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDKVDILVPAAIEKVI 369
                 +                            T  A  D++    D+  P A+  VI
Sbjct: 57  DTDTERV--------------------AHAVALGHTAVALEDVLSTPCDVFAPCAMGGVI 96

Query: 370 RKSNADKVQAKIIVEAANGPLT-PAAHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNIS 428
               A  +   ++  AAN  +   AA  +L  + +L  PD  ANAGG        +    
Sbjct: 97  TTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV---- 152

Query: 429 HSSLGRMSFGYDKEISDLLLSSIDTSLSDTF----NKKIRIQKSAMY--EDRISNAT 479
                    G+ + +      +I  +L+  F    N  +   ++A      R   A+
Sbjct: 153 --------LGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREAS 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1hwxa2	208	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	100.0
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1b26a2	175	Glutamate dehydrogenase {Thermotoga maritima [TaxI	100.0
d1gtma2	178	Glutamate dehydrogenase {Archaeon Pyrococcus furio	100.0
d1v9la2	176	Glutamate dehydrogenase {Pyrobaculum islandicum [T	100.0
d1bgva2	194	Glutamate dehydrogenase {Clostridium symbiosum [Ta	100.0
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1c1da2	148	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	100.0
d1leha2	134	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.86
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	97.8
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.42
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.06
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.82
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.74
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.64
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.63
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.47
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.37
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.25
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.18
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.16
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.14
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.13
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.12
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.03
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.01
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.98
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.94
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.8
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.74
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.71
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.71
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.62
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.61
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.51
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.48
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.47
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.46
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.4
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.22
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.08
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.91
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.82
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.74
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.23
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.16
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.16
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.92
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.83
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.8
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.45
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.4
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.32
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.28
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.24
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	93.19
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.01
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.58
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.54
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.51
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.48
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.36
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	92.25
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.2
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.99
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.91
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.88
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.78
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.77
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.59
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.56
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.53
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.47
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.41
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.39
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.35
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.19
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.11
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.07
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.04
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.93
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.87
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	90.8
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	90.52
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.52
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.47
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.43
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.37
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.27
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	90.17
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.15
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.12
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.09
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.06
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.91
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.81
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	89.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.72
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.65
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.51
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.47
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	89.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.34
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.17
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.07
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.89
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.87
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.87
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	88.8
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.7
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	88.69
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.58
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.55
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.5
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.5
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	88.47
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	88.42
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.39
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.32
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.16
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	88.16
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	88.12
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.07
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.02
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	88.0
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.98
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.76
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.61
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.58
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.58
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.28
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	87.26
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.15
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	87.11
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	86.87
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	86.87
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.69
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	86.61
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.47
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.34
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	86.23
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	86.2
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	86.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	85.65
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	85.64
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	85.42
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.3
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.23
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	84.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.6
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.41
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	84.32
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	84.29
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	84.24
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.15
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	84.12
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.81
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.53
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.35
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.32
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.29
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.27
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.25
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.23
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	83.17
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.11
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.1
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	83.07
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.69
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.66
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	82.54
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.23
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	82.19
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.18
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	82.11
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	82.07
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	82.02
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.96
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	81.92
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.86
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.69
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	81.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	81.56
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	81.51
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	81.25
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.73
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.66
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	80.63
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.52
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.36
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	80.2
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	80.12

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-78  Score=614.08  Aligned_cols=287  Identities=49%  Similarity=0.792  Sum_probs=275.6

Q ss_pred             CCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCC
Q psy1913         245 RGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEI  324 (535)
Q Consensus       245 ~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dL  324 (535)
                      +||.+||||||++++++++++...++.+|++++|+|+||+||||||||+++|++|++.|+|||+|||++|+||||+|  |
T Consensus         1 hGR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~G--l   78 (293)
T d1hwxa1           1 HGRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDG--I   78 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTC--C
T ss_pred             CCCchHhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccc--c
Confidence            58999999999999999999988888899988999999999999999999999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913         325 NYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNV  403 (535)
Q Consensus       325 Di~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI  403 (535)
                      |+++|.+++.+++++.+|++.. +++ ++|+.+||||+|||++++||.+||++|+||+|+||||+|+||+|+++|++|||
T Consensus        79 d~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DIliPaA~~~~I~~~~a~~l~ak~I~EgAN~P~t~eA~~~L~~~gI  157 (293)
T d1hwxa1          79 DPKELEDFKLQHGTILGFPKAK-IYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNI  157 (293)
T ss_dssp             CHHHHHHHHHTTSSSTTCTTSC-BCCSCGGGCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHcCCeecccccc-cCCcccccCCccEEeeccccccccHHHHHHHhhCEEeccCCCCCCcchHHHHHHCCC
Confidence            9999999999999999998754 556 89999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhh---hhhhcchhhHHHhhcccch
Q psy1913         404 LIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNK---KIRIQKSAMYEDRISNATE  480 (535)
Q Consensus       404 ~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~i~g~~e  480 (535)
                      +|+||+++|||||+||||||+||++|++|++++++|++++.+++|..+...+.+.||.   -....|+....++++|++|
T Consensus       158 ~viPD~laNAGGV~vSy~Ew~qn~~~~~w~~~~~~~e~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~ga~E  237 (293)
T d1hwxa1         158 MVIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASE  237 (293)
T ss_dssp             EEECHHHHTTHHHHHHHHHHHHHHHTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCCCCCCHHHHHHTTCCCH
T ss_pred             EEeChhhhcCchHHhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHhcCCCh
Confidence            9999999999999999999999999999999999999999999999999999998887   3556789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         481 KDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       481 ~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                      +|+|+++|+++|.++|++|++++++++..+|||+|||++||+||+++|+.||+.
T Consensus       238 ~d~V~~~L~~~M~~a~~~v~~~~~~~~~~~~lR~AAy~~ai~ri~~a~~~rGi~  291 (293)
T d1hwxa1         238 KDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVT  291 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999999998779999999999999999999999974

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=4.7e-69  Score=536.04  Aligned_cols=241  Identities=28%  Similarity=0.330  Sum_probs=219.3

Q ss_pred             ccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceE
Q psy1913         237 KPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAI  316 (535)
Q Consensus       237 KP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~i  316 (535)
                      ||+++|||.||.+||||||+++++++++      .+|.  +|+|+||+||||||||+++|++|++.|+|||+|||++|+|
T Consensus         1 Kp~~~GGs~gR~eATG~Gv~~~~~~~~~------~~~~--~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i   72 (255)
T d1bgva1           1 KARSFGGSLVRPEATGYGSVYYVEAVMK------HEND--TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYI   72 (255)
T ss_dssp             CCGGGTCCTTTTTHHHHHHHHHHHHHHH------HTTC--CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred             CCccccCCCCCCccchHHHHHHHHHHHH------hCCC--CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceE
Confidence            8999999999999999999999996554      5664  5899999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCHHHHHHHHHHc-----CCcccC---CCCcccCC-CCccccceEEeecccccccccccccccc---ceEEEe
Q psy1913         317 VPDKGTEINYKDLHTYKITK-----GTIKGY---PGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQ---AKIIVE  384 (535)
Q Consensus       317 ynp~G~dLDi~~L~~~~~~~-----g~v~~~---~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~---AkiIvE  384 (535)
                      |||+|  ||+++|+++..+.     +++..|   .+.+.+++ ++|..+||||+|||++++||.+||++|+   ||+|+|
T Consensus        73 ~~~~G--ld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~E  150 (255)
T d1bgva1          73 YDPEG--ITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIE  150 (255)
T ss_dssp             ECTTC--SCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEEC
T ss_pred             ecCCC--CCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcccccccEEeeccccccccHHHHHhhhhcCceEEec
Confidence            99999  9999999986542     344443   24566777 8999999999999999999999999997   699999


Q ss_pred             cCCCCCCHHHHHH-HHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhh
Q psy1913         385 AANGPLTPAAHAM-LLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKI  463 (535)
Q Consensus       385 gAN~p~T~eA~~i-L~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~  463 (535)
                      |||+|+||+|+++ |++|||+|+||+++|||||++|||||+||+++++|       +++                     
T Consensus       151 gAN~p~t~ea~~~ll~~~gI~vvPD~laNaGGVivSy~E~~qn~~~~~w-------~~~---------------------  202 (255)
T d1bgva1         151 VANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSW-------TAE---------------------  202 (255)
T ss_dssp             CSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCC-------CHH---------------------
T ss_pred             CCCCCcchHHHHHHHHhcCCEEehHhhhcCCceeeehhhhhhhhhhhhh-------hHH---------------------
Confidence            9999999999886 56799999999999999999999999999998755       664                     


Q ss_pred             hhcchhhHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         464 RIQKSAMYEDRISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       464 ~~~~~~~~~~~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                                         +|+++|+++|.++|++|++++++++...|||+|||++|++||++||+.||+|
T Consensus       203 -------------------ev~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~a~~Rva~A~~~rG~~  254 (255)
T d1bgva1         203 -------------------EVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIA  254 (255)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence                               3899999999999999999999998767999999999999999999999998

>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-68  Score=510.15  Aligned_cols=206  Identities=47%  Similarity=0.877  Sum_probs=197.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEE
Q psy1913          38 DKENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCH  117 (535)
Q Consensus        38 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~  117 (535)
                      ...+|+||++|+.|||+|+.++++.|.++++ ...+.+++...+++++++|++|+|+++|+|||+||||++++|+|||+|
T Consensus         3 ~~~~p~F~~~v~~~f~~a~~~~e~~l~e~~~-~~~~~~~~~~~~~~~~~~l~~p~~~~~v~~pv~~d~G~~~~~~gyR~q   81 (208)
T d1hwxa2           3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLK-TRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQ   81 (208)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHHHTCC-CSSCSSHHHHHHHHHHHHHSSCSEEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhhhhhhHHHHHHhcCCCeEEEEEEEEEECCCCEEEeccEEEE
Confidence            5678999999999999999999877877665 556788999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCC
Q psy1913         118 HCTHKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPG  197 (535)
Q Consensus       118 H~~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~  197 (535)
                      ||+++||+||||||||+++++||++||+||||||||+|||||||||||++||+.+|+.||||++|+|+.+|.++++|||+
T Consensus        82 Hn~~lGP~kGGiR~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~~~igp~  161 (208)
T d1hwxa2          82 HSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPG  161 (208)
T ss_dssp             CCCSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCGGGSCHHHHHHHHHHHHHHHHHTTCCBTT
T ss_pred             ECCchhccCCCceEChhhhHHHHHHHHHHHHHHHHhhcccccCccceeecCCCCCCHHHHHHHHHHHHHHhhccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             CcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCC
Q psy1913         198 IDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGI  244 (535)
Q Consensus       198 ~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs  244 (535)
                      +|||||||||++++|+||+|+|+++.|..+.+.+||+||||+++||+
T Consensus       162 ~dIpApDvgT~~~eM~wi~d~y~~~~g~~~~~~~g~vTGKp~~~GGi  208 (208)
T d1hwxa2         162 VDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGI  208 (208)
T ss_dssp             TEEEECBTTBCHHHHHHHHHHHHTTGGGGCTTGGGGCSSCCGGGTCC
T ss_pred             CCccCccccccHHHHHHHHhhhhhhcCCCCCCCceeEeCCchhhcCC
Confidence            99999999999999999999999999988778899999999999996

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.8e-66  Score=513.04  Aligned_cols=235  Identities=36%  Similarity=0.621  Sum_probs=222.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHH-CCCeEEEEecCCceEeCCC
Q psy1913         242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDK  320 (535)
Q Consensus       242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~  320 (535)
                      |||.||.+||||||+++++++      ++.+|.+ +|+|+||+||||||||+++|++|++ .|++||+|+|++|++|||+
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~------~~~~g~~-~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~   73 (239)
T d1gtma1           1 GGSLGRIEATARGASYTIREA------AKVLGWD-TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPD   73 (239)
T ss_dssp             TCCTTTTTHHHHHHHHHHHHH------HHHTTCS-CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEE
T ss_pred             CCCCCCcchhhHHHHHHHHHH------HHHhCCC-CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCC
Confidence            899999999999999999955      4567754 5999999999999999999999975 6999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHH
Q psy1913         321 GTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLL  399 (535)
Q Consensus       321 G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~  399 (535)
                      |  ||+++|++++.+++++.+|++++.+++ ++|..+||||+|||++++||++||++++||+|+||||+|+||+|+++|+
T Consensus        74 G--~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIl~PcA~~~~I~~~~a~~i~ak~I~e~AN~p~t~ea~~~L~  151 (239)
T d1gtma1          74 G--LNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILF  151 (239)
T ss_dssp             E--ECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSCCSEEEECSCSCCBCTTGGGGCCCSEEECCSSSCBCHHHHHHHH
T ss_pred             c--CCHHHHHHHHHhccccccCCCCeeecccccccccccEEeeccccccccHHHHHhccccEEEecCCCCCCHHHHHHHH
Confidence            9  999999999999999999999999988 9999999999999999999999999999999999999999999999999


Q ss_pred             hCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccc
Q psy1913         400 KKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT  479 (535)
Q Consensus       400 ~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~  479 (535)
                      +|||+|+|||++|||||++|||||+||+++++|       +++                                     
T Consensus       152 ~rgI~~iPD~~aNAGGVi~s~~E~~qn~~~~~w-------~~~-------------------------------------  187 (239)
T d1gtma1         152 EKGILQIPDFLCNAGGVTVSYFEWVQNITGYYW-------TIE-------------------------------------  187 (239)
T ss_dssp             HTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCC-------CHH-------------------------------------
T ss_pred             HCCCEEecchhhCCcceeEeeeeeccccccccc-------cHH-------------------------------------
Confidence            999999999999999999999999999998655       664                                     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       480 e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                         +|.++|+++|.++|++|++.+++++  +++|+|||++|++||++||+.||+.
T Consensus       188 ---~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~A~~Ria~a~~~rG~v  237 (239)
T d1gtma1         188 ---EVRERLDKKMTKAFYDVYNIAKEKN--IHMRDAAYVVAVQRVYQAMLDRGWV  237 (239)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHcCCc
Confidence               3899999999999999999999985  8999999999999999999999974

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.5e-66  Score=506.81  Aligned_cols=232  Identities=39%  Similarity=0.634  Sum_probs=220.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHH-HCCCeEEEEecCCceEeCCC
Q psy1913         242 GGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHDTAIVPDK  320 (535)
Q Consensus       242 GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~G~iynp~  320 (535)
                      |||.||.+||||||++++++++      +.+|.  +++|+||+||||||||+++|++|+ +.|++||+|+|++|++|||+
T Consensus         1 GGs~gR~eATg~Gv~~~~~~~~------~~~~~--~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~   72 (234)
T d1b26a1           1 GGSKGREEATGRGVKVCAGLAM------DVLGI--DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPE   72 (234)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHH------HHTTC--CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTT
T ss_pred             CCCCCccchhhHHHHHHHHHHH------HHcCC--CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEecc
Confidence            8999999999999999999554      45775  589999999999999999999996 57999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHH
Q psy1913         321 GTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLL  399 (535)
Q Consensus       321 G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~  399 (535)
                      |  ||+++|.+++++++++..|++++.+++ ++|+.+||||+|||++++||++||++|+||+|+||||+|+||+|+++|+
T Consensus        73 G--ld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~  150 (234)
T d1b26a1          73 G--FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILS  150 (234)
T ss_dssp             C--CCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSCCSEEEECSCTTCBCHHHHTTCCCSEEECCSSSCBCHHHHHHHH
T ss_pred             c--cchHHHHHHHHhhcceeccccceeeccccccccccceeecchhcccccHHHHHHhhhceEeecCCCCCCHHHHHHHH
Confidence            9  999999999999999999999999988 8999999999999999999999999999999999999999999999999


Q ss_pred             hCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccc
Q psy1913         400 KKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNAT  479 (535)
Q Consensus       400 ~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~  479 (535)
                      +|||+|+||+++||||||+|||||+||+++++|       +++                                     
T Consensus       151 ~rgI~~~PD~~aNaGGVi~s~~E~~qn~~~~~w-------~~e-------------------------------------  186 (234)
T d1b26a1         151 RRGILVVPDILANAGGVTVSYFEWVQDLQSFFW-------DLD-------------------------------------  186 (234)
T ss_dssp             HTTCEEECHHHHTTHHHHHHHHHHHHHHTTCCC-------CHH-------------------------------------
T ss_pred             HCCeEEechHHhcCCCeeeeehhcccccchhcc-------cHH-------------------------------------
Confidence            999999999999999999999999999998655       664                                     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcC
Q psy1913         480 EKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAG  532 (535)
Q Consensus       480 e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G  532 (535)
                         +|+++|+++|.++|++|++.+++++  +|+|+|||++|++||++||+.||
T Consensus       187 ---~V~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~A~~ria~a~~~rG  234 (234)
T d1b26a1         187 ---QVRNALEKMMKGAFNDVMKVKEKYN--VDMRTAAYILAIDRVAYATKKRG  234 (234)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHHHHHhcC
Confidence               3999999999999999999999995  79999999999999999999998

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=7e-65  Score=502.48  Aligned_cols=233  Identities=34%  Similarity=0.500  Sum_probs=213.6

Q ss_pred             CCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCC
Q psy1913         243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGT  322 (535)
Q Consensus       243 Gs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~  322 (535)
                      ||+||.+||||||+++++++++      .++.  +|+|+||+||||||||+++|++|++.|+|||+|+|++|+||||+| 
T Consensus         2 Gs~~r~~ATg~Gv~~~~~~~~~------~~~~--~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~G-   72 (242)
T d1v9la1           2 GNPVREYATGFGVAVATREMAK------KLWG--GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEG-   72 (242)
T ss_dssp             CCGGGGGHHHHHHHHHHHHHHH------HHHS--CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTC-
T ss_pred             CCCCCcchhhHHHHHHHHHHHH------HcCC--CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccccccccccc-
Confidence            8999999999999999996654      4553  589999999999999999999999999999999999999999999 


Q ss_pred             CCCHHHHHHHHHHcCC-----cccCCCCcccCC--CCccccceEEeeccccccccccccccccceEEEecCCCCCCHHHH
Q psy1913         323 EINYKDLHTYKITKGT-----IKGYPGTKSAPT--DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAH  395 (535)
Q Consensus       323 dLDi~~L~~~~~~~g~-----v~~~~~a~~i~~--ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~  395 (535)
                       ||+++|.++++.++.     +..+++++.+++  ++|+.+||||+|||++++||++|+++++||+|+||||+|+||+|+
T Consensus        73 -ld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~~~~I~~~~a~~i~ak~IvegAN~p~t~~a~  151 (242)
T d1v9la1          73 -LNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAE  151 (242)
T ss_dssp             -CCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTTTTCCCSEEECCSSSCBCHHHH
T ss_pred             -ccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhccccccEEeecchhccccHHHHHhcccCEEEecCCCCCChhHH
Confidence             999999988776553     345677777754  799999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhh
Q psy1913         396 AMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRI  475 (535)
Q Consensus       396 ~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i  475 (535)
                      ++|++|||+|+||+++||||||+|||||+||+++++|       +++                                 
T Consensus       152 ~~L~~rgI~~~PD~~aNaGGVi~s~~E~~qn~~~~~w-------~~e---------------------------------  191 (242)
T d1v9la1         152 RILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIW-------DEE---------------------------------  191 (242)
T ss_dssp             HHHHTTTCEEECHHHHSTHHHHHHHHHHHHHHTTCCC-------CHH---------------------------------
T ss_pred             HHHHhCCeEEeCchhhcCcchhhhhhhhccccccccC-------CHH---------------------------------
Confidence            9999999999999999999999999999999998755       664                                 


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCC
Q psy1913         476 SNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGL  533 (535)
Q Consensus       476 ~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~  533 (535)
                             +|.++|+++|.++|++|++.+++.+ ++++|+|||++|++||++||+.||+
T Consensus       192 -------~v~~~l~~im~~~~~~v~~~~~~~~-~~~~r~aA~~~A~~rva~a~~~rG~  241 (242)
T d1v9la1         192 -------ETRKRLENIMVNNVERVYKRWQREK-GWTMRDAAIVTALERIYNAMKIRGW  241 (242)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHTTSS-SCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHhcCC
Confidence                   2899999999999999999998653 5899999999999999999999996

>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=9.6e-64  Score=469.24  Aligned_cols=175  Identities=43%  Similarity=0.771  Sum_probs=169.2

Q ss_pred             CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913          43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK  122 (535)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~  122 (535)
                      |+|+++..+|++|+++++  +                 +++++++|++|+|+++|+|||+||||++++|+|||+|||+++
T Consensus         1 s~~~~~~~~~~~A~~~l~--l-----------------~~~~~~~L~~P~r~i~v~iPv~~DdG~~~~f~gyR~qhn~~~   61 (175)
T d1b26a2           1 SLYEMAVEQFNRAASLMD--L-----------------ESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVAR   61 (175)
T ss_dssp             CHHHHHHHHHHHHHHHTT--C-----------------CHHHHHHHHSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTT
T ss_pred             CHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHHhCCCeEEEEEEEEEECCCcEEEEEeEEEEeeccc
Confidence            689999999999999997  4                 578899999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913         123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA  202 (535)
Q Consensus       123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa  202 (535)
                      ||+||||||||+++++||++||+|||||||+++||||||||||.+||+.+|+.||||++|+|+.+|.+  +|||..||||
T Consensus        62 GP~kGGiR~~~~v~~~ev~aLa~~MT~K~A~~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~l~~--~iG~~~dipA  139 (175)
T d1b26a2          62 GPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQV--IIGPYNDIPA  139 (175)
T ss_dssp             SSEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHGGG--TCBTTTEEEE
T ss_pred             ccccCCeeEcccccHHHHHHHHHHHHHHHHhhCCccccccceeecCCCCCCHHHHHHHHHHHHHHHHh--ccCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999985  9999999999


Q ss_pred             CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcC
Q psy1913         203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL  241 (535)
Q Consensus       203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~  241 (535)
                      |||||++++|+||+|+|+++.|.+   .+|+|||||+++
T Consensus       140 pDvgT~~~~M~wi~dey~~~~g~~---~~g~vTGKp~~l  175 (175)
T d1b26a2         140 PDVNTNADVIAWYMDTYSMNVGHT---VLGIVTGKPVEL  175 (175)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTSC---CCCSCSSCCGGG
T ss_pred             CcCCCCHHHHHHHHHHHHHhcCCc---CceeEecCccCC
Confidence            999999999999999999999985   689999999864

>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.9e-62  Score=461.90  Aligned_cols=177  Identities=34%  Similarity=0.616  Sum_probs=169.0

