Psyllid ID: psy1924

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
cccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHcccccEEEEccccccccccccccccEEEcHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccc
cccHHHHHHccccccHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHHcccccEEEEEEEEccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHcEEcccccHHHHHHHHHccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEEccc
MFTPDFFLQILivnpfflypsfpvnvgedcpvfdGLYEFCQLSAGGSVAAAVKLNKQASEIcinwggglhhakkseasgfcyvnDIVLGILELLKYHQRVLYIdvdvhhgdgveeafytTDRVMTvsfhkygeyfpgtgdlrdmERVEKFNVIesrvmftpdfFLQILivnpfflypsfpvnvgedcpvfdGLYEFCQLSAGGSVAAAVKLNKQASEIcinwggglhhakkseasgfcyvnDIVLGILELLKYHQRVLYIDVDVH
MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYfpgtgdlrdmERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
****DFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVD**
MFTPDFFLQILI***********VNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
*FTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVEKFNVIESRVMFTPDFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
Q94517 521 Histone deacetylase Rpd3 yes N/A 0.452 0.230 0.983 2e-66
P56518 576 Histone deacetylase 1 OS= yes N/A 0.452 0.208 0.908 8e-63
P56517 480 Histone deacetylase 1 OS= yes N/A 0.452 0.25 0.9 1e-61
Q91695 480 Probable histone deacetyl N/A N/A 0.452 0.25 0.891 2e-61
Q4QQW4 482 Histone deacetylase 1 OS= yes N/A 0.452 0.248 0.891 3e-61
Q5RAG0 482 Histone deacetylase 1 OS= yes N/A 0.452 0.248 0.891 3e-61
Q13547 482 Histone deacetylase 1 OS= yes N/A 0.452 0.248 0.891 3e-61
O09106 482 Histone deacetylase 1 OS= yes N/A 0.452 0.248 0.891 3e-61
Q32PJ8 482 Histone deacetylase 1 OS= yes N/A 0.452 0.248 0.891 3e-61
Q92769 488 Histone deacetylase 2 OS= no N/A 0.452 0.245 0.875 1e-60
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2 Back     alignment and function desciption
 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query: 25  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
           NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN
Sbjct: 93  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 152

Query: 85  DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDM 144
           DIVLGILELLKYHQRVLYID+DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD+
Sbjct: 153 DIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDI 212
Catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation may constitute a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. For instance, deacetylation of histone H3 may be a prerequisite for the subsequent recruitment of the histone methyltransferase Su(var)3-9 to histones. Involved in position-effect variegation (PEV).
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
340718122 1431 PREDICTED: hypothetical protein LOC10064 0.452 0.083 0.983 3e-66
332027663 495 Histone deacetylase Rpd3 [Acromyrmex ech 0.452 0.242 0.991 3e-65
195011655 559 GH15691 [Drosophila grimshawi] gi|193896 0.452 0.214 0.983 5e-65
195402899 527 GJ15512 [Drosophila virilis] gi|19414183 0.452 0.227 0.983 6e-65
312371802 485 hypothetical protein AND_21626 [Anophele 0.452 0.247 0.983 7e-65
170042097 489 histone deacetylase Rpd3 [Culex quinquef 0.452 0.245 0.983 8e-65
194747495 525 GF25085 [Drosophila ananassae] gi|190623 0.452 0.228 0.983 9e-65
307176124 494 Histone deacetylase Rpd3 [Camponotus flo 0.452 0.242 0.983 9e-65
309400439 518 histone deacetylase [Drosophila nasuta] 0.452 0.231 0.983 1e-64
3659524 521 putative histone deacetylase [Drosophila 0.452 0.230 0.983 1e-64
>gi|340718122|ref|XP_003397521.1| PREDICTED: hypothetical protein LOC100642763 [Bombus terrestris] Back     alignment and taxonomy information
 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query: 25  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
           NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN
Sbjct: 95  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 154

Query: 85  DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDM 144
           DIVLGILELLKYHQRVLYID+DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD+
Sbjct: 155 DIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDI 214