Q ss_pred             CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913          43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK  122 (535)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~  122 (535)
                      ++|+++..+|++|+++++  +                 +++++++|++|+|+++|+|||+||||++++|+|||+|||+++
T Consensus         2 np~e~~~~~l~~A~~~~~--i-----------------~~~~~e~L~~P~r~i~v~iPv~~DdG~~~~f~gyRvqhn~~~   62 (178)
T d1gtma2           2 DPYEIVIKQLERAAQYME--I-----------------SEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWAR   62 (178)
T ss_dssp             THHHHHHHHHHHHGGGSC--C-----------------CHHHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEECTT
T ss_pred             CHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHHhCCCEEEEEEEEEEECCCCEEEEeeeEEEECCcc
Confidence            679999999999999998  3                 578899999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913         123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA  202 (535)
Q Consensus       123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa  202 (535)
                      ||+||||||||++|++||++||+||||||||++||||||||||.+||+++|++|+||++|+|+++|.+  +|||.+||||
T Consensus        63 GP~kGGiR~~~~v~~~ev~aLa~~MT~K~Al~~lp~GG~Kggi~~dP~~~s~~eler~~r~f~~~l~~--~iG~~~dipA  140 (178)
T d1gtma2          63 GPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDIPA  140 (178)
T ss_dssp             SSEECCEEECTTCCHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEECC
T ss_pred             CCCCCCeEECccCCHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCCCCHHHHHHHHHHHHHHHHh--ccCCCceecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999996  9999999999


Q ss_pred             CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcC
Q psy1913         203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL  241 (535)
Q Consensus       203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~  241 (535)
                      |||||++++|+||+|+|+++.|.. .+..|||||||+++
T Consensus       141 pDvgt~~~~M~wi~dey~~~~~~~-~~~~gvvTGKp~~l  178 (178)
T d1gtma2         141 PDVYTNPQIMAWMMDEYETISRRK-TPAFGIITGKPLSI  178 (178)
T ss_dssp             BCTTCCHHHHHHHHHHHHHHHTTS-SCGGGGCSSCCGGG
T ss_pred             ccCCCCHHHHHHHHHHHHHhcCcc-cCCceEEeCCCcCC
Confidence            999999999999999999998865 34568999999864

>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=100.00  E-value=2.4e-61  Score=454.00  Aligned_cols=175  Identities=38%  Similarity=0.684  Sum_probs=169.5

Q ss_pred             CHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCC
Q psy1913          43 GFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHK  122 (535)
Q Consensus        43 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~  122 (535)
                      +||++++.||++|+++++  +                 +++++++|++|+|+++|+|||+||||++++|+|||+|||+++
T Consensus         2 ~fle~~~~~~~~A~~~~~--~-----------------~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~f~gyRvqHn~~l   62 (176)
T d1v9la2           2 GFLEYVLNYVKKGVELGG--F-----------------PEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVL   62 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTT--C-----------------CHHHHHHHHSCSEEEEEEEEEECSSSCEEEEEEEEEEEECSS
T ss_pred             cHHHHHHHHHHHHHHHcC--C-----------------CHHHHHHHhCCCEEEEEEEEEEeCCCeEEEEeeEEEEEchhh
Confidence            699999999999999998  3                 578899999999999999999999999999999999999999


Q ss_pred             CCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccC
Q psy1913         123 SPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPA  202 (535)
Q Consensus       123 GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipa  202 (535)
                      ||+||||||||+++++||++||+|||||||+++||||||||||.+||+.+|+.|+||++|+|+++|.+  ++||.+||||
T Consensus        63 GPakGGiR~~~~v~~~ev~aLA~~MT~K~Al~~lp~GGgKggI~~dp~~~s~~E~er~~r~f~~~l~~--~iG~~~dipA  140 (176)
T d1v9la2          63 GPYKGGVRFHPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAP--LIGDVVDIPA  140 (176)
T ss_dssp             SSEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCSCCEEEEEECSCGGGSCHHHHHHHHHHHHHHHGG--GCBTTTEEEE
T ss_pred             hcccCceeECCCCCHHHHHHHHHHHHHHHHHhCCCccCccceeecCCCCCCHHHHHHHHHHHHHHHHH--cCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996  9999999999


Q ss_pred             CCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcC
Q psy1913         203 PDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFL  241 (535)
Q Consensus       203 pDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~  241 (535)
                      |||||++++|+||+|+|+++.|..   .+|+|||||+++
T Consensus       141 pDvGt~~~~M~wi~dey~~~~g~~---~~g~vTGKP~~l  176 (176)
T d1v9la2         141 PDVGTNAQIMAWMVDEYSKIKGYN---VPGVFTSKPPEL  176 (176)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHTSC---CGGGSCSCCSSS
T ss_pred             ccCCCCHHHHHHHHHHHHHhcCCC---CCceeeCCCCCC
Confidence            999999999999999999999975   689999999874

>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=100.00  E-value=5.3e-58  Score=436.38  Aligned_cols=178  Identities=31%  Similarity=0.542  Sum_probs=165.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhccchhhhhhhhhcCChHHHhhhhhhHHHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEec
Q psy1913          40 ENPGFFESVEYYFHRAVQNLIPEFDVSIRARKFTDEDIALRRNGIIMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHC  119 (535)
Q Consensus        40 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~  119 (535)
                      .+|.|+++|..+++.+..+++.+           |   ..+..+++++|++|+|+++|+|||+||||++++|+|||+|||
T Consensus        17 ~EpeF~QaV~Ev~~sl~~~i~~~-----------p---~y~~~~i~e~l~~P~r~i~~~~p~~~d~G~~~~~~gyRvqhn   82 (194)
T d1bgva2          17 DEPEFVQTVEEVLSSLGPVVDAH-----------P---EYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFN   82 (194)
T ss_dssp             TCHHHHHHHHHHHHTTHHHHHTC-----------H---HHHHTTHHHHHTSCSEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHHhC-----------H---HHHHHHHHHHHcCCCeEEEEEEEEEecCCcEEEEeeEEEEec
Confidence            35899999999999888887521           1   112357999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCeeeecCCCHHHHHHHHHHhhhhhccccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCc
Q psy1913         120 THKSPTKGGIRYALDVNPDEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGID  199 (535)
Q Consensus       120 ~~~GPakGGiR~~p~vt~dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~d  199 (535)
                      +++||+||||||||++|.+||++||+||||||||++||||||||||.+||+.+|+.||||++|+|+.+|.+  +|||++|
T Consensus        83 ~~lGP~kGGiR~~~~v~~~ev~~La~~MT~K~Al~~lp~GGgKggi~~dP~~~s~~el~r~~r~~~~~l~~--~ig~~~D  160 (194)
T d1bgva2          83 GAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDID  160 (194)
T ss_dssp             CSSSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTSSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGG--GCBTTTE
T ss_pred             CCcCCcCCCeeecCcCCHHHHHHHHHHHHHhhhhcCCCcccccceeccCCCCCCHHHHHHHHHHHHHHhcc--ccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997  8999999


Q ss_pred             ccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEec
Q psy1913         200 VPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTG  236 (535)
Q Consensus       200 ipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTG  236 (535)
                      ||||||||++++|+||+|+|+++.|.+   .+|||||
T Consensus       161 IpApDvgt~~~eM~wi~d~y~~~~g~~---~~gvvTG  194 (194)
T d1bgva2         161 VPAGDLGVGAREIGYMYGQYRKIVGGF---YNGVLTG  194 (194)
T ss_dssp             EEECBTTBCHHHHHHHHHHHHHHHTSC---CGGGSSS
T ss_pred             ccCCcCCCCHHHHHHHHHHHHHhcCCC---CCeeecC
Confidence            999999999999999999999999875   6899997

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=6.6e-56  Score=434.95  Aligned_cols=217  Identities=21%  Similarity=0.260  Sum_probs=194.8

Q ss_pred             cccCcCCCCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCce
Q psy1913         236 GKPLFLGGIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTA  315 (535)
Q Consensus       236 GKP~~~GGs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~  315 (535)
                      |||.++|||.+|+++|||||++++++++++     .+| ..+|+|+||+||||||||+++|++|++.|+|||+       
T Consensus         1 Gkp~~~GGs~~~~~aTg~GV~~~~~~~~~~-----~~g-~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~-------   67 (230)
T d1leha1           1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKE-----AFG-SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVV-------   67 (230)
T ss_dssp             SCCHHHHHHCCHHHHHHHHHHHHHHHHHHH-----HHS-SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------
T ss_pred             CCChhhCCCCCCCcchHHHHHHHHHHHHHH-----hcC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEe-------
Confidence            899999999999999999999999987764     256 4579999999999999999999999999999998       


Q ss_pred             EeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCC-CCHH
Q psy1913         316 IVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGP-LTPA  393 (535)
Q Consensus       316 iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p-~T~e  393 (535)
                            +|+|...+.+++...       +++.+++ ++|+.+||||+|||++++||++|+++|+||+|+|+||+| +|||
T Consensus        68 ------~d~~~~~~~~~~~~~-------g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~~~~l~ak~Ive~ANn~~t~~e  134 (230)
T d1leha1          68 ------TDVNKAAVSAAVAEE-------GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPR  134 (230)
T ss_dssp             ------ECSCHHHHHHHHHHH-------CCEECCGGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHH
T ss_pred             ------ecccHHHHHHHHHhc-------CCcccCCcccccccccEecccccccccChHHhhccCccEEEecccCCCCCch
Confidence                  568888888887765       4566777 899999999999999999999999999999999999777 5699


Q ss_pred             HHHHHHhCCceeeccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHH
Q psy1913         394 AHAMLLKKNVLIIPDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYED  473 (535)
Q Consensus       394 A~~iL~~rGI~viPD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  473 (535)
                      |+++|++|||+|+|||++||||||+||+||.+             |++++                              
T Consensus       135 a~~~L~~rGI~~iPD~laNAGGVi~s~~E~~~-------------~~~~~------------------------------  171 (230)
T d1leha1         135 HGKYLHELGIVYAPDYVINAGGVINVADELYG-------------YNRTR------------------------------  171 (230)
T ss_dssp             HHHHHHHHTCEECCHHHHTTHHHHHHHHGGGC-------------CCHHH------------------------------
T ss_pred             HHHHHHhhCcEEEeehhhcccchhhhhhhhhC-------------CCHHH------------------------------
Confidence            99999999999999999999999999999964             46542                              


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHHHHHcCCC
Q psy1913         474 RISNATEKDIVQSSLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKTYEEAGLE  534 (535)
Q Consensus       474 ~i~g~~e~d~V~~~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a~~~~G~~  534 (535)
                                +.++|+ .|.++|++|++.+++++  +++|+|||++|++||+++|+.||+|
T Consensus       172 ----------~~~~l~-~I~~~~~~vl~~a~~~~--~~~~~aA~~~A~~ri~~a~~~rg~~  219 (230)
T d1leha1         172 ----------AMKRVD-GIYDSIEKIFAISKRDG--VPSYVAADRMAEERIAKVAKARSQF  219 (230)
T ss_dssp             ----------HHHHHT-HHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             ----------HHHHHH-HHHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHHHcCCc
Confidence                      555665 45588999999999995  8999999999999999999999987

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=2.9e-47  Score=366.59  Aligned_cols=196  Identities=23%  Similarity=0.316  Sum_probs=171.7

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD  328 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~  328 (535)
                      -+||+||+++++++++      +.|+ .+|+|+||+||||||||+++|++|++.|++||+             +|+|...
T Consensus         3 ~~Ta~Gv~~~~~~~~~------~~g~-~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv-------------~d~d~~~   62 (201)
T d1c1da1           3 FTTAVGVFEAMKATVA------HRGL-GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLV-------------ADTDTER   62 (201)
T ss_dssp             HHHHHHHHHHHHHHHH------HTTC-CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHH
T ss_pred             CchHHHHHHHHHHHHH------HhCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-------------ecchHHH
Confidence            3699999999996554      5675 369999999999999999999999999999997             6788888


Q ss_pred             HHHHHHHcCCcccCCCCcccCC-CCccccceEEeeccccccccccccccccceEEEecCCCCCCHH-HHHHHHhCCceee
Q psy1913         329 LHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPA-AHAMLLKKNVLII  406 (535)
Q Consensus       329 L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~e-A~~iL~~rGI~vi  406 (535)
                      +......        +.+.++. ++|..+||||+|||++++||.+|+++|+||+|+||||+|+|++ ++++|++|||+|+
T Consensus        63 ~~~~~~~--------g~~~~~~~~~~~~~~DI~iPcA~~~~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~i  134 (201)
T d1c1da1          63 VAHAVAL--------GHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYA  134 (201)
T ss_dssp             HHHHHHT--------TCEECCGGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEEC
T ss_pred             HHHHHhh--------cccccCccccccccceeeecccccccccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEE
Confidence            7665432        4566777 8999999999999999999999999999999999999998765 8899999999999


Q ss_pred             ccccccccCcchhhHhhhhccccccccccccccchhhHHHHHHhhhhhhhhhhhhhhhhcchhhHHHhhcccchHHHHHH
Q psy1913         407 PDIFANAGGVTVSYFEWLKNISHSSLGRMSFGYDKEISDLLLSSIDTSLSDTFNKKIRIQKSAMYEDRISNATEKDIVQS  486 (535)
Q Consensus       407 PD~laNaGGVivSy~Ew~qn~~~~~~grl~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~g~~e~d~V~~  486 (535)
                      ||+++|||||+.+|.||..            .|+++                                        +|.+
T Consensus       135 PD~laNAGGVi~~~~~~~~------------~~~~~----------------------------------------~v~~  162 (201)
T d1c1da1         135 PDFVANAGGAIHLVGREVL------------GWSES----------------------------------------VVHE  162 (201)
T ss_dssp             CHHHHTTHHHHHHHHHHTT------------CCCHH----------------------------------------HHHH
T ss_pred             ehhhhccchHHHHHHHHHc------------CCCHH----------------------------------------HHHH
Confidence            9999999999988888863            46774                                        2677


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHHHH
Q psy1913         487 SLTHSMQRAGRDILEYAEKSDNKLDLRNAAYCSALFKIFKT  527 (535)
Q Consensus       487 ~L~~~m~~a~~~v~~~a~~~~~~~~lR~AAy~~ai~rv~~a  527 (535)
                      +|+. |.+++.++++.+++++  +++|+|||++|++||++|
T Consensus       163 ~l~~-i~~~~~~i~~~a~~~~--~~~~~aA~~~A~~ri~~A  200 (201)
T d1c1da1         163 RAVA-IGDTLNQVFEISDNDG--VTPDEAARTLAGRRAREA  200 (201)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHhh
Confidence            7775 6678999999999996  899999999999999986

>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=100.00  E-value=1.4e-38  Score=291.93  Aligned_cols=130  Identities=29%  Similarity=0.349  Sum_probs=116.7

Q ss_pred             EEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCH----HHHHHHHHHhhhhhccccCCCCcceEEEecCCCC
Q psy1913          96 EIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNP----DEVKALAALMTYKNSCSNVPFGGAKGGIRIDPSK  171 (535)
Q Consensus        96 ~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~----dEv~aLA~~MT~K~Al~~lP~GGaKGgI~~dP~~  171 (535)
                      +|.+..+.++|.    +++.++||+++||++||||||||+|.    +||++||++|||||||++||||||||||++||+.
T Consensus        12 ~v~~~~d~~tGl----~~iiaIH~t~lGPa~GG~R~~~y~s~~~al~dvl~LA~~MT~K~Alaglp~GGgKg~I~~dp~~   87 (148)
T d1c1da2          12 MTVTRFDAMTGA----HFVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPR   87 (148)
T ss_dssp             EEEEEEETTTTE----EEEEEEEECSSSSEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEEEECSSCG
T ss_pred             EEEEEECCCcCC----EEEEEEeCCCCCCCcceEEEecCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCcceEEecCCCc
Confidence            345557999999    66679999999999999999999995    4699999999999999999999999999999964


Q ss_pred             --CCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhhHhCCCccCCCceEecccCcCCCCC
Q psy1913         172 --YNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAKTLGSTNINALGMVTGKPLFLGGIR  245 (535)
Q Consensus       172 --~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~~~G~~~~~~~~~vTGKP~~~GGs~  245 (535)
                        .++.|+++++|+|.+.|..  ++|  .|||||||||++++|+||+++|+            +|||||+++|||.
T Consensus        88 ~~~~~~e~~~l~r~~~~~l~~--l~G--~yi~a~DvGt~~~dm~~i~~~t~------------~vtGk~~~~GGsG  147 (148)
T d1c1da2          88 HSIDPSTWARILRIHAENIDK--LSG--NYWTGPDVNTNSADMDTLNDTTE------------FVFGRSLERGGAG  147 (148)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHH--TTT--SEEEEECTTCCHHHHHHHHHHCS------------CBCCCCGGGTSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHH--hCC--cEeecCCCCCCHHHHHHHHhhCC------------eeEecCcccCCCC
Confidence              5689999999999999986  665  69999999999999999999984            3789999999985

>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Aminoacid dehydrogenases
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=100.00  E-value=4.3e-36  Score=271.13  Aligned_cols=125  Identities=26%  Similarity=0.302  Sum_probs=110.5

Q ss_pred             HHhhcCCCceEEEEEeEEcCCCceEEeeeeEEEecCCCCCCCCCeeeecCCCHH----HHHHHHHHhhhhhccccCCCCc
Q psy1913          85 IMLMQNYSSLLEIQFPFRRDSGEYELIQCYRCHHCTHKSPTKGGIRYALDVNPD----EVKALAALMTYKNSCSNVPFGG  160 (535)
Q Consensus        85 ~~~l~~p~r~~~v~~pv~~d~G~~~~~~gyRv~H~~~~GPakGGiR~~p~vt~d----Ev~aLA~~MT~K~Al~~lP~GG  160 (535)
                      ++.+..... =+|.+..+..+|.    +||+++||+++||++||||||||++.+    |+++||++|||||||++|||||
T Consensus         4 f~~~~~~~~-e~v~~~~d~~tgl----~a~iaihnt~~GPa~GG~R~~~y~s~~~al~dvlrLA~~MT~K~ala~lp~GG   78 (134)
T d1leha2           4 FKYMEKYDY-EQLVFCQDEASGL----KAVIAIHDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGG   78 (134)
T ss_dssp             HHHHHHHTC-CEEEEEEETTTTE----EEEEEEEECSSSSEECCEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCSCEE
T ss_pred             hhhhhhcCC-cEEEEEecCCCCc----EEEEEEeCCCCCCCcccEEEeccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            344444443 2455778888997    999999999999999999999999865    6999999999999999999999


Q ss_pred             ceEEEecCCCCCCHHHHHHHHHHHHHHHhccCccCCCCcccCCCCCCChhhHHHHHHHHhh
Q psy1913         161 AKGGIRIDPSKYNNRELERITRKFALELIKKNYVGPGIDVPAPDYNTSAREMSWFYDAYAK  221 (535)
Q Consensus       161 aKGgI~~dP~~~s~~Eler~~r~f~~~L~~~~~iGp~~dipapDvgT~~~~Mawi~d~y~~  221 (535)
                      |||||.+||+..++.|++|++++|+.+|.       +.|||||||||+++||+||++++++
T Consensus        79 gK~vI~~dp~~~~~~el~r~~~~~v~~L~-------g~yi~a~DvGt~~~dm~~i~~~t~~  132 (134)
T d1leha2          79 GKTVIIGDPFADKNEDMFRALGRFIQGLN-------GRYITAEDVGTTVDDMDLIHQETDY  132 (134)
T ss_dssp             EEEEEESCTTTTCCHHHHHHHHHHHHTTT-------TSEEBCBCTTCCHHHHHHHHTTCSC
T ss_pred             cceeeecCCCCCCHHHHHHHHHHHHHhCC-------CcEEccCCCCCCHHHHHHHHHhCCc
Confidence            99999999999999999999999999875       5799999999999999999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.1e-05  Score=70.27  Aligned_cols=91  Identities=21%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..++  .|.||+|.|.|||.||+.+|+.|...|++|++             +|+|+-..++..-.        +-...+
T Consensus        16 r~t~~--~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v-------------~e~dp~~al~A~~d--------G~~v~~   72 (163)
T d1li4a1          16 RATDV--MIAGKVAVVAGYGDVGKGCAQALRGFGARVII-------------TEIDPINALQAAME--------GYEVTT   72 (163)
T ss_dssp             HHHCC--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT--------TCEECC
T ss_pred             HHhCc--eecCCEEEEeccccccHHHHHHHHhCCCeeEe-------------eecccchhHHhhcC--------ceEeee
Confidence            45665  48999999999999999999999999999999             88998665554432        112111


Q ss_pred             CCCccccceEEeecccc-ccccccccccccceEEE
Q psy1913         350 TDIMFDKVDILVPAAIE-KVIRKSNADKVQAKIIV  383 (535)
Q Consensus       350 ~ell~~~~DILiPaA~~-~~It~~na~~i~AkiIv  383 (535)
                      -+-....+|++|-|+.. ++|+.+..+++|=..|+
T Consensus        73 ~~~a~~~adivvtaTGn~~vI~~eh~~~MKdgaIL  107 (163)
T d1li4a1          73 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIV  107 (163)
T ss_dssp             HHHHTTTCSEEEECSSCSCSBCHHHHTTCCTTEEE
T ss_pred             hhhhhhhccEEEecCCCccchhHHHHHhccCCeEE
Confidence            11122467988888774 78999998888754443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=7.3e-06  Score=74.18  Aligned_cols=49  Identities=12%  Similarity=0.029  Sum_probs=42.1

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCC----CeEEEEecCCceEeCCCCCCCCHHHHH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGR----AKCLAIVEHDTAIVPDKGTEINYKDLH  330 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~G----akVVaVsD~~G~iynp~G~dLDi~~L~  330 (535)
                      -.+|+|.|||+||+.+++.|.+..    .+|++|+|+++.+++++|  +|.+...
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g--~~~~~~~   56 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDF--SPLNVGS   56 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSC--SCCSCTT
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccc--cchHhhh
Confidence            458999999999999999998743    599999999999999999  8765443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.58  E-value=6.8e-05  Score=67.94  Aligned_cols=87  Identities=21%  Similarity=0.292  Sum_probs=64.4