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332027663|gb|EGI67731.1| Histone deacetylase Rpd3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195011655|ref|XP_001983253.1| GH15691 [Drosophila grimshawi] gi|193896735|gb|EDV95601.1| GH15691 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195402899|ref|XP_002060037.1| GJ15512 [Drosophila virilis] gi|194141835|gb|EDW58248.1| GJ15512 [Drosophila virilis] Back     alignment and taxonomy information
>gi|312371802|gb|EFR19897.1| hypothetical protein AND_21626 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170042097|ref|XP_001848775.1| histone deacetylase Rpd3 [Culex quinquefasciatus] gi|167865633|gb|EDS29016.1| histone deacetylase Rpd3 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|194747495|ref|XP_001956187.1| GF25085 [Drosophila ananassae] gi|190623469|gb|EDV38993.1| GF25085 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|307176124|gb|EFN65822.1| Histone deacetylase Rpd3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|309400439|gb|ADO79638.1| histone deacetylase [Drosophila nasuta] Back     alignment and taxonomy information
>gi|3659524|gb|AAC61494.1| putative histone deacetylase [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
FB|FBgn0015805 521 Rpd3 "Rpd3" [Drosophila melano 0.452 0.230 0.983 3.3e-63
UNIPROTKB|P56518 576 HDAC1 "Histone deacetylase 1" 0.452 0.208 0.908 5.7e-59
UNIPROTKB|P56517 480 HDAC1 "Histone deacetylase 1" 0.452 0.25 0.9 7.3e-59
UNIPROTKB|Q32PJ8 482 HDAC1 "Histone deacetylase 1" 0.452 0.248 0.891 1.9e-58
UNIPROTKB|E2R692 487 HDAC1 "Uncharacterized protein 0.452 0.246 0.891 1.9e-58
UNIPROTKB|F6X8F5 483 HDAC1 "Histone deacetylase" [C 0.452 0.248 0.891 1.9e-58
UNIPROTKB|J9NUI0 489 HDAC1 "Histone deacetylase" [C 0.452 0.245 0.891 1.9e-58
UNIPROTKB|Q13547 482 HDAC1 "Histone deacetylase 1" 0.452 0.248 0.891 1.9e-58
MGI|MGI:108086 482 Hdac1 "histone deacetylase 1" 0.452 0.248 0.891 1.9e-58
RGD|619975 482 Hdac1l "histone deacetylase 1- 0.452 0.248 0.891 1.9e-58
FB|FBgn0015805 Rpd3 "Rpd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 118/120 (98%), Positives = 120/120 (100%)

Query:    25 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
             NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN
Sbjct:    93 NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 152

Query:    85 DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDM 144
             DIVLGILELLKYHQRVLYID+DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD+
Sbjct:   153 DIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDI 212
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS
GO:0007350 "blastoderm segmentation" evidence=IMP
GO:0016575 "histone deacetylation" evidence=IMP;NAS
GO:0005634 "nucleus" evidence=IDA;NAS
GO:0016580 "Sin3 complex" evidence=NAS
GO:0000785 "chromatin" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP;NAS
GO:0016581 "NuRD complex" evidence=NAS;IPI
GO:0016458 "gene silencing" evidence=IMP
GO:0006342 "chromatin silencing" evidence=IGI;IMP;IPI
GO:0048477 "oogenesis" evidence=TAS
GO:0003714 "transcription corepressor activity" evidence=NAS;IPI
GO:0035098 "ESC/E(Z) complex" evidence=IDA;TAS
GO:0008340 "determination of adult lifespan" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0031523 "Myb complex" evidence=IDA
GO:0017053 "transcriptional repressor complex" evidence=IPI
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA
GO:0007517 "muscle organ development" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IDA
GO:0022904 "respiratory electron transport chain" evidence=IDA
GO:2001229 "negative regulation of response to gamma radiation" evidence=IMP
GO:0005705 "polytene chromosome interband" evidence=IDA
GO:0050771 "negative regulation of axonogenesis" evidence=IMP
GO:0070983 "dendrite guidance" evidence=IMP
GO:0070822 "Sin3-type complex" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|P56518 HDAC1 "Histone deacetylase 1" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.98330.45280.2303yesN/A
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.89160.45280.2489yesN/A
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.85830.45280.2603yesN/A
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.79830.42260.2765yesN/A
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.89160.45280.2489yesN/A
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.89160.45280.2489yesN/A
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.89160.45280.2489yesN/A
Q9FML2HDA6_ARATH3, ., 5, ., 1, ., 9, 80.8250.45280.2547yesN/A
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.89160.45280.2489yesN/A
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.68080.52830.3233yesN/A
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.90.45280.25yesN/A
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.78330.43770.2343yesN/A
P56518HDAC1_STRPU3, ., 5, ., 1, ., 9, 80.90830.45280.2083yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.98LOW CONFIDENCE prediction!
3rd Layer3.5.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 1e-91
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 2e-80
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-76
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 7e-76
PTZ00063 436 PTZ00063, PTZ00063, histone deacetylase; Provision 9e-73
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 2e-72
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 2e-68
cd09991 306 cd09991, HDAC_classI, Class I histone deacetylases 2e-59
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 4e-55
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 4e-49
cd10004 375 cd10004, RPD3-like, reduced potassium dependency-3 6e-49
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 6e-49
cd10005 381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 4e-48
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 4e-48
cd10010 371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 3e-47
cd10011 366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 3e-47
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 3e-47
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-46
PTZ00063 436 PTZ00063, PTZ00063, histone deacetylase; Provision 2e-45
cd11598 311 cd11598, HDAC_Hos2, Class I histone deacetylases i 2e-45
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 7e-44
cd10000 364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 2e-33
COG0123 340 COG0123, AcuC, Deacetylases, including yeast histo 4e-29
cd09301 279 cd09301, HDAC, Histone deacetylase (HDAC) classes 5e-29
cd11680 294 cd11680, HDAC_Hos1, Class I histone deacetylases H 7e-29
PTZ00346 429 PTZ00346, PTZ00346, histone deacetylase; Provision 1e-26
cd09994 313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 3e-26
pfam00850 300 pfam00850, Hist_deacetyl, Histone deacetylase doma 3e-25
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 4e-22
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-20
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 7e-20
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 2e-18
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 4e-17
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 1e-16
cd09993 275 cd09993, HDAC_classIV, Histone deacetylase class I 4e-15
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-14
cd10006409 cd10006, HDAC4, Histone deacetylase 4 6e-14
cd10007420 cd10007, HDAC5, Histone deacetylase 5 7e-14
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-13
cd10009379 cd10009, HDAC9, Histone deacetylase 9 1e-13
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-13
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 4e-13
cd10008378 cd10008, HDAC7, Histone deacetylase 7 5e-13
cd11683337 cd11683, HDAC10, Histone deacetylase 10 4e-09
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 7e-08
cd10001 298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-07
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 5e-07
cd09996 359 cd09996, HDAC_classII_1, Histone deacetylases and 2e-06
cd09992 291 cd09992, HDAC_classII, Histone deacetylases and hi 6e-06
cd11599 288 cd11599, HDAC_classII_2, Histone deacetylases and 9e-06
cd10003 350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 1e-04
cd11681 377 cd11681, HDAC_classIIa, Histone deacetylases, clas 4e-04
cd10002 336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 0.001
cd09987 217 cd09987, Arginase_HDAC, Arginase-like and histone- 0.002
cd09998 353 cd09998, HDAC_Hos3, Class II histone deacetylases 0.002
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information 
 Score =  272 bits (698), Expect = 1e-91
 Identities = 100/119 (84%), Positives = 108/119 (90%)

Query: 25  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
           NVGEDCPVFDGLYE+CQL AGGS+AAAVKLN+  ++I INW GGLHHAKKSEASGFCYVN
Sbjct: 82  NVGEDCPVFDGLYEYCQLYAGGSIAAAVKLNRGQADIAINWAGGLHHAKKSEASGFCYVN 141