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..++  -|.||+|+|.|||.||+.+|+.|...|++|+.             +++|+-..++..-     .+|   +..+
T Consensus        15 r~t~~--~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V-------------~E~DPi~alqA~m-----dGf---~v~~   71 (163)
T d1v8ba1          15 RATDF--LISGKIVVICGYGDVGKGCASSMKGLGARVYI-------------TEIDPICAIQAVM-----EGF---NVVT   71 (163)
T ss_dssp             HHHCC--CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEE-------------ECSCHHHHHHHHT-----TTC---EECC
T ss_pred             HHhCc--eecCCEEEEecccccchhHHHHHHhCCCEEEE-------------EecCchhhHHHHh-----cCC---ccCc
Confidence            34554  48999999999999999999999999999999             8899855444432     222   2222


Q ss_pred             C-CCccccceEEeeccc-cccccccccccccce
Q psy1913         350 T-DIMFDKVDILVPAAI-EKVIRKSNADKVQAK  380 (535)
Q Consensus       350 ~-ell~~~~DILiPaA~-~~~It~~na~~i~Ak  380 (535)
                      - +.+ ..+||+|-|+. .++|+.+..+++|-.
T Consensus        72 ~~~a~-~~aDi~vTaTGn~~vI~~~h~~~MKdg  103 (163)
T d1v8ba1          72 LDEIV-DKGDFFITCTGNVDVIKLEHLLKMKNN  103 (163)
T ss_dssp             HHHHT-TTCSEEEECCSSSSSBCHHHHTTCCTT
T ss_pred             hhHcc-ccCcEEEEcCCCCccccHHHHHHhhCC
Confidence            1 222 47899999998 478898888887643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=0.00011  Score=64.92  Aligned_cols=106  Identities=11%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|+|++|+.+|+.|.+.|..|++             .|.+.+.+.+..+..        ....+. +-+..+||+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~-------------~d~~~~~~~~~~~~~--------~~~~~~~~e~~~~~d~   59 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVV-------------SDRNPEAIADVIAAG--------AETASTAKAIAEQCDV   59 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHTT--------CEECSSHHHHHHHCSE
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEE-------------EeCCcchhHHHHHhh--------hhhcccHHHHHhCCCe
Confidence            4799999999999999999999999988             667888887776543        222333 223458999


Q ss_pred             Eeeccccc-----cccccc--cccc-cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         360 LVPAAIEK-----VIRKSN--ADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       360 LiPaA~~~-----~It~~n--a~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      ++-|-...     ++..++  ...+ +-++|++-.+..  ++.+..+.|.++|+.|+.
T Consensus        60 ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (161)
T d1vpda2          60 IITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD  117 (161)
T ss_dssp             EEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             EEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceec
Confidence            99886422     222111  1122 236788777654  345677789999998874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.34  E-value=8.4e-05  Score=66.77  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=73.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      +.|.|+|+|++|..+|+.|.+.|+.|++             .|.+.+++.++.++........++...+. .-...++|+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v-------------~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   69 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCA-------------FNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRR   69 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCE
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEE-------------EcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccce
Confidence            5799999999999999999999999988             55777888777664322111112221111 112357788


Q ss_pred             Eeeccccccccccccccc----c-ceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913         360 LVPAAIEKVIRKSNADKV----Q-AKIIVEAANGP--LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       360 LiPaA~~~~It~~na~~i----~-AkiIvEgAN~p--~T~eA~~iL~~rGI~vi  406 (535)
                      ++.|........+-...+    + -++|++-.+..  .+.+..+.+.++|+.|+
T Consensus        70 ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          70 IILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             EEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence            888866443222222222    2 26777777654  45677788999999997

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.06  E-value=0.00059  Score=60.30  Aligned_cols=105  Identities=10%  Similarity=0.119  Sum_probs=71.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|+|+|++|+.+|+.|.+.|+.|.+             .|.+.+.........        ...... .-....||+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~-------------~d~~~~~~~~~~~~~--------~~~~~~~~e~~~~~di   60 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNV-------------FDLVQSAVDGLVAAG--------ASAARSARDAVQGADV   60 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSSHHHHHHHHHTT--------CEECSSHHHHHTSCSE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEE-------------EECchhhhhhhhhhh--------ccccchhhhhccccCe
Confidence            4799999999999999999999999987             556667666555432        221222 112347898


Q ss_pred             Eeecccccc-----cccc--ccccc-cceEEEecCCCC--CCHHHHHHHHhCCceee
Q psy1913         360 LVPAAIEKV-----IRKS--NADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       360 LiPaA~~~~-----It~~--na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~vi  406 (535)
                      ++-|-....     +...  ....+ +-++|++..+..  .+.+..+.|.++|+.|+
T Consensus        61 ii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          61 VISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             EEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            888765332     2111  12222 237888888874  45678889999999887

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.03  E-value=0.00038  Score=59.34  Aligned_cols=105  Identities=10%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      ++|+|.|+|.+|+.+|+.|.+.|..|+.|             |.|.+.+.++.++.+...-+..+.  +.++|    -.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vi-------------d~d~~~~~~~~~~~~~~vi~Gd~~--~~~~l~~~~i~~   65 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLI-------------DIDKDICKKASAEIDALVINGDCT--KIKTLEDAGIED   65 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHHHCSSEEEESCTT--SHHHHHHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCccee-------------cCChhhhhhhhhhhhhhhccCccc--chhhhhhcChhh
Confidence            58999999999999999999999999883             377888877766543111010111  11222    257


Q ss_pred             ceEEeeccccc---cccccccccccceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913         357 VDILVPAAIEK---VIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNV  403 (535)
Q Consensus       357 ~DILiPaA~~~---~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI  403 (535)
                      +|.++-+....   .+....+.++..+-|+--+|.+   +-.++|.+-|+
T Consensus        66 a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~---~~~~~l~~~G~  112 (132)
T d1lssa_          66 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEI---EYKDVFERLGV  112 (132)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSST---THHHHHHHTTC
T ss_pred             hhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCH---HHHHHHHHCCC
Confidence            89888877643   3333344444433333345544   44567899898

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=0.00026  Score=60.05  Aligned_cols=104  Identities=18%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      |+++|.|+|.+|+.+|+.|.+.|..|+.             -|.|.+.+.++.+. +.-.-+..++  ++++|    -.+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvv-------------id~d~~~~~~~~~~-~~~~~~gd~~--~~~~l~~a~i~~   64 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLA-------------VDINEEKVNAYASY-ATHAVIANAT--EENELLSLGIRN   64 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEE-------------EESCHHHHHHTTTT-CSEEEECCTT--CTTHHHHHTGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEE-------------ecCcHHHHHHHHHh-CCcceeeecc--cchhhhccCCcc
Confidence            5799999999999999999999999998             44788888776543 2111111111  11333    247


Q ss_pred             ceEEeecccccccccc----cccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         357 VDILVPAAIEKVIRKS----NADKVQ-AKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       357 ~DILiPaA~~~~It~~----na~~i~-AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      ||.+|-+...+.-+--    -+.... .++|+-..    +++..++|++-|+.
T Consensus        65 a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad  113 (134)
T d2hmva1          65 FEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQ----NYYHHKVLEKIGAD  113 (134)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----SHHHHHHHHHHTCS
T ss_pred             ccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecc----cHhHHHHHHHCCCC
Confidence            8888877764422211    112222 35555543    35667788888874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.86  E-value=0.00089  Score=58.72  Aligned_cols=89  Identities=12%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|+|.|+|++|+.+|+.|.+.|.+|++             .|.+.+.+.+.++. +.+.     ...++ +.+ .+||+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~-------------~d~~~~~~~~a~~~-~~~~-----~~~~~~~~~-~~~Di   60 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIG-------------VSRQQSTCEKAVER-QLVD-----EAGQDLSLL-QTAKI   60 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHT-TSCS-----EEESCGGGG-TTCSE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEE-------------EECCchHHHHHHHh-hccc-----eeeeecccc-ccccc
Confidence            4799999999999999999999999988             55676776655543 3221     11223 333 58999


Q ss_pred             Eeeccccccccc---ccccccc-ceEEEecCCCC
Q psy1913         360 LVPAAIEKVIRK---SNADKVQ-AKIIVEAANGP  389 (535)
Q Consensus       360 LiPaA~~~~It~---~na~~i~-AkiIvEgAN~p  389 (535)
                      +|-|.....+..   +-++.++ -.+|+..++..
T Consensus        61 Iilavp~~~~~~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          61 IFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             EEECSCHHHHHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             ccccCcHhhhhhhhhhhhhhcccccceeeccccc
Confidence            999876443221   2223332 35777776654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.82  E-value=0.00091  Score=59.48  Aligned_cols=114  Identities=12%  Similarity=0.050  Sum_probs=69.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc--ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM--FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell--~~~  356 (535)
                      ++|.|+|.|++|..+|+.|.++|+.|.+             .|.+.++..+..++.+.....+..+....  ++.  -.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~-------------~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAV-------------FNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKK   68 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEE-------------EECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhccc
Confidence            4699999999999999999999999987             66888888888877654332222221111  111  123


Q ss_pred             ceEEeeccccccccc----cccccc-cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         357 VDILVPAAIEKVIRK----SNADKV-QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       357 ~DILiPaA~~~~It~----~na~~i-~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      +++.+.+........    .....+ .-++|++-....  .+.+..+.|.++|+.++-
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ld  126 (178)
T d1pgja2          69 PRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLG  126 (178)
T ss_dssp             SCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             ceEEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEec
Confidence            333333332221111    111122 235666666554  355777889999998873

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.013  Score=51.78  Aligned_cols=124  Identities=8%  Similarity=0.058  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHH
Q psy1913         252 GRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHT  331 (535)
Q Consensus       252 g~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~  331 (535)
                      |.|...+++          ..|.  +++|++|.|.|.|-+++.++..|.+.|++ |.|..+            +.+...+
T Consensus         2 g~Gf~~~l~----------~~~~--~~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nR------------t~~ka~~   56 (170)
T d1nyta1           2 GVGLLSDLE----------RLSF--IRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNR------------TVSRAEE   56 (170)
T ss_dssp             HHHHHHHHH----------HHTC--CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS------------SHHHHHH
T ss_pred             HhHHHHHHH----------HcCC--CCCCCEEEEECCcHHHHHHHHHhcccceE-EEeccc------------hHHHHHH
Confidence            566666665          3565  46999999999999999999999999998 444443            3445555


Q ss_pred             HHHHcCCcccCCCCcccCC-CCccccceEEeecccccccccc---ccccc-cceEEEecCCCC-CCHHHHHHHHhCCce
Q psy1913         332 YKITKGTIKGYPGTKSAPT-DIMFDKVDILVPAAIEKVIRKS---NADKV-QAKIIVEAANGP-LTPAAHAMLLKKNVL  404 (535)
Q Consensus       332 ~~~~~g~v~~~~~a~~i~~-ell~~~~DILiPaA~~~~It~~---na~~i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~  404 (535)
                      ..+......   ..+.++. +....++|++|-|+.-+.....   ....+ +..+|.+..=+| .|+-.. ..+++|..
T Consensus        57 l~~~~~~~~---~~~~~~~~~~~~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~-~A~~~G~~  131 (170)
T d1nyta1          57 LAKLFAHTG---SIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLA-WCEQRGSK  131 (170)
T ss_dssp             HHHHTGGGS---SEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHHH-HHHHTTCC
T ss_pred             HHHHHhhcc---cccccccccccccccceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCHHHH-HHHHcCCC
Confidence            444332110   1122222 3334679999999875543322   22233 357888999888 576554 45777763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.74  E-value=0.0016  Score=57.02  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=69.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCccc-------CC--C
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSA-------PT--D  351 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i-------~~--e  351 (535)
                      +||+|.|.|++|..+|..|.+.|+.|+.             -|.+.+.+...++........++.+..       ++  +
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   68 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLA-------------WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL   68 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh
Confidence            7999999999999999999999999987             335666766665544333222222211       11  1


Q ss_pred             CccccceEEeeccccccccc---ccccccc-ceEEEecCCCCC-CHHHHHHHHhCCc
Q psy1913         352 IMFDKVDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGPL-TPAAHAMLLKKNV  403 (535)
Q Consensus       352 ll~~~~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p~-T~eA~~iL~~rGI  403 (535)
                      .+ .+||+++.|...+.+..   +-++.++ -.+|+-..|.+. +.+..+++.+++.
T Consensus        69 ~~-~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          69 AV-KDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             HH-TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTC
T ss_pred             Hh-cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcC
Confidence            12 48999999987665422   2233442 245665555543 4566778887764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.64  E-value=0.0017  Score=59.65  Aligned_cols=111  Identities=17%  Similarity=0.157  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      .|.|+||.|.|||++|+.+|+.|...|++|++        |||..  -+ +.    ....       +....+.  +++ 
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~--------~d~~~--~~-~~----~~~~-------~~~~~~~l~~ll-  102 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLF--------YDPYL--SD-GV----ERAL-------GLQRVSTLQDLL-  102 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECTTS--CT-TH----HHHH-------TCEECSSHHHHH-
T ss_pred             eeeCceEEEeccccccccceeeeeccccceee--------ccCcc--cc-cc----hhhh-------ccccccchhhcc-
Confidence            58999999999999999999999999999987        55543  11 11    0011       1222333  333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-eecccc
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL-IIPDIF  410 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~-viPD~l  410 (535)
                      ..|||++.+..     .+.|+.+....++ -.+++-.|=|++ ..+| .+.|.++-|. +.=|++
T Consensus       103 ~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  167 (193)
T d1mx3a1         103 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  167 (193)
T ss_dssp             HHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             ccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence            46899977665     3444444455554 478999999995 4443 3667776553 444543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.63  E-value=0.0019  Score=59.44  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      +|.|+||.|+|||++|+.+|+.|...|++|++        ||+..   +...     ...       + ..+..  +++ 
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~--------~d~~~---~~~~-----~~~-------~-~~~~~l~~~l-   94 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT--------YDIFR---NPEL-----EKK-------G-YYVDSLDDLY-   94 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC---CHHH-----HHT-------T-CBCSCHHHHH-
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccc--------cCccc---cccc-----ccc-------e-eeeccccccc-
Confidence            57899999999999999999999999999988        44443   1111     111       1 11222  344 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++-.|=|++ ..+| .+.|.++-|.
T Consensus        95 ~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  152 (197)
T d1j4aa1          95 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF  152 (197)
T ss_dssp             HHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred             cccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccch
Confidence            47899998865     3445455444543 468888888884 4444 4567666553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.47  E-value=0.0029  Score=56.10  Aligned_cols=93  Identities=18%  Similarity=0.319  Sum_probs=61.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc-
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF-  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~-  354 (535)
                      ++++++|+|.|.|.+|+.+++.|...|++-+.|+.++            .+...+..++.+       .+.++- ++.+ 
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt------------~~ka~~l~~~~~-------~~~~~~~~~~~~   81 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT------------YERAVELARDLG-------GEAVRFDELVDH   81 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS------------HHHHHHHHHHHT-------CEECCGGGHHHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc------------HHHHHHHHHhhh-------cccccchhHHHH
Confidence            4799999999999999999999999999766665442            344445555443       121111 2222 


Q ss_pred             -ccceEEeeccc--ccccccccccccc-------ceEEEecCCC
Q psy1913         355 -DKVDILVPAAI--EKVIRKSNADKVQ-------AKIIVEAANG  388 (535)
Q Consensus       355 -~~~DILiPaA~--~~~It~~na~~i~-------AkiIvEgAN~  388 (535)
                       .++||+|-|+.  ..+|+.++.....       -.+|+.-|..
T Consensus        82 l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          82 LARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             HHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             hccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence             48999999975  4467777665331       1266666543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.37  E-value=0.00086  Score=58.04  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=67.9

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccC-CCCcccCC-CCccccc
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGY-PGTKSAPT-DIMFDKV  357 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~-~~a~~i~~-ell~~~~  357 (535)
                      +|+|+|.|.|-+|+++|+.|.+.|++|+.             .|-+.+.+.+..++.+..... ........ +-.-...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v-------------~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   68 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTV-------------ACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKH   68 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEE-------------EESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEE-------------EECChHHHHHHHhcccccccccccccchhhhHhhhhcc
Confidence            68999999999999999999999999876             446677777776654322111 00000000 1111345


Q ss_pred             eEEeecccccccccc---ccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccc
Q psy1913         358 DILVPAAIEKVIRKS---NADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANA  413 (535)
Q Consensus       358 DILiPaA~~~~It~~---na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNa  413 (535)
                      |+.+.+.... .+..   ......+.++--....+...+-++...+++..++.+.....
T Consensus        69 ~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  126 (182)
T d1e5qa1          69 DLVISLIPYT-FHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSA  126 (182)
T ss_dssp             SEEEECSCGG-GHHHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEECSCBCCH
T ss_pred             ceeEeeccch-hhhHHHHHHHhhccceeecccCcHHHHHHHHHhccccceeehhhhcch
Confidence            6666554322 1211   11222345554443333333445566778887776665554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.25  E-value=0.01  Score=53.54  Aligned_cols=101  Identities=10%  Similarity=0.146  Sum_probs=67.3

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|++|.|.|||++|+.+|+.+...|++|++        ||+..  -+           +      .....+. +-+-.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~--------~d~~~--~~-----------~------~~~~~~~l~ell~   91 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRG--------FSRTP--KE-----------G------PWRFTNSLEEALR   91 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEE--------ECSSC--CC-----------S------SSCCBSCSHHHHT
T ss_pred             cccCceEEEeccccccccceeeeecccccccc--------ccccc--cc-----------c------ceeeeechhhhhh
Confidence            48899999999999999999999999999998        33333  11           0      0111222 22235


Q ss_pred             cceEEeecccc-----cccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         356 KVDILVPAAIE-----KVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~~-----~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      +|||++.|..-     +.|+.+....++ -.+++..+=+++ ..+| .+.|.++-+.
T Consensus        92 ~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~  148 (181)
T d1qp8a1          92 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF  148 (181)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred             ccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence            88999987653     455566555554 367778888874 4443 4567766553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.23  E-value=0.006  Score=55.91  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=64.8

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      .+|.|+||.|.|||++|+.+|+.|...|++|++        |||..  .+           ...   ......+- +++ 
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~--------~d~~~--~~-----------~~~---~~~~~~~l~~l~-   95 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA--------YDPYP--MK-----------GDH---PDFDYVSLEDLF-   95 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE--------ECSSC--CS-----------SCC---TTCEECCHHHHH-
T ss_pred             ccccceeeeeeecccccccccccccccceeeec--------cCCcc--ch-----------hhh---cchhHHHHHHHH-
Confidence            358899999999999999999999999999998        34332  10           000   00111111 333 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNV  403 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI  403 (535)
                      ..|||++.+..     .+.|+.+....++ -.+++-.|=|.+ ..+| .+.|.+.-|
T Consensus        96 ~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i  152 (199)
T d1dxya1          96 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL  152 (199)
T ss_dssp             HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             HhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence            46888888754     3345555555553 468888888885 3333 344554433

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.18  E-value=0.012  Score=51.17  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=38.1

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +.++.   .|.+|+|.|.|.||..++.++...|++||++             |.+.+++...++
T Consensus        21 ~~~~~---~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v-------------~~~~~r~~~a~~   68 (170)
T d1e3ja2          21 RAGVQ---LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT-------------ARSPRRLEVAKN   68 (170)
T ss_dssp             HHTCC---TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHHH
T ss_pred             HhCCC---CCCEEEEEcccccchhhHhhHhhhccccccc-------------chHHHHHHHHHH
Confidence            45654   5889999999999999999999999999983             466666644443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.16  E-value=0.0026  Score=52.70  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +++|++|.|.|.|+||..-|+.|++.|++|+.++.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            47899999999999999999999999999988763

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.14  E-value=0.0012  Score=57.51  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDI  359 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DI  359 (535)
                      ++|.|.|+|++|+.+|+.|.+.|..|+.             .+.+.......+.+...+.       -+. ++ ..+||+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~-------------~~~~~~~~~~~~~~~~~~~-------~~~~e~-~~~~di   59 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVT-------------SLEGRSPSTIERARTVGVT-------ETSEED-VYSCPV   59 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEE-------------CCTTCCHHHHHHHHHHTCE-------ECCHHH-HHTSSE
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEE-------------EcCchhHHHHHhhhccccc-------ccHHHH-HhhcCe
Confidence            4799999999999999999999999887             2222222223232211111       122 33 357999


Q ss_pred             Eeeccccccccccccccc---cceEEEecCCCC--CCHHHHHHHHhCCceeec
Q psy1913         360 LVPAAIEKVIRKSNADKV---QAKIIVEAANGP--LTPAAHAMLLKKNVLIIP  407 (535)
Q Consensus       360 LiPaA~~~~It~~na~~i---~AkiIvEgAN~p--~T~eA~~iL~~rGI~viP  407 (535)
                      ++-|-..+... +.+..+   .-+++++.++..  ++.+..+.+.++|.+..|
T Consensus        60 Ii~~v~~~~~~-~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~~~d~~  111 (152)
T d1i36a2          60 VISAVTPGVAL-GAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAA  111 (152)
T ss_dssp             EEECSCGGGHH-HHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEEecCchHH-HHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccCCCccc
Confidence            99997755432 233222   125677665543  345555666666643333

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.13  E-value=0.0093  Score=51.59  Aligned_cols=110  Identities=13%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~D  358 (535)
                      ++|.+.|.||+|+++++-|.+.| .+|..             +|-+.+.+.++.++.+       ....++ +.+ .+||
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v-------------~~r~~~~~~~l~~~~~-------~~~~~~~~~v-~~~D   59 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYI-------------ANRGAEKRERLEKELG-------VETSATLPEL-HSDD   59 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEE-------------ECSSHHHHHHHHHHTC-------CEEESSCCCC-CTTS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEE-------------EeCChhHHHHhhhhcc-------cccccccccc-cccc
Confidence            47999999999999999887776 77766             4566777777776653       233343 333 3699


Q ss_pred             EEeeccccccccccccccc--cceEEEecCCCCCCHHHHHHHHhC--Cceeecccccc
Q psy1913         359 ILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTPAAHAMLLKK--NVLIIPDIFAN  412 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~r--GI~viPD~laN  412 (535)
                      +++.|-.+..+.. -...+  .-++|+.-+.+..+....+.|-..  =+..+|..-+-
T Consensus        60 iv~lavkP~~~~~-v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~  116 (152)
T d1yqga2          60 VLILAVKPQDMEA-ACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGK  116 (152)
T ss_dssp             EEEECSCHHHHHH-HHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGG
T ss_pred             eEEEecCHHHHHH-hHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhH
Confidence            9998876543322 12222  247888888887777766766432  24566665443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.12  E-value=0.0046  Score=55.85  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCc---
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIM---  353 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell---  353 (535)
                      .+..+|+|+|.|++|..+++.....|++|.+             -|.+.+.|.++....+.-.    ....+. +.+   
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~-------------~D~~~~~l~~l~~~~~~~~----~~~~~~~~~l~~~   92 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQI-------------FDINVERLSYLETLFGSRV----ELLYSNSAEIETA   92 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHHGGGS----EEEECCHHHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEE-------------EeCcHHHHHHHHHhhcccc----eeehhhhhhHHHh
Confidence            4568999999999999999999999999998             6788888887766543211    111222 222   