Query: 85  DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 143
           DIVL ILELLKYHQRVLYID+D+HHGDGVEEAFYTTDRVMTVSFHK+GEYF     LRD
Sbjct: 142 DIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKFGEYFFPGTGLRD 200

Class I histone deacetylases (HDACs) are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues in histone amino termini to yield a deacetylated histone (EC 3.5.1.98). Enzymes belonging to this group participate in regulation of a number of processes through protein (mostly different histones) modification (deacetylation). Class I histone deacetylases in general act via the formation of large multiprotein complexes. This group includes animal HDAC1, HDAC2, HDAC3, HDAC8, fungal RPD3, HOS1 and HOS2, plant HDA9, protist, archaeal and bacterial (AcuC) deacetylases. Members of this class are involved in cell cycle regulation, DNA damage response, embryonic development, cytokine signaling important for immune response and in posttranslational control of the acetyl coenzyme A synthetase. In mammals, they are known to be involved in progression of various tumors. Specific inhibitors of mammalian histone deacetylases are an emerging class of promising novel anticancer drugs. Length = 306
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
KOG1342|consensus425 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343|consensus797 99.97
KOG1344|consensus324 99.92
KOG1342|consensus 425 99.86
PTZ00063 436 histone deacetylase; Provisional 99.85
PTZ00346 429 histone deacetylase; Provisional 99.85
KOG1343|consensus 797 99.83
COG0123 340 AcuC Deacetylases, including yeast histone deacety 99.81
PF00850 311 Hist_deacetyl: Histone deacetylase domain; InterPr 99.79
KOG1344|consensus 324 98.92
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-57  Score=424.19  Aligned_cols=242  Identities=45%  Similarity=0.750  Sum_probs=211.8

Q ss_pred             CHHHHHHHHhhCCCCCC----CCCCcccC--CCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCC
Q psy1924           3 TPDFFLQILIVNPFFLY----PSFPVNVG--EDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSE   76 (265)
Q Consensus         3 ~~~yv~~~~~~~p~~~~----~~~~~~~~--~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~   76 (265)
                      +++||+.|+.++|++..    ++.+|+++  .|||+++++++++++++||+|.||+.+++++.++|+|||||+|||++++
T Consensus        64 s~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~  143 (436)
T PTZ00063         64 DEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSE  143 (436)
T ss_pred             CHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCC
Confidence            79999999998887433    35567777  5999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCCCCCCCCCCCccccCc----eeeE
Q psy1924          77 ASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDMERVE----KFNV  152 (265)
Q Consensus        77 ~~Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~~~P~~g~~~~~g~g~----~~ni  152 (265)
                      ++|||+|||+||||++|++.++||+|||||||||||||++|+++++|+++|+|++++|||+||+..++|.+.    .+|+
T Consensus       144 A~GFC~~NdiaiAi~~L~~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNv  223 (436)
T PTZ00063        144 ASGFCYINDIVLGILELLKYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNV  223 (436)
T ss_pred             CCceeeecHHHHHHHHHHHhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEe
Confidence            999999999999999999999999999999999999999999999999999999977999999999887543    4799


Q ss_pred             EeecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCc
Q psy1924         153 IESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHH  228 (265)
Q Consensus       153 ~~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhH  228 (265)
                      |++.+..+.+|...+.. +.|  ..|+|+ +++|+|+|++..||++.+ ++|..|+....+.+.+...+++++++|||+.
T Consensus       224 PL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l-~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~  302 (436)
T PTZ00063        224 PLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRF-NLTIKGHAACVEFVRSLNIPLLVLGGGGYTI  302 (436)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCc-ccCHHHHHHHHHHHHhcCCCEEEEeCccCCc
Confidence            99987766666554432 223  347898 678999999999999997 7999999888888877667888899999997


Q ss_pred             ccCCCCceechhhHHHHHH
Q psy1924         229 AKKSEASGFCYVNDIVLGI  247 (265)
Q Consensus       229 A~~~~a~gfC~~n~~ala~  247 (265)
                      ...  +.+||+.+.++++.
T Consensus       303 ~~l--ar~w~~~t~~~~~~  319 (436)
T PTZ00063        303 RNV--ARCWAYETGVILNK  319 (436)
T ss_pred             hHH--HHHHHHHHHHHhCC
Confidence            544  56999999999875

>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 3e-61
3max_A 367 Crystal Structure Of Human Hdac2 Complexed With An 6e-39
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-48
4a69_A 376 Structure Of Hdac3 Bound To Corepressor And Inosito 4e-31
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 2e-33
2v5w_A 388 Crystal Structure Of Hdac8-Substrate Complex Length 7e-20
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-33
3f07_A 388 Crystal Structure Analysis Of Human Hdac8 Complexed 8e-20
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-33
3sff_A 378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 8e-20
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 2e-33
3mz3_A 389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 8e-20
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-33
2v5x_A 388 Crystal Structure Of Hdac8-Inhibitor Complex Length 8e-20
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 2e-33
1t64_A 377 Crystal Structure Of Human Hdac8 Complexed With Tri 8e-20
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 7e-33
3ezt_A 388 Crystal Structure Analysis Of Human Hdac8 D101e Var 3e-19
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 7e-33
3ezp_A 388 Crystal Structure Analysis Of Human Hdac8 D101n Var 3e-19
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 2e-32
3f06_A 388 Crystal Structure Analysis Of Human Hdac8 D101a Var 6e-19
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-32
3ewf_A 388 Crystal Structure Analysis Of Human Hdac8 H143a Var 9e-19
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 3e-32
3ew8_A 388 Crystal Structure Analysis Of Human Hdac8 D101l Var 1e-18
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 3e-32
3mz4_A 389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 1e-18
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 6e-19
1c3r_A 375 Crystal Structure Of An Hdac Homolog Complexed With 2e-09
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 7e-19
1c3p_A 375 Crystal Structure Of An Hdac Homolog From Aquifex A 2e-09
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 2e-11
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 2e-11
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 2e-11
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 2e-11
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 3e-11
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 4e-09
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 4e-09
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 1e-08
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 2e-05
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 2e-04
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (590), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 105/120 (87%), Positives = 114/120 (95%)
Query: 25  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
           NVGEDCPVFDGL+EFCQLS GGSVA AVKLN+Q +++ +NW GGLHHAKKSEASGFCYVN
Sbjct: 89  NVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVN 148
Query: 85  DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDM 144
           DIVL ILELLKYHQRVLYID+D+HHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD+
Sbjct: 149 DIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDI 208
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 4e-77
3max_A 367 HD2, histone deacetylase 2; class 2, HDAC, foot po 2e-47
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 2e-76
3ew8_A 388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 3e-48
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 2e-71
4a69_A 376 Histone deacetylase 3,; transcription, hydrolase; 7e-44
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 4e-69
1c3p_A 375 Protein (HDLP (histone deacetylase-like protein) ) 2e-42
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 2e-23
1zz1_A 369 Histone deacetylase-like amidohydrolase; HET: SHH; 4e-07
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 3e-22
3men_A 362 Acetylpolyamine aminohydrolase; histone deacetylas 1e-09
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 4e-21
2pqp_A 421 HD7A, histone deacetylase 7A; HDAC, structural gen 2e-06
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 1e-20
3q9b_A 341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-08
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
 Score =  237 bits (606), Expect = 4e-77
 Identities = 105/119 (88%), Positives = 113/119 (94%)

Query: 25  NVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVN 84
           NVGEDCPVFDGL+EFCQLS GGSVA AVKLN+Q +++ +NW GGLHHAKKSEASGFCYVN
Sbjct: 89  NVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVN 148