Q ss_pred             cccceEEeeccccccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeeccccccccCc
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPDIFANAGGV  416 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD~laNaGGV  416 (535)
                      -.+|||+|=|++   |....++.+-            |.+.-+. .+.|= |+=|+.+..||-
T Consensus        93 ~~~aDivI~aal---ipG~~aP~lI------------t~~mv~~-Mk~GS-VIVDvaidqGG~  138 (168)
T d1pjca1          93 VAEADLLIGAVL---VPGRRAPILV------------PASLVEQ-MRTGS-VIVDVAVDQGGC  138 (168)
T ss_dssp             HHTCSEEEECCC---CTTSSCCCCB------------CHHHHTT-SCTTC-EEEETTCTTCCS
T ss_pred             hccCcEEEEeee---cCCcccCeee------------cHHHHhh-cCCCc-EEEEeecCCCCc
Confidence            258999999987   3444444442            3333332 23443 333777777773

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.03  E-value=0.016  Score=52.71  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      ++.|++|.|.|||++|+.+|+.+...|.+|++        ||+.-  -....-.   ..        ....... +-+-.
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~--------~d~~~--~~~~~~~---~~--------~~~~~~~l~~ll~  102 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDY--------FDTHR--ASSSDEA---SY--------QATFHDSLDSLLS  102 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECSSC--CCHHHHH---HH--------TCEECSSHHHHHH
T ss_pred             eecccceEEeecccchHHHHHHHHhhcccccc--------ccccc--cccchhh---cc--------cccccCCHHHHHh
Confidence            47899999999999999999999999999987        45543  2222111   11        1111222 21234


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCce-eeccc
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGP-LTPAA-HAMLLKKNVL-IIPDI  409 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p-~T~eA-~~iL~~rGI~-viPD~  409 (535)
                      .||+++.+..     .+.|+.+....++ --+++--|=|+ +..+| .+.|.++-|. +.=|+
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV  165 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV  165 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEEC
Confidence            7899988764     3666666666664 47888999998 45444 4667777664 34454

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0029  Score=50.75  Aligned_cols=33  Identities=15%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      +++|++|+|.|+|..|..+|++|.+.|++|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~   34 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVM   34 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEe
Confidence            578999999999999999999999999999873

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.98  E-value=0.0054  Score=53.44  Aligned_cols=96  Identities=10%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCccccce
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDKVD  358 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~~D  358 (535)
                      ++|.|.|+|+.|+.+++-|.+.|.+|+.             ++-+.+.+.++.++.|       .....+  ++. ..||
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v-------------~~r~~~~~~~l~~~~g-------~~~~~~~~~~~-~~~d   59 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELII-------------SGSSLERSKEIAEQLA-------LPYAMSHQDLI-DQVD   59 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEE-------------ECSSHHHHHHHHHHHT-------CCBCSSHHHHH-HTCS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEE-------------EcChHHhHHhhccccc-------eeeechhhhhh-hccc
Confidence            4799999999999999999999999875             3456677777776654       222222  443 4799


Q ss_pred             EEeecccccccccccccccc-ceEEEecCCCCCCHHHHHHH
Q psy1913         359 ILVPAAIEKVIRKSNADKVQ-AKIIVEAANGPLTPAAHAML  398 (535)
Q Consensus       359 ILiPaA~~~~It~~na~~i~-AkiIvEgAN~p~T~eA~~iL  398 (535)
                      |++-|..++.+. +-.+.++ -++|+.-+.+-......+.|
T Consensus        60 vIilavkp~~~~-~vl~~l~~~~~iis~~agi~~~~l~~~l   99 (152)
T d2ahra2          60 LVILGIKPQLFE-TVLKPLHFKQPIISMAAGISLQRLATFV   99 (152)
T ss_dssp             EEEECSCGGGHH-HHHTTSCCCSCEEECCTTCCHHHHHHHH
T ss_pred             eeeeecchHhHH-HHhhhcccceeEecccccccHHHHHhhh
Confidence            999998765543 2233332 35667777665555555555

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.94  E-value=0.065  Score=47.04  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=72.1

Q ss_pred             HHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC
Q psy1913         270 CEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP  349 (535)
Q Consensus       270 ~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~  349 (535)
                      +..+++   ++++|.|.|.|.+++.++..|.+.|++-|.|..+            +.+......+..+       ...+.
T Consensus        10 ~~~~~~---~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR------------~~~ka~~L~~~~~-------~~~~~   67 (167)
T d1npya1          10 EKYHLN---KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR------------NVKTGQYLAALYG-------YAYIN   67 (167)
T ss_dssp             HHTTCC---TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS------------CHHHHHHHHHHHT-------CEEES
T ss_pred             HHcCCC---CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc------------cHHHHHHHHHhhh-------hhhhh
Confidence            355653   6899999999999999999999999865555543            3444445444432       12222


Q ss_pred             CCCccccceEEeeccccccccccc-----ccc--c-cceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         350 TDIMFDKVDILVPAAIEKVIRKSN-----ADK--V-QAKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       350 ~ell~~~~DILiPaA~~~~It~~n-----a~~--i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                       .+...++||+|-|+.-+......     .+.  + +..+|.+..=+| -|+=. +..+++|..++
T Consensus        68 -~~~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll-~~A~~~G~~~i  131 (167)
T d1npya1          68 -SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFI-RYAQARGKQTI  131 (167)
T ss_dssp             -CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHH-HHHHHTTCEEE
T ss_pred             -cccccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCHHH-HHHHHCCCeEE
Confidence             23345899999998744322111     111  2 357899988887 46644 44578887665

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.80  E-value=0.0085  Score=52.17  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      ++|.|.|+|++|..+|+.|.+.|.  +|++             .|.|.+.+...++. +.+.     ...+.  .....+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~-------------~D~~~~~~~~a~~~-~~~~-----~~~~~~~~~~~~~   62 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-------------YDINPESISKAVDL-GIID-----EGTTSIAKVEDFS   62 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-------------ECSCHHHHHHHHHT-TSCS-----EEESCGGGGGGTC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEE-------------EECChHHHHHHHHh-hcch-----hhhhhhhhhhccc
Confidence            379999999999999999999985  7888             56777777665543 3221     11222  334468


Q ss_pred             ceEEeeccccccccc---ccccccc-ceEEEecCCCC--CCHHHHHHHHhC
Q psy1913         357 VDILVPAAIEKVIRK---SNADKVQ-AKIIVEAANGP--LTPAAHAMLLKK  401 (535)
Q Consensus       357 ~DILiPaA~~~~It~---~na~~i~-AkiIvEgAN~p--~T~eA~~iL~~r  401 (535)
                      +|+++-|.....+..   +-.+.++ -.+|.+.+..-  +.....+.|.++
T Consensus        63 ~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~  113 (171)
T d2g5ca2          63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR  113 (171)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred             cccccccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc
Confidence            999999988655432   1122232 35777777743  334555556554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.014  Score=50.54  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=62.0

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEE
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDIL  360 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DIL  360 (535)
                      ||.+.|.|++|..+|+.|.+.|..++.             .|.+.. ..+..++.+..        ... +.+ .+||++
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~~-------------~~~~~~-~~~~~~~~~~~--------~~~~~~~-~~~~~~   58 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLVW-------------NRTFEK-ALRHQEEFGSE--------AVPLERV-AEARVI   58 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEEE-------------CSSTHH-HHHHHHHHCCE--------ECCGGGG-GGCSEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEEE-------------eCCHHH-HHHHHHHcCCc--------ccccccc-cceeEE
Confidence            689999999999999999999987765             334333 33344443321        122 222 356777


Q ss_pred             eecccccccccccccc----c-cceEEEecCCC-C-CCHHHHHHHHhCCceee
Q psy1913         361 VPAAIEKVIRKSNADK----V-QAKIIVEAANG-P-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       361 iPaA~~~~It~~na~~----i-~AkiIvEgAN~-p-~T~eA~~iL~~rGI~vi  406 (535)
                      +.|......-..-...    + +-++|++.+.. | ++.+..+.|.++|+.|+
T Consensus        59 i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          59 FTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             EECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             EecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            7665422211111111    1 34677766654 3 45677789999999998

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.71  E-value=0.018  Score=51.82  Aligned_cols=105  Identities=24%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFD  355 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~  355 (535)
                      .+.|+++.|.|+|++|+.+|+.+...|++|++        ||+..   +.......           +.+..+- +++ .
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~--------~d~~~---~~~~~~~~-----------~~~~~~l~ell-~   97 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA--------YDPYV---SPARAAQL-----------GIELLSLDDLL-A   97 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE--------ECTTS---CHHHHHHH-----------TCEECCHHHHH-H
T ss_pred             cccceeeeeccccchhHHHHHHhhhccceEEe--------ecCCC---ChhHHhhc-----------CceeccHHHHH-h
Confidence            57899999999999999999999999999998        45443   22221111           1111111 444 3


Q ss_pred             cceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         356 KVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       356 ~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      .|||++-|..     .+.|+.+....++ --+++--|=|++ ..+| .+.|.++-|.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~  154 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR  154 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEe
Confidence            7999988765     3455555556664 468999999995 4443 3456666554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0055  Score=53.80  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +.++.   .|.+|+|+|.|.||..+++++...|++|++++
T Consensus        22 ~~~~~---~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~   58 (168)
T d1piwa2          22 RNGCG---PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS   58 (168)
T ss_dssp             HTTCS---TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HhCcC---CCCEEEEECCCCcchhHHHHhhhccccccccc
Confidence            34554   58999999999999999999989999999854

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.1  Score=46.11  Aligned_cols=124  Identities=12%  Similarity=0.128  Sum_probs=77.6

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCC---cc
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGT---KS  347 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a---~~  347 (535)
                      ..|.  ++++++|.|.|.|-+|+.++..|.+.|++-+.|++++     +    =..+++....++.+.  .++..   ..
T Consensus        11 ~~~~--~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~-----~----~~~~~~~~l~~~~~~--~~~~~~~~~~   77 (182)
T d1vi2a1          11 ESGF--DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----D----EFFDKALAFAQRVNE--NTDCVVTVTD   77 (182)
T ss_dssp             HTTC--CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-----S----TTHHHHHHHHHHHHH--HSSCEEEEEE
T ss_pred             HcCC--CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc-----h----HHHHHHHHHHHHHHh--hcCcceEeee
Confidence            3565  5799999999999999999999999999888888763     1    224555544333210  01111   11


Q ss_pred             cCC--CCc--cccceEEeecccccccc------cccccccc-ceEEEecCCCC-CCHHHHHHHHhCCceeecc
Q psy1913         348 APT--DIM--FDKVDILVPAAIEKVIR------KSNADKVQ-AKIIVEAANGP-LTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       348 i~~--ell--~~~~DILiPaA~~~~It------~~na~~i~-AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD  408 (535)
                      +..  ++.  -.++|++|-|+.-+.-.      ..+...++ ..+|.+-.=+| .|+=. +.-+++|..++..
T Consensus        78 ~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll-~~a~~~g~~~i~G  149 (182)
T d1vi2a1          78 LADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLL-QQAQQAGCKTIDG  149 (182)
T ss_dssp             TTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHH-HHHHTTTCEEECH
T ss_pred             cccccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHH-HHHHHCcCeEecc
Confidence            111  121  24889999998744332      11233443 47899998777 56654 3347888877643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.012  Score=51.06  Aligned_cols=42  Identities=24%  Similarity=0.348  Sum_probs=35.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      .|.+|+|.|.|.||..++.++...|++|+++             |.+.+++...+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~-------------~~~~~~~~~a~   68 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAI-------------DIDDAKLELAR   68 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEE-------------ESCHHHHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCcccee-------------cchhhHHHhhh
Confidence            5889999999999999999999999999994             46666665444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.023  Score=51.21  Aligned_cols=102  Identities=11%  Similarity=0.155  Sum_probs=69.5

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMF  354 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~  354 (535)
                      ++.+++|.|.|||++|+.+|++|...|.+|++.        |+..  -.               .......+..  +++ 
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~--------d~~~--~~---------------~~~~~~~~~~l~ell-   94 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFY--------DIEN--KL---------------PLGNATQVQHLSDLL-   94 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE--------CSSC--CC---------------CCTTCEECSCHHHHH-
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeec--------cccc--cc---------------hhhhhhhhhhHHHHH-
Confidence            578999999999999999999999999999983        3332  00               0001112222  444 


Q ss_pred             ccceEEeeccc-----ccccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q psy1913         355 DKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGPL-TPAA-HAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p~-T~eA-~~iL~~rGI~  404 (535)
                      ..|||++-|..     .+.|+.+....++ -.+++-.|=|++ ..++ .+.|.++-+.
T Consensus        95 ~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~  152 (188)
T d1sc6a1          95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA  152 (188)
T ss_dssp             HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred             hhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence            36899988765     2566666666774 478899999994 4444 4567766554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.48  E-value=0.035  Score=49.89  Aligned_cols=112  Identities=14%  Similarity=0.080  Sum_probs=74.2

Q ss_pred             CCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         276 PCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       276 ~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      .++.|++|.|.|+|++|+.+|+.|...|.+|++        ||+..  .+...-..    .       +......  +++
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~--------~d~~~--~~~~~~~~----~-------~~~~~~~l~~~l   98 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY--------TDRHR--LPESVEKE----L-------NLTWHATREDMY   98 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE--------ECSSC--CCHHHHHH----H-------TCEECSSHHHHG
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEE--------Eeecc--cccccccc----c-------cccccCCHHHHH
Confidence            358999999999999999999999999999987        44443  33222111    1       1111222  343


Q ss_pred             cccceEEeeccc-----ccccccccccccc-ceEEEecCCCC-CCHHHH-HHHHhCCce-eeccc
Q psy1913         354 FDKVDILVPAAI-----EKVIRKSNADKVQ-AKIIVEAANGP-LTPAAH-AMLLKKNVL-IIPDI  409 (535)
Q Consensus       354 ~~~~DILiPaA~-----~~~It~~na~~i~-AkiIvEgAN~p-~T~eA~-~iL~~rGI~-viPD~  409 (535)
                       ..||+++.+..     .+.|+.+....++ --+++-.|-|. +..+|- +.|.++-|. ++=|+
T Consensus        99 -~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV  162 (188)
T d2naca1          99 -PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDV  162 (188)
T ss_dssp             -GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESC
T ss_pred             -HhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeC
Confidence             57899887754     4566666666664 46999999999 455543 556666554 45554

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.47  E-value=0.02  Score=51.30  Aligned_cols=50  Identities=16%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             HhCCCCCCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         271 EIGLEPCMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      .+|.  +|+||+|.|.| .|.+|+.+|+.|.+.|++|+.             ++.+.+++.+..+.
T Consensus        16 ~~~~--~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~-------------~~r~~~~~~~~~~~   66 (191)
T d1luaa1          16 AAGG--SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVL-------------CGRKLDKAQAAADS   66 (191)
T ss_dssp             HTTS--CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESSHHHHHHHHHH
T ss_pred             HcCC--CCCCCEEEEECCCHHHHHHHHHHHHhhccchhh-------------cccchHHHHHHHHH
Confidence            3554  69999999999 699999999999999999988             44777777666553

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.46  E-value=0.031  Score=49.45  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=70.2

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc--ccCC-CCc
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK--SAPT-DIM  353 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~--~i~~-ell  353 (535)
                      +++|++|.|.|.|.+++.++..|.+.| +|. |..            -+.++..+..+............  .+.. +-.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~-I~n------------R~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NII-IAN------------RTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD   80 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EEC------------SSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-cee-eeh------------hhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc
Confidence            479999999999999999999887766 443 332            34555544443221100000001  1122 223


Q ss_pred             cccceEEeecccccccccc------ccccc-cceEEEecCCCC-CCHHHHHHHHhCCceeecc
Q psy1913         354 FDKVDILVPAAIEKVIRKS------NADKV-QAKIIVEAANGP-LTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~------na~~i-~AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD  408 (535)
                      ..+.|++|.|..-+.....      +...+ +..+|.+....| .|+-. +..+++|..+++.
T Consensus        81 ~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~-~~a~~~G~~~i~G  142 (177)
T d1nvta1          81 LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLL-KEAKKVNAKTING  142 (177)
T ss_dssp             CTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHH-HHHHTTTCEEECT
T ss_pred             cchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHH-HHHHHCCCcccCC
Confidence            4578999999875443221      12233 467888999888 56654 4457888887753

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.019  Score=51.59  Aligned_cols=54  Identities=19%  Similarity=0.149  Sum_probs=44.1

Q ss_pred             CCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecC
Q psy1913         246 GRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       246 gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +..+.|..||...++          ..++  +++|++|+|.|-++ ||+-++.+|.++|+.|. ++++
T Consensus        15 ~~~PcTp~aI~~lL~----------~y~i--~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt-~~h~   69 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLE----------RYNI--DTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHR   69 (166)
T ss_dssp             SSCCHHHHHHHHHHH----------HTTC--CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECS
T ss_pred             CCCCchHHHHHHHHH----------HcCc--ccccceEEEEeccccccHHHHHHHHHhhcccc-cccc
Confidence            457999999876666          4565  58999999999877 99999999999999975 4443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.22  E-value=0.0089  Score=52.82  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcccc
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDK  356 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~  356 (535)
                      +..||+|.|+|++|+..++.|.+. +..+|+|+|.+-..-..                       .+....+. +.+..+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~   58 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK-----------------------TPVFDVADVDKHADD   58 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS-----------------------SCEEEGGGGGGTTTT
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc-----------------------cccccchhhhhhccc
Confidence            457999999999999999999874 79999999875211000                       01111222 334458


Q ss_pred             ceEEeeccccccccccccccccc
Q psy1913         357 VDILVPAAIEKVIRKSNADKVQA  379 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i~A  379 (535)
                      +|+++-|+....-.+--...+++
T Consensus        59 ~D~Vvi~tp~~~h~~~a~~aL~a   81 (170)
T d1f06a1          59 VDVLFLCMGSATDIPEQAPKFAQ   81 (170)
T ss_dssp             CSEEEECSCTTTHHHHHHHHHTT
T ss_pred             cceEEEeCCCcccHHHHHHHHHC
Confidence            99999998766543333344444

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.08  E-value=0.0085  Score=54.23  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~  313 (535)
                      .||+|-|||-.|+.++|.|.+. ...||+|.|..
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~   35 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS   35 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            3799999999999999999975 68999998853

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.012  Score=55.02  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=53.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC----CCcccCCC
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP----GTKSAPTD  351 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~----~a~~i~~e  351 (535)
                      .|+||++.|.|. +..|+.+|+.|++.|++|+.             +|.+.+.|.+..++.+.+..+.    ..+.+. .
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~-------------~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~-~   69 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVA-------------VSRTQADLDSLVRECPGIEPVCVDLGDWEATE-R   69 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHSTTCEEEECCTTCHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EECCHHHHHHHHHhcCCCeEEEEeCCCHHHHH-H
Confidence            479999999985 67999999999999999988             4477888888777765432221    111111 1


Q ss_pred             Ccc--ccceEEeecccc
Q psy1913         352 IMF--DKVDILVPAAIE  366 (535)
Q Consensus       352 ll~--~~~DILiPaA~~  366 (535)
                      +++  -+.|+||-+|..
T Consensus        70 ~~~~~g~iDilVnnAg~   86 (244)
T d1pr9a_          70 ALGSVGPVDLLVNNAAV   86 (244)
T ss_dssp             HHTTCCCCCEEEECCCC
T ss_pred             HHHHhCCceEEEecccc
Confidence            221  378999998853

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.031  Score=50.20  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             CCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEE
Q psy1913         247 RESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGN-VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       247 r~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVa  308 (535)
                      -.+.|..||...++          +.|+  +++|++|+|.|-++ ||+-+|.+|.++|+.|..
T Consensus        18 ~~PcTp~aii~lL~----------~~~i--~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~   68 (170)
T d1a4ia1          18 FIPCTPKGCLELIK----------ETGV--PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTT   68 (170)
T ss_dssp             CCCHHHHHHHHHHH----------TTTC--CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCChHHHHHHHHH----------HhCc--ccccceEEEEecCCccchHHHHHHHhccCceEE
Confidence            36899999876666          4565  58999999999866 999999999999999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.91  E-value=0.032  Score=48.01  Aligned_cols=47  Identities=21%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      ..++.   .|.+|+|.|.|.||..++..+...|++|++             ++.+.+++...+
T Consensus        22 ~~~~~---~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~-------------~~~~~~r~~~~k   68 (168)
T d1rjwa2          22 VTGAK---PGEWVAIYGIGGLGHVAVQYAKAMGLNVVA-------------VDIGDEKLELAK   68 (168)
T ss_dssp             HHTCC---TTCEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHH
T ss_pred             HhCCC---CCCEEEEeecccchhhhhHHHhcCCCeEec-------------cCCCHHHhhhhh
Confidence            34554   588999999999999999999999999888             446666665443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.028  Score=49.03  Aligned_cols=118  Identities=12%  Similarity=0.086  Sum_probs=66.1

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcc
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKS  347 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~  347 (535)
                      +.++.   .|.+|+|+|.|.+|..++.++...|+ +|++             .|.+..++...+ +.|-  +..+.....
T Consensus        21 ~~~~~---~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~-------------~d~~~~rl~~a~-~~Ga~~~~~~~~~~~   83 (171)
T d1pl8a2          21 RGGVT---LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVV-------------TDLSATRLSKAK-EIGADLVLQISKESP   83 (171)
T ss_dssp             HHTCC---TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE-------------EESCHHHHHHHH-HTTCSEEEECSSCCH
T ss_pred             HhCCC---CCCEEEEECCCccHHHHHHHHHHcCCceEEe-------------ccCCHHHHHHHH-HhCCccccccccccc
Confidence            45554   47899999999999999999999999 6777             446667665443 4431  111111000


Q ss_pred             cCC-CC----ccccceEEeecccccccccccccc--ccceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         348 APT-DI----MFDKVDILVPAAIEKVIRKSNADK--VQAKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       348 i~~-el----l~~~~DILiPaA~~~~It~~na~~--i~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      ... +.    ....+|+.|.|+.....-..-...  -..++|.=|-... .+-....+ ..|++.+.
T Consensus        84 ~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~-~~k~l~i~  149 (171)
T d1pl8a2          84 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHA-AIREVDIK  149 (171)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHH-HHTTCEEE
T ss_pred             ccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHH-HHCCcEEE
Confidence            000 11    234679999988643222222222  2346666554332 33333333 44677665

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.012  Score=50.75  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .|+|++|.|.|.|+||..-|+.|.+.|++|+.|+
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            3789999999999999999999999999999987

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.32  E-value=0.015  Score=52.08  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-CeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-AKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-akVVaVsD~  312 (535)
                      ++|+|-|||-.|+.++|.|.+.+ ..||+|.|.
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~   34 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT   34 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEES
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecC
Confidence            48999999999999999998764 899999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.037  Score=48.16  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             HhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         271 EIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +.++.   .|.+|+|+|.|.||..+++++...|+++|++++
T Consensus        25 ~~~~~---~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~   62 (168)
T d1uufa2          25 HWQAG---PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT   62 (168)
T ss_dssp             HTTCC---TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HhCCC---CCCEEEEeccchHHHHHHHHhhcccccchhhcc
Confidence            34554   589999999999999999999999999998553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.23  E-value=0.066  Score=46.66  Aligned_cols=113  Identities=10%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CC-c
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DI-M  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--el-l  353 (535)
                      .|.+|+|.|.|.+|..++.++...|++.|.++|            .+.+++...+ +.|.  +.++. ...+..  +. -
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~------------~~~~k~~~~~-~~ga~~~i~~~-~~~~~~~~~~~~   97 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD------------VKEEKLKLAE-RLGADHVVDAR-RDPVKQVMELTR   97 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE------------SSHHHHHHHH-HTTCSEEEETT-SCHHHHHHHHTT
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCccccccc------------chhHHHHHHh-hcccceeecCc-ccHHHHHHHhhC
Confidence            478999999999999999999888876555544            4555554444 3331  11111 111110  11 1


Q ss_pred             cccceEEeeccccccccccccccc--cceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      ...+|+.|.|+.....=......+  ..++|.=|...+++-.... |..|++.+.
T Consensus        98 ~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~-l~~k~~~i~  151 (172)
T d1h2ba2          98 GRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIR-VISSEVSFE  151 (172)
T ss_dssp             TCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCCCCCHHH-HHHTTCEEE
T ss_pred             CCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccccCCHHH-HHhCCcEEE
Confidence            246899999987543222223333  4677777654444433333 334666664

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.038  Score=51.39  Aligned_cols=74  Identities=19%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-----
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-----  350 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-----  350 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.++|.+..++.+.+..+. . .+++     
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~~~~~~~~~~-~-Dv~~~~~v~   66 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVA-------------VTRTNSDLVSLAKECPGIEPVC-V-DLGDWDATE   66 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHSTTCEEEE-C-CTTCHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHhcCCCeEEE-E-eCCCHHHHH
Confidence            478999999995 56999999999999999998             4477788888777654432221 0 1111     


Q ss_pred             CCcc--ccceEEeeccc
Q psy1913         351 DIMF--DKVDILVPAAI  365 (535)
Q Consensus       351 ell~--~~~DILiPaA~  365 (535)
                      ++++  -..|+||-+|.
T Consensus        67 ~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_          67 KALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             HHHTTCCCCSEEEECCC
T ss_pred             HHHHHcCCCeEEEECCc
Confidence            1121  37899999985

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.16  E-value=0.052  Score=48.60  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.5

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      ||+|=|||-.|+.+.|.+.+.+..||+|-|..
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~   33 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPF   33 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCC
Confidence            78999999999999999999999999988753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.92  E-value=0.052  Score=48.31  Aligned_cols=118  Identities=13%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc-----C---CCCcc-cC-C
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG-----Y---PGTKS-AP-T  350 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~-----~---~~a~~-i~-~  350 (535)
                      ++|+|+|.|-||..+|..|+ +|.+|++             -|+|...+.++.+..-.+..     +   ..... .+ .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g-------------~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~   66 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTI-------------VDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLD   66 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEE-------------ECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESC
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEE-------------EECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccch
Confidence            47999999999999997664 6999999             66887777665432110000     0   00000 00 1


Q ss_pred             -CCccccceEEeecccccccccccccccc---------------ceEEEecCCCC-CCHHHHHHHHhCCceeecccccc
Q psy1913         351 -DIMFDKVDILVPAAIEKVIRKSNADKVQ---------------AKIIVEAANGP-LTPAAHAMLLKKNVLIIPDIFAN  412 (535)
Q Consensus       351 -ell~~~~DILiPaA~~~~It~~na~~i~---------------AkiIvEgAN~p-~T~eA~~iL~~rGI~viPD~laN  412 (535)
                       ..-..+||+++-|.....-...+...+.               .-+|.+..=.| +|.+-...+.+..+.+-|.++.-
T Consensus        67 ~~~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~~~PE~i~~  145 (196)
T d1dlja2          67 SKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRE  145 (196)
T ss_dssp             HHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCCCT
T ss_pred             hhhhhhccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhccchhhcch
Confidence             1113578988888765432222322221               22444433333 34455555666677777777644

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.83  E-value=0.04  Score=50.06  Aligned_cols=47  Identities=21%  Similarity=0.247  Sum_probs=38.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      +...+|.|.|.|.||..+++.....|+.|.+             -|++++.+.+.....+
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v-------------~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMA-------------TDVRAATKEQVESLGG   73 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCSTTHHHHHHTTC
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEE-------------EeccHHHHHHHHHhhc
Confidence            3457999999999999999999999999988             5677777766665443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.80  E-value=0.03  Score=50.09  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .||+|-|||..|+.+++.|.+. ...||+|.|.
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~   35 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT   35 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            6999999999999999999874 5899999884

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.45  E-value=0.024  Score=49.30  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      ++||+|+|.|+.|..+|..|.++|++-|.|.|..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            6899999999999999999999999755666764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.40  E-value=0.046  Score=46.28  Aligned_cols=42  Identities=12%  Similarity=-0.020  Sum_probs=34.6

Q ss_pred             cEEEEE-ccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         281 KTYIVQ-GFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       281 ~~VaIQ-GfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +||+|. |.|++|+.+|+.|.+.|++|+..+             -|.+++.+..++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~-------------R~~e~~~~l~~~   43 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGS-------------RREEKAEAKAAE   43 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEE-------------SSHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEE-------------CCHHHHHHHHHH
Confidence            479999 789999999999999999999733             677777666554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.32  E-value=0.057  Score=46.86  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC-CcccCCCCc-c
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG-TKSAPTDIM-F  354 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~-a~~i~~ell-~  354 (535)
                      +.++|+|.|.|+||+.+|..|...|  ..|+-             -|+|.+.+............+.. ....+.+.- .
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL-------------~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~   70 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVI-------------VDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC   70 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEE-------------ECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEE-------------eecccchhHHHHHHHhccccccCCceEeeccHHHh
Confidence            4579999999999999999999877  36666             34665544332221110001111 111122111 2


Q ss_pred             ccceEEeecccccc
Q psy1913         355 DKVDILVPAAIEKV  368 (535)
Q Consensus       355 ~~~DILiPaA~~~~  368 (535)
                      .+|||+|-||....
T Consensus        71 ~~adivvitag~~~   84 (146)
T d1ez4a1          71 KDADLVVITAGAPQ   84 (146)
T ss_dssp             TTCSEEEECCCC--
T ss_pred             ccccEEEEeccccc
Confidence            58999999886443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.24  E-value=0.1  Score=45.87  Aligned_cols=105  Identities=16%  Similarity=0.207  Sum_probs=68.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCC-CcccCC--CCc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPG-TKSAPT--DIM-FD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~-a~~i~~--ell-~~  355 (535)
                      .||+|.|+|++|+..++.|... ++.|+||+|            .|.+.+.+..++.+    ++. .+.+++  +++ ..
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~   65 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVAS------------RSLEKAKAFATANN----YPESTKIHGSYESLLEDP   65 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC------------SSHHHHHHHHHHTT----CCTTCEEESSHHHHHHCT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEe------------CCccccccchhccc----cccceeecCcHHHhhhcc
Confidence            5899999999999999888775 789999875            56666666666543    222 233444  566 45


Q ss_pred             cceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHHH---HHhCCcee
Q psy1913         356 KVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHAM---LLKKNVLI  405 (535)
Q Consensus       356 ~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~i---L~~rGI~v  405 (535)
                      ++|+++-|+.. ..+.+.+...   ...+++|-   |+  + .|++++   .+++|+.+
T Consensus        66 ~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~~EK---P~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          66 EIDALYVPLPT-SLHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             TCCEEEECCCG-GGHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccceeeecccc-hhhcchhhhhhhccceeeccc---ccccCHHHHHHHHHHHHhhCCEE
Confidence            88999987643 3444443332   45788884   52  3 344443   45666655

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.19  E-value=0.037  Score=51.44  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc---ccCCCCcccCC---
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI---KGYPGTKSAPT---  350 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v---~~~~~a~~i~~---  350 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.|.+..++.+..   .+....+.+..   
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~-------------~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~   69 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVA-------------CDIEEGPLREAAEAVGAHPVVMDVADPASVERGFA   69 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHH
Confidence            68999999996 56999999999999999988             557788887776654311   01111111111   


Q ss_pred             CCcc--ccceEEeeccc
Q psy1913         351 DIMF--DKVDILVPAAI  365 (535)
Q Consensus       351 ell~--~~~DILiPaA~  365 (535)
                      ++.+  -..|+||-+|.
T Consensus        70 ~~~~~~g~iDilVnnAG   86 (242)
T d1ulsa_          70 EALAHLGRLDGVVHYAG   86 (242)
T ss_dssp             HHHHHHSSCCEEEECCC
T ss_pred             HHHHhcCCceEEEECCc
Confidence            1111  36899999985

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.01  E-value=0.08  Score=46.67  Aligned_cols=42  Identities=17%  Similarity=0.159  Sum_probs=34.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      .|.+|+|.|.|.||..+++++...|+ +|++             +|.+.+++...+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~-------------~d~~~~r~~~a~   69 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIG-------------VGSRPICVEAAK   69 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEE-------------ECCCHHHHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccccccccc-------------ccchhhhHHHHH
Confidence            58899999999999999999999998 5777             456666655443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.12  Score=43.93  Aligned_cols=104  Identities=10%  Similarity=0.087  Sum_probs=62.2

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH---cCCcccCCCCcccCCCCc----c
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT---KGTIKGYPGTKSAPTDIM----F  354 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~---~g~v~~~~~a~~i~~ell----~  354 (535)
                      +|+|.|||.+|+.+++.|.+.|..|+.|-             .|.+...+..++   .+ +.-+. +...++++|    -
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId-------------~d~~~~~~~~~~~~~~~-~~vi~-Gd~~d~~~L~~a~i   69 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVIS-------------NLPEDDIKQLEQRLGDN-ADVIP-GDSNDSSVLKKAGI   69 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEE-------------CCCHHHHHHHHHHHCTT-CEEEE-SCTTSHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEe-------------ccchhHHHHHHHhhcCC-cEEEE-ccCcchHHHHHhcc
Confidence            69999999999999999999999988754             333333222221   11 10000 011111333    1


Q ss_pred             ccceEEeeccccccccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q psy1913         355 DKVDILVPAAIEKVIRK---SNADKV--QAKIIVEAANGPLTPAAHAMLLKKNVL  404 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~---~na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI~  404 (535)
                      .+||.+|-++-....|-   ..+.++  .+++|+...|    ++-.+.|++-|+-
T Consensus        70 ~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad  120 (153)
T d1id1a_          70 DRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD----SKNLNKIKMVHPD  120 (153)
T ss_dssp             TTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS----GGGHHHHHTTCCS
T ss_pred             ccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcC----HHHHHHHHHCCCC
Confidence            47899988876433332   233333  3588888654    5667788998863

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.58  E-value=0.05  Score=47.99  Aligned_cols=32  Identities=25%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ||||+|+|.|..|..+|..|.+.|.+|+ |-|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~-vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVT-VFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEE-EECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEE-EEeC
Confidence            6899999999999999999999999965 4554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.54  E-value=0.066  Score=48.17  Aligned_cols=40  Identities=13%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      ++|+|+|.|-||..+|..|+++|.+|++             -|+|.+.+..+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g-------------~D~n~~~i~~ln   40 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIG-------------VDVSSTKIDLIN   40 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEE-------------EeCCHHHHHHhc
Confidence            4799999999999999999999999998             556666655554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.51  E-value=0.23  Score=43.62  Aligned_cols=79  Identities=8%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             hCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-
Q psy1913         272 IGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-  350 (535)
Q Consensus       272 ~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-  350 (535)
                      .+.  ++++++|.|.|.|.+++.++..|.+.+.+|+- ..            =+.+.+.+..+..+...   ....++. 
T Consensus        12 ~~~--~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I-~n------------R~~~~a~~l~~~~~~~~---~~~~~~~~   73 (171)
T d1p77a1          12 LNW--LRPNQHVLILGAGGATKGVLLPLLQAQQNIVL-AN------------RTFSKTKELAERFQPYG---NIQAVSMD   73 (171)
T ss_dssp             TTC--CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE-EE------------SSHHHHHHHHHHHGGGS---CEEEEEGG
T ss_pred             cCC--CCCCCEEEEECCcHHHHHHHHHHcccCceeee-cc------------chHHHHHHHHHHHhhcc---ccchhhhc
Confidence            454  47999999999999999999999987777553 33            33455655555443211   1112222 


Q ss_pred             CCccccceEEeecccccc
Q psy1913         351 DIMFDKVDILVPAAIEKV  368 (535)
Q Consensus       351 ell~~~~DILiPaA~~~~  368 (535)
                      +.-..++|++|-|+.-+.
T Consensus        74 ~~~~~~~diiIN~tp~g~   91 (171)
T d1p77a1          74 SIPLQTYDLVINATSAGL   91 (171)
T ss_dssp             GCCCSCCSEEEECCCC--
T ss_pred             cccccccceeeecccccc
Confidence            223468999999987554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.51  E-value=0.23  Score=42.63  Aligned_cols=118  Identities=15%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             HhCCCCCCCCcEEEEEcc-ccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCc
Q psy1913         271 EIGLEPCMENKTYIVQGF-GNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTK  346 (535)
Q Consensus       271 ~~g~~~~l~g~~VaIQGf-GnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~  346 (535)
                      +.++.   .|.+|+|.|. |.+|..++.++...|+ +|++ .            +.+.+.+...++ .|-  +.++....
T Consensus        22 ~~~~~---~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~-~------------~~~~~~~~~~~~-~Ga~~~i~~~~~~   84 (170)
T d1jvba2          22 KASLD---PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIG-V------------DVREEAVEAAKR-AGADYVINASMQD   84 (170)
T ss_dssp             HTTCC---TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEE-E------------ESSHHHHHHHHH-HTCSEEEETTTSC
T ss_pred             HhCCC---CCCEEEEEeccccceeeeeecccccccccccc-c------------ccchhhHHHHHH-cCCceeeccCCcC
Confidence            34554   5789999995 9999999999998886 5555 3            355565544443 331  11111111


Q ss_pred             ccCC--C-CccccceEEeeccccccccccccccc--cceEEEecCCCC-CCHHHHHHHHhCCceee
Q psy1913         347 SAPT--D-IMFDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAANGP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       347 ~i~~--e-ll~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN~p-~T~eA~~iL~~rGI~vi  406 (535)
                      ....  + .....+|+++.|+.....-......+  ..++|+=|..+. ++-....+ .-|++.+.
T Consensus        85 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~-~~k~i~i~  149 (170)
T d1jvba2          85 PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI-TLSEIQFV  149 (170)
T ss_dssp             HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH-HHHTCEEE
T ss_pred             HHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHH-HhCCcEEE
Confidence            1110  1 11346899999987544333434444  357776665443 44333344 34667665

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.48  E-value=0.096  Score=47.08  Aligned_cols=77  Identities=23%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             hCCCCCCCCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc-ccCCCCcccC
Q psy1913         272 IGLEPCMENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI-KGYPGTKSAP  349 (535)
Q Consensus       272 ~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v-~~~~~a~~i~  349 (535)
                      .++.   .|.+|+|.|.|.||..++..+...|+ +|++             +|.+.+++.. .++.|.- .-.+..+.+.
T Consensus        21 a~v~---~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~-------------~d~~~~rl~~-a~~~Ga~~~~~~~~~~~~   83 (195)
T d1kola2          21 AGVG---PGSTVYVAGAGPVGLAAAASARLLGAAVVIV-------------GDLNPARLAH-AKAQGFEIADLSLDTPLH   83 (195)
T ss_dssp             TTCC---TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE-------------EESCHHHHHH-HHHTTCEEEETTSSSCHH
T ss_pred             hCCC---CCCEEEEECcCHHHHHHHHHHHhhcccceee-------------ecccchhhHh-hhhccccEEEeCCCcCHH
Confidence            4554   58899999999999999999888888 5555             3355566543 3444421 1111111110


Q ss_pred             C---CCc-cccceEEeeccc
Q psy1913         350 T---DIM-FDKVDILVPAAI  365 (535)
Q Consensus       350 ~---ell-~~~~DILiPaA~  365 (535)
                      .   ++. ...+|+.+.|..
T Consensus        84 ~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          84 EQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             HHHHHHHSSSCEEEEEECCC
T ss_pred             HHHHHHhCCCCcEEEEECcc
Confidence            0   121 346899998875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.36  E-value=0.084  Score=46.16  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .|.+|+|.|.|.||..++.++...|+++|.++|
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~   60 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVD   60 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeec
Confidence            589999999999999999999999998887765

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.25  E-value=0.085  Score=43.98  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=58.0

Q ss_pred             cEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCcccc
Q psy1913         281 KTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIMFDK  356 (535)
Q Consensus       281 ~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell~~~  356 (535)
                      |+|||.|.    +..|..+.+.|.+.|++|+.|        ||++               +++.+++-...++ + +..+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pV--------nP~~---------------~~i~G~~~y~sl~-~-lp~~   56 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPV--------NPNY---------------DEIEGLKCYRSVR-E-LPKD   56 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC---------------SEETTEECBSSGG-G-SCTT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEE--------cccc---------------ccccCccccccch-h-cccc
Confidence            68999994    788999999999999999874        5665               1222211111111 1 2234


Q ss_pred             ceEEeeccc----cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         357 VDILVPAAI----EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       357 ~DILiPaA~----~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      +|+.+-|..    ..++.+--+..+++ ++.++  +...+++.+++++.||.++
T Consensus        57 ~D~vvi~vp~~~~~~~l~~~~~~g~k~-v~~~~--g~~~~~~~~~a~~~gi~vi  107 (116)
T d1y81a1          57 VDVIVFVVPPKVGLQVAKEAVEAGFKK-LWFQP--GAESEEIRRFLEKAGVEYS  107 (116)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHTTCCE-EEECT--TSCCHHHHHHHHHHTCEEE
T ss_pred             ceEEEEEeCHHHHHHHHHHHHhcCCce-EEecc--chhhHHHHHHHHHcCCEEE
Confidence            565555533    23333222223332 33332  2357899999999999874

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.20  E-value=0.6  Score=41.23  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .+|+|=|||-.|+.+.|.|.+.+..||+|-|.
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCC
Confidence            47999999999999999999999999999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.00  E-value=0.11  Score=48.34  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=37.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+++.+..+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~~~~~~~   47 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVV-------------ASRNLEEASEAAQ   47 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            478999999996 56999999999999999988             5577777766543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.99  E-value=0.049  Score=51.31  Aligned_cols=46  Identities=24%  Similarity=0.259  Sum_probs=37.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      -|+||++.|.|. +..|+.+|+.|++.|++|+.             +|.+.+.|.+..++
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l-------------~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTI-------------TGRSSERLEETRQI   48 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            478999999985 67999999999999999988             45777777766553

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.91  E-value=0.22  Score=41.26  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      .+++|+|.|.|.+|-.+|..|.+.|.+|.-|.=++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            46899999999999999999999999987654333

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.88  E-value=0.12  Score=48.35  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=37.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.++|.+..++
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~~   51 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYT-------------CSRNQKELNDCLTQ   51 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            579999999996 46999999999999999988             44666766665443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.78  E-value=0.12  Score=42.99  Aligned_cols=31  Identities=32%  Similarity=0.469  Sum_probs=28.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++++|+|.|.|.+|..+|..|.+.|.+|.-|
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtli   59 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVI   59 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEE
Confidence            6789999999999999999999999997665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.77  E-value=0.094  Score=45.96  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa  308 (535)
                      .|.+|.|+|.|.||..++.++...|+ +|++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~   58 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIV   58 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccc
Confidence            58999999999999999999999998 6777

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.59  E-value=0.54  Score=43.55  Aligned_cols=110  Identities=14%  Similarity=0.212  Sum_probs=75.7

Q ss_pred             HHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCC-CCCCHHHHHHHHHHcCCcccCCCCcc
Q psy1913         269 MCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKG-TEINYKDLHTYKITKGTIKGYPGTKS  347 (535)
Q Consensus       269 ~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G-~dLDi~~L~~~~~~~g~v~~~~~a~~  347 (535)
                      ++..|.  +|+..||++.|.|..|..+|++|.+.+.+=+-..|++|-|++... .+++.... .+.+... .     ...
T Consensus        17 ~~~~g~--~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~-~~~~~~~-~-----~~~   87 (222)
T d1vl6a1          17 LKLTEK--KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHL-EIARITN-P-----ERL   87 (222)
T ss_dssp             HHHHTC--CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHH-HHHHTSC-T-----TCC
T ss_pred             HHHhCC--ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHH-HHHhhhc-c-----hhh
Confidence            445664  489999999999999999999999999999999999999997742 12443222 1221110 0     000


Q ss_pred             cCC--CCccccceEEeeccccccccccccccccc-eEEEecCCC
Q psy1913         348 APT--DIMFDKVDILVPAAIEKVIRKSNADKVQA-KIIVEAANG  388 (535)
Q Consensus       348 i~~--ell~~~~DILiPaA~~~~It~~na~~i~A-kiIvEgAN~  388 (535)
                      ...  +++ ..+|+++-...++++++|-..+..- .||---+|-
T Consensus        88 ~~~l~~~l-~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          88 SGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             CSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             hcchHhhc-cCcceeccccccccccHHHHhhcCCCCEEEecCCC
Confidence            111  222 3789999999999999877666633 677777774

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.56  E-value=0.12  Score=48.53  Aligned_cols=45  Identities=13%  Similarity=0.168  Sum_probs=37.4

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +|+||+++|.| .|.+|+.+|+.|++.|++|+.             +|.+.+++.+..+
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii-------------~~r~~~~l~~~~~   67 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVI-------------ASRKMDVLKATAE   67 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EECCHHHHHHHHH
Confidence            68999999999 588999999999999999998             4467666655443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.083  Score=44.80  Aligned_cols=31  Identities=13%  Similarity=0.090  Sum_probs=28.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ++|+|.|.|++|..+|..|++.|..|..+.-
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r   31 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            5899999999999999999999999988754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.13  Score=47.71  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=38.8

Q ss_pred             CCCCcEEEEEcccc-HHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGFGN-VGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGfGn-VG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|.|+++.|.|.+. .|+.+|+.|++.|++|+.             +|.+.+.|.+..++
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l-------------~~r~~~~l~~~~~~   50 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVL-------------WDINKHGLEETAAK   50 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            58999999999754 999999999999999988             45788877776554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.099  Score=48.45  Aligned_cols=47  Identities=19%  Similarity=0.150  Sum_probs=39.2

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      +|+||++.|.|. +..|+.+|+.|++.|++|+.             +|.+.+.|.+..++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~-------------~~r~~~~l~~~~~~~   48 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIG-------------TATSENGAQAISDYL   48 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE-------------EESSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EeCCHHHHHHHHHHh
Confidence            479999999884 67999999999999999987             457777787776654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.41  E-value=0.2  Score=43.90  Aligned_cols=105  Identities=10%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             CCcEEEEEccccHHHH-HHHHHHHCC--CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQGFGNVGFH-AARYFRRGR--AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~-~A~~L~e~G--akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell  353 (535)
                      +..+|+|+|+|..|+. .+..+.+.+  .+|++|+|            .|.+......++.+..      ...++  +++
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d------------~~~~~~~~~~~~~~~~------~~~~~~~ell   63 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS------------RTRSHAEEFAKMVGNP------AVFDSYEELL   63 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEEC------------SSHHHHHHHHHHHSSC------EEESCHHHHH
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEe------------ccHhhhhhhhcccccc------ceeeeeeccc
Confidence            4579999999999986 467777643  68999876            4556666666655422      22334  566


Q ss_pred             c-ccceEEeeccccccccccccccc---cceEEEecCCCCC--C-HHHHHH---HHhCCcee
Q psy1913         354 F-DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPL--T-PAAHAM---LLKKNVLI  405 (535)
Q Consensus       354 ~-~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~--T-~eA~~i---L~~rGI~v  405 (535)
                      + .++|+++-|+. +..+.+.+...   ...+++|=   |+  + .|+.++   .+++|+.+
T Consensus        64 ~~~~id~v~I~tp-~~~h~~~~~~al~~gk~V~~EK---Pl~~~~~e~~~l~~~~~~~~~~~  121 (181)
T d1zh8a1          64 ESGLVDAVDLTLP-VELNLPFIEKALRKGVHVICEK---PISTDVETGKKVVELSEKSEKTV  121 (181)
T ss_dssp             HSSCCSEEEECCC-GGGHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHCSSCE
T ss_pred             cccccceeecccc-ccccccccccccccchhhhcCC---CCcCCHHHHHHHHHHHHHhCCeE
Confidence            4 47899988775 44455544433   34688876   53  2 455544   34566654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.39  E-value=0.15  Score=44.00  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=25.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVa  308 (535)
                      .+++|+|.|.|+||+++|..|...|.  .|+-
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L   36 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVL   36 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEE
Confidence            57899999999999999999988774  5554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.35  E-value=0.12  Score=48.30  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+++.+..++.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~~~~~~~~~~   50 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVL-------------ADVLDEEGAATARELG   50 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHTTG
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHhC
Confidence            589999999996 46999999999999999887             5578888888776643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.19  E-value=0.14  Score=47.73  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      +|+||++.|.| .+.+|+.+|+.|++.|++|+.             ++.+.+.|.+..+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i-------------~~r~~~~l~~~~~   48 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYT-------------CSRNEKELDECLE   48 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            57999999999 577999999999999999888             3366666555443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.11  E-value=0.19  Score=43.32  Aligned_cols=74  Identities=18%  Similarity=0.109  Sum_probs=43.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccC-C-CCc-cc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAP-T-DIM-FD  355 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~-~-ell-~~  355 (535)
                      .+|+|.|.|+||.++|..|...|.  .++-             -|++.+.+............|.+...+. . +.- ..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL-------------~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVL-------------EDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEE-------------ECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEE-------------EEeccccchhHHHHHHhccccCCCceeecCCCHHHhh
Confidence            479999999999999999998875  5654             3355544432221111011222222222 1 222 25


Q ss_pred             cceEEeeccccc
Q psy1913         356 KVDILVPAAIEK  367 (535)
Q Consensus       356 ~~DILiPaA~~~  367 (535)
                      +|||+|=+|...
T Consensus        69 daDvVVitaG~~   80 (143)
T d1llda1          69 DADMVVITAGPR   80 (143)
T ss_dssp             TCSEEEECCCCC
T ss_pred             CCcEEEEecccc
Confidence            899999998643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.07  E-value=0.1  Score=48.86  Aligned_cols=44  Identities=16%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.|.+..+
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~l~~~~~   46 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSL-------------VDVSSEGLEASKA   46 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            68999999985 56999999999999999887             5577776665543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.04  E-value=0.15  Score=47.56  Aligned_cols=36  Identities=22%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCCCCCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEE
Q psy1913         273 GLEPCMENKTYIVQGFG---NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       273 g~~~~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVa  308 (535)
                      |++-+|+||++.|.|.+   -.|+.+|+.|++.|++|+.
T Consensus         1 ~~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi   39 (297)
T d1d7oa_           1 GLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILV   39 (297)
T ss_dssp             CCCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEE
Confidence            45567999999999986   4999999999999999975

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.12  Score=48.08  Aligned_cols=45  Identities=20%  Similarity=0.137  Sum_probs=37.7

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      ++||++.|.|. +-.|..+|+.|++.|++|+.             +|.+.+.+.+..++
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~~~~~~~~   46 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVAL-------------VDWNLEAGVQCKAA   46 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            36899999996 56999999999999999988             55888888776654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.93  E-value=0.24  Score=43.53  Aligned_cols=119  Identities=17%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHH--cCCcccCCCCcccCC-CC
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKIT--KGTIKGYPGTKSAPT-DI  352 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~--~g~v~~~~~a~~i~~-el  352 (535)
                      +...+|+|.|.|+||..+|..|...|.  .++-             -|++.+........  +.....+ ....+.. +.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvL-------------iD~~~~~a~g~alDl~h~~~~~~-~~~~~~~~d~   83 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELAL-------------VDVLEDKLKGEMMDLQHGSLFLQ-TPKIVADKDY   83 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEE-------------ECSCHHHHHHHHHHHHHTGGGCC-CSEEEECSSG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEE-------------EEeccchhHHHHHHHhccccccC-CCeEEeccch
Confidence            456799999999999999999999885  6665             33554444322221  1111111 1122222 22


Q ss_pred             c-cccceEEeecccccccccccc-ccccceEEEecCCCCCCHHHHHHHHh---CCceeeccccccccCcchhh
Q psy1913         353 M-FDKVDILVPAAIEKVIRKSNA-DKVQAKIIVEAANGPLTPAAHAMLLK---KNVLIIPDIFANAGGVTVSY  420 (535)
Q Consensus       353 l-~~~~DILiPaA~~~~It~~na-~~i~AkiIvEgAN~p~T~eA~~iL~~---rGI~viPD~laNaGGVivSy  420 (535)
                      - ..+|||.|-+|.......++- +.++       .|.++-.+...-+.+   ++|++   ++.|-=-|++.+
T Consensus        84 ~~~~~adiVVitAg~~~~~g~tR~~l~~-------~N~~i~~~i~~~i~~~~p~aiii---vvtNPvDv~t~~  146 (160)
T d1i0za1          84 SVTANSKIVVVTAGVRQQEGESRLNLVQ-------RNVNVFKFIIPQIVKYSPDCIII---VVSNPVDILTYV  146 (160)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCGGGGHH-------HHHHHHHHHHHHHHHHCTTCEEE---ECSSSHHHHHHH
T ss_pred             hhcccccEEEEecCCccccCcchHHHHH-------HHHHHHHHHHHHHHhcCCCcEEE---EeCCchHHHHHH
Confidence            2 358998888887544333322 2221       233322222222333   45655   477776666644

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=90.87  E-value=0.21  Score=44.55  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|=|||-.|+.+.|.+.+. ..+||+|-|.
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            4799999999999999999875 6899998875

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.80  E-value=0.16  Score=43.65  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      -++|||.|.    +..|+.+++.|.+.|++|+.|        ||+.               +++.+.   ..+++ +=+.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pV--------nP~~---------------~~i~G~---~~~~sl~dlp   72 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPKY---------------EEVLGR---KCYPSVLDIP   72 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC---------------SEETTE---ECBSSGGGCS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEE--------CCcc---------------cccCCC---cccccccccC
Confidence            479999996    679999999999999999874        5554               223221   11222 1122


Q ss_pred             ccceEEeeccc----cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceee
Q psy1913         355 DKVDILVPAAI----EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       355 ~~~DILiPaA~----~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~vi  406 (535)
                      .++|+.+-|..    ..++.+  +....+|.|.= --+-.++++.+.++++|+.++
T Consensus        73 ~~iD~v~i~vp~~~~~~~~~e--~~~~g~k~v~~-~~G~~~ee~~~~a~~~gi~vi  125 (139)
T d2d59a1          73 DKIEVVDLFVKPKLTMEYVEQ--AIKKGAKVVWF-QYNTYNREASKKADEAGLIIV  125 (139)
T ss_dssp             SCCSEEEECSCHHHHHHHHHH--HHHHTCSEEEE-CTTCCCHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEEeCHHHHHHHHHH--HHHhCCCEEEE-eccccCHHHHHHHHHCCCEEE
Confidence            33455544432    222222  22233443332 122357899999999999765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.18  Score=45.15  Aligned_cols=40  Identities=20%  Similarity=0.072  Sum_probs=34.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYK  333 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~  333 (535)
                      ++|+|.|.|..|+..|..++..|+.|+.             .|.|.+.|.+..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l-------------~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVL-------------VDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEE-------------EECChHHHHHHH
Confidence            6999999999999999999999999987             667777665543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.52  E-value=0.16  Score=44.22  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|.+|.|+|. |.||..+++++...|++|++++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~   61 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR   61 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccc
Confidence            5899999995 999999999999999999997643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.32  Score=42.62  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=47.0

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCCCCCCCCHHHHHHHHHHc--C-CcccCCCCcccCC-
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPDKGTEINYKDLHTYKITK--G-TIKGYPGTKSAPT-  350 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~--g-~v~~~~~a~~i~~-  350 (535)
                      .++-.+|+|.|.|+||+++|..|...|.  .++-             -|++.+.+.......  . ...++  ...+.. 
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL-------------~D~~~~~a~g~alDl~~~~~~~~~--~~~~~~~   80 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELAL-------------VDADTDKLRGEALDLQHGSLFLST--PKIVFGK   80 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEE-------------ECSCHHHHHHHHHHHHHTTTTCSC--CEEEEES
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEE-------------EeCCchhhhccHHHHhCcchhcCC--CeEEecc
Confidence            3566789999999999999999998874  5554             335555443322211  1 11111  121211 


Q ss_pred             CCc-cccceEEeeccccccccc
Q psy1913         351 DIM-FDKVDILVPAAIEKVIRK  371 (535)
Q Consensus       351 ell-~~~~DILiPaA~~~~It~  371 (535)
                      +.- ..+|||+|-+|.......
T Consensus        81 d~~~~~~adivvitag~~~~~~  102 (159)
T d2ldxa1          81 DYNVSANSKLVIITAGARMVSG  102 (159)
T ss_dssp             SGGGGTTEEEEEECCSCCCCTT
T ss_pred             chhhhccccEEEEecccccCCC
Confidence            221 268999998886544443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.43  E-value=0.64  Score=40.72  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=67.1

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHHCCCe-EEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CCc
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRRGRAK-CLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DIM  353 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e~Gak-VVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--ell  353 (535)
                      +.+|.|+| .|.||..++++....|++ |++++++             .+...+..++.|.  +.+|........  ++-
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-------------~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~   97 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-------------QEKCLFLTSELGFDAAVNYKTGNVAEQLREAC   97 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-------------HHHHHHHHHHSCCSEEEETTSSCHHHHHHHHC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccch-------------HHHHhhhhhcccceEEeeccchhHHHHHHHHh
Confidence            47999999 599999999999999986 4444432             2344445544442  222222111111  122


Q ss_pred             cccceEEeecccccccccccccccc--ceEEEecC----------CCCCCHHHHHHHHhCCceee
Q psy1913         354 FDKVDILVPAAIEKVIRKSNADKVQ--AKIIVEAA----------NGPLTPAAHAMLLKKNVLII  406 (535)
Q Consensus       354 ~~~~DILiPaA~~~~It~~na~~i~--AkiIvEgA----------N~p~T~eA~~iL~~rGI~vi  406 (535)
                      ...+|+++.|..+.. ...+.+.++  .++|.=|+          ..+..+....++..|++.+-
T Consensus        98 ~~GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~  161 (187)
T d1vj1a2          98 PGGVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRE  161 (187)
T ss_dssp             TTCEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEE
T ss_pred             ccCceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEE
Confidence            346999999997543 344555553  47776553          22344556667888888753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.37  E-value=0.16  Score=47.80  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccC----CCCcccCC-
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGY----PGTKSAPT-  350 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~----~~a~~i~~-  350 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.|.+..++.+. +..+    ...+.+.. 
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~   69 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAV-------------LDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQA   69 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHcCCCeeEEecccccHHHHHHH
Confidence            68999999995 78999999999999999998             45778888877766542 2111    11111111 


Q ss_pred             --CCcc--ccceEEeeccc
Q psy1913         351 --DIMF--DKVDILVPAAI  365 (535)
Q Consensus       351 --ell~--~~~DILiPaA~  365 (535)
                        ++.+  -..|+||.+|.
T Consensus        70 ~~~~~~~~g~idilvnnAG   88 (276)
T d1bdba_          70 ASRCVARFGKIDTLIPNAG   88 (276)
T ss_dssp             HHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHhCCccccccccc
Confidence              1111  37899999985

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.11  Score=47.70  Aligned_cols=33  Identities=12%  Similarity=0.224  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      +|+||++.|.|. +..|..+|+.|++.|++|+.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~   35 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLL   35 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            589999999995 569999999999999998773

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.27  E-value=0.14  Score=45.15  Aligned_cols=43  Identities=19%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      .|.+|+|+|.|.||..++..+...|+ +||+             .|.+.++|...++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~-------------vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIG-------------IDLNKDKFEKAMA   72 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE-------------ECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEE-------------ecCcHHHHHHHHh
Confidence            58999999999999999999999995 7888             5566677654444

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=90.17  E-value=0.33  Score=45.01  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|+||+|.|.|.. -+|+.+|+.|++.|++|+.+++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999965 59999999999999999998765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.15  E-value=0.16  Score=47.51  Aligned_cols=46  Identities=20%  Similarity=0.134  Sum_probs=37.3

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|+||++.|.|. +.+|..+|+.|++.|++|+.             +|.+.+.|.+..++
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~-------------~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHT-------------CARNEYELNECLSK   51 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            479999999996 56999999999999999988             44666777665543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.12  E-value=0.15  Score=47.35  Aligned_cols=76  Identities=21%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC-cccCC----CCcccCC-
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT-IKGYP----GTKSAPT-  350 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~-v~~~~----~a~~i~~-  350 (535)
                      |+||++.|.|. +-+|+.+|+.|++.|++|+.             +|.+.+.+.+..++.+. +..+.    ..+.+.. 
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~   69 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAI-------------ADINLEAARATAAEIGPAACAIALDVTDQASIDRC   69 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEE-------------EESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHH
Confidence            68999999996 77999999999999999988             55888888888776542 21111    1111111 


Q ss_pred             --CCcc--ccceEEeecccc
Q psy1913         351 --DIMF--DKVDILVPAAIE  366 (535)
Q Consensus       351 --ell~--~~~DILiPaA~~  366 (535)
                        ++.+  -..|+||-+|..
T Consensus        70 ~~~~~~~~g~iDilVnnAg~   89 (256)
T d1k2wa_          70 VAELLDRWGSIDILVNNAAL   89 (256)
T ss_dssp             HHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhCCccEEEeeccc
Confidence              1111  378999999863

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.09  E-value=0.19  Score=46.68  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+++.+..++.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~-------------~~r~~~~~~~~~~~~~   51 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVF-------------GDILDEEGKAMAAELA   51 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHTG
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHhh
Confidence            79999999996 66999999999999999988             5577888888777643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.06  E-value=0.23  Score=43.45  Aligned_cols=33  Identities=30%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .|.+|+|+|.|.||..++..+...|++.|.++|
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d   59 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG   59 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccC
Confidence            589999999999999999999999985444443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.15  Score=47.52  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      |+||++.|.|. +-.|+.+|+.|++.|++|+.             ++.+.+.|.+..++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil-------------~~r~~~~l~~~~~~   57 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVV-------------TARSKETLQKVVSH   57 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            79999999996 45999999999999999998             44788888776654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.22  Score=46.22  Aligned_cols=75  Identities=15%  Similarity=0.100  Sum_probs=53.0

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCC----CCcccCC--
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYP----GTKSAPT--  350 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~----~a~~i~~--  350 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.+.+..++.+....+.    ..+.+..  
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   70 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVI-------------CDKDESGGRALEQELPGAVFILCDVTQEDDVKTLV   70 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHH
Confidence            78999999995 78999999999999999988             5578888888877755432221    1111111  


Q ss_pred             -CCcc--ccceEEeeccc
Q psy1913         351 -DIMF--DKVDILVPAAI  365 (535)
Q Consensus       351 -ell~--~~~DILiPaA~  365 (535)
                       ++.+  -..|+||-+|.
T Consensus        71 ~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          71 SETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHSCCCEEEECCC
T ss_pred             HHHHHhcCCCCEEEeccc
Confidence             1121  36899999885

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=89.78  E-value=0.15  Score=45.36  Aligned_cols=41  Identities=22%  Similarity=0.093  Sum_probs=34.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      ++|+|.|.|.+|+..|..++..|.+|+.             .|.|.+.|.+..+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l-------------~D~~~~~l~~~~~   45 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILM-------------KDINEHGIEQGLA   45 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEE-------------ECSSHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEE-------------EECCHHHHhhhhh
Confidence            5799999999999999999999999987             6677777766443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.72  E-value=0.23  Score=46.21  Aligned_cols=45  Identities=20%  Similarity=0.328  Sum_probs=36.7

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      |+||++.|.|- +..|+.+|+.|++.|++|+.             +|.+.+.|.+..++
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~~   48 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIAL-------------LDMNREALEKAEAS   48 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            68999999996 56999999999999999887             45777766665543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.65  E-value=0.23  Score=44.40  Aligned_cols=76  Identities=12%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcc---c--CCCCc--
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKS---A--PTDIM--  353 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~---i--~~ell--  353 (535)
                      ++|+|.|.|+.|..+|..|.+.|.+|.-..             .|.+.+.+..+.+....-+|+.+.   +  +.++-  
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~-------------r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWH-------------MNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKA   74 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEEC-------------SCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEE-------------ecHHHHHHHhhcccccccccccccccccccchhhhhc
Confidence            579999999999999999999998887522             566666666554433322233221   1  11211  


Q ss_pred             cccceEEeeccccccc
Q psy1913         354 FDKVDILVPAAIEKVI  369 (535)
Q Consensus       354 ~~~~DILiPaA~~~~I  369 (535)
                      -.+||+++-|.....+
T Consensus        75 ~~~ad~iiiavPs~~~   90 (189)
T d1n1ea2          75 YNGAEIILFVIPTQFL   90 (189)
T ss_dssp             HTTCSCEEECSCHHHH
T ss_pred             cCCCCEEEEcCcHHHH
Confidence            2378998887754433

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.51  E-value=0.2  Score=46.53  Aligned_cols=47  Identities=21%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      |+||++.|.|. +.+|..+|+.|++.|++|+.             +|.+.+.+.+..++.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~~~~~~~~~~~~~~~   51 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAF-------------SDINEAAGQQLAAELG   51 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-------------ECSCHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHhC
Confidence            78999999985 56999999999999999987             5688888888777654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.47  E-value=0.17  Score=45.73  Aligned_cols=39  Identities=23%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             CCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         273 GLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       273 g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++.+.-..++|+|+|.|..|..+|..|+++|.+|+ |-|.
T Consensus        23 ~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~-vlE~   61 (370)
T d2iida1          23 GLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVT-VLEA   61 (370)
T ss_dssp             CSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEE-EECS
T ss_pred             CCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEE-EEeC
Confidence            34333456899999999999999999999999976 4554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=89.42  E-value=0.31  Score=42.02  Aligned_cols=28  Identities=21%  Similarity=0.244  Sum_probs=23.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVa  308 (535)
                      ++|+|.|.|+||+.+|..|...|.  .++-
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL   31 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVF   31 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEE
Confidence            689999999999999999988773  5554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.34  E-value=0.19  Score=44.19  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .|.+|+|+|.|.||..++..+...|++.|.++|
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d   60 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID   60 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeec
Confidence            588999999999999999999999996555554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.17  E-value=0.25  Score=46.00  Aligned_cols=47  Identities=23%  Similarity=0.265  Sum_probs=39.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      -|+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.+.+..++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i-------------~~r~~~~~~~~~~~l   50 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVI-------------ADIADDHGQKVCNNI   50 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHh
Confidence            378999999994 66999999999999999987             557778887776654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.23  Score=46.11  Aligned_cols=45  Identities=16%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      |+||++.|.|. +.+|..+|+.|++.|++||.             ++.|.+.+.+..++
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~-------------~~r~~~~l~~~~~~   53 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVG-------------CARTVGNIEELAAE   53 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            78999999995 67999999999999999988             44777777665543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.89  E-value=0.44  Score=40.89  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=64.5

Q ss_pred             cEEEEEccccHHHH-HHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--CCcccc
Q psy1913         281 KTYIVQGFGNVGFH-AARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--DIMFDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~-~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--ell~~~  356 (535)
                      .||+|.|+|+.|+. .+..|.+. +..++.             +|.|.+.+.+..++.+...      .+++  ++++.+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~-------------~d~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~   62 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVL-------------CTRNPKVLGTLATRYRVSA------TCTDYRDVLQYG   62 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEE-------------ECSCHHHHHHHHHHTTCCC------CCSSTTGGGGGC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEE-------------EECCHHHHHHHHHhccccc------ccccHHHhcccc
Confidence            58999999999965 45666665 456553             4467788888777654221      2233  677778


Q ss_pred             ceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCcee
Q psy1913         357 VDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLI  405 (535)
Q Consensus       357 ~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~v  405 (535)
                      +|+++-|+. +..+.+.+...   ...+++|===.....++.++   ..++|+.+
T Consensus        63 iD~V~I~tp-~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          63 VDAVMIHAA-TDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             CSEEEECSC-GGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cceeccccc-ccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            899887764 44455544332   35688884211222455544   46678765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.87  E-value=0.13  Score=47.78  Aligned_cols=34  Identities=29%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+||++.|.|. +.+|..+|+.|++.|++|+.+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~   40 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY   40 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            579999999996 4599999999999999987743

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=88.87  E-value=0.14  Score=43.40  Aligned_cols=30  Identities=23%  Similarity=0.404  Sum_probs=27.6

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      .=++|+|+| .|++|+++|+.|.+.|+.|.+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~   38 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISI   38 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEe
Confidence            446999999 999999999999999999877

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.2  Score=43.06  Aligned_cols=106  Identities=8%  Similarity=-0.017  Sum_probs=58.9

Q ss_pred             cEEEEEccccHHHH-HHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccc
Q psy1913         281 KTYIVQGFGNVGFH-AARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKV  357 (535)
Q Consensus       281 ~~VaIQGfGnVG~~-~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~  357 (535)
                      .+|+|.|+|++|.. .+..|.. .+.+|++|+|.+            .+...+..++.+       ....+. +.+..++
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~------------~~~~~~~~~~~~-------~~~~~~~~~l~~~~   62 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT------------RAKALPICESWR-------IPYADSLSSLAASC   62 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS------------CTTHHHHHHHHT-------CCBCSSHHHHHTTC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEech------------hHhhhhhhhccc-------ccccccchhhhhhc
Confidence            58999999999974 5666665 488999988753            122333444432       222333 2233478


Q ss_pred             eEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceee
Q psy1913         358 DILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLII  406 (535)
Q Consensus       358 DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~vi  406 (535)
                      |+++-|+. +..+.+-+...   ...+++|===.....|+.++   ..++|+.+.
T Consensus        63 D~V~I~tp-~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~  116 (164)
T d1tlta1          63 DAVFVHSS-TASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLM  116 (164)
T ss_dssp             SEEEECSC-TTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             cccccccc-chhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEE
Confidence            98887764 33343333322   34788883111112455544   345565443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.70  E-value=0.18  Score=43.35  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .|.+|+|+|.|.||..+++++...|+++|.++|+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            5899999999999999999999999876666554

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.69  E-value=0.27  Score=44.91  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      +|+||++.|.|. +.+|+.+|+.|++.|++|+.
T Consensus         1 gLkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~   33 (234)
T d1o5ia_           1 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTI   33 (234)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence            368999999996 66999999999999999887

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.58  E-value=0.24  Score=42.25  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=22.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCLA  308 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVVa  308 (535)
                      ++|+|.|.|+||+.+|..|...+.  .++-
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L   30 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVL   30 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEE
Confidence            479999999999999998887663  5554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.21  Score=46.42  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.+.+..+
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~~~~~~~   53 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVV-------------SDINADAANHVVD   53 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            68999999985 67999999999999999988             4466776666544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.50  E-value=0.35  Score=41.39  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCC--eEE
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRA--KCL  307 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~Ga--kVV  307 (535)
                      .+|+|.|.|+||+.+|..|..++.  .|+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~   30 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELV   30 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEE
Confidence            479999999999999999998875  444

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=88.50  E-value=1.3  Score=38.94  Aligned_cols=48  Identities=17%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIK  340 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~  340 (535)
                      .+|+|=|||-+|+.+.|.+.+. ..+||+|.|.           .|++.+. |.-+.-|+-
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~-----------~~~~~~a-yLl~yDSvh   50 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-----------LDADYMA-YMLKYDSTH   50 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS-----------SCHHHHH-HHHHCCTTT
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC-----------CCHHHHh-hhheecCCC
Confidence            4899999999999999999886 5899998874           4555543 554554443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=88.47  E-value=0.14  Score=44.86  Aligned_cols=92  Identities=14%  Similarity=0.087  Sum_probs=54.4

Q ss_pred             CCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CC-
Q psy1913         279 ENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DI-  352 (535)
Q Consensus       279 ~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--el-  352 (535)
                      +|.+|.|+|. |.||..++++....|++|++++.             +.+.+.. .++.|.  +..+........  +. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~-------------~~~~~~~-~~~~Ga~~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG-------------SDEKIAY-LKQIGFDAAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES-------------SHHHHHH-HHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC-------------CHHHHHH-HHhhhhhhhcccccccHHHHHHHHh
Confidence            5899999998 77999999999999999999763             2333333 333331  111111111110  11 


Q ss_pred             ccccceEEeecccccccccccccccc--ceEEEec
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKVQ--AKIIVEA  385 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i~--AkiIvEg  385 (535)
                      -...+|+++-|..+ ....+....++  .++|.=|
T Consensus        95 ~~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 SPDGYDCYFDNVGG-EFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CTTCEEEEEESSCH-HHHHHHGGGEEEEEEEEECC
T ss_pred             hcCCCceeEEecCc-hhhhhhhhhccCCCeEEeec
Confidence            12468999998864 33344455553  4666654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=88.42  E-value=0.24  Score=44.21  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=29.3

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ...||+|+|.|..|..+|..|.+.|.+|+ |-|.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~-v~Er   35 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVD-VYER   35 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEE-EEeC
Confidence            46799999999999999999999999977 5564

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.39  E-value=0.22  Score=46.63  Aligned_cols=44  Identities=27%  Similarity=0.299  Sum_probs=36.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.|.+.++
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~   46 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTI-------------TGRNEDRLEETKQ   46 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHH
Confidence            68999999995 56999999999999999988             4577777766554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.32  E-value=0.21  Score=43.99  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=27.4

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      -++|+|+|.|-+|..+|..|+++|.+|+.|
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vi   35 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHIL   35 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEE
Confidence            468999999999999999999999997654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.16  E-value=1.5  Score=38.62  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~  312 (535)
                      .||+|=|||-.|+.+.|.+.+.   ...||+|-|.
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            4899999999999999998863   5899999874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.16  E-value=0.31  Score=41.29  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             CCCcEEEEEccccHHHHHHHHHHHCCCe
Q psy1913         278 MENKTYIVQGFGNVGFHAARYFRRGRAK  305 (535)
Q Consensus       278 l~g~~VaIQGfGnVG~~~A~~L~e~Gak  305 (535)
                      ..|++|+|+|.|++|.-+|+.+.+.|++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            3689999999999999999999999975

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=88.12  E-value=0.35  Score=44.41  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=39.3

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      |+||++.|.|. +..|..+|+.|.+.|++|+.             ++.+.+.+.+..++.+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~-------------~~r~~~~~~~~~~~~~   50 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVA-------------VDREERLLAEAVAALE   50 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHcC
Confidence            78999999986 45999999999999999988             4477788877776654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.07  E-value=0.18  Score=46.60  Aligned_cols=32  Identities=19%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaV  309 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~   35 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIA   35 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            68999999996 569999999999999998863

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.32  Score=46.29  Aligned_cols=46  Identities=11%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      -|+||++.|.|. +.+|..+|+.|++.|++|+.             +|.+.+.+.+..++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi-------------~~r~~~~l~~~~~e   55 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVI-------------ASRKLERLKSAADE   55 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            389999999995 56999999999999999988             45777777665543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.02  E-value=0.22  Score=45.57  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=28.4

Q ss_pred             CCCcEEEEEcc-cc--HHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGF-GN--VGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGf-Gn--VG~~~A~~L~e~GakVVa  308 (535)
                      |+||++.|.|. |+  .|+.+|+.|++.|++|+.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil   37 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVL   37 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEE
Confidence            78999999996 65  999999999999999886

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.28  Score=43.27  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      ..++|+|.| -|.+|+++++.|++.|++|++++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~   34 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLV   34 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence            457999999 69999999999999999999986

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.98  E-value=0.39  Score=43.61  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             CCcEEEEEccccHHH-HHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCc--ccCC--CC
Q psy1913         279 ENKTYIVQGFGNVGF-HAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTK--SAPT--DI  352 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~-~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~--~i~~--el  352 (535)
                      +-.+|+|+|+|+.|. +.+..|.. .+.+|+||+|            .|.+.+....++.+    ++...  .+++  ++
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d------------~~~~~a~~~~~~~~----i~~~~~~~~~d~~el   95 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS------------GNAEKAKIVAAEYG----VDPRKIYDYSNFDKI   95 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC------------SCHHHHHHHHHHTT----CCGGGEECSSSGGGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEec------------CCHHHHHHHHHhhc----cccccccccCchhhh
Confidence            457999999999996 56666655 4899999875            66777777777654    11111  1233  56


Q ss_pred             cc-ccceEEeeccccccccccccccc---cceEEEecCCCCCCHHHHHH---HHhCCceee
Q psy1913         353 MF-DKVDILVPAAIEKVIRKSNADKV---QAKIIVEAANGPLTPAAHAM---LLKKNVLII  406 (535)
Q Consensus       353 l~-~~~DILiPaA~~~~It~~na~~i---~AkiIvEgAN~p~T~eA~~i---L~~rGI~vi  406 (535)
                      ++ .++|+++-|+.. ..+.+-+...   .-.++||=-=.....++.++   -+++|+.+.
T Consensus        96 l~~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~  155 (221)
T d1h6da1          96 AKDPKIDAVYIILPN-SLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLM  155 (221)
T ss_dssp             GGCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred             cccccceeeeeccch-hhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEE
Confidence            63 578988877643 3443332222   34788885211122345554   345566553

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.76  E-value=0.11  Score=47.86  Aligned_cols=35  Identities=20%  Similarity=0.536  Sum_probs=31.5

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      +.++|+|.|.|-+|.++|..|...|.+-+.+.|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            56899999999999999999999999888888753

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.61  E-value=2.1  Score=37.65  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHC---CCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG---RAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKG  341 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~---GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~  341 (535)
                      .||+|=|||-.|+.+.|.+.+.   ...||+|-|.           -|++.+ .|.-+..|+-+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~-----------~~~~~~-ayLlkyDSvhG   52 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-----------GGVKQA-SHLLKYDSILG   52 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT-----------TCHHHH-HHHHHCCTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC-----------CCHHHH-HHHHhcCcccc
Confidence            3799999999999999988764   3689998764           244444 45555555443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.14  Score=47.44  Aligned_cols=44  Identities=32%  Similarity=0.408  Sum_probs=36.6

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHH
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKI  334 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~  334 (535)
                      |+||++.|.| .+.+|+.+|+.|++.|++|+.             +|.+.+.|.+..+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~-------------~~r~~~~l~~~~~   48 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIA-------------TDINESKLQELEK   48 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHGGGGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EeCCHHHHHHHHh
Confidence            7899999988 588999999999999999998             4477777665444

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.58  E-value=1.7  Score=38.29  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             cEEEEEccccHHHHHHHHHHHC----CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG----RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~----GakVVaVsD~  312 (535)
                      .+|+|=|||-.|+.+.|.+.+.    ...||+|.|.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            4799999999999999999864    4689998875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.28  E-value=0.61  Score=41.38  Aligned_cols=54  Identities=19%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             CchHHHHHHHHHHHHhcHHHHHHhCC-------CCCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         249 SATGRGVFTAAEILVNNEEYMCEIGL-------EPCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       249 ~aTg~GV~~~i~~~l~~~~~~~~~g~-------~~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      +.|.+||..-++          .+++       ..+++||+|+|.|=+ .||+-+|.+|.++|+.|. +++++
T Consensus         1 PcTp~gv~~LL~----------~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt-~~~~~   62 (171)
T d1edza1           1 PCTPLAIVKILE----------FLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVN   62 (171)
T ss_dssp             CHHHHHHHHHHH----------HTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSS
T ss_pred             CCcHHHHHHHHH----------HcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEE-Eeccc
Confidence            357788766555          3333       126899999999965 579999999999999875 56554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=87.26  E-value=0.35  Score=43.07  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             CCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         275 EPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       275 ~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .+..++++|+|+|.|..|..+|..|.++|.+|+- .|.
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl-~E~   74 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTL-FDA   74 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEE-EES
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEE-Eec
Confidence            3445789999999999999999999999999865 454

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.15  E-value=0.079  Score=44.58  Aligned_cols=57  Identities=23%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             CCCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEec
Q psy1913         243 GIRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       243 Gs~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      |++|..+..|+||.|++..  +        +  +-.+|++|+|.|.||-+...|.+|.+...+|.-|.-
T Consensus         5 ~ipge~~~~gkGV~yca~c--D--------~--~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r   61 (126)
T d1fl2a2           5 NVPGEDQYRTKGVTYCPHC--D--------G--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF   61 (126)
T ss_dssp             CCTTTTTTBTTTEESCHHH--H--------G--GGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECS
T ss_pred             CCCCHHHhcCCCEEEEEec--C--------h--hhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEec
Confidence            5567788899999887651  1        1  125799999999999999999999998777776643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=87.11  E-value=0.25  Score=41.20  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC--eEEEEecCCceEeCC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA--KCLAIVEHDTAIVPD  319 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga--kVVaVsD~~G~iynp  319 (535)
                      .|+||+|+|.|.+|..+|..|.+.+.  +|+-| |.+-..+.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtli-e~~~~~~~~   42 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLI-EPNTDYYTC   42 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEE-CSCSCEECS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEE-ECCCccccc
Confidence            48999999999999999999998774  66654 554444443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=86.87  E-value=0.16  Score=42.99  Aligned_cols=84  Identities=12%  Similarity=0.106  Sum_probs=48.2

Q ss_pred             EEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCccccceEEe
Q psy1913         283 YIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMFDKVDILV  361 (535)
Q Consensus       283 VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~~~~DILi  361 (535)
                      |.++|.||+|+++++.|.+ +..++.|.+            -+.+.+.++.++.+.       ...+. ++. ..|||++
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~------------R~~~~~~~l~~~~~~-------~~~~~~~~~-~~~DiVi   60 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILS------------RSIDRARNLAEVYGG-------KAATLEKHP-ELNGVVF   60 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEEC------------SSHHHHHHHHHHTCC-------CCCSSCCCC-C---CEE
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEe------------CChhhhcchhhcccc-------cccchhhhh-ccCcEEE
Confidence            4689999999999998865 444444332            456777777776532       22233 433 5789999


Q ss_pred             eccccccccccccccc--cceEEEecCCC
Q psy1913         362 PAAIEKVIRKSNADKV--QAKIIVEAANG  388 (535)
Q Consensus       362 PaA~~~~It~~na~~i--~AkiIvEgAN~  388 (535)
                      -|...+.|.+ -+..+  +-++|+.-+++
T Consensus        61 l~v~d~~i~~-v~~~l~~~~~ivi~~s~~   88 (153)
T d2i76a2          61 VIVPDRYIKT-VANHLNLGDAVLVHCSGF   88 (153)
T ss_dssp             ECSCTTTHHH-HHTTTCCSSCCEEECCSS
T ss_pred             EeccchhhhH-HHhhhcccceeeeecccc
Confidence            9987666543 33334  34666665543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.36  Score=42.59  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVa  308 (535)
                      +..+|+|+|.|--|..+|..|.+.|.+|+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~V   33 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTL   33 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            457899999999999999999999999764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=0.38  Score=41.48  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      +|.+|.|.| .|.||..+++++...|++|+++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~   61 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG   61 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccc
Confidence            588999999 599999999999999999999663

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.61  E-value=0.36  Score=44.64  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=37.1

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      +|++|.+.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.+.+..++
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~-------------~~r~~~~l~~~~~~   53 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVIC-------------ISRTQKSCDSVVDE   53 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEE-------------EESSHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-------------EECCHHHHHHHHHH
Confidence            478999999985 67999999999999999987             44666777665543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.56  E-value=2.3  Score=37.18  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             EEEEEccccHHHHHHHHHHHC-CCeEEEEecCC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRG-RAKCLAIVEHD  313 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~~  313 (535)
                      ||+|=|||-.|+.+.|.+.+. ...||+|-|..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~   34 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPF   34 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTT
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCC
Confidence            799999999999999999874 78999988754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.47  E-value=0.42  Score=43.80  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEccc---cHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGFG---NVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGfG---nVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|+||++.|.|.+   -.|+.+|+.|++.|++|+ +++.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~-i~~~   42 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVA-LSYQ   42 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence            5899999999974   499999999999999986 4443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.34  E-value=0.35  Score=44.89  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHH
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKIT  335 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~  335 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.|.+..++
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~l~~~~~~   48 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTI-------------TGRHAERLEETRQQ   48 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHH
Confidence            68999999884 78999999999999999987             45777777666543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=86.23  E-value=0.76  Score=41.85  Aligned_cols=103  Identities=10%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             CCcEEEEEccccHHHHHHH----HHHH--CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC--
Q psy1913         279 ENKTYIVQGFGNVGFHAAR----YFRR--GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT--  350 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~----~L~e--~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~--  350 (535)
                      +-.||+|+|+|+.|.++++    .+.+  .+++||||+|            .|.+...+..++.+    .+....+++  
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d------------~~~~~~~~~~~~~~----~~~~~~~~~~~   78 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYN------------PTLKSSLQTIEQLQ----LKHATGFDSLE   78 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEEC------------SCHHHHHHHHHHTT----CTTCEEESCHH
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEc------------CCHHHHHHHHHhcc----cccceeecchh
Confidence            4579999999996654433    3333  4789999875            55666666666543    223333454  


Q ss_pred             CCc-cccceEEeecccccccccccccc-cc--------ceEEEecCCCCCCHHHHHHH
Q psy1913         351 DIM-FDKVDILVPAAIEKVIRKSNADK-VQ--------AKIIVEAANGPLTPAAHAML  398 (535)
Q Consensus       351 ell-~~~~DILiPaA~~~~It~~na~~-i~--------AkiIvEgAN~p~T~eA~~iL  398 (535)
                      +++ ..+.|+++-|+. +..+.+.+.. ++        ..++||=-=.....|+++++
T Consensus        79 ~l~~~~~iD~V~i~tp-~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~  135 (237)
T d2nvwa1          79 SFAQYKDIDMIVVSVK-VPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY  135 (237)
T ss_dssp             HHHHCTTCSEEEECSC-HHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH
T ss_pred             hcccccccceeeccCC-CcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHH
Confidence            555 468899998885 3334443322 22        36888853333335677654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=86.20  E-value=0.24  Score=43.51  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=27.4

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++|+|+|.|..|..+|..|++.|.+|+ |.|.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~-vlE~   31 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAV-LLES   31 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEE-EECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEE-EEec
Confidence            479999999999999999999999976 5554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=86.01  E-value=0.45  Score=38.46  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .+++|+|.|.|.+|.-+|..|.+.|.+|..|--.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~   54 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT   54 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence            5799999999999999999999999988765543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.41  Score=38.99  Aligned_cols=37  Identities=22%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEe
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIV  317 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy  317 (535)
                      .++|+|.|.|.+|..+|..|++.|.+|.-| +....+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlv-e~~~~~l   57 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLF-EMFDAPL   57 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEE-CSSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEE-eecchhh
Confidence            379999999999999999999999997554 5544443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=85.64  E-value=0.4  Score=44.30  Aligned_cols=46  Identities=20%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHc
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITK  336 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~  336 (535)
                      |+||++.|.|. +.+|+.+|+.|++.|++|+.             +|.+.+.+.+..++.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~-------------~~r~~~~~~~~~~~~   50 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMI-------------TGRHSDVGEKAAKSV   50 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-------------EESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE-------------EECCHHHHHHHHHHh
Confidence            78999999994 66999999999999999887             447777777766553

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=85.42  E-value=0.51  Score=41.22  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++.+|.|+| .|.||..++++....|++||+++-+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s   57 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN   57 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC
Confidence            577899999 5999999999999999999997743

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.30  E-value=0.094  Score=43.57  Aligned_cols=101  Identities=10%  Similarity=0.067  Sum_probs=55.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCCCCc----ccc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPTDIM----FDK  356 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~ell----~~~  356 (535)
                      |.|+|.|||.+|+.+++.|...+  |+.|-             .|.+....... .|--.-+  +...+++.|    -.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~-------------~d~~~~~~~~~-~~~~~i~--Gd~~~~~~L~~a~i~~   62 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLA-------------EDENVRKKVLR-SGANFVH--GDPTRVSDLEKANVRG   62 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEE-------------SCTTHHHHHHH-TTCEEEE--SCTTSHHHHHHTTCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEE-------------cchHHHHHHHh-cCccccc--cccCCHHHHHHhhhhc
Confidence            46899999999999999996544  44421             34444444433 2210000  111111222    247


Q ss_pred             ceEEeecccccccccc---ccccc--cceEEEecCCCCCCHHHHHHHHhCCc
Q psy1913         357 VDILVPAAIEKVIRKS---NADKV--QAKIIVEAANGPLTPAAHAMLLKKNV  403 (535)
Q Consensus       357 ~DILiPaA~~~~It~~---na~~i--~AkiIvEgAN~p~T~eA~~iL~~rGI  403 (535)
                      |+.+|-+......|-.   .+.++  ..++|+..-    +++-.+.|++-|+
T Consensus        63 A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~G~  110 (129)
T d2fy8a1          63 ARAVIVNLESDSETIHCILGIRKIDESVRIIAEAE----RYENIEQLRMAGA  110 (129)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECS----SGGGHHHHHHHHC
T ss_pred             CcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEc----CHHHHHHHHHCCC
Confidence            8888887754333322   22233  357777764    3455566777675

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.28  E-value=0.4  Score=43.97  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             CCCCCcEEEEEccc-cHHHHHHHHHHHCCCeEEEEe
Q psy1913         276 PCMENKTYIVQGFG-NVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       276 ~~l~g~~VaIQGfG-nVG~~~A~~L~e~GakVVaVs  310 (535)
                      |+|+||++.|.|.+ .+|+.+|+.|.+.|++|+.+.
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~   38 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTH   38 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            57999999999964 699999999999999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.23  E-value=0.44  Score=38.57  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHH
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYK  327 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~  327 (535)
                      .++|+|+|.|.+|-.+|..|.+.|.+|.-|- ....+.  .+  +|.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve-~~~~il--~~--~d~~   64 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILE-GAGEIL--SG--FEKQ   64 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEE-SSSSSS--TT--SCHH
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEE-ecceec--cc--ccch
Confidence            4799999999999999999999999977654 433333  24  6654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.56  Score=41.32  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++.+|.|+| .|.||..+.++....|++||+++-+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~   65 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecc
Confidence            455788876 5999999999999999999997743

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.62  Score=39.98  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=59.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC--CCc
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT--DIM  353 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~--ell  353 (535)
                      .|.+|.|.| .|.||..++++....|++|+++.             .+.+++...++ .|.  +-++......+.  ++-
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~-------------~s~~k~~~~~~-lGa~~vi~~~~~d~~~~v~~~t   93 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV-------------GTAQKAQSALK-AGAWQVINYREEDLVERLKEIT   93 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEE-------------SSHHHHHHHHH-HTCSEEEETTTSCHHHHHHHHT
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecc-------------cchHHHHHHHh-cCCeEEEECCCCCHHHHHHHHh
Confidence            488999995 55599999999999999999944             55566544443 331  112211111111  111


Q ss_pred             -cccceEEeeccccccccccccccc--cceEEE-ecCCCCCCHHHHHHHHhCC
Q psy1913         354 -FDKVDILVPAAIEKVIRKSNADKV--QAKIIV-EAANGPLTPAAHAMLLKKN  402 (535)
Q Consensus       354 -~~~~DILiPaA~~~~It~~na~~i--~AkiIv-EgAN~p~T~eA~~iL~~rG  402 (535)
                       ...+|+++.|..+.. -......+  ..+++. .....+..+.....+..++
T Consensus        94 ~g~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  145 (179)
T d1qora2          94 GGKKVRVVYDSVGRDT-WERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKG  145 (179)
T ss_dssp             TTCCEEEEEECSCGGG-HHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTT
T ss_pred             CCCCeEEEEeCccHHH-HHHHHHHHhcCCeeeecccccCCccccchhhhhccc
Confidence             346788888875443 23333333  245544 3344444333223344444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.42  E-value=0.42  Score=39.40  Aligned_cols=53  Identities=19%  Similarity=0.302  Sum_probs=37.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHH---HHHHHHHcC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKD---LHTYKITKG  337 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~---L~~~~~~~g  337 (535)
                      .++++|+|.|.+|--+|..|.+.|.+|.-| +....+. | +  +|.+.   |.+..++.|
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi-~~~~~~l-~-~--~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVV-EFASEIV-P-T--MDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEE-CSSSSSS-T-T--SCHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEE-EEccccC-c-h--hhhcchhhhhhhhhccc
Confidence            479999999999999999999999998754 4444443 2 4  66543   333444444

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.23  Score=43.12  Aligned_cols=31  Identities=26%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      ++++|+|+|-|+.|..+|.++.+.|.+|+-|
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~ii   34 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLI   34 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            5689999999999999999999999998777

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=84.32  E-value=0.36  Score=40.77  Aligned_cols=31  Identities=32%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             EEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         282 TYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       282 ~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +|+|+|.|..|..+|..|+++|.+=|.|-|.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~   32 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEA   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEEC
Confidence            6999999999999999999999753346664

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.29  E-value=0.82  Score=35.28  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++.+|.|.| .|.||..+.+++...|++|++++-+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s   65 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGR   65 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECC
Confidence            688999976 5999999999999999999998743

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.24  E-value=0.55  Score=40.39  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=29.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|.+|.|.| .|.||..+++++...|++|++++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~   57 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTA   57 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeee
Confidence            488999988 59999999999999999999966

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.15  E-value=0.59  Score=41.24  Aligned_cols=110  Identities=14%  Similarity=0.170  Sum_probs=61.8

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCC--cccCCCCcccCC---CC
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGT--IKGYPGTKSAPT---DI  352 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~--v~~~~~a~~i~~---el  352 (535)
                      +|.+|.|+| .|.||..+.++....|++|++++-++      +-    .    ++.++.|.  +.+|...  ...   .+
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~------~k----~----~~~~~lGa~~vi~~~~~--~~~~~~~~   94 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA------AE----H----DYLRVLGAKEVLAREDV--MAERIRPL   94 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT------TC----H----HHHHHTTCSEEEECC-----------C
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch------HH----H----HHHHhcccceeeecchh--HHHHHHHh
Confidence            689999999 69999999999999999999977432      11    1    22223331  1222211  111   12


Q ss_pred             ccccceEEeeccccccccccccccc--cceEEEecCC-CC-CCHHHHHHHHhCCceee
Q psy1913         353 MFDKVDILVPAAIEKVIRKSNADKV--QAKIIVEAAN-GP-LTPAAHAMLLKKNVLII  406 (535)
Q Consensus       353 l~~~~DILiPaA~~~~It~~na~~i--~AkiIvEgAN-~p-~T~eA~~iL~~rGI~vi  406 (535)
                      -...+|+.+.+..+. .-......+  ..++|+-|.- ++ .+.....+ .-|++.++
T Consensus        95 ~~~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~-~~k~~~i~  150 (176)
T d1xa0a2          95 DKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPF-ILRGVSLL  150 (176)
T ss_dssp             CSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHH-HHTTCEEE
T ss_pred             hccCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHHH-HHCCcEEE
Confidence            245788888876544 333444444  3577666654 33 23333333 34556543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=84.12  E-value=0.52  Score=44.62  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|++|.|.| .|-+|+++++.|.++|++|++..
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~v   42 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA   42 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            689999999 48899999999999999999854

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.81  E-value=0.5  Score=43.56  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=29.5

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +|+||++.|.|. +.+|..+|+.|++.|++|+...
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~   37 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNY   37 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEc
Confidence            489999999985 5699999999999999998644

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.53  E-value=0.44  Score=40.24  Aligned_cols=32  Identities=16%  Similarity=0.122  Sum_probs=27.5

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      --|+|+|.|..|..+|..|+++|.+| .|.|..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V-~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKV-LHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCE-EEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCE-EEEcCC
Confidence            45899999999999999999999995 556653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.35  E-value=0.76  Score=41.35  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=23.5

Q ss_pred             CCCCCCcEEEEEccccHHHHHHHHHH
Q psy1913         275 EPCMENKTYIVQGFGNVGFHAARYFR  300 (535)
Q Consensus       275 ~~~l~g~~VaIQGfGnVG~~~A~~L~  300 (535)
                      .+++.|++|+|+|-|||+.-+|+.|.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             CccccCceEEEECCCchhHhhhhhhc
Confidence            45678999999999999999999987

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.32  E-value=0.59  Score=38.45  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      -++++|+|.|.+|..+|..|.+.|.+|.-|.-.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            3799999999999999999999999987654333

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.29  E-value=0.56  Score=43.96  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ++|+|.|.| .|-+|+++++.|.++|+.|++++-
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r   40 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL   40 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            689999999 689999999999999999998763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.27  E-value=0.44  Score=42.70  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             CcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEe
Q psy1913         280 NKTYIVQGF-GNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       280 g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .+||.|.|. |.+|+++++.|.+.|.+|++++
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~   34 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLV   34 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence            478999995 9999999999999999999876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.25  E-value=0.64  Score=39.97  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCC-eEEE
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRA-KCLA  308 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~Ga-kVVa  308 (535)
                      .|.+|+|+|.|.+|..++..+...|+ +|++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~   58 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIG   58 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEe
Confidence            58999999999999999999999986 6666

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.23  E-value=4.3  Score=36.14  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=35.2

Q ss_pred             cEEEEEccccHHHHHHHHHHHCC-----CeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCc
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGR-----AKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTI  339 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~G-----akVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v  339 (535)
                      .+|+|=|||-+|+.+.|.+.+.+     ..||+|-|..          .|++.+. |.-+..|+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~----------~~~~~~a-yLlkyDSv   55 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMN----------TDAEYFA-YQMRYDTV   55 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESC----------CCHHHHH-HHHHEETT
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCC----------CCHHHHH-HHhhcccc
Confidence            58999999999999999988754     4789987753          5666654 33344443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=83.17  E-value=0.76  Score=38.83  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             CcEEEEEcc----ccHHHHHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccCCCCcccCC-CCcc
Q psy1913         280 NKTYIVQGF----GNVGFHAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGYPGTKSAPT-DIMF  354 (535)
Q Consensus       280 g~~VaIQGf----GnVG~~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~~~a~~i~~-ell~  354 (535)
                      -++|||.|.    +..|..+++.|.+.|++++-        |+|+-             ....+.+   ...+.. .=+.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~--------v~~~~-------------~~~~i~g---~~~~~~l~~i~   68 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLP--------VNPRF-------------QGEELFG---EEAVASLLDLK   68 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEE--------ECGGG-------------TTSEETT---EECBSSGGGCC
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceE--------EEecc-------------ccceeec---eecccchhhcc
Confidence            479999996    88999999999999998765        44431             0011222   111222 1122


Q ss_pred             ccceEEeeccc----cccccccccccccceEEEecCCCCCCHHHHHHHHhCCceeecc
Q psy1913         355 DKVDILVPAAI----EKVIRKSNADKVQAKIIVEAANGPLTPAAHAMLLKKNVLIIPD  408 (535)
Q Consensus       355 ~~~DILiPaA~----~~~It~~na~~i~AkiIvEgAN~p~T~eA~~iL~~rGI~viPD  408 (535)
                      .++|+.+-|..    ..++.+--...+++=++-.   |-.++|+.++.++.||.|+-|
T Consensus        69 ~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q~---G~~~~e~~~~a~~~Gi~vV~~  123 (136)
T d1iuka_          69 EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQS---GIRHPEFEKALKEAGIPVVAD  123 (136)
T ss_dssp             SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECT---TCCCHHHHHHHHHTTCCEEES
T ss_pred             CCCceEEEeccHHHHHHHHHHHHhhCCCeEEEec---CccCHHHHHHHHHcCCEEEcC
Confidence            34565554432    3333332222233323322   235789999999999988643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.11  E-value=0.6  Score=40.84  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=37.8

Q ss_pred             CCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecCCceEeCC
Q psy1913         277 CMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHDTAIVPD  319 (535)
Q Consensus       277 ~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~G~iynp  319 (535)
                      +++||+|+|.|.|+-|.-+|..|++.+++++.+.-+...+.-+
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~~~   71 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA   71 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceeeee
Confidence            5799999999999999999999999999999988876665543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=83.10  E-value=4.1  Score=35.70  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             cEEEEEccccHHHHHHHHHHHC-CCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRG-RAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~-GakVVaVsD~  312 (535)
                      .+|+|=|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~   34 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP   34 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4899999999999999988764 6899998874

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=83.07  E-value=0.62  Score=42.67  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=28.1

Q ss_pred             CCCcEEEEEcc-c--cHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGF-G--NVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGf-G--nVG~~~A~~L~e~GakVVa  308 (535)
                      |+||++.|.|. |  -+|..+|+.|.+.|++|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i   36 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAF   36 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            78999999996 4  4999999999999999885

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.69  E-value=1.3  Score=34.84  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             cEEEEEccccHHH-HHHHHHHHCCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcC
Q psy1913         281 KTYIVQGFGNVGF-HAARYFRRGRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKG  337 (535)
Q Consensus       281 ~~VaIQGfGnVG~-~~A~~L~e~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g  337 (535)
                      +||=+.|-|-.|- .+|++|+++|+.|.+             +|+...+..+..++.|
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsG-------------SD~~~~~~t~~L~~~G   46 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYG-------------SNIEETERTAYLRKLG   46 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE-------------ECSSCCHHHHHHHHTT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEE-------------EeCCCChhHHHHHHCC
Confidence            5788999999995 779999999999998             6666555555555554

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.66  E-value=0.78  Score=42.23  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=27.6

Q ss_pred             CCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQGF-GNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVa  308 (535)
                      |+||++.|.|. +..|+.+|+.|++.|++|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~   33 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVL   33 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            68999999885 55999999999999999887

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.54  E-value=1.2  Score=38.81  Aligned_cols=115  Identities=12%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             CcEEEEEcc-ccHHHHHHHHHHH-CCCeEEEEecCCceEeCCCCCCCCHHHHHHHHHHcCCcccC--CCCcccCC-CCcc
Q psy1913         280 NKTYIVQGF-GNVGFHAARYFRR-GRAKCLAIVEHDTAIVPDKGTEINYKDLHTYKITKGTIKGY--PGTKSAPT-DIMF  354 (535)
Q Consensus       280 g~~VaIQGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iynp~G~dLDi~~L~~~~~~~g~v~~~--~~a~~i~~-ell~  354 (535)
                      ..+|+|.|+ |.+|+.+++.+.+ .+.++++..|+.+.-+.  |  -|.          +.+.+.  .+....+. +.+.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~--g--~d~----------~~~~~~~~~~~~~~~~~~~~~   69 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL--G--SDA----------GELAGAGKTGVTVQSSLDAVK   69 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC--S--CCT----------TCSSSSSCCSCCEESCSTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc--c--chh----------hhhhccccCCceeeccHHHHh
Confidence            468999995 9999999998877 58899987776443211  2  111          111111  11122222 4445


Q ss_pred             ccceEEeecccccccccccc---ccccceEEEecCCCCCCHHHHHHHHh----CCceeeccccc
Q psy1913         355 DKVDILVPAAIEKVIRKSNA---DKVQAKIIVEAANGPLTPAAHAMLLK----KNVLIIPDIFA  411 (535)
Q Consensus       355 ~~~DILiPaA~~~~It~~na---~~i~AkiIvEgAN~p~T~eA~~iL~~----rGI~viPD~la  411 (535)
                      .+|||+|--+.+.... +++   .+.+.++|++-.-  .+++-.+.|++    -+|++.|-+..
T Consensus        70 ~~~DViIDFs~p~~~~-~~~~~a~~~~~~~ViGTTG--~~~~~~~~i~~~a~~ipi~~apN~Sl  130 (162)
T d1diha1          70 DDFDVFIDFTRPEGTL-NHLAFCRQHGKGMVIGTTG--FDEAGKQAIRDAAADIAIVFAANFSM  130 (162)
T ss_dssp             TSCSEEEECSCHHHHH-HHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred             cccceEEEeccHHHHH-HHHHHHHhccceeEEecCC--CcHHHHHHHHHHcCCCCEEEEccccH
Confidence            6899999998764432 333   3446788887443  35554555544    34677777653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.23  E-value=1.1  Score=40.16  Aligned_cols=31  Identities=10%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             cEEEEEcc-ccHHHHHHHHHHHCCCeEEEEec
Q psy1913         281 KTYIVQGF-GNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       281 ~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      ++|.|.|. |-+|+++++.|.++|+.|++++=
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r   33 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDV   33 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeec
Confidence            57999996 99999999999999999999653

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.19  E-value=0.44  Score=41.53  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEE
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaV  309 (535)
                      .++|+|+|-|+.|..+|.+|.+.|.+++.+
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vi   34 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLF   34 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence            479999999999999999999999998765

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.18  E-value=0.63  Score=42.20  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             CCCcEEEEEcccc---HHHHHHHHHHHCCCeEEEEecC
Q psy1913         278 MENKTYIVQGFGN---VGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       278 l~g~~VaIQGfGn---VG~~~A~~L~e~GakVVaVsD~  312 (535)
                      |+||++.|.|.+.   .|+.+|+.|++.|++|+. .+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i-~~~   39 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAF-TYQ   39 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEE-EES
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEE-EeC
Confidence            7899999998753   889999999999999875 443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.07  E-value=0.84  Score=41.36  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=25.7

Q ss_pred             CCCCCCcEEEEEccccHHHHHHHHHHHCC
Q psy1913         275 EPCMENKTYIVQGFGNVGFHAARYFRRGR  303 (535)
Q Consensus       275 ~~~l~g~~VaIQGfGnVG~~~A~~L~e~G  303 (535)
                      .+++.|++|+|+|-|||+.-+|+.|.+.+
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~   62 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPP   62 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCG
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCH
Confidence            45678999999999999999999999853

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.02  E-value=0.56  Score=43.45  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             CCCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         277 CMENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       277 ~l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      +|+||++.|.| .+.+|..+|+.|++.|++|+.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi   47 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIV   47 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE
Confidence            58999999999 688999999999999999886

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.96  E-value=0.57  Score=44.60  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             CCCCcEEEEEcc-ccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         277 CMENKTYIVQGF-GNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       277 ~l~g~~VaIQGf-GnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .|+||++.|.|. +..|+.+|+.|++.|++|+. .|.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi-~d~   39 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVV-NDL   39 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-EeC
Confidence            368999999985 56999999999999999764 554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=81.92  E-value=0.55  Score=42.30  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ..|+|+|.|-+|..+|..|+++|.+|+. .|.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~~V~v-lE~   35 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENKNTAL-FES   35 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEE-ECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEE-EeC
Confidence            4699999999999999999999999874 553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.86  E-value=0.55  Score=44.31  Aligned_cols=32  Identities=28%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             CCcEEEEEc-cccHHHHHHHHHHHCCCeEEEEe
Q psy1913         279 ENKTYIVQG-FGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       279 ~g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      +.|+|+|.| -|.+|+++++.|.+.|++|++++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~   34 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQV   34 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEE
Confidence            458999999 59999999999999999999986

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.69  E-value=1.4  Score=35.86  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ..++++|.|.|.+|-.+|..|.+.|.+|.-|.-.
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEee
Confidence            3589999999999999999999999998876644

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.66  E-value=0.71  Score=39.72  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      -+++|+|+|-||+|.-+|..+.+.|++.|.+.-.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEe
Confidence            3568999999999999999999999988776533

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.56  E-value=0.69  Score=40.98  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=28.0

Q ss_pred             cEEEEEccccHHHHHHHHHHHCCCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFRRGRAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~~  313 (535)
                      .+|+|+|.|.+|..+|..|.+.|..-|.|-|.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            479999999999999999999997555566753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.51  E-value=0.63  Score=44.20  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=28.6

Q ss_pred             CCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      +.|+|+|+|.|--|..+|..|+++|.+|+ |.|.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~-viEk   33 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVH-IIDQ   33 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEE-EEEC
Confidence            35899999999999999999999999876 4553

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=81.25  E-value=1.2  Score=38.93  Aligned_cols=34  Identities=18%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             CCcEEEEE--ccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         279 ENKTYIVQ--GFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       279 ~g~~VaIQ--GfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      .|.+|+|+  |.|.||..+.++....|++||+++.+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~   63 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRD   63 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEec
Confidence            47899998  67999999999999999999997743

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.73  E-value=0.3  Score=40.86  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=28.2

Q ss_pred             cEEEEEccccHHHHHHHHHH-HCCCeEEEEecCC
Q psy1913         281 KTYIVQGFGNVGFHAARYFR-RGRAKCLAIVEHD  313 (535)
Q Consensus       281 ~~VaIQGfGnVG~~~A~~L~-e~GakVVaVsD~~  313 (535)
                      .+|+|.|.|+.|+.+++.+. +.|+++||+.|.+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd   37 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVD   37 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc
Confidence            58999999999999998774 4689999988753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.66  E-value=0.67  Score=44.47  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHHCCCeEEEE
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRRGRAKCLAI  309 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e~GakVVaV  309 (535)
                      |++|.|.| .|-+|+++++.|++.|+.|++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            68999998 5999999999999999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.63  E-value=0.79  Score=37.45  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++|+|.|.|.+|-.+|..|++.|.+|.-|-
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~   52 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFA   52 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeee
Confidence            4799999999999999999999999987654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=0.078  Score=44.54  Aligned_cols=57  Identities=26%  Similarity=0.321  Sum_probs=42.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHhcHHHHHHhCCCCCCCCcEEEEEccccHHHHHHHHHHHCCCeEEEEecC
Q psy1913         244 IRGRESATGRGVFTAAEILVNNEEYMCEIGLEPCMENKTYIVQGFGNVGFHAARYFRRGRAKCLAIVEH  312 (535)
Q Consensus       244 s~gr~~aTg~GV~~~i~~~l~~~~~~~~~g~~~~l~g~~VaIQGfGnVG~~~A~~L~e~GakVVaVsD~  312 (535)
                      ++|..+..|+||.|+.-.  +        |  +-.+|++|+|.|.||-+-..|.+|.+..-+|.-|.-+
T Consensus         3 ipge~~~~gkgV~yca~c--D--------~--~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~   59 (126)
T d1trba2           3 LPSEEAFKGRGVSACATS--D--------G--FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR   59 (126)
T ss_dssp             CHHHHHTBTTTEESCHHH--H--------G--GGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CCCHHHhcCCCEEEEEec--c--------h--HHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeec
Confidence            445566788888775431  1        1  1247999999999999999999999998888876544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.36  E-value=0.79  Score=42.19  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             CCCcEEEEEc-cccHHHHHHHHHHHCCCeEEE
Q psy1913         278 MENKTYIVQG-FGNVGFHAARYFRRGRAKCLA  308 (535)
Q Consensus       278 l~g~~VaIQG-fGnVG~~~A~~L~e~GakVVa  308 (535)
                      |+||++.|.| .+..|+.+|+.|++.|++|+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~   34 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVAL   34 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence            6899999999 578999999999999999876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=0.89  Score=37.34  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=27.7

Q ss_pred             CcEEEEEccccHHHHHHHHHHHCCCeEEEEe
Q psy1913         280 NKTYIVQGFGNVGFHAARYFRRGRAKCLAIV  310 (535)
Q Consensus       280 g~~VaIQGfGnVG~~~A~~L~e~GakVVaVs  310 (535)
                      .++|+|.|.|.+|-.+|..|.+.|.+|.-|-
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~   52 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMI   52 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEe
Confidence            3799999999999999999999999976543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=80.12  E-value=0.66  Score=41.99  Aligned_cols=32  Identities=9%  Similarity=0.093  Sum_probs=28.5

Q ss_pred             CcEEEEEc-cccHHHHHHHHHHHCCCeEEEEec
Q psy1913         280 NKTYIVQG-FGNVGFHAARYFRRGRAKCLAIVE  311 (535)
Q Consensus       280 g~~VaIQG-fGnVG~~~A~~L~e~GakVVaVsD  311 (535)
                      .+||.|.| -|.+|+++++.|.+.|..|++++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R   35 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFR   35 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            46799999 599999999999999999998764