Query: 85  DIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 143
           DIVL ILELLKYHQRVLYID+D+HHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD
Sbjct: 149 DIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 207
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3ew8_A 388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 99.86
3max_A 367 HD2, histone deacetylase 2; class 2, HDAC, foot po 99.86
4a69_A 376 Histone deacetylase 3,; transcription, hydrolase; 99.85
3q9b_A 341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 99.83
1zz1_A 369 Histone deacetylase-like amidohydrolase; HET: SHH; 99.83
3men_A 362 Acetylpolyamine aminohydrolase; histone deacetylas 99.82
1c3p_A 375 Protein (HDLP (histone deacetylase-like protein) ) 99.8
2pqp_A 421 HD7A, histone deacetylase 7A; HDAC, structural gen 99.72
2vqm_A 413 HD4, histone deacetylase 4; inhibitor, repressor, 99.7
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-58  Score=425.89  Aligned_cols=241  Identities=45%  Similarity=0.737  Sum_probs=211.2

Q ss_pred             CHHHHHHHHhhCCCCC----CCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCC
Q psy1924           3 TPDFFLQILIVNPFFL----YPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEAS   78 (265)
Q Consensus         3 ~~~yv~~~~~~~p~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~   78 (265)
                      |++||+.|+..+|...    .+++.++++.|||+++++++++++++|++|.|++.+.+|+.++|++++||+|||.+++++
T Consensus        63 s~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~  142 (376)
T 4a69_A           63 SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEAS  142 (376)
T ss_dssp             CHHHHHHHHHCCTTTGGGGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCB
T ss_pred             CHHHHHHHHHhCcccchhhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCC
Confidence            7999999998887632    124468899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCC-CCCCCCCCCccccC----ceeeEE
Q psy1924          79 GFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDMERV----EKFNVI  153 (265)
Q Consensus        79 Gfc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~-~~P~~g~~~~~g~g----~~~ni~  153 (265)
                      |||+|||+||||++|++..+||+|||||||||||||++|++||+|+++|+|++++ |||++|..+++|.+    ..+|+|
T Consensus       143 GFC~~NdvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvP  222 (376)
T 4a69_A          143 GFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVP  222 (376)
T ss_dssp             TTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEE
T ss_pred             cchhhhHHHHHHHHHHHhCCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeee
Confidence            9999999999999999989999999999999999999999999999999999876 89999999998765    368999


Q ss_pred             eecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCcc
Q psy1924         154 ESRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHA  229 (265)
Q Consensus       154 ~~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA  229 (265)
                      ++....+.+|...+.. +.|  ..|+|+ +++|+|+|++..|||..+ ++|..++.+.++.+.+...+++++++|||+..
T Consensus       223 L~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l-~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~  301 (376)
T 4a69_A          223 LRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCF-NLSIRGHGECVEYVKSFNIPLLVLGGGGYTVR  301 (376)
T ss_dssp             ECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCC-BBCHHHHHHHHHHHHTTCCCEEEECCCCCSHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCe-ecCHHHHHHHHHHHHHcCCCEEEEECCCCChh
Confidence            9987666677655532 233  347898 678999999999999987 79999999999888877778999999999975


Q ss_pred             cCCCCceechhhHHHHH
Q psy1924         230 KKSEASGFCYVNDIVLG  246 (265)
Q Consensus       230 ~~~~a~gfC~~n~~ala  246 (265)
                      ..  +.+|++.+.++++
T Consensus       302 ~v--ar~w~~~~a~l~g  316 (376)
T 4a69_A          302 NV--ARCWTYETSLLVE  316 (376)
T ss_dssp             HH--HHHHHHHHHHHTT
T ss_pred             HH--HHHHHHHHHHhcC
Confidence            44  5588888877765
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 3e-16
d1t64a_ 364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 9e-12
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 3e-11
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-07
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 3e-16
 Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 1/140 (0%)

Query: 5   DFFLQILIVNPFFLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICIN 64
               ++          S    +G DCP  +G++++     G ++ AA  L     ++ IN
Sbjct: 64  QHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAIN 123

Query: 65  WGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVM 124
           W GG HHAKK EASGFCY+ND VLGIL L +  +R+LY+D+D+HHGDGVE+AF  T +VM
Sbjct: 124 WSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVM 183

Query: 125 TVSFHKYGEY-FPGTGDLRD 143
           TVS HK+    FPGTGD+ D
Sbjct: 184 TVSLHKFSPGFFPGTGDVSD 203
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
d1t64a_ 364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 99.83
d1c3pa_ 372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 99.74
d3c10a1 386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 99.73
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-56  Score=407.19  Aligned_cols=242  Identities=34%  Similarity=0.586  Sum_probs=210.8

Q ss_pred             CHHHHHHHHhhCCC---CCCCCCCcccCCCCCCChhHHHHHHHHhhHHHHHHHHHhccCCceEEecCCCCCCcccCCCCc
Q psy1924           3 TPDFFLQILIVNPF---FLYPSFPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASG   79 (265)
Q Consensus         3 ~~~yv~~~~~~~p~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~a~~~~~g~HHa~~~~~~G   79 (265)
                      |++||+.|+..+++   ...+...++++.|||+++++++++++++|+++.|++.+.+|+..+|++++||+|||.+++++|
T Consensus        59 s~~Yi~~l~~~~~~~~~~~~~~~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~G  138 (364)
T d1t64a_          59 TDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASG  138 (364)
T ss_dssp             CHHHHHHHHHHHHHCSSCCTTTTTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBT
T ss_pred             CHHHHHHHHHhhhccccccchheeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccc
Confidence            78999999775433   223466788999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHhCCcEEEEeccccCCCcceecceecCceEEEEccCcCC-CCCCCCCCCccccCc----eeeEEe
Q psy1924          80 FCYVNDIVLGILELLKYHQRVLYIDVDVHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDMERVE----KFNVIE  154 (265)
Q Consensus        80 fc~~n~~a~a~~~~~~~~~rv~iiD~D~h~g~G~~~~f~~d~~vl~~S~h~~~~-~~P~~g~~~~~g~g~----~~ni~~  154 (265)
                      ||+|||+||||+++++..+||+|||||+|||||||++|++||+|+++|+|+++. |||++|...++|.+.    .+|+|+
T Consensus       139 FC~~NdvaiA~~~~~~~~~RV~iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL  218 (364)
T d1t64a_         139 FCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPI  218 (364)
T ss_dssp             TBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEE
T ss_pred             cccccHHHHHHHHHHhhhceEEEEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeec
Confidence            999999999999998888999999999999999999999999999999999875 999999999987654    579999


Q ss_pred             ecccCCHHHHHHHHh-hCC--CccCCC-CCeeecCCCCccCcccccccccHhHHHHHHHHHhhhccceeeccCCCcCccc
Q psy1924         155 SRVMFTPDFFLQILI-VNP--FFLYPS-FPVNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAK  230 (265)
Q Consensus       155 ~~~~~~~d~~~~l~~-v~p--~~~~P~-i~v~aG~D~~~~d~l~~~a~lsaGg~l~a~~~l~~~~~~~a~~~~GGyhHA~  230 (265)
                      +....+.+|...+.. +.|  ..|+|+ +++|+|+|++..||+..+ ++|..++...++.+.+.+.+++++.+|||+...
T Consensus       219 ~~g~~d~~y~~~~~~~i~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~-~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~  297 (364)
T d1t64a_         219 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSF-NMTPVGIGKCLKYILQWQLATLILGGGGYNLAN  297 (364)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCC-CBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHH
T ss_pred             ccccChHHHHHHHHHhhHHHhhcCCCCEEEEECCccCCCCCCCCCC-cCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHH
Confidence            877666666554432 222  347898 678999999999999987 799999999999998877788888999999876


Q ss_pred             CCCCceechhhHHHHHH
Q psy1924         231 KSEASGFCYVNDIVLGI  247 (265)
Q Consensus       231 ~~~a~gfC~~n~~ala~  247 (265)
                      .  +.+|++++.++++.
T Consensus       298 ~--ar~w~~~~~~l~g~  312 (364)
T d1t64a_         298 T--ARCWTYLTGVILGK  312 (364)
T ss_dssp             H--HHHHHHHHHHHHTC
T ss_pred             H--HHHHHHHHHHHcCC
Confidence            6  45999999888863
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure