Psyllid ID: psy1940

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MLYLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Secondary Structure (PSIPRED)
cEEEEcccccEEEEcccccccEEEccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccEEEEccccHHEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEc
Coil and Loop (DISEMBL)
mlylqcsqdlsstelssssspvtiNAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVElrrgsdpatlyw
Flexible Loop (DISEMBL)
MLYLQCSqdlsstelssssspVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLkkvqlvelrrgsdpatlyw
Low Complexity Region (SEG)
MLYLQCsqdlsstelsssssPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Disordered region (IsUnstruct)
****************************SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR**********
Disordered Region (DISOPRED)
*LYLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Disordered Region (DISEMBL)
***********************INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Disordered Region (DISPRO)
MLYLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLYLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q7ZUX3	358	WD repeat domain phosphoi	yes	N/A	0.884	0.192	0.681	5e-22
Q6DCV0	355	WD repeat domain phosphoi	N/A	N/A	0.884	0.194	0.681	2e-21
Q9Y484	360	WD repeat domain phosphoi	yes	N/A	0.884	0.191	0.666	3e-21
Q91VM3	360	WD repeat domain phosphoi	yes	N/A	0.884	0.191	0.666	3e-21
Q5R7W0	344	WD repeat domain phosphoi	no	N/A	0.833	0.188	0.550	2e-12
Q9CR39	344	WD repeat domain phosphoi	no	N/A	0.833	0.188	0.550	2e-12
Q5MNZ6	344	WD repeat domain phosphoi	no	N/A	0.833	0.188	0.550	2e-12
Q640T2	344	WD repeat domain phosphoi	no	N/A	0.833	0.188	0.550	2e-12
Q68F45	344	WD repeat domain phosphoi	N/A	N/A	0.833	0.188	0.550	2e-12
Q5ZL16	344	WD repeat domain phosphoi	yes	N/A	0.833	0.188	0.536	6e-12

>sp|Q7ZUX3|WIPI4_DANRE WD repeat domain phosphoinositide-interacting protein 4 OS=Danio rerio GN=wdr45 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLS+T+  +SS+P TINAHQSE+ACLALNQ G+++A+AS KGTLIR++DT  + +LVELR
Sbjct: 171 DLSNTKPGTSSAPFTINAHQSEIACLALNQPGSVVASASRKGTLIRLFDTTTRDKLVELR 230

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 231 RGTDPATLY 239

Danio rerio (taxid: 7955)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 58/69 (84%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL + +  SSS+P TINAHQSEL CLA+NQ GT++A+AS KGTLIR++DT  + QLVELR
Sbjct: 168 DLCNAKPGSSSAPFTINAHQSELGCLAINQQGTLVASASRKGTLIRLFDTQTREQLVELR 227

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 228 RGTDPATLY 236

Xenopus laevis (taxid: 8355)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+ST+  +SS+P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELR
Sbjct: 173 DLASTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELR 232

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 233 RGTDPATLY 241

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/69 (66%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+ST+  +SS+P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELR
Sbjct: 173 DLASTKPGTSSAPFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELR 232

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 233 RGTDPATLY 241

Mus musculus (taxid: 10090)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+STE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLASTE----KPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Pongo abelii (taxid: 9601)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+STE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLASTE----KPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Mus musculus (taxid: 10090)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+STE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLASTE----KPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Homo sapiens (taxid: 9606)

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+STE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLASTE----KPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Xenopus tropicalis (taxid: 8364)

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL+STE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLASTE----KPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Xenopus laevis (taxid: 8355)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL++TE      PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELR
Sbjct: 170 DLANTE----KPPVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELR 225

Query: 69  RGSDPATLY 77
           RGS  A +Y
Sbjct: 226 RGSQAANIY 234

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
242006835	379	WD repeat domain phosphoinositide-intera	0.884	0.182	0.797	8e-25
442762509	337	Hypothetical protein, partial [Ixodes ri	0.884	0.204	0.797	9e-23
321478800	348	hypothetical protein DAPPUDRAFT_190531 [	0.884	0.198	0.753	1e-21
196476718	228	WD repeat domain 45-like protein [Amblyo	0.897	0.307	0.728	3e-21
346470733	346	hypothetical protein [Amblyomma maculatu	0.884	0.199	0.753	6e-21
327282229	358	PREDICTED: WD repeat domain phosphoinosi	0.884	0.192	0.695	8e-21
427778677	385	Hypothetical protein [Rhipicephalus pulc	0.948	0.192	0.689	1e-20
307170168	345	WD repeat domain phosphoinositide-intera	0.884	0.2	0.681	2e-20
345324568	222	PREDICTED: WD repeat domain phosphoinosi	0.884	0.310	0.681	2e-20
146332319	189	WD repeat domain phosphoinositide intera	0.884	0.365	0.681	2e-20

>gi|242006835|ref|XP_002424250.1| WD repeat domain phosphoinositide-interacting protein, putative [Pediculus humanus corporis] gi|212507619|gb|EEB11512.1| WD repeat domain phosphoinositide-interacting protein, putative [Pediculus humanus corporis]

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL STE+ +SS+PVTINAHQ ELACLA++Q GTM+ATAS+KGTLIRVWDT+KK  LVELR
Sbjct: 168 DLGSTEIGTSSAPVTINAHQGELACLAVSQQGTMVATASTKGTLIRVWDTVKKALLVELR 227

Query: 69  RGSDPATLY 77
           RGSDPATLY
Sbjct: 228 RGSDPATLY 236

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442762509|gb|JAA73413.1| Hypothetical protein, partial [Ixodes ricinus]

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLS+TE SSS SPVTI AHQ+E+ACLALNQTGTM+ATAS KGTLIRV+DT K+  LVELR
Sbjct: 159 DLSATEPSSSLSPVTIPAHQNEIACLALNQTGTMLATASQKGTLIRVFDTFKRTLLVELR 218

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 219 RGTDPATLY 227

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478800|gb|EFX89757.1| hypothetical protein DAPPUDRAFT_190531 [Daphnia pulex]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/69 (75%), Positives = 59/69 (85%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLS TEL  SS+P TI+AHQ E+ACLALN  GT++ATAS KGTLIRVWDT+K+  LVELR
Sbjct: 169 DLSVTELGISSAPQTISAHQGEVACLALNSQGTVVATASDKGTLIRVWDTVKRTLLVELR 228

Query: 69  RGSDPATLY 77
           RGSDPATLY
Sbjct: 229 RGSDPATLY 237

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196476718|gb|ACG76224.1| WD repeat domain 45-like protein [Amblyomma americanum]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 62/70 (88%)

Query: 8   QDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL 67
           +DLS+T  SSS SPVTI AHQ+++AC+ALNQ GTM+ATAS KGTLIRV+DTLK+  +VEL
Sbjct: 78  KDLSATVPSSSMSPVTIPAHQNDIACIALNQEGTMLATASQKGTLIRVFDTLKRNLVVEL 137

Query: 68  RRGSDPATLY 77
           RRG+DPATLY
Sbjct: 138 RRGADPATLY 147

Source: Amblyomma americanum

Species: Amblyomma americanum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470733|gb|AEO35211.1| hypothetical protein [Amblyomma maculatum]

 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLS+T  SSS SPVTI AHQ+E+AC+ALNQ GTM+ATAS KGTLIRV+DTLK+  +VELR
Sbjct: 168 DLSATVPSSSMSPVTIPAHQNEIACIALNQEGTMLATASQKGTLIRVFDTLKRNLVVELR 227

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 228 RGADPATLY 236

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327282229|ref|XP_003225846.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 4-like [Anolis carolinensis]

 Score =  104 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/69 (69%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLSST+  +SS+P TINAHQSE+AC++LNQ GT++A+AS KGTLIR++DT  K +LVELR
Sbjct: 171 DLSSTKPGTSSAPFTINAHQSEIACISLNQQGTVVASASKKGTLIRLFDTQTKEKLVELR 230

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 231 RGTDPATLY 239

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427778677|gb|JAA54790.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 62/74 (83%)

Query: 4   LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ 63
           L  + DLS+T  S S SPVTI AHQ+++AC+ALNQ GTM+ATAS KGTLIRV+DTLK+  
Sbjct: 202 LATAXDLSATVPSMSMSPVTIAAHQNDIACIALNQEGTMLATASQKGTLIRVFDTLKRNL 261

Query: 64  LVELRRGSDPATLY 77
           +VELRRG+DPATLY
Sbjct: 262 VVELRRGADPATLY 275

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170168|gb|EFN62575.1| WD repeat domain phosphoinositide-interacting protein 4 [Camponotus floridanus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/69 (68%), Positives = 60/69 (86%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DL++TE  SSS+P+T++AHQ  LACLA+N  GTMIATAS +GTLIRVWD++++  LVELR
Sbjct: 166 DLAATEAGSSSAPITLSAHQGALACLAVNGNGTMIATASVQGTLIRVWDSVRRSLLVELR 225

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 226 RGADPATLY 234

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345324568|ref|XP_003430832.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 4-like [Ornithorhynchus anatinus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 61/69 (88%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           DLSST+  +SS+P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELR
Sbjct: 62  DLSSTKPGTSSAPFTINAHQSDIACISLNQQGTVVASASQKGTLIRLFDTQTKEKLVELR 121

Query: 69  RGSDPATLY 77
           RG+DPATLY
Sbjct: 122 RGTDPATLY 130

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|146332319|gb|ABQ22665.1| WD repeat domain phosphoinositide interacting protein 4-like protein [Callithrix jacchus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 61/69 (88%)

Query: 9  DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
          DLSST+  +SS+P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELR
Sbjct: 2  DLSSTKPGTSSAPFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELR 61

Query: 69 RGSDPATLY 77
          RG+DPATLY
Sbjct: 62 RGTDPATLY 70

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
UNIPROTKB|Q5M8E0	329	wdr45 "WD repeat domain 45" [X	0.730	0.173	0.736	5.8e-18
UNIPROTKB|C9JYH8	325	WDR45 "WD repeat domain 45, is	0.730	0.175	0.701	1.6e-17
ZFIN|ZDB-GENE-040426-990	358	wdr45 "WD repeat domain 45" [D	0.730	0.159	0.719	3.1e-17
UNIPROTKB|Q9Y484	360	WDR45 "WD repeat domain phosph	0.730	0.158	0.701	3.2e-17
UNIPROTKB|Q0IIH0	360	WDR45 "WD repeat domain 45" [B	0.730	0.158	0.701	4.2e-17
MGI|MGI:1859606	360	Wdr45 "WD repeat domain 45" [M	0.730	0.158	0.701	4.2e-17
UNIPROTKB|Q5MNZ6	344	WDR45B "WD repeat domain phosp	0.730	0.165	0.578	5.2e-11
MGI|MGI:1914090	344	Wdr45b "WD repeat domain 45B"	0.730	0.165	0.578	5.2e-11
RGD|1305141	344	Wdr45b "WD repeat domain 45B"	0.730	0.165	0.578	5.2e-11
UNIPROTKB|Q5ZL16	344	WDR45B "WD repeat domain phosp	0.730	0.165	0.578	6.7e-11

UNIPROTKB|Q5M8E0 wdr45 "WD repeat domain 45" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 42/57 (73%), Positives = 50/57 (87%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQSEL CLA+NQ GT++A+AS KGTLIR++DT  + QLVELRRG+DPATLY
Sbjct:   154 PFTINAHQSELGCLAVNQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLY 210

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|C9JYH8 WDR45 "WD repeat domain 45, isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 40/57 (70%), Positives = 51/57 (89%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELRRG+DPATLY
Sbjct:   150 PFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLY 206

GO:0005083 "small GTPase regulator activity" evidence=IEA

ZFIN|ZDB-GENE-040426-990 wdr45 "WD repeat domain 45" [Danio rerio (taxid:7955)]

 Score = 214 (80.4 bits), Expect = 3.1e-17, P = 3.1e-17
 Identities = 41/57 (71%), Positives = 51/57 (89%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQSE+ACLALNQ G+++A+AS KGTLIR++DT  + +LVELRRG+DPATLY
Sbjct:   183 PFTINAHQSEIACLALNQPGSVVASASRKGTLIRLFDTTTRDKLVELRRGTDPATLY 239

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q9Y484 WDR45 "WD repeat domain phosphoinositide-interacting protein 4" [Homo sapiens (taxid:9606)]

 Score = 214 (80.4 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/57 (70%), Positives = 51/57 (89%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELRRG+DPATLY
Sbjct:   185 PFTINAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLY 241

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0IIH0 WDR45 "WD repeat domain 45" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 40/57 (70%), Positives = 51/57 (89%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELRRG+DPATLY
Sbjct:   185 PFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLY 241

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

MGI|MGI:1859606 Wdr45 "WD repeat domain 45" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 40/57 (70%), Positives = 51/57 (89%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             P TINAHQS++AC++LNQ GT++A+AS KGTLIR++DT  K +LVELRRG+DPATLY
Sbjct:   185 PFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLY 241

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5MNZ6 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELRRGS  A +Y
Sbjct:   178 PVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIY 234

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

MGI|MGI:1914090 Wdr45b "WD repeat domain 45B" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELRRGS  A +Y
Sbjct:   178 PVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIY 234

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

RGD|1305141 Wdr45b "WD repeat domain 45B" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELRRGS  A +Y
Sbjct:   178 PVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIY 234

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5ZL16 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query:    21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY 77
             PV I AH+  L+C+ALN  GT IATAS KGTLIR++DT     + ELRRGS  A +Y
Sbjct:   178 PVDIPAHEGILSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIY 234

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91VM3	WIPI4_MOUSE	No assigned EC number	0.6666	0.8846	0.1916	yes	N/A
Q7ZUX3	WIPI4_DANRE	No assigned EC number	0.6811	0.8846	0.1927	yes	N/A
Q9Y484	WIPI4_HUMAN	No assigned EC number	0.6666	0.8846	0.1916	yes	N/A
Q9HDZ7	ATG18_SCHPO	No assigned EC number	0.5185	0.6923	0.1447	yes	N/A
Q6C044	ATG18_YARLI	No assigned EC number	0.5185	0.6923	0.135	yes	N/A
A2RAG5	ATG18_ASPNC	No assigned EC number	0.5370	0.6923	0.1301	yes	N/A
Q5BH53	ATG18_EMENI	No assigned EC number	0.5185	0.6923	0.1258	yes	N/A
Q6BUX9	HSV2_DEBHA	No assigned EC number	0.5094	0.6794	0.1226	yes	N/A
Q5ZL16	WIPI3_CHICK	No assigned EC number	0.5362	0.8333	0.1889	yes	N/A
Q2U6D5	ATG18_ASPOR	No assigned EC number	0.5370	0.6923	0.1307	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
          T+  H   +  +A +  G  +A+ S  GT I++WD
Sbjct: 7  TLKGHTGPVTSVAFSPDGKYLASGSDDGT-IKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 15  LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           L +     T+  H S ++ +A +  G +++++S   T I+VWD      L  LR
Sbjct: 80  LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT-IKVWDVETGKCLTTLR 132

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.3 bits (79), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
          T+  H   +  +A +  G ++A+ S  GT +RVWD
Sbjct: 6  TLKGHTGPVTSVAFSPDGNLLASGSDDGT-VRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 23  TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR 68
           T+  H  E+  +A +  G  + ++SS GT I++WD      L  LR
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
          T+  H   + C+A +  G ++AT S  GT I+VWD 
Sbjct: 4  TLKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDL 38

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG0271|consensus	480		99.58
KOG0272|consensus	459		99.56
KOG0263|consensus	707		99.55
KOG2110|consensus	391		99.49
KOG0266|consensus	456		99.48
KOG0273|consensus	524		99.47
KOG0269|consensus	839		99.38
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.38
KOG0295|consensus	406		99.36
KOG2111|consensus	346		99.33
PTZ00421	493	coronin; Provisional	99.33
KOG0272|consensus	459		99.31
KOG0315|consensus	311		99.31
KOG0271|consensus	480		99.31
KOG0286|consensus	343		99.29
KOG0264|consensus	422		99.29
KOG0286|consensus	343		99.28
KOG0291|consensus	893		99.23
KOG0279|consensus	315		99.22
KOG0266|consensus	456		99.21
KOG0282|consensus	503		99.19
PTZ00421	493	coronin; Provisional	99.17
KOG0319|consensus	775		99.16
KOG0284|consensus	464		99.14
KOG0289|consensus	506		99.13
KOG1407|consensus	313		99.12
PTZ00420	568	coronin; Provisional	99.12
PLN00181	793	protein SPA1-RELATED; Provisional	99.11
KOG1273|consensus	405		99.11
KOG0316|consensus	307		99.1
KOG0318|consensus	603		99.1
KOG0302|consensus	440		99.09
KOG0645|consensus	312		99.08
KOG0285|consensus	460		99.08
KOG0315|consensus	311		99.08
KOG0263|consensus	707		99.07
KOG0308|consensus	735		99.06
KOG0265|consensus	338		99.06
KOG0647|consensus	347		99.05
KOG1539|consensus	910		99.04
KOG0285|consensus	460		99.04
KOG0296|consensus	399		99.03
PTZ00420	568	coronin; Provisional	99.02
KOG0649|consensus	325		99.01
KOG0639|consensus	705		99.0
KOG0278|consensus	334		98.97
KOG0319|consensus	775		98.97
KOG0281|consensus	499		98.96
KOG0316|consensus	307		98.96
KOG0279|consensus	315		98.96
KOG0267|consensus	825		98.94
KOG0274|consensus	537		98.94
KOG1445|consensus	1012		98.93
KOG0277|consensus	311		98.92
KOG0265|consensus	338		98.92
KOG0303|consensus	472		98.92
KOG0274|consensus	537		98.92
KOG0643|consensus	327		98.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.9
KOG0293|consensus	519		98.9
KOG4283|consensus	397		98.89
KOG0306|consensus	888		98.89
KOG0275|consensus	508		98.88
KOG0291|consensus	893		98.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.88
KOG0273|consensus	524		98.87
KOG0276|consensus	794		98.87
KOG0650|consensus	733		98.87
KOG0284|consensus	464		98.86
KOG1446|consensus	311		98.84
KOG0292|consensus	1202		98.83
KOG0264|consensus	422		98.83
KOG1407|consensus	313		98.81
KOG0277|consensus	311		98.8
KOG0275|consensus	508		98.79
KOG0281|consensus	499		98.78
KOG0302|consensus	440		98.78
KOG0276|consensus	794		98.77
KOG2394|consensus	636		98.77
KOG0310|consensus	487		98.76
KOG0283|consensus	712		98.76
KOG0645|consensus	312		98.76
KOG0307|consensus	1049		98.72
KOG0294|consensus	362		98.72
KOG0288|consensus	459		98.71
KOG0310|consensus	487		98.71
KOG2096|consensus	420		98.7
KOG0772|consensus	641		98.69
KOG0295|consensus	406		98.69
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.68
KOG0296|consensus	399		98.67
KOG0305|consensus	484		98.66
PLN00181	793	protein SPA1-RELATED; Provisional	98.65
KOG0305|consensus	484		98.65
KOG0283|consensus	712		98.64
KOG1332|consensus	299		98.62
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.62
KOG1034|consensus	385		98.62
KOG0293|consensus	519		98.61
KOG0639|consensus	705		98.61
KOG0647|consensus	347		98.6
KOG0313|consensus	423		98.6
KOG0278|consensus	334		98.58
KOG0282|consensus	503		98.58
KOG0268|consensus	433		98.57
KOG0646|consensus	476		98.57
KOG0308|consensus	735		98.57
KOG0640|consensus	430		98.55
KOG0270|consensus	463		98.55
KOG0318|consensus	603		98.55
KOG0973|consensus	942		98.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.53
KOG1034|consensus	385		98.5
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.5
KOG1274|consensus	933		98.48
KOG0300|consensus	481		98.47
KOG0299|consensus	479		98.47
KOG0267|consensus	825		98.46
KOG0641|consensus	350		98.45
KOG1272|consensus	545		98.45
KOG0289|consensus	506		98.44
KOG0294|consensus	362		98.44
KOG0290|consensus	364		98.42
KOG0642|consensus	577		98.42
KOG1007|consensus	370		98.41
KOG0268|consensus	433		98.4
KOG1538|consensus	1081		98.4
KOG0643|consensus	327		98.39
KOG1445|consensus	1012		98.38
KOG0313|consensus	423		98.37
KOG1009|consensus	434		98.37
KOG1446|consensus	311		98.36
KOG0646|consensus	476		98.36
KOG0771|consensus	398		98.35
KOG0299|consensus	479		98.34
KOG0640|consensus	430		98.34
KOG0269|consensus	839		98.33
KOG0292|consensus	1202		98.32
KOG0290|consensus	364		98.31
KOG2096|consensus	420		98.3
KOG2139|consensus	445		98.29
KOG0641|consensus	350		98.29
KOG0306|consensus	888		98.28
KOG0300|consensus	481		98.27
KOG1310|consensus	758		98.27
KOG2048|consensus	691		98.23
COG2319	466	FOG: WD40 repeat [General function prediction only	98.2
KOG0973|consensus	942		98.19
KOG1188|consensus	376		98.18
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.18
KOG0288|consensus	459		98.18
KOG4328|consensus	498		98.16
KOG0322|consensus	323		98.14
KOG1009|consensus	434		98.13
KOG1273|consensus	405		98.11
COG2319	466	FOG: WD40 repeat [General function prediction only	98.1
KOG1063|consensus	764		98.1
KOG2445|consensus	361		98.1
KOG0303|consensus	472		98.07
KOG0270|consensus	463		98.05
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.03
KOG1332|consensus	299		98.02
KOG1408|consensus	1080		98.02
KOG0974|consensus	967		98.01
KOG2111|consensus	346		98.0
KOG1036|consensus	323		97.96
KOG4378|consensus	673		97.96
KOG0301|consensus	745		97.95
KOG1007|consensus	370		97.95
KOG1524|consensus	737		97.94
KOG0772|consensus	641		97.93
KOG1188|consensus	376		97.93
KOG2394|consensus	636		97.91
KOG1036|consensus	323		97.87
KOG4547|consensus	541		97.85
KOG0301|consensus	745		97.84
KOG1274|consensus	933		97.83
KOG1524|consensus	737		97.83
KOG4328|consensus	498		97.82
KOG1408|consensus	1080		97.81
KOG4283|consensus	397		97.73
KOG4714|consensus	319		97.71
KOG2919|consensus	406		97.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.67
KOG0644|consensus	1113		97.66
KOG0644|consensus	1113		97.66
KOG0322|consensus	323		97.65
KOG1063|consensus	764		97.64
KOG4640|consensus	665		97.63
KOG2919|consensus	406		97.63
KOG0321|consensus	720		97.62
KOG3881|consensus	412		97.58
KOG4497|consensus	447		97.57
KOG1539|consensus	910		97.56
PRK01742	429	tolB translocation protein TolB; Provisional	97.52
KOG1587|consensus	555		97.5
KOG2106|consensus	626		97.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.48
KOG3881|consensus	412		97.46
KOG0307|consensus	1049		97.45
KOG2695|consensus	425		97.44
KOG1912|consensus	1062		97.4
KOG1538|consensus	1081		97.32
KOG0280|consensus	339		97.31
KOG2139|consensus	445		97.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.29
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.28
KOG3914|consensus	390		97.25
KOG0321|consensus	720		97.23
KOG4378|consensus	673		97.23
KOG2445|consensus	361		97.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.19
PRK05137	435	tolB translocation protein TolB; Provisional	97.19
KOG2079|consensus	1206		97.17
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	97.15
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.14
KOG2321|consensus	703		97.11
KOG0649|consensus	325		97.09
KOG1645|consensus	463		97.07
KOG2695|consensus	425		97.05
KOG1963|consensus	792		97.0
KOG4227|consensus	609		96.98
KOG1409|consensus	404		96.97
PRK01742	429	tolB translocation protein TolB; Provisional	96.95
PRK04922	433	tolB translocation protein TolB; Provisional	96.95
KOG2048|consensus	691		96.86
PRK02889	427	tolB translocation protein TolB; Provisional	96.85
KOG1334|consensus	559		96.85
KOG0771|consensus	398		96.84
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.84
KOG2110|consensus	391		96.8
KOG0642|consensus	577		96.79
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.69
KOG2055|consensus	514		96.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.64
KOG1240|consensus	1431		96.63
KOG0280|consensus	339		96.62
KOG1645|consensus	463		96.61
KOG1523|consensus	361		96.58
PRK03629	429	tolB translocation protein TolB; Provisional	96.56
KOG1064|consensus	2439		96.49
KOG1310|consensus	758		96.47
KOG1523|consensus	361		96.46
PRK03629	429	tolB translocation protein TolB; Provisional	96.46
PRK05137	435	tolB translocation protein TolB; Provisional	96.38
PRK11028	330	6-phosphogluconolactonase; Provisional	96.37
KOG2106|consensus	626		96.33
KOG1587|consensus	555		96.32
KOG3914|consensus	390		96.31
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.3
PRK04922	433	tolB translocation protein TolB; Provisional	96.23
KOG1963|consensus	792		96.16
PRK00178	430	tolB translocation protein TolB; Provisional	96.16
KOG0974|consensus	967		96.12
KOG2315|consensus	566		96.11
PRK02889	427	tolB translocation protein TolB; Provisional	96.03
KOG1832|consensus	1516		96.01
KOG4532|consensus	344		96.01
PRK01029	428	tolB translocation protein TolB; Provisional	96.0
PRK11028	330	6-phosphogluconolactonase; Provisional	95.92
PRK00178	430	tolB translocation protein TolB; Provisional	95.87
KOG4547|consensus	541		95.79
KOG0650|consensus	733		95.73
KOG4190|consensus	1034		95.73
KOG1517|consensus	1387		95.6
KOG2055|consensus	514		95.6
KOG2315|consensus	566		95.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.55
KOG4190|consensus	1034		95.53
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.49
KOG2321|consensus	703		95.33
PRK04792	448	tolB translocation protein TolB; Provisional	95.07
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.02
KOG4227|consensus	609		95.01
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.01
PRK01029	428	tolB translocation protein TolB; Provisional	94.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.74
KOG1517|consensus	1387		94.63
PRK04792	448	tolB translocation protein TolB; Provisional	94.6
COG4946	668	Uncharacterized protein related to the periplasmic	94.54
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	94.52
KOG0882|consensus	558		94.26
KOG2314|consensus	698		93.97
KOG0309|consensus	1081		93.9
KOG0309|consensus	1081		93.75
KOG4497|consensus	447		93.71
KOG1409|consensus	404		93.7
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.58
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	93.56
KOG1240|consensus	1431		93.31
KOG1354|consensus	433		92.89
KOG3621|consensus	726		92.86
KOG1916|consensus	1283		92.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	92.69
KOG1334|consensus	559		92.68
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.64
PRK02888	635	nitrous-oxide reductase; Validated	92.53
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	92.51
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	92.47
KOG1354|consensus	433		92.42
KOG3617|consensus	1416		92.37
KOG1275|consensus	1118		92.29
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.28
KOG2314|consensus	698		92.23
PRK04043	419	tolB translocation protein TolB; Provisional	92.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	91.91
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.72
KOG2066|consensus	846		91.6
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	91.32
KOG4532|consensus	344		91.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.72
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.54
KOG1064|consensus	2439		90.5
KOG2041|consensus	1189		89.68
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.6
KOG2066|consensus	846		89.59
COG4946	668	Uncharacterized protein related to the periplasmic	89.32
KOG4499|consensus	310		89.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	88.72
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	88.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	87.95
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	86.92
KOG1272|consensus	545		86.76
KOG1912|consensus	1062		86.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.25
KOG2377|consensus	657		86.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.83
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	85.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	85.69
KOG0882|consensus	558		85.59
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	85.58
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	84.88
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	83.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	83.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	83.19
KOG2109|consensus	788		82.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	81.61
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	80.99
KOG2114|consensus	933		80.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.67
KOG1275|consensus	1118		80.09

>KOG0271|consensus

Probab=99.58  E-value=4.9e-15  Score=95.89  Aligned_cols=69  Identities=30%  Similarity=0.489  Sum_probs=62.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE-EEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL-VELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~-~~~~~~~~~~~-~~w   78 (78)
                      .+. +||+....     +.++..+|.+.|.||+|+|||+.||+|+.||+ |++||..+|+++ ..+++|.+.++ |+|
T Consensus       138 TvR-~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~-I~lwdpktg~~~g~~l~gH~K~It~Law  208 (480)
T KOG0271|consen  138 TVR-LWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS-IRLWDPKTGQQIGRALRGHKKWITALAW  208 (480)
T ss_pred             eEE-eeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCe-EEEecCCCCCcccccccCcccceeEEee
Confidence            356 89998877     89999999999999999999999999999999 999999998766 88899999887 777

>KOG0272|consensus

Probab=99.56  E-value=6e-15  Score=95.97  Aligned_cols=63  Identities=25%  Similarity=0.375  Sum_probs=59.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      |||++++.     ++..|.+|..+|.+|+|+|+|..||||+.|++ ++|||++..+.++.+++|.+-++
T Consensus       329 vWDlRtgr-----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipAH~nlVS  391 (459)
T KOG0272|consen  329 VWDLRTGR-----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPAHSNLVS  391 (459)
T ss_pred             eeecccCc-----EEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecccccchhh
Confidence            89999987     99999999999999999999999999999999 99999999999999999987654

>KOG0263|consensus

Probab=99.55  E-value=1.3e-14  Score=99.14  Aligned_cols=65  Identities=20%  Similarity=0.388  Sum_probs=60.9

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      |++ +||+.++.     .++.|.||.++|.+++|||+|.+|++|++|+. |.+||+.+|+.+..+.+|.+.+
T Consensus       558 tVR-lWDv~~G~-----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~~~v~~l~~Ht~ti  622 (707)
T KOG0263|consen  558 TVR-LWDVSTGN-----SVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLANGSLVKQLKGHTGTI  622 (707)
T ss_pred             eEE-EEEcCCCc-----EEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCCCcchhhhhcccCce
Confidence            688 99999987     89999999999999999999999999999999 9999999999999999886554

>KOG2110|consensus

Probab=99.49  E-value=2.8e-13  Score=87.12  Aligned_cols=68  Identities=43%  Similarity=0.621  Sum_probs=62.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+..     ...++.+|++++-+++|+++|++|||+|+.|++||||.+.+|..+.+|+++..+++++
T Consensus       155 V~-l~d~~nl~-----~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy  222 (391)
T KOG2110|consen  155 VV-LFDTINLQ-----PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY  222 (391)
T ss_pred             EE-EEEcccce-----eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE
Confidence            45 88988876     8889999999999999999999999999999999999999999999999998888764

>KOG0266|consensus

Probab=99.48  E-value=3.8e-13  Score=89.36  Aligned_cols=67  Identities=24%  Similarity=0.417  Sum_probs=60.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +. +||+....    .+++++.+|...|++++|+|+|+.+++|+.|++ |+|||++++++...+.+|.++++.
T Consensus       227 ir-iwd~~~~~----~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t-vriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  227 LR-IWDLKDDG----RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT-VRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             EE-EeeccCCC----eEEEEecCCCCceEEEEecCCCCEEEEecCCCc-EEEEeccCCeEEEeeeccCCceEE
Confidence            56 89994432    489999999999999999999999999999999 999999999999999999998874

>KOG0273|consensus

Probab=99.47  E-value=2.7e-13  Score=89.40  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=63.9

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      .+. +||+..+.     ++++|..|+.+|++++|||+|+++|+|+.||. |.+|++++++..+.+.+......|||
T Consensus       433 tV~-lwdv~~gv-----~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~~~~Ifel~W  501 (524)
T KOG0273|consen  433 TVK-LWDVESGV-----PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTGKLVKSYQGTGGIFELCW  501 (524)
T ss_pred             eEE-EEEccCCc-----eeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccchheeEeecCCCeEEEEEE
Confidence            356 89998886     99999999999999999999999999999999 99999999999999998877778888

>KOG0269|consensus

Probab=99.38  E-value=1.2e-12  Score=90.16  Aligned_cols=70  Identities=20%  Similarity=0.403  Sum_probs=58.0

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeEEeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPATLYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~~~w   78 (78)
                      ||| +||+|+..    ++...+.+|.++|.|+.|+|++.+||||++|+. |+|||+.+++  ...++....--.+++|
T Consensus       200 ~lq-lWDlRqp~----r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tInTiapv~rVkW  271 (839)
T KOG0269|consen  200 YLQ-LWDLRQPD----RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTINTIAPVGRVKW  271 (839)
T ss_pred             eEE-EeeccCch----hHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEeecceeeeeee
Confidence            799 99999987    688889999999999999999999999999999 9999988653  4455554433344666

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.38  E-value=1.4e-12  Score=59.53  Aligned_cols=38  Identities=39%  Similarity=0.685  Sum_probs=36.0

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD   57 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d   57 (78)
                      ++.+++++|.++|++++|+|++++|++++.|+. |++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            367889999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0295|consensus

Probab=99.36  E-value=4.8e-12  Score=81.53  Aligned_cols=65  Identities=22%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+..+-     ++.++.+|.+.|..++|+|.|++|+++.+|++ +|+||+++++|..+++.|..-++
T Consensus       316 Ik-~wdv~tg~-----cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~ah~hfvt  380 (406)
T KOG0295|consen  316 IK-IWDVSTGM-----CLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEAHEHFVT  380 (406)
T ss_pred             EE-EEeccCCe-----EEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCCCcceeE
Confidence            46 89998775     99999999999999999999999999999999 99999999999999987755443

>KOG2111|consensus

Probab=99.33  E-value=1.7e-11  Score=77.86  Aligned_cols=70  Identities=56%  Similarity=0.826  Sum_probs=61.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +| |.|+......   ....+.+|.+.|.|++.+.+|+.+||+|..|+.|||||..+|..+.+++++.+.+.++
T Consensus       161 vQ-i~dL~~~~~~---~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  161 VQ-IVDLASTKPN---APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EE-EEEhhhcCcC---CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            57 7888776522   4677899999999999999999999999999999999999999999999988887753

>PTZ00421 coronin; Provisional

Probab=99.33  E-value=1.5e-11  Score=82.68  Aligned_cols=63  Identities=14%  Similarity=0.278  Sum_probs=56.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++ |||+.+..     ....+.+|.+.|.+++|+|+|+.|++++.|+. |++||++++..+..+.+|...
T Consensus       150 Vr-IWDl~tg~-----~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        150 VN-VWDVERGK-----AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EE-EEECCCCe-----EEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCCCC
Confidence            56 99998765     77888999999999999999999999999999 999999999998888877543

>KOG0272|consensus

Probab=99.31  E-value=2e-12  Score=84.43  Aligned_cols=62  Identities=19%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +||+.+..     ......||..+|.+++|.|||..++||+.|.. -||||+++|+++..+.+|.+++
T Consensus       287 lWD~~tk~-----ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~-~RvWDlRtgr~im~L~gH~k~I  348 (459)
T KOG0272|consen  287 LWDLETKS-----ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL-GRVWDLRTGRCIMFLAGHIKEI  348 (459)
T ss_pred             hcccccch-----hhHhhcccccccceeEecCCCceeeccCccch-hheeecccCcEEEEecccccce
Confidence            78888776     77777899999999999999999999999999 9999999999999999987775

>KOG0315|consensus

Probab=99.31  E-value=1.3e-11  Score=76.66  Aligned_cols=66  Identities=20%  Similarity=0.383  Sum_probs=56.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.++.+.   ++.+|.+|.+-|.+|.|..||+.++||++||+ ++|||+++-.+-+.++.. .|++
T Consensus        63 vR-lyD~~S~np~---Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt-~kIWdlR~~~~qR~~~~~-spVn  128 (311)
T KOG0315|consen   63 VR-LYDLNSNNPN---PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT-VKIWDLRSLSCQRNYQHN-SPVN  128 (311)
T ss_pred             eE-EEEccCCCCC---ceeEEeccCCceEEEEEeecCeEEEecCCCce-EEEEeccCcccchhccCC-CCcc
Confidence            56 8999988743   89999999999999999999999999999999 999999997776666654 4444

>KOG0271|consensus

Probab=99.31  E-value=3.1e-12  Score=83.13  Aligned_cols=59  Identities=20%  Similarity=0.387  Sum_probs=53.9

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +++..+.+|+..|+.+.||||++++|+++.|++ |++||.++|+.+..|++|-+++= +.|
T Consensus       358 kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRGHv~~VYqvaw  417 (480)
T KOG0271|consen  358 KPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRGHVAAVYQVAW  417 (480)
T ss_pred             cchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhhccceeEEEEe
Confidence            577778899999999999999999999999999 99999999999999999987763 665

>KOG0286|consensus

Probab=99.29  E-value=1.4e-11  Score=77.81  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=55.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .. +||++...     +.++|.+|..-|++|.|-|+|..+++|++|++ +|+||++....+..+++.
T Consensus       211 ak-lWD~R~~~-----c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~  270 (343)
T KOG0286|consen  211 AK-LWDVRSGQ-----CVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHD  270 (343)
T ss_pred             ee-eeeccCcc-----eeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccC
Confidence            45 99999987     99999999999999999999999999999999 999999998888888743

>KOG0264|consensus

Probab=99.29  E-value=1.9e-11  Score=79.89  Aligned_cols=71  Identities=27%  Similarity=0.455  Sum_probs=58.8

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK-KVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~~-~~w   78 (78)
                      +|. |||+|+.   ..++.+...+|.++|+|++|+| ++..|||||.|++ |.+||+|+ ..+++.+++|.+.+- +-|
T Consensus       251 ~L~-iwD~R~~---~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~W  324 (422)
T KOG0264|consen  251 KLM-IWDTRSN---TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEW  324 (422)
T ss_pred             eEE-EEEcCCC---CCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccCCCcceEEEEe
Confidence            567 9999973   2358888899999999999999 6788999999999 99999997 467888888876643 544

>KOG0286|consensus

Probab=99.28  E-value=2.1e-11  Score=77.01  Aligned_cols=63  Identities=11%  Similarity=0.282  Sum_probs=59.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +||+.++.     ....|.+|.+-|.+++++| +++.+++|+.|+. .++||++.+.+.+.|++|..-++
T Consensus       170 lWDie~g~-----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~~~c~qtF~ghesDIN  233 (343)
T KOG0286|consen  170 LWDIETGQ-----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRSGQCVQTFEGHESDIN  233 (343)
T ss_pred             EEEcccce-----EEEEecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccCcceeEeecccccccc
Confidence            89999886     8999999999999999999 9999999999999 99999999999999999876654

>KOG0291|consensus

Probab=99.23  E-value=6.2e-11  Score=81.95  Aligned_cols=63  Identities=22%  Similarity=0.401  Sum_probs=57.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +|+.+...     .+..-++|...++++++||||.++|||++||. |+|||..+|-|..+|..|...++
T Consensus       334 VweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK-VKvWn~~SgfC~vTFteHts~Vt  396 (893)
T KOG0291|consen  334 VWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGK-VKVWNTQSGFCFVTFTEHTSGVT  396 (893)
T ss_pred             EEEeeccc-----eeeeccccccceeeEEECCCCcEEEeccCCCc-EEEEeccCceEEEEeccCCCceE
Confidence            78877765     77777899999999999999999999999999 99999999999999999888776

>KOG0279|consensus

Probab=99.22  E-value=6.5e-11  Score=74.33  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=57.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      ++ +||+++.+     ..+++.+|++.++.+++||||...++|++||. +.+||++.++.++.+++......|
T Consensus       174 vK-vWnl~~~~-----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~a~~~v~sl  239 (315)
T KOG0279|consen  174 VK-VWNLRNCQ-----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLEAFDIVNSL  239 (315)
T ss_pred             EE-EEccCCcc-----hhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEeccCCCeEeeE
Confidence            56 89998876     88899999999999999999999999999999 999999999998888765433334

>KOG0266|consensus

Probab=99.21  E-value=1.1e-10  Score=77.70  Aligned_cols=63  Identities=27%  Similarity=0.431  Sum_probs=56.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~   73 (78)
                      +. +||++..+     +..++.+|+++|++++|+++|+.|++++.|+. |++||+.++.  ++..+.++..+
T Consensus       270 vr-iWd~~~~~-----~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~  334 (456)
T KOG0266|consen  270 VR-IWDVRTGE-----CVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IRVWDLETGSKLCLKLLSGAENS  334 (456)
T ss_pred             EE-EEeccCCe-----EEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EEEEECCCCceeeeecccCCCCC
Confidence            45 99999865     99999999999999999999999999999999 9999999999  56777766555

>KOG0282|consensus

Probab=99.19  E-value=2.9e-11  Score=79.96  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +. ||+++...    +++++|.+|..+|..++|+++|+.+.+++.|+. +++||+++|.++..+....-+.
T Consensus       239 vk-lW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~-lKlwDtETG~~~~~f~~~~~~~  303 (503)
T KOG0282|consen  239 VK-LWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF-LKLWDTETGQVLSRFHLDKVPT  303 (503)
T ss_pred             EE-EEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeeccee-eeeeccccceEEEEEecCCCce
Confidence            45 89998833    599999999999999999999999999999999 9999999999999887655443

>PTZ00421 coronin; Provisional

Probab=99.17  E-value=5.6e-10  Score=75.20  Aligned_cols=73  Identities=19%  Similarity=0.391  Sum_probs=59.0

Q ss_pred             eeeEEEcccCCc--CCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTEL--SSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~--~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+.....  .....+.++.+|...|.+++|+|++ +.|++++.|+. |++||++++..+..+..|.+.+. +.|
T Consensus       100 Ik-IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt-VrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421        100 IM-GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV-VNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             EE-EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE-EEEEECCCCeEEEEEcCCCCceEEEEE
Confidence            45 899875431  1224677899999999999999986 69999999999 99999999999999988877665 554

>KOG0319|consensus

Probab=99.16  E-value=1.2e-10  Score=80.09  Aligned_cols=64  Identities=16%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      ++ ||++.+..     ...++.+|+-.|.+|.|+|..+.++|+|.|++ |+||.+.+.+|+.++++|...+
T Consensus       487 aK-iW~le~~~-----l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eGH~~aV  550 (775)
T KOG0319|consen  487 AK-IWDLEQLR-----LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEGHTSAV  550 (775)
T ss_pred             ee-eecccCce-----EEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecCcccee
Confidence            45 89988665     99999999999999999999999999999999 9999999999999999987553

>KOG0284|consensus

Probab=99.14  E-value=2.2e-11  Score=79.44  Aligned_cols=68  Identities=22%  Similarity=0.355  Sum_probs=60.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ +||-++++     |+.++.+|++.|..+.|+|+|++|+|+|+|.. ++++|+++-+.++.+++|.+-++ +.|
T Consensus       246 VK-lWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~Hkkdv~~~~W  314 (464)
T KOG0284|consen  246 VK-LWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRGHKKDVTSLTW  314 (464)
T ss_pred             eE-eecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhcchhhheeecc
Confidence            56 89999887     99999999999999999999999999999999 99999998788888898876654 555

>KOG0289|consensus

Probab=99.13  E-value=1.6e-10  Score=76.04  Aligned_cols=58  Identities=21%  Similarity=0.449  Sum_probs=51.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. +||+.+..     .+..|++|.++|.+|+|+.+|.+|+++.+|+. |++||+|.-+...++.
T Consensus       371 vk-iwdlks~~-----~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  371 VK-IWDLKSQT-----NVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EE-EEEcCCcc-----ccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceee
Confidence            45 89998876     88899999999999999999999999999999 9999999766555544

>KOG1407|consensus

Probab=99.12  E-value=2.3e-10  Score=71.55  Aligned_cols=66  Identities=18%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +||+...-     |.++|..+.-||..++||.||++||++|+|.. |-|=++.+|..+.+++......++.|
T Consensus       215 LWD~~ELi-----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~~~~~t~tVAW  280 (313)
T KOG1407|consen  215 LWDVDELI-----CERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIPCEGPTFTVAW  280 (313)
T ss_pred             ccChhHhh-----hheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEeeccCCceeEEe
Confidence            89998887     99999999999999999999999999999999 99999999999999998777777887

>PTZ00420 coronin; Provisional

Probab=99.12  E-value=9.5e-10  Score=75.13  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++ +||+++..     ....+. |...|.+++|+|+|+.|++++.|+. |++||++++..+.++.+|...
T Consensus       150 Ir-IWDl~tg~-----~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~gH~g~  211 (568)
T PTZ00420        150 VN-IWDIENEK-----RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHIHDGG  211 (568)
T ss_pred             EE-EEECCCCc-----EEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEecccCC
Confidence            56 89998765     555564 5678999999999999999999999 999999999999999887654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.11  E-value=9e-10  Score=77.21  Aligned_cols=62  Identities=15%  Similarity=0.392  Sum_probs=53.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +. +||+.+..     ....+.+|.+.|.+++|+| ++++|++++.|+. |++||++++..+..+..+..
T Consensus       557 v~-lWd~~~~~-----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~-v~iWd~~~~~~~~~~~~~~~  619 (793)
T PLN00181        557 VQ-VWDVARSQ-----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS-VKLWSINQGVSIGTIKTKAN  619 (793)
T ss_pred             EE-EEECCCCe-----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE-EEEEECCCCcEEEEEecCCC
Confidence            56 89987654     7788899999999999997 8899999999999 99999999988887775543

>KOG1273|consensus

Probab=99.11  E-value=2.9e-10  Score=72.78  Aligned_cols=58  Identities=24%  Similarity=0.387  Sum_probs=53.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      |||..+..     ..+++.+|--||.|++||+||+.|+|+|.|.. |.+||+..|.+++.++-.
T Consensus        49 I~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   49 IYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             EEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeEEEcc
Confidence            89988876     88889999999999999999999999999999 999999999988888743

>KOG0316|consensus

Probab=99.10  E-value=2.8e-10  Score=70.55  Aligned_cols=62  Identities=18%  Similarity=0.387  Sum_probs=53.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~   72 (78)
                      +| +||+.++.     ..+.|++|.+.|+.|+|+.+.+.+++|+.|.+ +|+||.++.  ++++.+....+
T Consensus        83 v~-vwDV~TGk-----v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s-~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   83 VQ-VWDVNTGK-----VDRRFRGHLAQVNTVRFNEESSVVASGSFDSS-VRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             EE-EEEcccCe-----eeeecccccceeeEEEecCcceEEEeccccce-eEEEEcccCCCCccchhhhhcC
Confidence            57 99998886     99999999999999999999999999999999 999999976  45565554433

>KOG0318|consensus

Probab=99.10  E-value=8.6e-10  Score=74.00  Aligned_cols=60  Identities=23%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             EEEcccCCcCCCCCcEEec---CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTIN---AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~---~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +||-.+++     .+..|.   +|++.|.+++|+||++.++|++.|.+ ++|||+.+++++.++..+..
T Consensus       216 iyDGktge-----~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~  278 (603)
T KOG0318|consen  216 IYDGKTGE-----KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGST  278 (603)
T ss_pred             EEcCCCcc-----EEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCc
Confidence            56655555     666676   89999999999999999999999999 99999999999999986544

>KOG0302|consensus

Probab=99.09  E-value=7.8e-10  Score=71.89  Aligned_cols=71  Identities=21%  Similarity=0.472  Sum_probs=59.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC---CcEEEEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK---KVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~---~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++. |||+|+...   +......+|.+-|+.|+||..-.+||+|+.||+ ++|||++.   +.++..|..|..|++ +.|
T Consensus       281 sIr-IWDiRs~~~---~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW  355 (440)
T KOG0302|consen  281 SIR-IWDIRSGPK---KAAVSTKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEW  355 (440)
T ss_pred             eEE-EEEecCCCc---cceeEeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence            456 999998741   233334799999999999998889999999999 99999984   678899999999987 666

>KOG0645|consensus

Probab=99.08  E-value=8.8e-10  Score=69.15  Aligned_cols=63  Identities=19%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             cCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940          15 LSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        15 ~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w   78 (78)
                      ..+-+++.++.||.++|.|++||++|++||++++|++ |-||.+..+   .++..+..|.+-+. +.|
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS-VWiWe~deddEfec~aVL~~HtqDVK~V~W  158 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS-VWIWEIDEDDEFECIAVLQEHTQDVKHVIW  158 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe-EEEEEecCCCcEEEEeeeccccccccEEEE
Confidence            3445689999999999999999999999999999999 999988744   57788888876655 444

>KOG0285|consensus

Probab=99.08  E-value=9.6e-10  Score=71.31  Aligned_cols=65  Identities=18%  Similarity=0.342  Sum_probs=58.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||++...     .+.++.+|.++|.++.+.|-.-.+++++.|++ |++||++.|+-...+.+|...++
T Consensus       259 ~R-vWDiRtr~-----~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~agkt~~tlt~hkksvr  323 (460)
T KOG0285|consen  259 IR-VWDIRTRA-----SVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLRAGKTMITLTHHKKSVR  323 (460)
T ss_pred             EE-Eeeecccc-----eEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeeccCceeEeeecccceee
Confidence            45 89999987     99999999999999999997778999999999 99999999998888888777665

>KOG0315|consensus

Probab=99.08  E-value=8.1e-10  Score=68.86  Aligned_cols=64  Identities=20%  Similarity=0.213  Sum_probs=56.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ||.+.+.-    +....+.+|+..++..+||.||.+|+|++.|+. +++||++.++.++.+.+|+++..
T Consensus       241 iwn~~~~~----kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy~gh~K~~v  304 (311)
T KOG0315|consen  241 IWNTDDFF----KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQYQGHHKAAV  304 (311)
T ss_pred             EEecCCce----eeEEEeecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeecCCcccccE
Confidence            66665542    577788999999999999999999999999999 99999999999999999887654

>KOG0263|consensus

Probab=99.07  E-value=4.1e-10  Score=77.56  Aligned_cols=63  Identities=21%  Similarity=0.360  Sum_probs=58.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +|......     +.+.|.+|-+-+.|++|.|+..++++||.|.+ +|+||+.+|..++.|.+|..++.
T Consensus       519 LWs~d~~~-----PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  519 LWSTDHNK-----PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             eeecccCC-----chhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecCCCCceE
Confidence            67766654     88889999999999999999999999999999 99999999999999999999987

>KOG0308|consensus

Probab=99.06  E-value=8.1e-10  Score=75.50  Aligned_cols=63  Identities=27%  Similarity=0.395  Sum_probs=57.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      |+ +||=+...     .+..++||..-|..+..++||+.+++++.||+ ||+||+...+|+.++..|.+.
T Consensus       195 lr-~wDprt~~-----kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~vH~e~  257 (735)
T KOG0308|consen  195 LR-LWDPRTCK-----KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIVHKEG  257 (735)
T ss_pred             eE-Eecccccc-----ceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEeccCc
Confidence            56 88877765     78889999999999999999999999999999 999999999999999988766

>KOG0265|consensus

Probab=99.06  E-value=1e-09  Score=69.56  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +|.+..-+    +...++.+|++.|..+.|.+|++.+++++.|++ ++.||+++|++++++++|..-++.
T Consensus        73 LWnv~gdc----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~-v~~wD~~tG~~~rk~k~h~~~vNs  137 (338)
T KOG0265|consen   73 LWNVYGDC----ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT-VRGWDAETGKRIRKHKGHTSFVNS  137 (338)
T ss_pred             EEeccccc----cceeeeccccceeEeeeeccCCCEEEEecCCce-EEEEecccceeeehhccccceeee
Confidence            56665443    577788899999999999999999999999999 999999999999999999877764

>KOG0647|consensus

Probab=99.05  E-value=1.2e-09  Score=69.42  Aligned_cols=70  Identities=11%  Similarity=0.306  Sum_probs=56.8

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .+. +|++++...-   ..+....|.+||.+++|+.||+.+++|+.|+. +++||+.++ ++..+..|..+++ +.|
T Consensus        51 tVR-~wevq~~g~~---~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~-~k~wDL~S~-Q~~~v~~Hd~pvkt~~w  121 (347)
T KOG0647|consen   51 TVR-IWEVQNSGQL---VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ-AKLWDLASG-QVSQVAAHDAPVKTCHW  121 (347)
T ss_pred             ceE-EEEEecCCcc---cchhhhccCCCeEEEEEccCCceEEeeccCCc-eEEEEccCC-CeeeeeecccceeEEEE
Confidence            356 8999885322   23445679999999999999999999999999 999999999 5577888888887 444

>KOG1539|consensus

Probab=99.04  E-value=7.7e-10  Score=77.15  Aligned_cols=57  Identities=19%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++|+....     .++.|.+|++.|+...|||||++|++++.|++ ||+||+.++.++-.+.-
T Consensus       560 vvD~~t~k-----vvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~v  616 (910)
T KOG1539|consen  560 VVDVVTRK-----VVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLV  616 (910)
T ss_pred             EEEchhhh-----hhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEec
Confidence            56776554     88889999999999999999999999999999 99999999988766553

>KOG0285|consensus

Probab=99.04  E-value=4.8e-10  Score=72.70  Aligned_cols=65  Identities=26%  Similarity=0.421  Sum_probs=59.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ .||+..+.     .++.+.+|-..|.|++..|.-..|+|++.|.+ +|+||+++...+..+.+|..++.
T Consensus       217 VK-CwDLe~nk-----vIR~YhGHlS~V~~L~lhPTldvl~t~grDst-~RvWDiRtr~~V~~l~GH~~~V~  281 (460)
T KOG0285|consen  217 VK-CWDLEYNK-----VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST-IRVWDIRTRASVHVLSGHTNPVA  281 (460)
T ss_pred             eE-EEechhhh-----hHHHhccccceeEEEeccccceeEEecCCcce-EEEeeecccceEEEecCCCCcce
Confidence            35 79998886     88889999999999999999999999999999 99999999999999999988765

>KOG0296|consensus

Probab=99.03  E-value=2.9e-09  Score=68.92  Aligned_cols=57  Identities=21%  Similarity=0.365  Sum_probs=52.1

Q ss_pred             eEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+||+.+++     ....+.+|++.|.++.||.||++||||+.+|. |+||+..++.....+.
T Consensus        89 flW~~~~ge-----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~-v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   89 FLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGK-VLVFKVSTGGEQWKLD  145 (399)
T ss_pred             EEEEccCCc-----ceeEecCCCCceEEEEEccCceEEEecCCCcc-EEEEEcccCceEEEee
Confidence            489998887     88889999999999999999999999999999 9999999998777665

>PTZ00420 coronin; Provisional

Probab=99.02  E-value=3.7e-09  Score=72.33  Aligned_cols=58  Identities=22%  Similarity=0.414  Sum_probs=46.6

Q ss_pred             CcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCc--------EEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKV--------QLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~--------~~~~~~~~~~~~~-~~w   78 (78)
                      .+..+.+|.++|.+++|+|+ ++.|++|+.|+. |++||+.++.        .+..+.+|...++ +.|
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt-IrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf  133 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLT-IRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW  133 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe-EEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence            66788999999999999996 799999999999 9999998642        3345667766654 444

>KOG0649|consensus

Probab=99.01  E-value=1.2e-09  Score=68.14  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=53.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      .||+.++.     ..+++++|++.|.+++-......+.+|++||+ +|+||.++++++..++....+..+
T Consensus       140 ~~dlE~G~-----i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~l  203 (325)
T KOG0649|consen  140 QVDLEDGR-----IQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLL  203 (325)
T ss_pred             EEEecCCE-----EEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhc
Confidence            46888775     88999999999999988555557899999999 999999999999888765555443

>KOG0639|consensus

Probab=99.00  E-value=2.2e-10  Score=76.85  Aligned_cols=55  Identities=24%  Similarity=0.393  Sum_probs=50.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      |||+++..     .++.|++|.+...||..++||+.|.||+.|.+ +|.||++.++.+.+.
T Consensus       535 vwDLhnq~-----~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqh  589 (705)
T KOG0639|consen  535 VWDLHNQT-----LVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQH  589 (705)
T ss_pred             EEEcccce-----eeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhh
Confidence            89999987     99999999999999999999999999999999 999999998766443

>KOG0278|consensus

Probab=98.97  E-value=2.3e-09  Score=67.03  Aligned_cols=54  Identities=24%  Similarity=0.443  Sum_probs=44.9

Q ss_pred             ceeeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940           2 LYLQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus         2 ~~~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      .|+- -||..+.+     .+-.+ .+|-++|.|+.|+|||...++||+||+ ||+|.+..++
T Consensus       246 ~~~~-kfDy~Tge-----Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~  300 (334)
T KOG0278|consen  246 FKVY-KFDYNTGE-----EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGK  300 (334)
T ss_pred             eEEE-EEeccCCc-----eeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCC
Confidence            3555 67877766     44445 799999999999999999999999999 9999887664

>KOG0319|consensus

Probab=98.97  E-value=1.4e-09  Score=75.03  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      .++ ||.+.+.+     |.++|.||...|..+.|-.+|+.|++++.||- +++|+++++.|+.++..|.+.
T Consensus       528 TvK-IW~is~fS-----ClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  528 TVK-IWSISTFS-----CLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             eEE-EEEeccce-----eeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhhhccce
Confidence            367 99999988     99999999999999999999999999999999 999999999999999888664

>KOG0281|consensus

Probab=98.96  E-value=3.9e-10  Score=73.07  Aligned_cols=61  Identities=26%  Similarity=0.430  Sum_probs=54.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++ |||..+..     +.+.+.||.+.|.|+.|..  +.+++|+.|.+ |++||.++|+++.++.+|.+.
T Consensus       219 ik-iWD~n~~~-----c~~~L~GHtGSVLCLqyd~--rviisGSSDsT-vrvWDv~tge~l~tlihHcea  279 (499)
T KOG0281|consen  219 IK-IWDKNSLE-----CLKILTGHTGSVLCLQYDE--RVIVSGSSDST-VRVWDVNTGEPLNTLIHHCEA  279 (499)
T ss_pred             eE-EeccccHH-----HHHhhhcCCCcEEeeeccc--eEEEecCCCce-EEEEeccCCchhhHHhhhcce
Confidence            56 89988887     9999999999999998864  59999999999 999999999999998887654

>KOG0316|consensus

Probab=98.96  E-value=1.7e-09  Score=67.16  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +|....+.     +++++.+|..+|..++.+.|...+++++.|+. +.+||+++|+.++.+++|...++
T Consensus        41 vr-LWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~-v~vwDV~TGkv~Rr~rgH~aqVN  105 (307)
T KOG0316|consen   41 VR-LWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKA-VQVWDVNTGKVDRRFRGHLAQVN  105 (307)
T ss_pred             EE-eecccccc-----eeeeecCCCceeeeccccccccccccCCCCce-EEEEEcccCeeeeecccccceee
Confidence            44 67766665     99999999999999999999999999999998 99999999999999999987766

>KOG0279|consensus

Probab=98.96  E-value=5e-09  Score=66.01  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +|++..-+..-...++.|.+|...|..++.++||++.++++.|++ +|+||+.+|+..+.|.+|...+
T Consensus        42 ~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~-lrlWDl~~g~~t~~f~GH~~dV  108 (315)
T KOG0279|consen   42 VWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT-LRLWDLATGESTRRFVGHTKDV  108 (315)
T ss_pred             EEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce-EEEEEecCCcEEEEEEecCCce
Confidence            677766554444678899999999999999999999999999999 9999999999999999887544

>KOG0267|consensus

Probab=98.94  E-value=1.4e-09  Score=75.13  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=56.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +||++..+     |.+.+.+|...+.+++|+|+|.+++++++|.+ ++|||..-|+.+.+|+.|...+
T Consensus       138 iwD~Rk~G-----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~~e~~v  199 (825)
T KOG0267|consen  138 IWDIRKKG-----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKSHEGKV  199 (825)
T ss_pred             ehhhhccC-----ceeeecCCcceeEEEeecCCCceeeccCCcce-eeeecccccccccccccccccc
Confidence            89999776     99999999999999999999999999999999 9999999999999998765544

>KOG0274|consensus

Probab=98.94  E-value=5.6e-09  Score=71.07  Aligned_cols=63  Identities=19%  Similarity=0.385  Sum_probs=56.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +|++.++.     +++++.+|.++|+++..+  +..+++|+.|++ |++||+.++++++.+.+|...+.
T Consensus       313 Vk-VW~v~n~~-----~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~-v~VW~~~~~~cl~sl~gH~~~V~  375 (537)
T KOG0274|consen  313 VK-VWDVTNGA-----CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT-VKVWDPRTGKCLKSLSGHTGRVY  375 (537)
T ss_pred             EE-EEeccCcc-----eEEEeccccccEEEEEec--CCEEEEEecCce-EEEEEhhhceeeeeecCCcceEE
Confidence            45 89998776     999999999999999988  789999999998 99999999999999999887665

>KOG1445|consensus

Probab=98.93  E-value=2.6e-09  Score=73.58  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .+. +||+++..     ....|.+|++.|..++|||||+.+|+.+.||. +|+|..++++.
T Consensus       701 Ti~-lWDl~~~~-----~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~  754 (1012)
T KOG1445|consen  701 TIE-LWDLANAK-----LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQ  754 (1012)
T ss_pred             eee-eeehhhhh-----hhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCC
Confidence            467 99999886     77789999999999999999999999999999 99999988753

>KOG0277|consensus

Probab=98.92  E-value=6.7e-09  Score=64.96  Aligned_cols=69  Identities=25%  Similarity=0.368  Sum_probs=55.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKK-VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~~-~~w   78 (78)
                      +++ +||++...     ....+..|..+|.|..|+. +.+.|+|++.|+. ||+||+++- .++.++.+|.-.++ ++|
T Consensus       171 ~l~-lwdvr~~g-----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~gh~~AVRkvk~  242 (311)
T KOG0277|consen  171 TLR-LWDVRSPG-----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNGHGLAVRKVKF  242 (311)
T ss_pred             eEE-EEEecCCC-----ceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecCCceEEEEEec
Confidence            567 99998876     4455999999999999988 6789999999999 999999974 56777777765554 443

>KOG0265|consensus

Probab=98.92  E-value=4.3e-09  Score=66.82  Aligned_cols=60  Identities=22%  Similarity=0.406  Sum_probs=54.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----CcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK----KVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~   70 (78)
                      +| +||++++.     ..+++.+|.++|..++.+|+|.++.+-++|.+ +++||++.    .+++..+.+|
T Consensus       198 ik-vWd~r~~d-----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  198 IK-VWDLRKND-----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ee-eeccccCc-----ceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecc
Confidence            68 99999987     99999999999999999999999999999999 99999985    3567777764

>KOG0303|consensus

Probab=98.92  E-value=7.7e-09  Score=67.73  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=52.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +|++.+++     ...++. |.+.|.+++||.||++|+|.+.|+. |||||.+++..+.+-..|
T Consensus       156 v~-iWnv~tge-----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  156 VS-IWNVGTGE-----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EE-EEeccCCc-----eeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeecccc
Confidence            35 89998887     777777 9999999999999999999999999 999999999998877544

>KOG0274|consensus

Probab=98.92  E-value=9.9e-09  Score=69.88  Aligned_cols=67  Identities=22%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             eeeeEEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +++ +||..+..     ...+ +.+|.+.|.+++|...+..|++|+.|.+ +++||+.+|.|...+.+|...+.+
T Consensus       229 tl~-~~~~~~~~-----~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t-~rvWd~~sg~C~~~l~gh~stv~~  296 (537)
T KOG0274|consen  229 TLH-LWDLNNGY-----LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT-ERVWDCSTGECTHSLQGHTSSVRC  296 (537)
T ss_pred             eeE-Eeecccce-----EEEeeccCCCCCceeEEEecCCCEEEEEecCCc-EEeEecCCCcEEEEecCCCceEEE
Confidence            346 78877765     6666 9999999999999888899999999999 999999999999999998877663

>KOG0643|consensus

Probab=98.91  E-value=1.2e-08  Score=64.24  Aligned_cols=59  Identities=20%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      +|-..+++     .+-++.+|.+.|+|+..+.+.++++||+.|.+ +++||+.+|+++..++...
T Consensus        36 vw~s~nGe-----rlGty~GHtGavW~~Did~~s~~liTGSAD~t-~kLWDv~tGk~la~~k~~~   94 (327)
T KOG0643|consen   36 VWYSLNGE-----RLGTYDGHTGAVWCCDIDWDSKHLITGSADQT-AKLWDVETGKQLATWKTNS   94 (327)
T ss_pred             EEEecCCc-----eeeeecCCCceEEEEEecCCcceeeeccccce-eEEEEcCCCcEEEEeecCC
Confidence            56666666     89999999999999999999999999999999 9999999999999888653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.90  E-value=1.6e-08  Score=60.54  Aligned_cols=64  Identities=27%  Similarity=0.432  Sum_probs=53.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +. +||+++..     ....+..|..++.++.|+|+++.+++++.|+. +++||++++..+..+..+..++
T Consensus       159 i~-i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~i  222 (289)
T cd00200         159 IK-LWDLRTGK-----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRGHENGV  222 (289)
T ss_pred             EE-EEEccccc-----cceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhhcCCce
Confidence            45 88887654     77788899999999999999999999999999 9999999988888886555443

>KOG0293|consensus

Probab=98.90  E-value=3.7e-09  Score=69.60  Aligned_cols=69  Identities=9%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC--CCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG--SDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~~~~w   78 (78)
                      +|++-.-.  .-+..+++.+|..+|.-|.||||.++|++++.|.. +++||+.+|.+...++.+  -....++|
T Consensus       250 iw~v~~d~--~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~-~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  250 IWIVVYDV--HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV-LSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             EEEEecCc--ceeeeeeeecccCceEEEEECCCCCeEEecCchHh-eeeccCCcchhhhhcccCcCCCcceeEE
Confidence            55554433  13478899999999999999999999999999999 999999999999888865  23344776

>KOG4283|consensus

Probab=98.89  E-value=9.9e-09  Score=65.48  Aligned_cols=61  Identities=21%  Similarity=0.368  Sum_probs=51.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCC-cEEEEeeCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKK-VQLVELRRG   70 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~   70 (78)
                      .++ +.|+.+++     ..+++.+|.+.|.+|.|+|... .|++|+.||. ||+||++.. .+...+..|
T Consensus       169 ~Vr-LCDi~SGs-----~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  169 QVR-LCDIASGS-----FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             cEE-EEeccCCc-----ceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecccceeEEeecc
Confidence            367 88999887     9999999999999999999665 6789999999 999999975 455555443

>KOG0306|consensus

Probab=98.89  E-value=5.4e-09  Score=72.61  Aligned_cols=65  Identities=32%  Similarity=0.473  Sum_probs=58.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +| ||+..+.+     ...+|.+|+..|+++.|+.+|..|++||.|+. |.+||+-...-+..+++|.+.++
T Consensus        89 Vq-if~~~s~~-----~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~-IIvwDlV~E~Gl~rL~GHkd~iT  153 (888)
T KOG0306|consen   89 VQ-IFSLESEE-----ILITFNGHKAAVTTLKFDKIGTRLASGSKDTD-IIVWDLVGEEGLFRLRGHKDSIT  153 (888)
T ss_pred             EE-eeccCCCc-----eeeeecccccceEEEEEcccCceEeecCCCcc-EEEEEeccceeeEEeecchHHHh
Confidence            46 78877665     88899999999999999999999999999999 99999998888899999877654

>KOG0275|consensus

Probab=98.88  E-value=5.7e-10  Score=71.93  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=60.4

Q ss_pred             eeeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +++ +|.++++.     |++.|. +|...|.|+.||.|++.+.+++.|.+ +|+.-+.+|+++.++++|+..++
T Consensus       286 kIK-vWri~tG~-----ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  286 KIK-VWRIETGQ-----CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cEE-EEEEecch-----HHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccchhHHHhcCcccccc
Confidence            456 89999887     988897 99999999999999999999999999 99999999999999999976654

>KOG0291|consensus

Probab=98.88  E-value=9.8e-09  Score=71.39  Aligned_cols=49  Identities=18%  Similarity=0.435  Sum_probs=45.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +|+++++.     ..-.+.||.+||.+++|+|+|+.|+++|-|.+ ||+||+-+.
T Consensus       462 vWS~qTGq-----llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s  510 (893)
T KOG0291|consen  462 VWSVQTGQ-----LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSS  510 (893)
T ss_pred             EEEeecCe-----eeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeecc
Confidence            88988876     88889999999999999999999999999999 999997654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.88  E-value=1e-08  Score=61.37  Aligned_cols=56  Identities=30%  Similarity=0.553  Sum_probs=48.2

Q ss_pred             EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe-EEeC
Q psy1940          22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA-TLYW   78 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-~~~w   78 (78)
                      +++.+|.++|.+++|+|+++.|++++.|+. +++||+.++.....+..+..++ .+.|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~-i~i~~~~~~~~~~~~~~~~~~i~~~~~   59 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGT-IKVWDLETGELLRTLKGHTGPVRDVAA   59 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcE-EEEEEeeCCCcEEEEecCCcceeEEEE
Confidence            457799999999999999999999999999 9999999888878887777666 4543

>KOG0273|consensus

Probab=98.87  E-value=1.1e-08  Score=68.05  Aligned_cols=58  Identities=24%  Similarity=0.404  Sum_probs=53.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC-eEEeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP-ATLYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~~~~w   78 (78)
                      ...+|..|++||.++.|+.+|++|++++.|++ +.+||..+|.+-+.++-|..+ ..+-|
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t-tilwd~~~g~~~q~f~~~s~~~lDVdW  326 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGT-TILWDAHTGTVKQQFEFHSAPALDVDW  326 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCcc-EEEEeccCceEEEeeeeccCCccceEE
Confidence            78888999999999999999999999999999 999999999999999888887 55666

>KOG0276|consensus

Probab=98.87  E-value=1e-08  Score=70.31  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      .++ +||-.+.=    .+.++|.+|.-.|.+|+|+| |.+.+|+++.|++ |+||.+.+..+..++++|...+++
T Consensus       120 ~iK-lW~we~~w----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWslgs~~~nfTl~gHekGVN~  188 (794)
T KOG0276|consen  120 TIK-LWDWENEW----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWSLGSPHPNFTLEGHEKGVNC  188 (794)
T ss_pred             EEE-EeeccCce----eeeeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEEcCCCCCceeeeccccCcce
Confidence            356 77765543    48999999999999999999 7789999999999 999999999999999999888873

>KOG0650|consensus

Probab=98.87  E-value=1.2e-08  Score=69.63  Aligned_cols=59  Identities=17%  Similarity=0.446  Sum_probs=53.4

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      .+...+++|++.+.+|+-.|.|..|++|+.||+ +|||.+.+|+|++.+........+.|
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGt-vriWEi~TgRcvr~~~~d~~I~~vaw  449 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGT-VRIWEIATGRCVRTVQFDSEIRSVAW  449 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCc-EEEEEeecceEEEEEeecceeEEEEe
Confidence            367788999999999999999999999999999 99999999999999987766666766

>KOG0284|consensus

Probab=98.86  E-value=3.7e-09  Score=69.31  Aligned_cols=65  Identities=15%  Similarity=0.289  Sum_probs=57.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. |||.....     .-..+++|.--|.++.|.|.-..+++++.|.. |++||.++|.++.++.+|+..+-
T Consensus       204 ik-iWdf~~~k-----ee~vL~GHgwdVksvdWHP~kgLiasgskDnl-VKlWDprSg~cl~tlh~HKntVl  268 (464)
T KOG0284|consen  204 IK-IWDFRMPK-----EERVLRGHGWDVKSVDWHPTKGLIASGSKDNL-VKLWDPRSGSCLATLHGHKNTVL  268 (464)
T ss_pred             EE-EEeccCCc-----hhheeccCCCCcceeccCCccceeEEccCCce-eEeecCCCcchhhhhhhccceEE
Confidence            35 88887765     66778999999999999999999999999998 99999999999999998887654

>KOG1446|consensus

Probab=98.84  E-value=1.9e-08  Score=63.94  Aligned_cols=50  Identities=18%  Similarity=0.206  Sum_probs=44.7

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +.++.|.||+..|++++.+|.+..+++++.|++ ||+||++..++...+.-
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t-vrLWDlR~~~cqg~l~~  140 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT-VRLWDLRVKKCQGLLNL  140 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCe-EEeeEecCCCCceEEec
Confidence            499999999999999999999999999999999 99999997766555543

>KOG0292|consensus

Probab=98.83  E-value=3.4e-09  Score=74.82  Aligned_cols=65  Identities=15%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +| +||-+=..     ++..|..|.+||..|.|.|++-.+++|+.|-. |++|+..+.+|+.++.+|.+.++
T Consensus        33 IQ-lWDYRM~t-----li~rFdeHdGpVRgv~FH~~qplFVSGGDDyk-IkVWnYk~rrclftL~GHlDYVR   97 (1202)
T KOG0292|consen   33 IQ-LWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK-IKVWNYKTRRCLFTLLGHLDYVR   97 (1202)
T ss_pred             ee-eehhhhhh-----HHhhhhccCCccceeeecCCCCeEEecCCccE-EEEEecccceehhhhccccceeE
Confidence            58 99988665     99999999999999999999999999999999 99999999999999999988776

>KOG0264|consensus

Probab=98.83  E-value=1.5e-08  Score=66.67  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=47.2

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +++ +||+|+..    ++.+++.+|++.|.+|.|||. .+.||+++.|+. +.+||+..
T Consensus       296 tV~-LwDlRnL~----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~  348 (422)
T KOG0264|consen  296 TVA-LWDLRNLN----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSR  348 (422)
T ss_pred             cEE-Eeechhcc----cCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccc
Confidence            467 99999987    699999999999999999994 579999999999 99999874

>KOG1407|consensus

Probab=98.81  E-value=1.2e-08  Score=64.04  Aligned_cols=57  Identities=23%  Similarity=0.362  Sum_probs=50.9

Q ss_pred             CCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          18 SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        18 ~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      -+.++++++|.....||.|+|+|++||+|+.|.. +.+||+..--|++.+.+..-|++
T Consensus       179 Lkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRldwpVR  235 (313)
T KOG1407|consen  179 LKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRLDWPVR  235 (313)
T ss_pred             cccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccccCceE
Confidence            3588999999999999999999999999999999 99999998888888887766665

>KOG0277|consensus

Probab=98.80  E-value=3.9e-08  Score=61.60  Aligned_cols=61  Identities=25%  Similarity=0.376  Sum_probs=49.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++ +||-....     .+++|.+|.+-|+..+|+| .++.++++|.|++ .++||++.......++.|.
T Consensus       129 iK-LW~~~r~~-----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~-l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  129 IK-LWDPNRPN-----SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT-LRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             eE-eecCCCCc-----ceEeecCCccEEEEEecCCCCCCeEEEccCCce-EEEEEecCCCceeEEEecc
Confidence            45 77755444     8999999999999999999 7899999999999 9999998643334477765

>KOG0275|consensus

Probab=98.79  E-value=6.3e-09  Score=67.21  Aligned_cols=52  Identities=23%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             CCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          18 SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        18 ~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .++.+.|++|...|+...|++||.++.+++.||+ |++|+..+++|+.+++..
T Consensus       338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             chhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhccCC
Confidence            3699999999999999999999999999999999 999999999999888743

>KOG0281|consensus

Probab=98.78  E-value=1.7e-09  Score=70.13  Aligned_cols=63  Identities=27%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +|++.+.+     .++++.+|+-.|-|+.+.  |+++++|+.|.+ ||+||+..|.+++.+++|.+-++
T Consensus       342 ik-vW~~st~e-----fvRtl~gHkRGIAClQYr--~rlvVSGSSDnt-IRlwdi~~G~cLRvLeGHEeLvR  404 (499)
T KOG0281|consen  342 IK-VWSTSTCE-----FVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVR  404 (499)
T ss_pred             EE-EEecccee-----eehhhhcccccceehhcc--CeEEEecCCCce-EEEEeccccHHHHHHhchHHhhh
Confidence            56 89988876     999999999999988765  789999999999 99999999999999998876544

>KOG0302|consensus

Probab=98.78  E-value=2.5e-08  Score=65.07  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=47.3

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ++. |||+++...+  +.+.+|.-|+.+|++|.|+| +.+.|++++.|.. |.+||+.-
T Consensus       325 t~~-iwDLR~~~~~--~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWDlsv  379 (440)
T KOG0302|consen  325 TLS-IWDLRQFKSG--QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWDLSV  379 (440)
T ss_pred             eEE-EEEhhhccCC--CcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEEeec
Confidence            567 9999998744  68999999999999999999 5678889999999 99999864

>KOG0276|consensus

Probab=98.77  E-value=9.1e-09  Score=70.52  Aligned_cols=65  Identities=20%  Similarity=0.387  Sum_probs=58.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC--CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG--TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg--~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +|.+.+..     +..++.+|...|+||.|-+-|  -+|+||+.|.+ ++|||.++..|++++++|..-++
T Consensus       165 VK-VWslgs~~-----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeGHt~Nvs  231 (794)
T KOG0276|consen  165 VK-VWSLGSPH-----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEGHTNNVS  231 (794)
T ss_pred             EE-EEEcCCCC-----CceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhcccccce
Confidence            56 78887776     999999999999999998755  49999999999 99999999999999999987766

>KOG2394|consensus

Probab=98.77  E-value=1.5e-08  Score=68.39  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ||. |||....+     ....++.--+.+.|++|||||+++++|++|.- |.||....++++..=++|...++
T Consensus       313 fLR-vF~fdt~e-----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  313 FLR-IFDFDTQE-----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             eEE-EeeccHHH-----HHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEecccccccee
Confidence            456 66665544     55555666778899999999999999999998 99999999999988888887776

>KOG0310|consensus

Probab=98.76  E-value=1.4e-08  Score=67.43  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=54.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +| +||+.+..     .++.+++|+.|++.+.|+|+ ++.|++|+.|+. +++||+.++.....+.+|.+.+++
T Consensus        92 V~-vfD~k~r~-----iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v-~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   92 VK-VFDMKSRV-----ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV-VKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             EE-EeccccHH-----HHHHHhhccCceeEEEecccCCeEEEecCCCce-EEEEEcCCcEEEEEecCCcceeEe
Confidence            56 88855543     78889999999999999995 567777888887 999999999887788899888773

>KOG0283|consensus

Probab=98.76  E-value=2.4e-08  Score=69.29  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=46.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      +. ||++....     |+++| .|.+-|+||+|+| |.+++++|+.|+. +|||++...+++
T Consensus       392 VR-LWh~~~~~-----CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~~Vv  445 (712)
T KOG0283|consen  392 VR-LWHPGRKE-----CLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDKKVV  445 (712)
T ss_pred             EE-eecCCCcc-----eeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcCeeE
Confidence            56 88887665     99999 4999999999999 8899999999999 999999876654

>KOG0645|consensus

Probab=98.76  E-value=5.5e-08  Score=61.24  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=53.0

Q ss_pred             EEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~-~~w   78 (78)
                      +|++..+.  .-.+..++. +|+..|.+++|+|.|++|+++|.|.+ +-||.-..+  +++..+++|...+. +.|
T Consensus        41 iw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t-~~Iw~k~~~efecv~~lEGHEnEVK~Vaw  113 (312)
T KOG0645|consen   41 IWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT-VVIWKKEDGEFECVATLEGHENEVKCVAW  113 (312)
T ss_pred             EEecCCCC--cEEEEEeccccchheeeeeeecCCCcEEEEeeccce-EEEeecCCCceeEEeeeeccccceeEEEE
Confidence            66665421  112444443 79999999999999999999999999 999975544  68999999988876 444

>KOG0307|consensus

Probab=98.72  E-value=2.1e-08  Score=71.68  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +| +||+|...    ..++++++|+..|.++.|++.+ .+|++++.|+. |.+|+.++|+.+.+++...+... +.|
T Consensus       234 iq-lWDlR~as----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~~~nW~fdv~w  304 (1049)
T KOG0307|consen  234 IQ-LWDLRFAS----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPAQGNWCFDVQW  304 (1049)
T ss_pred             eE-eecccccC----CchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCCCCcceeeeee
Confidence            57 99999987    6888899999999999999965 89999999999 99999999999999987555432 444

>KOG0294|consensus

Probab=98.72  E-value=6.9e-08  Score=61.83  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC--EEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT--MIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~--~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. |||++...     ....+-.|.+.|+++.|.+..+  +|.+|++||. |.+||+.+..++..+++|...++
T Consensus        65 I~-IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~-i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   65 IH-IYDMRKRK-----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH-IIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             EE-EEeccchh-----hhcceeccccceEEEEecCCcchhheeeecCCCc-EEEEEcCCeEEeeeecccccccc
Confidence            45 89998876     7888889999999999999876  9999999999 99999999999999999877655

>KOG0288|consensus

Probab=98.71  E-value=9.1e-08  Score=62.93  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=47.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCc----cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQ----SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~----~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++|++..+     ..+++.+..    .-.+.+.|||++.|+++|+.||. |.||++.++++...+...+.+
T Consensus       367 viDlRt~e-----I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  367 VIDLRTKE-----IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             eeeccccc-----EEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCC
Confidence            66777765     556665321    12678999999999999999999 999999999998888754433

>KOG0310|consensus

Probab=98.71  E-value=9.4e-08  Score=63.64  Aligned_cols=66  Identities=24%  Similarity=0.468  Sum_probs=52.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKK-VQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~~~   76 (78)
                      .+ +||+.+..     ....+.+|++.|.|.+|+|. +..++||+-||. ||+||+++. ..+.++.++....++
T Consensus       135 ~k-~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~-vrl~DtR~~~~~v~elnhg~pVe~v  202 (487)
T KOG0310|consen  135 VK-YWDLSTAY-----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGK-VRLWDTRSLTSRVVELNHGCPVESV  202 (487)
T ss_pred             EE-EEEcCCcE-----EEEEecCCcceeEeeccccCCCeEEEecCCCce-EEEEEeccCCceeEEecCCCceeeE
Confidence            35 88987765     46688999999999999995 458899999999 999999986 677777755444433

>KOG2096|consensus

Probab=98.70  E-value=2e-08  Score=64.64  Aligned_cols=39  Identities=28%  Similarity=0.535  Sum_probs=36.0

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +.++.+|++.|++++|+.||++|+|++.|++ ||+||+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~-Ir~w~~~D  117 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRS-IRLWDVRD  117 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCce-EEEEecch
Confidence            4456899999999999999999999999999 99999885

>KOG0772|consensus

Probab=98.69  E-value=3.1e-08  Score=66.79  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc--CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS--ELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVE   66 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~   66 (78)
                      +| +||..+..  .....+.=.+|.+  .|.||+||+||++|++-+.|++ +++||++.- +++..
T Consensus       341 IQ-~W~~~~~~--v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  341 IQ-IWDKGSRT--VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQFKKPLNV  402 (641)
T ss_pred             ee-eeecCCcc--cccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeeccccccchhh
Confidence            68 99986544  2233444458877  8999999999999999999999 999999864 34433

>KOG0295|consensus

Probab=98.69  E-value=4.3e-08  Score=63.63  Aligned_cols=66  Identities=29%  Similarity=0.442  Sum_probs=60.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .||+.++-     ++++|++|...+..++-+.||+.+|+++.|.+ +++|-..++.+...++.|.-++. +.|
T Consensus       219 ~We~~tg~-----cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt-l~vW~~~t~~~k~~lR~hEh~vEci~w  285 (406)
T KOG0295|consen  219 AWECDTGY-----CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT-LRVWVVATKQCKAELREHEHPVECIAW  285 (406)
T ss_pred             EEecccce-----eEEeccCchHhEEEEEecCCeeEEEecCCCce-EEEEEeccchhhhhhhccccceEEEEe
Confidence            79998887     99999999999999999999999999999999 99999999988888988887766 444

>smart00320 WD40 WD40 repeats

Probab=98.68  E-value=9.7e-08  Score=41.04  Aligned_cols=37  Identities=32%  Similarity=0.641  Sum_probs=33.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD   57 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d   57 (78)
                      +...+..|...|.++.|++++..+++++.|+. +++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            56677889999999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0296|consensus

Probab=98.67  E-value=9.4e-08  Score=62.06  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=46.3

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ...+++.+|+.++++=.|.|||+.++++..|++ |++||+.++.++..+.
T Consensus       181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPKTGQPLHKIT  229 (399)
T ss_pred             ceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecCCCceeEEec
Confidence            388899999999999999999999999999999 9999999999988876

>KOG0305|consensus

Probab=98.66  E-value=1.1e-07  Score=63.98  Aligned_cols=66  Identities=26%  Similarity=0.410  Sum_probs=58.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEE--cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATA--SSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~--~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      |||.....     ..+++..|.+.|.+++|+| ....||+|  +.|+. |++||+.+|..+..+..+....+|.|
T Consensus       327 Iwd~~~~~-----p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtgsQVcsL~W  395 (484)
T KOG0305|consen  327 IWDGLSPE-----PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDTGSQVCSLIW  395 (484)
T ss_pred             eccCCCcc-----ccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccccCCceeeEEE
Confidence            88986555     8899999999999999999 67789886  67889 99999999999999988888888877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.65  E-value=3.5e-07  Score=64.43  Aligned_cols=65  Identities=14%  Similarity=0.272  Sum_probs=52.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC------cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK------VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~------~~~~~~~~~~~~~~   75 (78)
                      +. +||+++..    ....++.+|...|.++.|. +++.|++++.|++ |++||++.+      ..+..+.+|...++
T Consensus       642 I~-iwD~~~~~----~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~gh~~~i~  712 (793)
T PLN00181        642 VY-YYDLRNPK----LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMGHTNVKN  712 (793)
T ss_pred             EE-EEECCCCC----ccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcCCCCCee
Confidence            56 89987653    3567788999999999997 7889999999999 999999743      56777877766544

>KOG0305|consensus

Probab=98.65  E-value=5.1e-08  Score=65.57  Aligned_cols=67  Identities=18%  Similarity=0.399  Sum_probs=56.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .+|++..+.    ...++.+|..+|+.++|++|+++||+|+.|+. +.|||.....+...+..|.+.+. +.|
T Consensus       284 ~~dvR~~~~----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~-~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  284 NHDVRISQH----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV-VFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             EEEEecchh----hhhhhhcccceeeeeEECCCCCeeccCCCccc-eEeccCCCccccEEEeccceeeeEeee
Confidence            678887762    23348899999999999999999999999999 99999988888888888877776 544

>KOG0283|consensus

Probab=98.64  E-value=3.8e-08  Score=68.36  Aligned_cols=39  Identities=28%  Similarity=0.617  Sum_probs=34.7

Q ss_pred             cEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          21 PVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        21 ~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .+.++ +|++.|+++.||+||++||+|++|+. ||||.+..
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~v-irVWkVie  298 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGV-IRVWKVIE  298 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCce-EEEEEEec
Confidence            34455 89999999999999999999999999 99998765

>KOG1332|consensus

Probab=98.62  E-value=1.5e-07  Score=58.79  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=55.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~-~~w   78 (78)
                      ++ ||+++++.+  .+.+.++.+|++|+..++|-.  .|+.||+++.|+. |.||.-.+|+  ...+...|...++ +.|
T Consensus        35 Vk-If~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g~w~k~~e~~~h~~SVNsV~w  110 (299)
T KOG1332|consen   35 VK-IFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENGRWTKAYEHAAHSASVNSVAW  110 (299)
T ss_pred             EE-EEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCCchhhhhhhhhhcccceeecc
Confidence            45 788887763  358899999999999999944  7999999999999 9999988773  3445555666655 544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.62  E-value=5.2e-07  Score=55.51  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +||+.+..     ....+ .+...+.+++|+|+|++|+++ +.++. |.+||+++++++..++.+..|-.+
T Consensus       233 v~d~~~~~-----~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~  296 (300)
T TIGR03866       233 VVDAKTYE-----VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSND-VSVIDVAALKVIKSIKVGRLPWGV  296 (300)
T ss_pred             EEECCCCc-----EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEccccccee
Confidence            67775443     33333 244578899999999999886 56888 999999999999999877666543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034|consensus

Probab=98.62  E-value=1.2e-07  Score=61.08  Aligned_cols=51  Identities=14%  Similarity=0.328  Sum_probs=45.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEec---CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN---AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~---~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +. +|++++..     ++..|.   +|.++|.++.|+++|.++++++.|.+ +.+|++...
T Consensus       160 vR-lwnI~~~~-----Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs-lk~W~l~~~  213 (385)
T KOG1034|consen  160 VR-LWNIQTDV-----CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS-LKLWRLNVK  213 (385)
T ss_pred             EE-EEeccCCe-----EEEEecccccccCcEEEEEEcCCCCeeeccCCcce-EEEEecChh
Confidence            45 89998876     888884   79999999999999999999999999 999999843

>KOG0293|consensus

Probab=98.61  E-value=9.8e-08  Score=63.07  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=50.2

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w   78 (78)
                      +..+.+..|.++|+-+.||++|++||+++.|.+ ..+|++..-   +..+++.+|.+++. +.|
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~T-aiiw~v~~d~~~kl~~tlvgh~~~V~yi~w  277 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDST-AIIWIVVYDVHFKLKKTLVGHSQPVSYIMW  277 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCce-EEEEEEecCcceeeeeeeecccCceEEEEE
Confidence            467788899999999999999999999999999 999986543   34678889999987 655

>KOG0639|consensus

Probab=98.61  E-value=7.2e-08  Score=65.10  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      |. |||+....+.   ....+........+++.|||.+..+++..||. |+|||+.+...++.|++|.+.+.+
T Consensus       489 ls-iWDLAapTpr---ikaeltssapaCyALa~spDakvcFsccsdGn-I~vwDLhnq~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  489 LS-IWDLAAPTPR---IKAELTSSAPACYALAISPDAKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGASC  556 (705)
T ss_pred             ee-eeeccCCCcc---hhhhcCCcchhhhhhhcCCccceeeeeccCCc-EEEEEcccceeeecccCCCCCcee
Confidence            56 9999887621   23334444456678999999999999999999 999999999999999999887653

>KOG0647|consensus

Probab=98.60  E-value=2.3e-07  Score=59.25  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC--EEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT--MIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~--~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ++ +||+.++      ....+..|.++|.++.|-+...  .|+|||-|++ ++.||++....+..+.
T Consensus        96 ~k-~wDL~S~------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT-lKfWD~R~~~pv~t~~  154 (347)
T KOG0647|consen   96 AK-LWDLASG------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT-LKFWDTRSSNPVATLQ  154 (347)
T ss_pred             eE-EEEccCC------CeeeeeecccceeEEEEecCCCcceeEecccccc-eeecccCCCCeeeeee
Confidence            46 8999876      5677889999999999977655  8999999999 9999999887776664

>KOG0313|consensus

Probab=98.60  E-value=1.7e-07  Score=61.23  Aligned_cols=65  Identities=15%  Similarity=0.262  Sum_probs=53.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCc-EEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKV-QLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~   74 (78)
                      +||=+.++  ..-..++|-+|++.|.++.|+|. -..|++++.|++ +++||+++.+ +++.+.+|.+.+
T Consensus       326 l~DPR~~~--gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~k~plydI~~h~DKv  392 (423)
T KOG0313|consen  326 LWDPRTGD--GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRSTKAPLYDIAGHNDKV  392 (423)
T ss_pred             ecCCCCCC--CceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccCCCcceeeccCCceE
Confidence            77877764  22467888999999999999994 568999999999 9999999887 889988875543

>KOG0278|consensus

Probab=98.58  E-value=1.4e-07  Score=59.19  Aligned_cols=59  Identities=19%  Similarity=0.359  Sum_probs=50.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +||+.+.+    -+...+.+|.+.|..+-|....+.+.+++.|++ ||+||.+++..++.+.-.
T Consensus       126 vfdln~p~----App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t-VRLWD~rTgt~v~sL~~~  184 (334)
T KOG0278|consen  126 VFDLNRPK----APPKEISGHTGGIRTVLWCHEDKCILSSADDKT-VRLWDHRTGTEVQSLEFN  184 (334)
T ss_pred             hhhccCCC----CCchhhcCCCCcceeEEEeccCceEEeeccCCc-eEEEEeccCcEEEEEecC
Confidence            67776665    467778999999999999998899999999999 999999999888877643

>KOG0282|consensus

Probab=98.58  E-value=1.5e-08  Score=67.41  Aligned_cols=59  Identities=10%  Similarity=0.348  Sum_probs=53.8

Q ss_pred             CCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCCeE-EeC
Q psy1940          19 SSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK-KVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~~-~~w   78 (78)
                      +.++++.+|...|+++.|.| .+.+|++++.|+. |.||++.+ +.+++++.+|..+++ ++|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~-vklW~vy~~~~~lrtf~gH~k~Vrd~~~  266 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGL-VKLWNVYDDRRCLRTFKGHRKPVRDASF  266 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCce-EEEEEEecCcceehhhhcchhhhhhhhc
Confidence            57889999999999999999 8999999999999 99999887 899999999998876 554

>KOG0268|consensus

Probab=98.57  E-value=1.9e-07  Score=60.82  Aligned_cols=66  Identities=14%  Similarity=0.243  Sum_probs=57.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      |||.+...     ++..+.-..+.|.++.|+|-. ..|+++++|++ |.+||++.+.+++++-....+..+||
T Consensus       171 IWD~~R~~-----Pv~smswG~Dti~svkfNpvETsILas~~sDrs-IvLyD~R~~~Pl~KVi~~mRTN~Isw  237 (433)
T KOG0268|consen  171 IWDEQRDN-----PVSSMSWGADSISSVKFNPVETSILASCASDRS-IVLYDLRQASPLKKVILTMRTNTICW  237 (433)
T ss_pred             ecccccCC-----ccceeecCCCceeEEecCCCcchheeeeccCCc-eEEEecccCCccceeeeeccccceec
Confidence            88887766     777888778899999999954 57777889999 99999999999998888888888888

>KOG0646|consensus

Probab=98.57  E-value=5e-08  Score=64.70  Aligned_cols=56  Identities=25%  Similarity=0.559  Sum_probs=47.7

Q ss_pred             CCcEEecCCcc--CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQS--ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .....+.+|.+  +|+|++.|-||+.|++|++||. +.|||+.+.++++++.....|++
T Consensus       266 t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~S~Q~iRtl~~~kgpVt  323 (476)
T KOG0646|consen  266 TQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIYSKQCIRTLQTSKGPVT  323 (476)
T ss_pred             ceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecchHHHHHHHhhhccccc
Confidence            35677889988  9999999999999999999999 99999999988887764444443

>KOG0308|consensus

Probab=98.57  E-value=3.4e-07  Score=63.03  Aligned_cols=69  Identities=22%  Similarity=0.413  Sum_probs=57.3

Q ss_pred             EEEcccCCc-----CCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTEL-----SSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~-----~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +||+..+..     .++.....+. ++..+|++++.++.|+.+++|+..+. +|+||.++++.+..+++|.+-+++
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wDprt~~kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWDPRTCKKIMKLRGHTDNVRV  218 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEeccccccceeeeeccccceEE
Confidence            799885521     2333444444 89999999999999999999999999 999999999999999999988774

>KOG0640|consensus

Probab=98.55  E-value=1e-07  Score=61.37  Aligned_cols=66  Identities=20%  Similarity=0.381  Sum_probs=51.7

Q ss_pred             eeeEEEcccCCcCCCCCcEE---ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVT---INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~---~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +. +||+.+..     +...   -..|++.|++|.+|+.|+..++++.||. |++||--+++|+.++...++...+
T Consensus       240 ~r-lYdv~T~Q-----cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsev  308 (430)
T KOG0640|consen  240 LR-LYDVNTYQ-----CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEV  308 (430)
T ss_pred             ee-EEecccee-----EeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCcee
Confidence            34 77776654     2111   1479999999999999999999999999 999998899999888765555444

>KOG0270|consensus

Probab=98.55  E-value=4.7e-07  Score=59.95  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCCeEEeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK-KVQLVELRRGSDPATLYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~~~~w   78 (78)
                      .+. +||+..+.     +..++..|.++|.++.|.| .+..|++|+.|++ +++.|.|. +..-..++-..+..++.|
T Consensus       267 TV~-lWD~~~g~-----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  267 TVK-LWDVDTGK-----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDPSNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             eEE-EEEcCCCC-----cceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCccccCceEEeccceEEEEe
Confidence            356 99999886     8888988999999999998 5789999999999 99999993 333344444445555555

>KOG0318|consensus

Probab=98.55  E-value=4e-07  Score=61.52  Aligned_cols=57  Identities=25%  Similarity=0.432  Sum_probs=47.5

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee---CCCCCe-EEeC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR---RGSDPA-TLYW   78 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~---~~~~~~-~~~w   78 (78)
                      ..+++.|..-|+|+.|||||+++++++.|+. +.+||=.+|+.+.++.   +|...+ .|.|
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktge~vg~l~~~~aHkGsIfalsW  243 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTGEKVGELEDSDAHKGSIFALSW  243 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence            3445678999999999999999999999999 9999999999999998   554443 2444

>KOG0973|consensus

Probab=98.53  E-value=1.8e-07  Score=66.54  Aligned_cols=58  Identities=14%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +...+++|.+.|..+.|+|++.+|++++-|++ |.|||.++.+.+..+++|+..+. +.|
T Consensus       121 ~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns-Viiwn~~tF~~~~vl~~H~s~VKGvs~  179 (942)
T KOG0973|consen  121 VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS-VIIWNAKTFELLKVLRGHQSLVKGVSW  179 (942)
T ss_pred             EEEEEecCCCccceeccCCCccEEEEecccce-EEEEccccceeeeeeecccccccceEE
Confidence            56778999999999999999999999999999 99999999999999999887664 544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.53  E-value=9.2e-07  Score=53.27  Aligned_cols=64  Identities=16%  Similarity=0.366  Sum_probs=47.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      ++ +||++ .     +.+..+.  ..+++.|.|||+|++|+.++.+   |. +.+||+++.+.+.+.++. ....+.|
T Consensus        85 v~-lyd~~-~-----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~~~-~~t~~~W  151 (194)
T PF08662_consen   85 VT-LYDVK-G-----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFEHS-DATDVEW  151 (194)
T ss_pred             cE-EEcCc-c-----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccccC-cEEEEEE
Confidence            45 77874 2     3555553  5678999999999999998744   67 999999988888887643 4455666

>KOG1034|consensus

Probab=98.50  E-value=3e-07  Score=59.31  Aligned_cols=50  Identities=12%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             CCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          19 SSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++...+.+|.+.|+.|.|.|+. ++++++|+|.+ ||+|++++..|+..+-+
T Consensus       126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             hhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecc
Confidence            3888899999999999999964 79999999999 99999999999988854

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.50  E-value=1.5e-06  Score=53.46  Aligned_cols=65  Identities=25%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +. +||+.+..     ..+.+..+.. +.+++|+|+|+.+ ++++.++. +++||..+++.+..+..+..+..+
T Consensus        13 v~-~~d~~t~~-----~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~~~~~~~~   78 (300)
T TIGR03866        13 IS-VIDTATLE-----VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDT-IQVIDLATGEVIGTLPSGPDPELF   78 (300)
T ss_pred             EE-EEECCCCc-----eEEEEECCCC-CCceEECCCCCEEEEEECCCCe-EEEEECCCCcEEEeccCCCCccEE
Confidence            44 78876654     7777776644 5779999999976 56678888 999999999887777665555444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274|consensus

Probab=98.48  E-value=4.5e-07  Score=64.17  Aligned_cols=57  Identities=18%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +.++.+.+     ..+++++|+++|.++.|+|.|++||+++.||. ++|||+.++.+...+.+
T Consensus       122 ~~~~~D~s-----~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v~iw~~~~~~~~~tl~~  178 (933)
T KOG1274|consen  122 LLNLDDSS-----QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-VQIWDLQDGILSKTLTG  178 (933)
T ss_pred             EEeccccc-----hheeecccCCceeeeeEcCCCCEEEEEecCce-EEEEEcccchhhhhccc
Confidence            34554444     88899999999999999999999999999999 99999999987666653

>KOG0300|consensus

Probab=98.47  E-value=6.1e-07  Score=58.08  Aligned_cols=59  Identities=20%  Similarity=0.386  Sum_probs=48.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~   71 (78)
                      +||.+...    ..+.+|++|...|.++.|+.|. .+++++.|.+ |++||+++ ...+.+++..+
T Consensus       340 LWDFReaI----~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrT-vKvWdLrNMRsplATIRtdS  399 (481)
T KOG0300|consen  340 LWDFREAI----QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRT-VKVWDLRNMRSPLATIRTDS  399 (481)
T ss_pred             eccchhhc----ceeeeecccccceeEEEEecCC-ceeecCCCce-EEEeeeccccCcceeeecCC
Confidence            79988655    4788899999999999999764 6889999999 99999986 45666666443

>KOG0299|consensus

Probab=98.47  E-value=2.9e-07  Score=61.15  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +|-..+.+++.|+||++|++|+.|.. |.|||.++.+.++.+.+|.+++.
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~-v~Iw~~~t~ehv~~~~ghr~~V~  248 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRH-VQIWDCDTLEHVKVFKGHRGAVS  248 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCce-EEEecCcccchhhccccccccee
Confidence            88899999999999999999999999 99999999999999999987764

>KOG0267|consensus

Probab=98.46  E-value=1.4e-07  Score=65.56  Aligned_cols=66  Identities=17%  Similarity=0.313  Sum_probs=58.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      ++ +||+....     .++++.+|...+.++.|+|-|.+.++++.|.. +.+||++.-.|.+.+.+|...+++
T Consensus        94 iK-~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd-~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   94 IK-VWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTD-LKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             ee-eeehhhhh-----hhhhhhccccCcceeeeccceEEecccccccc-ceehhhhccCceeeecCCcceeEE
Confidence            57 89998664     89999999999999999999999999999999 999999987788888887666654

>KOG0641|consensus

Probab=98.45  E-value=2.6e-06  Score=53.16  Aligned_cols=66  Identities=12%  Similarity=0.254  Sum_probs=52.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC----cEEEEeeCCC-CCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK----VQLVELRRGS-DPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~----~~~~~~~~~~-~~~~~~w   78 (78)
                      +||++-+.     .++.|..|...|.|+.|||...++.+++.|.. |++-|++..    -.+.....|. +.+++.|
T Consensus       257 lydirg~r-----~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv~ehkdk~i~~rw  327 (350)
T KOG0641|consen  257 LYDIRGGR-----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVVAEHKDKAIQCRW  327 (350)
T ss_pred             EEEeeCCc-----eeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEEEeccCceEEEEe
Confidence            79998775     88899999999999999999999999999999 999998732    2333333444 4456777

>KOG1272|consensus

Probab=98.45  E-value=2.6e-07  Score=61.69  Aligned_cols=51  Identities=24%  Similarity=0.428  Sum_probs=44.7

Q ss_pred             CCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          18 SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        18 ~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ...+..+..|.++|++|++.++|.+++|.+.|.. ++|||++.-..+..++.
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec
Confidence            3466667789999999999999999999999999 99999998877766654

>KOG0289|consensus

Probab=98.44  E-value=8.5e-07  Score=58.89  Aligned_cols=46  Identities=17%  Similarity=0.484  Sum_probs=42.8

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      -.+.+.+|.|||..|++|..|+. ++|||+.++..+..|++|..+++
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~-vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGV-VKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCce-EEEEEcCCccccccCCCCCCcee
Confidence            35889999999999999999999 99999999999999999998876

>KOG0294|consensus

Probab=98.44  E-value=9e-07  Score=56.85  Aligned_cols=66  Identities=15%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +||+.+-.     ++.++++|++.|+.++..|.|+...+.+.|+. +|.||+-.|+.-+.++-...+..+.|
T Consensus       111 iw~~~~W~-----~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~Gr~a~v~~L~~~at~v~w  176 (362)
T KOG0294|consen  111 IWRVGSWE-----LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRGRVAFVLNLKNKATLVSW  176 (362)
T ss_pred             EEEcCCeE-----EeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcCccceeeccCCcceeeEE
Confidence            88887776     99999999999999999999999999999999 99999998887666665555544555

>KOG0290|consensus

Probab=98.42  E-value=6.4e-07  Score=57.18  Aligned_cols=52  Identities=17%  Similarity=0.277  Sum_probs=46.5

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .++ |.|++..+    ..+..+++|++.|+.|+|-| ..+++.|++.|.. +.+||+..
T Consensus       267 ~V~-iLDiR~P~----tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q  319 (364)
T KOG0290|consen  267 KVV-ILDIRVPC----TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQ  319 (364)
T ss_pred             eEE-EEEecCCC----cceehhhcCcccccceEecCCCCceeeecCCcce-EEEEeccc
Confidence            467 88999887    68899999999999999999 5789999999999 99999874

>KOG0642|consensus

Probab=98.42  E-value=4.7e-07  Score=61.35  Aligned_cols=52  Identities=21%  Similarity=0.403  Sum_probs=44.0

Q ss_pred             EEEc---ccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDL---SSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~---~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +|.+   ......+.+.+.+|++|.+||.|+..++.+.++++|+-||+ |++|++.
T Consensus       320 ~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p  374 (577)
T KOG0642|consen  320 LWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLP  374 (577)
T ss_pred             hhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccC
Confidence            6777   33334556689999999999999999999999999999999 9999544

>KOG1007|consensus

Probab=98.41  E-value=4.5e-07  Score=57.87  Aligned_cols=62  Identities=31%  Similarity=0.463  Sum_probs=49.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKK-VQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~   72 (78)
                      ++ .||+++-.     +...+ ++|...+..+.|+|.- ..|++++.||. |++||.+.. .++.++++|..
T Consensus       195 l~-~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  195 LQ-FWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             EE-EEEccchh-----hhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCCCce
Confidence            57 79998654     44444 5899999999999976 47889999999 999999864 57777777654

>KOG0268|consensus

Probab=98.40  E-value=1.7e-07  Score=61.10  Aligned_cols=51  Identities=16%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      +||++...    ..+.++.+|.+.|.+|.|||.|+-+++||.|++ ||||.++.+.
T Consensus       255 ~~DmR~l~----~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~  305 (433)
T KOG0268|consen  255 TYDMRNLS----RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGH  305 (433)
T ss_pred             ehhhhhhc----ccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCc
Confidence            46888876    688888999999999999999999999999999 9999998764

>KOG1538|consensus

Probab=98.40  E-value=5.9e-07  Score=62.64  Aligned_cols=47  Identities=19%  Similarity=0.405  Sum_probs=43.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +||..+++     ..+++.+|++.|++++|+.||+.+|+|+.|+. |.+|...
T Consensus        37 iyD~ndG~-----llqtLKgHKDtVycVAys~dGkrFASG~aDK~-VI~W~~k   83 (1081)
T KOG1538|consen   37 VYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGKRFASGSADKS-VIIWTSK   83 (1081)
T ss_pred             EEeCCCcc-----cccccccccceEEEEEEccCCceeccCCCcee-EEEeccc
Confidence            67877766     99999999999999999999999999999999 9999765

>KOG0643|consensus

Probab=98.39  E-value=7.1e-07  Score=56.40  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||++++.    +.+..-+.|...|+.+.|+||.++++|++.|.+ .++||.++-++++++..
T Consensus       171 is-~~da~~g~----~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~t  230 (327)
T KOG0643|consen  171 IS-IYDARTGK----ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTT  230 (327)
T ss_pred             EE-EEEcccCc----eeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeee
Confidence            45 79998865    366666789999999999999999999999999 99999999998888764

>KOG1445|consensus

Probab=98.38  E-value=6.8e-07  Score=62.02  Aligned_cols=66  Identities=17%  Similarity=0.378  Sum_probs=54.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCC--eEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRGSDP--ATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~--~~~~w   78 (78)
                      |||+....     ....+.+|...|-+..|+.||+.|++++.|+. |+|||.+. ++.++..++|...  .++.|
T Consensus       154 i~D~stqk-----~~~el~~h~d~vQSa~WseDG~llatscKdkq-irifDPRa~~~piQ~te~H~~~rdsRv~w  222 (1012)
T KOG1445|consen  154 ITDISTQK-----TAVELSGHTDKVQSADWSEDGKLLATSCKDKQ-IRIFDPRASMEPIQTTEGHGGMRDSRVLW  222 (1012)
T ss_pred             EEEcccCc-----eeecccCCchhhhccccccCCceEeeecCCcc-eEEeCCccCCCccccccccccchhheeee
Confidence            78987765     78888999999999999999999999999999 99999885 4677777766443  33555

>KOG0313|consensus

Probab=98.37  E-value=1.8e-06  Score=56.50  Aligned_cols=67  Identities=21%  Similarity=0.374  Sum_probs=53.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc---EEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV---QLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~~-~~w   78 (78)
                      +. .||+..+.     +.-++. ...++++|..+|..++|++|+.|.. +|+||.+++.   ..+.+.+|.+.+. +.|
T Consensus       283 Ik-~WDletg~-----~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkw  353 (423)
T KOG0313|consen  283 IK-VWDLETGG-----LKSTLT-TNKSLNCISYSPLSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKW  353 (423)
T ss_pred             EE-EEEeeccc-----ceeeee-cCcceeEeecccccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheec
Confidence            56 89998876     555554 3457899999999999999999999 9999999762   4577788877665 555

>KOG1009|consensus

Probab=98.37  E-value=7.2e-07  Score=58.63  Aligned_cols=58  Identities=17%  Similarity=0.361  Sum_probs=51.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ..+.+++|...|..++|+||+.++++++.|.. +++||+..|..+..+..|..-++ ++|
T Consensus       115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G~l~~~~~dh~~yvqgvaw  173 (434)
T KOG1009|consen  115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAGQLLAILDDHEHYVQGVAW  173 (434)
T ss_pred             EEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccceeEeeccccccccceeec
Confidence            35667899999999999999999999999999 99999999999999887766555 666

>KOG1446|consensus

Probab=98.36  E-value=3e-06  Score=54.09  Aligned_cols=53  Identities=15%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ..+.|+.-.+.|+++.|+++|.+|+++++|.+ +++||..+|+++.++...+..
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDs-l~LYd~~~g~~~~ti~skkyG   58 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDS-LRLYDSLSGKQVKTINSKKYG   58 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCe-EEEEEcCCCceeeEeeccccc
Confidence            55667767889999999999999999999999 999999999999888765433

>KOG0646|consensus

Probab=98.36  E-value=8.8e-07  Score=58.93  Aligned_cols=63  Identities=25%  Similarity=0.318  Sum_probs=52.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC---------CcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK---------KVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~---------~~~~~~~~~~~~~~~   75 (78)
                      +|.+.++.     .+.++.+|=..|+|+.|+.||.+|.||+.||. |.+|++.+         -+.++.+..|.-+++
T Consensus       107 lWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT  178 (476)
T KOG0646|consen  107 LWELSSGI-----LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT  178 (476)
T ss_pred             EEEecccc-----HHHHHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEEEeecccccCCCccceeeeccCcceeE
Confidence            78888876     88888999999999999999999999999999 99997542         245667777765554

>KOG0771|consensus

Probab=98.35  E-value=5.6e-07  Score=59.00  Aligned_cols=57  Identities=21%  Similarity=0.312  Sum_probs=46.0

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      |+. +|+.-+..     ....+..|..+|.++.|||||+.|++-+.| . .+|||+++|.++...
T Consensus       167 ~lR-v~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  167 TLR-VWEWPSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARK  223 (398)
T ss_pred             eEE-EEecCcch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhc
Confidence            566 77754443     555667899999999999999999999999 6 999999999655444

>KOG0299|consensus

Probab=98.34  E-value=3.7e-07  Score=60.62  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +| |||.++.+     .+++|.+|.++|.+++|-..-..|++++.|.+ +++|++..-..+.++.+|++.+
T Consensus       226 v~-Iw~~~t~e-----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs-vkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  226 VQ-IWDCDTLE-----HVKVFKGHRGAVSSLAFRKGTSELYSASADRS-VKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             EE-EecCcccc-----hhhcccccccceeeeeeecCccceeeeecCCc-eEEEehhHhHHHHHHhCCccce
Confidence            46 99999887     88889999999999999988889999999999 9999998777777777776554

>KOG0640|consensus

Probab=98.34  E-value=9.2e-07  Score=57.04  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=50.0

Q ss_pred             EEEcccCCcCCCCCcEEec-CCc-cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTIN-AHQ-SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~-~h~-~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      |||--++.     |+.+|. +|. .+|.+..|..+|+++.+++.|.. +++|.+.+|+++.++-+.
T Consensus       287 lwDGVS~r-----Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  287 LWDGVSNR-----CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eeccccHH-----HHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceEEEEecC
Confidence            77765554     888886 674 47999999999999999999999 999999999999998764

>KOG0269|consensus

Probab=98.33  E-value=7.5e-07  Score=62.29  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=56.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +||+....  .++....|..|+-.++++.|++ ....|++|+.||+ |++||++..+....+++....++ +.|
T Consensus       114 vWdlnk~~--rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~-vK~~DlR~~~S~~t~~~nSESiRDV~f  184 (839)
T KOG0269|consen  114 VWDLNKSI--RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT-VKCWDLRSKKSKSTFRSNSESIRDVKF  184 (839)
T ss_pred             EEecCccc--cchhhhHhhhhccceeeeeeccCCccEEEecCCCce-EEEEeeecccccccccccchhhhceee
Confidence            79987632  3367788999999999999988 5689999999999 99999999888888877666554 443

>KOG0292|consensus

Probab=98.32  E-value=3.3e-06  Score=60.33  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++ +|...+..     +..++.+|-+.|..+.|.+.=-++.++|.|.+ ||||+-.++.++..+.+|...
T Consensus        75 Ik-VWnYk~rr-----clftL~GHlDYVRt~~FHheyPWIlSASDDQT-IrIWNwqsr~~iavltGHnHY  137 (1202)
T KOG0292|consen   75 IK-VWNYKTRR-----CLFTLLGHLDYVRTVFFHHEYPWILSASDDQT-IRIWNWQSRKCIAVLTGHNHY  137 (1202)
T ss_pred             EE-EEecccce-----ehhhhccccceeEEeeccCCCceEEEccCCCe-EEEEeccCCceEEEEecCceE
Confidence            45 77776654     99999999999999999999999999999999 999999999999999987543

>KOG0290|consensus

Probab=98.31  E-value=5.1e-06  Score=53.18  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=48.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcE---EEEeeC-CCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQ---LVELRR-GSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~---~~~~~~-~~~~~~~~w   78 (78)
                      |||+..+...  .....+=+|..+|..|+|..+| ..+|+.+.||+ +|+||+++-..   +.+-+. +..-.+|.|
T Consensus       177 iWdie~~~~~--~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  177 IWDIETGVSG--TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             EEEEeecccc--ceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEecccccceEEecCCCCCCcceeecc
Confidence            8999876311  1234455899999999999865 58999999999 99999997543   233333 223355665

>KOG2096|consensus

Probab=98.30  E-value=9.2e-07  Score=57.13  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=42.6

Q ss_pred             EEEccc---CCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDLSS---TELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~---~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +|++--   ++-++.+.+..+.+|+..|...+||++.+.++|.+.||. +|+||+.
T Consensus       254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtd  308 (420)
T KOG2096|consen  254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTD  308 (420)
T ss_pred             EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeecc
Confidence            555432   333445567778899999999999999999999999999 9999976

>KOG2139|consensus

Probab=98.29  E-value=5.3e-06  Score=54.36  Aligned_cols=53  Identities=25%  Similarity=0.448  Sum_probs=42.3

Q ss_pred             cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe-EEeC
Q psy1940          25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA-TLYW   78 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-~~~w   78 (78)
                      ++| .+|.++.|++||..+++++.+...|+|||+.++.++...+.+...+ .|+|
T Consensus       193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW  246 (445)
T ss_pred             CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence            456 6899999999999999999887669999999998776665544444 3665

>KOG0641|consensus

Probab=98.29  E-value=9.3e-06  Score=50.72  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=55.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecC--C-----ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINA--H-----QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~--h-----~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +. .||++-+.     ++.++..  |     ...|.+++..|.|++|+++-.|.+ ..+||++.++.++.+..|...+++
T Consensus       206 ir-fwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~r~iq~f~phsadir~  278 (350)
T KOG0641|consen  206 IR-FWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGGRMIQRFHPHSADIRC  278 (350)
T ss_pred             EE-EEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCCceeeeeCCCccceeE
Confidence            45 89998876     7776642  2     356889999999999999999999 999999999999999888777663

>KOG0306|consensus

Probab=98.28  E-value=2.2e-06  Score=60.07  Aligned_cols=54  Identities=11%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      -..++.||+-||.|+..|||++.++|||.|+. |++|-+.=|.|.+.+.+|.+.+
T Consensus       542 FflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fAHdDSv  595 (888)
T KOG0306|consen  542 FFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFAHDDSV  595 (888)
T ss_pred             eeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhcccCce
Confidence            55567899999999999999999999999999 9999999899999999888774

>KOG0300|consensus

Probab=98.27  E-value=9.4e-07  Score=57.24  Aligned_cols=46  Identities=22%  Similarity=0.384  Sum_probs=43.0

Q ss_pred             eEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940           6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD   57 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d   57 (78)
                      |||.+.++.     |+.++.+|.+.|++|+|++.|.++++++.|++ ..||.
T Consensus       173 ~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t-aHIW~  218 (481)
T KOG0300|consen  173 RIWSLESGA-----CLATYTGHTGSVNSIKFHNSGLLLLTASGDET-AHIWK  218 (481)
T ss_pred             eEEeecccc-----ceeeecccccceeeEEeccccceEEEccCCcc-hHHHH
Confidence            489988876     99999999999999999999999999999999 99996

>KOG1310|consensus

Probab=98.27  E-value=1.5e-06  Score=59.43  Aligned_cols=52  Identities=23%  Similarity=0.479  Sum_probs=45.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      ..+.+.||++=|+++.|+.||.+|++|+.|-. +.|||.-..+.++.+..++.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~KllhsI~TgHt   93 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEYKLLHSISTGHT   93 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcce-EEeecchhcceeeeeecccc
Confidence            45567899999999999999999999999999 99999988888888875543

>KOG2048|consensus

Probab=98.23  E-value=4.9e-06  Score=57.53  Aligned_cols=43  Identities=35%  Similarity=0.506  Sum_probs=37.8

Q ss_pred             EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940          22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      ..|...++.|.+++|+|+|..+++|+.||. |++||+.++.-++
T Consensus       148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRIWDVKSGQTLH  190 (691)
T ss_pred             eecccccceEEEEEecCCccEEEecccCce-EEEEEcCCCceEE
Confidence            344556789999999999999999999999 9999999987766

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.20  E-value=2.5e-05  Score=48.42  Aligned_cols=63  Identities=32%  Similarity=0.508  Sum_probs=52.7

Q ss_pred             EEEccc-CCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSS-TELSSSSSPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~-~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +||... .     .....+..|...|..++|+|++..+++++. |+. +++|++..+..+..+..|...+.
T Consensus       138 ~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~  202 (466)
T COG2319         138 LWDLSTPG-----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT-IKLWDLRTGKPLSTLAGHTDPVS  202 (466)
T ss_pred             EEEecCCC-----eEEEEEecCcccEEEEEECCCCCEEEecCCCCCc-eEEEEcCCCceEEeeccCCCceE
Confidence            677665 3     377778899999999999999998998886 999 99999998888888887666654

>KOG0973|consensus

Probab=98.19  E-value=6.2e-06  Score=59.08  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=47.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      +|+.++..     ..+++++|++.|-.++|.|-|++||+-+.|++ ++||++.+-...+.+
T Consensus       155 iwn~~tF~-----~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-ikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  155 IWNAKTFE-----LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-LKVWRTSDWGIEKSI  209 (942)
T ss_pred             EEccccce-----eeeeeecccccccceEECCccCeeeeecCCce-EEEEEcccceeeEee
Confidence            78887775     99999999999999999999999999999999 999997765444443

>KOG1188|consensus

Probab=98.18  E-value=3.7e-06  Score=54.45  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .++ +||+|+..    +.+..+ ..|.+-|+++.|.| +-+.|+|||.||- |.+||+..
T Consensus       144 ~v~-lwDvR~~q----q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~  197 (376)
T KOG1188|consen  144 SVV-LWDVRSEQ----QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKK  197 (376)
T ss_pred             EEE-EEEecccc----chhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCC
Confidence            467 99999876    334444 58999999999999 6789999999999 99999873

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.18  E-value=2.1e-05  Score=51.61  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +.|..+.+     .+..+......-..+.|+|||+++++++.|+. |.++|+.+++.+.+++.+..+..+
T Consensus        20 viD~~t~~-----~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen   20 VIDGATNK-----VVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             EEETTT-S-----EEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             EEECCCCe-----EEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcccEEEEEecCCCcceE
Confidence            56766554     78888765544445789999999999999999 999999999999999987776654

...

>KOG0288|consensus

Probab=98.18  E-value=5.8e-07  Score=59.27  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=52.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++ +|++.+..     ..++|.+|++.|.++.|......+++++.|.+ |+.||+..+.|.+++...+
T Consensus       243 ~r-~Wnvd~~r-----~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt-iK~WDl~k~~C~kt~l~~S  303 (459)
T KOG0288|consen  243 LR-LWNVDSLR-----LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT-IKLWDLQKAYCSKTVLPGS  303 (459)
T ss_pred             ee-eeeccchh-----hhhhhcccccceeeehhhccccceeeccccch-hhhhhhhhhheeccccccc
Confidence            45 89988775     89999999999999999987777999999999 9999999888877665443

>KOG4328|consensus

Probab=98.16  E-value=1.1e-05  Score=53.91  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      |||+++...... .....-.|.-+|+++.|||+|-.|+|-+.|.. |||||..
T Consensus       349 IWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss  399 (498)
T KOG4328|consen  349 IWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSS  399 (498)
T ss_pred             eeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecc
Confidence            999999874322 22333479999999999998777999999999 9999983

>KOG0322|consensus

Probab=98.14  E-value=2.7e-06  Score=53.77  Aligned_cols=38  Identities=18%  Similarity=0.402  Sum_probs=35.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT   58 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~   58 (78)
                      ....+.-|++.|++++|+||...+|++++|.. |.+|++
T Consensus       285 pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  285 PLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             chhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            77778889999999999999999999999999 999985

>KOG1009|consensus

Probab=98.13  E-value=1.2e-05  Score=53.00  Aligned_cols=52  Identities=12%  Similarity=0.310  Sum_probs=42.0

Q ss_pred             EEEcccCCcCCC----CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDLSSTELSSS----SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~~~~~~~----~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ||.+....++.+    +....+..|...|+++.|+|+|..||+|+.++. +.+|-..
T Consensus        40 iW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~   95 (434)
T KOG1009|consen   40 IWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQG   95 (434)
T ss_pred             eeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEec
Confidence            788777664332    234556789999999999999999999999999 9999654

>KOG1273|consensus

Probab=98.11  E-value=3.2e-06  Score=54.62  Aligned_cols=47  Identities=21%  Similarity=0.370  Sum_probs=43.2

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      -.|+.||+-|.+||+|..||. +.|||..+...-+.+.+|-.|++ +||
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~-vvI~D~~T~~iar~lsaH~~pi~sl~W   73 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGR-VVIYDFDTFRIARMLSAHVRPITSLCW   73 (405)
T ss_pred             cceEEeccCcceeeeeccCCc-EEEEEccccchhhhhhccccceeEEEe
Confidence            578999999999999999999 99999999888788888988887 888

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.10  E-value=4.9e-05  Score=47.10  Aligned_cols=63  Identities=33%  Similarity=0.495  Sum_probs=50.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCcEEE-EeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKVQLV-ELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~~~~-~~~~~~~~   73 (78)
                      ++ +|++....     ....+.+|...+.+++|+|++. .+++++.|+. +++||...+..+. .+..|...
T Consensus       180 ~~-~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~  244 (466)
T COG2319         180 IK-LWDLRTGK-----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGKLLRSTLSGHSDS  244 (466)
T ss_pred             eE-EEEcCCCc-----eEEeeccCCCceEEEEEcCCcceEEEEecCCCc-EEEEECCCCcEEeeecCCCCcc
Confidence            45 78877643     7788888999999999999998 5656699999 9999998888777 56666554

>KOG1063|consensus

Probab=98.10  E-value=9.9e-06  Score=56.38  Aligned_cols=49  Identities=12%  Similarity=0.213  Sum_probs=40.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +|...+-.     ..+.+.+|+-.|..++|||||++|+++++|.+ +.+|.....
T Consensus       556 lw~t~~W~-----~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~  604 (764)
T KOG1063|consen  556 LWNTANWL-----QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQED  604 (764)
T ss_pred             EEeccchh-----hhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecc
Confidence            56655543     56678999999999999999999999999999 999976543

>KOG2445|consensus

Probab=98.10  E-value=2.1e-05  Score=50.64  Aligned_cols=57  Identities=21%  Similarity=0.395  Sum_probs=44.0

Q ss_pred             cEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC----cEEEEeeCCCCC-eEEeC
Q psy1940          21 PVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK----VQLVELRRGSDP-ATLYW   78 (78)
Q Consensus        21 ~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~----~~~~~~~~~~~~-~~~~w   78 (78)
                      .+.|. +|++-|+++.|++-|+++|||+.|++ +.|||.++.    .+....+.|... .++.|
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~-vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~W   67 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQT-VKIWDSTSDSGTWSCTSSWRAHDGSIWRVVW   67 (361)
T ss_pred             ccccccCCcceeeeeeecccCceeeeccCCCc-EEEEeccCCCCceEEeeeEEecCCcEEEEEe
Confidence            34444 79999999999999999999999999 999996543    466666665544 44655

>KOG0303|consensus

Probab=98.07  E-value=6.8e-06  Score=54.28  Aligned_cols=58  Identities=19%  Similarity=0.297  Sum_probs=46.2

Q ss_pred             CcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCC-------cEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKK-------VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~-------~~~~~~~~~~~~~~-~~w   78 (78)
                      ..-.+.+|.+++..++|+| +...+|+||+|.+ |.||++..+       +.+..+.+|...+. +.|
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~-v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~w  139 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK-VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQW  139 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCce-EEEEECCCcccccCcccceEEEeecceeEEEEee
Confidence            3445679999999999999 6678999999999 999998754       35677778877766 444

>KOG0270|consensus

Probab=98.05  E-value=2.1e-06  Score=56.93  Aligned_cols=53  Identities=19%  Similarity=0.423  Sum_probs=45.8

Q ss_pred             cCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          25 NAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        25 ~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .+|++.|.+++|+.. .+.||+||.|.+ |.+||+.+|++-..+..|.+.++ +.|
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~T-V~lWD~~~g~p~~s~~~~~k~Vq~l~w  294 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKT-VKLWDVDTGKPKSSITHHGKKVQTLEW  294 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCce-EEEEEcCCCCcceehhhcCCceeEEEe
Confidence            368889999999885 468999999999 99999999999999998777776 666

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.03  E-value=9.5e-05  Score=44.55  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             EEEcccCCcCCCCCcEEecC-CccCEEEEEECCCCCEEEEE--cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINA-HQSELACLALNQTGTMIATA--SSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~-h~~~i~~v~fs~dg~~l~s~--~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +|.++..+    .....+.. ..++|.+++|+|+|+.|+..  ..++. |.+||++ +..+..+.. .....+.|
T Consensus        41 l~~~~~~~----~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~lyd~~-~~~i~~~~~-~~~n~i~w  108 (194)
T PF08662_consen   41 LFYLNEKN----IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLYDVK-GKKIFSFGT-QPRNTISW  108 (194)
T ss_pred             EEEEecCC----CccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEEcCc-ccEeEeecC-CCceEEEE
Confidence            55554433    24444443 35579999999999987654  45678 9999997 777777753 23334665

>KOG1332|consensus

Probab=98.02  E-value=4.9e-06  Score=52.14  Aligned_cols=53  Identities=28%  Similarity=0.469  Sum_probs=46.3

Q ss_pred             cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940          25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w   78 (78)
                      ..|.+.|..+..+.-|++|||++.|++ |+||.++++   ..+.++.+|..|+- +.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~t-VkIf~v~~n~~s~ll~~L~Gh~GPVwqv~w   64 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGT-VKIFEVRNNGQSKLLAELTGHSGPVWKVAW   64 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCcc-EEEEEEcCCCCceeeeEecCCCCCeeEEee
Confidence            479999999999999999999999999 999998865   46789999999975 555

>KOG1408|consensus

Probab=98.02  E-value=1.1e-05  Score=56.87  Aligned_cols=56  Identities=21%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEc--CCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATAS--SKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~--~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +..+.+..|..++.+++||++|+++++|.  .... +++|++.....+.++-.|+..++
T Consensus        69 tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa-~kVw~la~h~vVAEfvdHKY~vt  126 (1080)
T KOG1408|consen   69 TQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPA-SKVWSLAFHGVVAEFVDHKYNVT  126 (1080)
T ss_pred             chhheecccCcceeEEEEcCCCcEEEecccCCCcc-ceeeeeccccchhhhhhccccce
Confidence            36666778889999999999999999986  5556 99999998777777777665544

>KOG0974|consensus

Probab=98.01  E-value=2.4e-05  Score=56.16  Aligned_cols=48  Identities=21%  Similarity=0.302  Sum_probs=41.8

Q ss_pred             EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE-EeeCCC
Q psy1940          23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV-ELRRGS   71 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~-~~~~~~   71 (78)
                      .+.+|.+.|-++.|+.||+++++.|+|.+ +|+|++.+++.+. ...+|.
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccccccc
Confidence            57899999999999999999999999999 9999999987665 444443

>KOG2111|consensus

Probab=98.00  E-value=3.3e-05  Score=49.78  Aligned_cols=48  Identities=17%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             EEEcccCCcCCCCCcEEecC--CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINA--HQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~--h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      |||..++.     .++.++.  ....|.+++|||++++|+++|..|+ +.||.++.
T Consensus       208 IFdt~~g~-----~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~  257 (346)
T KOG2111|consen  208 IFDTEDGT-----LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRD  257 (346)
T ss_pred             EEEcCCCc-----EeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeec
Confidence            78888776     7777863  3557999999999999999999999 99997765

>KOG1036|consensus

Probab=97.96  E-value=8.1e-06  Score=52.20  Aligned_cols=42  Identities=21%  Similarity=0.455  Sum_probs=37.4

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      ||++++|+|--..||||+.||. |.+||+.+.+.+.++.+...
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~~~~  275 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAKYET  275 (323)
T ss_pred             EeceeEeccccceEEecCCCce-EEEccCcchhhhhhccCCCC
Confidence            6899999999889999999999 99999999988888776544

>KOG4378|consensus

Probab=97.96  E-value=5.2e-05  Score=51.63  Aligned_cols=65  Identities=18%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~~-~~w   78 (78)
                      +||++...     ...++. ...|..+++|+++|.+|++|...|. +..||++.. .++..+..|...++ +.|
T Consensus       235 ~yD~~s~~-----s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  235 IYDIRSQA-----STDRLT-YSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             Eeeccccc-----ccceee-ecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeeecccceeEEEe
Confidence            78887543     334442 3458899999999999999999999 999999975 46677777877766 554

>KOG0301|consensus

Probab=97.95  E-value=2.5e-05  Score=54.45  Aligned_cols=52  Identities=23%  Similarity=0.361  Sum_probs=44.6

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +..++|.+|.+-|+.+++-+++ .+++++.||. |+.||+ +|.++.++.+|..-
T Consensus       170 ~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~ghtn~  221 (745)
T KOG0301|consen  170 TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHGHTNF  221 (745)
T ss_pred             chhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeeccceE
Confidence            5889999999999999998665 5889999999 999998 78888888887643

>KOG1007|consensus

Probab=97.95  E-value=3.3e-05  Score=49.53  Aligned_cols=52  Identities=13%  Similarity=0.171  Sum_probs=45.6

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      |+. |||.+...    .+++.+.+|.-.+++|.|+|. ..++.+++.|.. |.+|.+.+
T Consensus       238 yvr-iWD~R~tk----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~s  290 (370)
T KOG1007|consen  238 YVR-IWDTRKTK----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASS  290 (370)
T ss_pred             cEE-EEeccCCC----ccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccc
Confidence            788 99999987    689999999999999999995 467889999998 99987654

>KOG1524|consensus

Probab=97.94  E-value=2.4e-06  Score=58.33  Aligned_cols=52  Identities=17%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      .-+...+|.+.+.+-.|+|||.-|+|+++||. |++|. ++|....++-....+
T Consensus        96 VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~-iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   96 VERSISAHAAAISSGRWSPDGAGLLTAGEDGV-IKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             hhhhhhhhhhhhhhcccCCCCceeeeecCCce-EEEEe-ccchHHHHHhhcCce
Confidence            44556789999999999999999999999999 99997 566544444333333

>KOG0772|consensus

Probab=97.93  E-value=2.8e-05  Score=52.96  Aligned_cols=52  Identities=27%  Similarity=0.482  Sum_probs=39.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-----CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-----AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-----~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      |. |||+.+..    +..++|.     +..-++.+.+|+|||+.+|+|..||+ |.+||.++.
T Consensus       293 lR-iWdv~~~k----~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~  349 (641)
T KOG0772|consen  293 LR-IWDVNNTK----SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR  349 (641)
T ss_pred             EE-EEecCCch----hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc
Confidence            56 89998765    3444442     22335678899999999999999999 999997654

>KOG1188|consensus

Probab=97.93  E-value=2.4e-05  Score=50.77  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      +||..++     +.+..|.++.+.++.++|..  .+..+.+++.||. |++||+|+......
T Consensus        54 lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~-Vr~wD~Rs~~e~a~  109 (376)
T KOG1188|consen   54 LYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT-VRLWDIRSQAESAR  109 (376)
T ss_pred             EEeccch-----hhhheecCCCCcccceEEecCCCCCeeEEeccCCe-EEEEEeecchhhhh
Confidence            5665554     38888999999999999976  5678999999999 99999998754433

>KOG2394|consensus

Probab=97.91  E-value=7.5e-06  Score=55.77  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=38.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+..+.-.++.|+.++|+|||++||+.+.||. +||||..+.+++-.++
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mk  329 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMK  329 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHH
Confidence            34444445668999999999999999999999 9999988776554443

>KOG1036|consensus

Probab=97.87  E-value=0.0001  Score=47.33  Aligned_cols=51  Identities=24%  Similarity=0.417  Sum_probs=41.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      .+|+...      ....+..|..+|.||.+++....+++|+-|++ |++||.+...+.
T Consensus        79 ~~Dln~~------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~-ik~wD~R~~~~~  129 (323)
T KOG1036|consen   79 RYDLNTG------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKT-IKFWDPRNKVVV  129 (323)
T ss_pred             EEEecCC------cceeeccCCCceEEEEeeccCCeEEEcccCcc-EEEEeccccccc
Confidence            5665433      45567789999999999998889999999999 999999954333

>KOG4547|consensus

Probab=97.85  E-value=0.00014  Score=49.68  Aligned_cols=54  Identities=19%  Similarity=0.262  Sum_probs=47.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      ..+.+...+..+.++..+|||+.|++++  +. |.+||+++++.+..|.+|..+++.
T Consensus       136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~-ik~~~~~~kevv~~ftgh~s~v~t  189 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQ-IKVLDIETKEVVITFTGHGSPVRT  189 (541)
T ss_pred             eeeeeccCCCccceEEEcCCCCEEEecc--ce-EEEEEccCceEEEEecCCCcceEE
Confidence            5666667777888999999999999988  44 999999999999999999999873

>KOG0301|consensus

Probab=97.84  E-value=0.00016  Score=50.55  Aligned_cols=54  Identities=15%  Similarity=0.279  Sum_probs=44.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +|++ .++     ++..+.+|++-+++++..+++..++++++|++ +|||+..  ++.+.+..
T Consensus       204 ~w~~-~ge-----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l  257 (745)
T KOG0301|consen  204 LWDL-DGE-----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL  257 (745)
T ss_pred             EEec-cCc-----eeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec
Confidence            6777 444     88889999999999998888889999999999 9999866  56665554

>KOG1274|consensus

Probab=97.83  E-value=0.0001  Score=52.75  Aligned_cols=40  Identities=23%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             CcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          20 SPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ....++  -+...++.++|+|.|+|||+++.||. |.|||..+
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWNVDT  263 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEeccc
Confidence            444444  23444899999999999999999999 99999985

>KOG1524|consensus

Probab=97.83  E-value=5.4e-05  Score=51.96  Aligned_cols=57  Identities=16%  Similarity=0.272  Sum_probs=46.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .+...++|.+-|.++.|++..+.+++|++|-. .+|||.. |..+++-..|..|++ +.|
T Consensus       178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~S~~~ey~ITSva~  235 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFTSAAEEYAITSVAF  235 (737)
T ss_pred             ceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-CcccccCChhccceeeeee
Confidence            45557899999999999999999999999999 9999965 666666666666655 555

>KOG4328|consensus

Probab=97.82  E-value=2.2e-05  Score=52.49  Aligned_cols=49  Identities=29%  Similarity=0.415  Sum_probs=42.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +||++...    +....++.|+..|.+++++|. -.+|+|++.|++ .+|||++.
T Consensus       305 ~iD~R~~~----s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~  354 (498)
T KOG4328|consen  305 VIDLRTDG----SEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQ  354 (498)
T ss_pred             EEEeecCC----ccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhh
Confidence            78888765    456677889999999999995 578999999999 99999985

>KOG1408|consensus

Probab=97.81  E-value=8.3e-05  Score=52.60  Aligned_cols=65  Identities=20%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEec---CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN---AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~---~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. |||+.++.     ..+.|+   .|.+..-.+...|.|-++++...|++ +-++|..+|+++..+.+|...++
T Consensus       620 ir-if~i~sgK-----q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  620 IR-IFDIESGK-----QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTGHSEAVT  687 (1080)
T ss_pred             eE-EEeccccc-----eeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcCcchhee
Confidence            45 78888775     788886   46666777889999999999999999 99999999999999999987765

>KOG4283|consensus

Probab=97.73  E-value=0.00019  Score=46.34  Aligned_cols=68  Identities=16%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC---CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG---TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg---~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ||+ +||..+..     ....|. -.+.|++-++||..   .++|+|..|-. |++-|+.+|.+-+.+.+|.+.+= +-|
T Consensus       125 tlK-VWDtnTlQ-----~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~-VrLCDi~SGs~sH~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  125 TLK-VWDTNTLQ-----EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQ-VRLCDIASGSFSHTLSGHRDGVLAVEW  196 (397)
T ss_pred             eEE-Eeecccce-----eeEEee-cCceeehhhcChhhhcceEEEEecCCCc-EEEEeccCCcceeeeccccCceEEEEe
Confidence            788 99987765     555554 45678889999954   47788888888 99999999999999999987653 444

>KOG4714|consensus

Probab=97.71  E-value=2.3e-05  Score=49.58  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +||.++..    -..-.+.+|+.+|+.|-|.| ++..|.++++||. +--||..+
T Consensus       206 l~d~rn~~----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNVA----MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST  255 (319)
T ss_pred             EEEccccc----chHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC
Confidence            89999875    35555679999999999999 7899999999999 99999874

>KOG2919|consensus

Probab=97.67  E-value=7.5e-05  Score=48.55  Aligned_cols=61  Identities=18%  Similarity=0.373  Sum_probs=44.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEE-EEEE--CCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELA-CLAL--NQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRGSD   72 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~-~v~f--s~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~   72 (78)
                      .||+++..    ..+..+..|.+--+ .|-|  .|+|+.|++|+.||. |++||..+ |..+..+..+++
T Consensus       277 ~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  277 CWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             EEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCcccccccccc
Confidence            79999875    46666777755222 3444  789999999999999 99999987 654555544443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.67  E-value=0.00025  Score=33.71  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      ..+|.+++|+|....||.+..+|. |.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCc
Confidence            446899999999999999999999 999988 444

>KOG0644|consensus

Probab=97.66  E-value=1e-05  Score=57.61  Aligned_cols=63  Identities=25%  Similarity=0.374  Sum_probs=55.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ||...+..     +....+||.+.|..++-+....++++++.|.. |++|-++++.++..+++|...++
T Consensus       216 iwS~et~~-----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v-IrvWrl~~~~pvsvLrghtgavt  278 (1113)
T KOG0644|consen  216 IWSMETAR-----CLASCRGHSGDITDLAVSSNNTMIAAASNDKV-IRVWRLPDGAPVSVLRGHTGAVT  278 (1113)
T ss_pred             eeeccchh-----hhccCCCCccccchhccchhhhhhhhcccCce-EEEEecCCCchHHHHhcccccee
Confidence            66655554     88889999999999999999999999999998 99999999999999999886655

>KOG0644|consensus

Probab=97.66  E-value=3.8e-05  Score=54.86  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=48.2

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++.+.+|.+.|+|+.|...|.++.+++.|.- ++||.+.++.++...++|..-++
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~l-vKiwS~et~~~lAs~rGhs~dit  236 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRL-VKIWSMETARCLASCRGHSGDIT  236 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccce-eeeeeccchhhhccCCCCccccc
Confidence            3445789999999999999999999999998 99999999999999999876543

>KOG0322|consensus

Probab=97.65  E-value=0.00011  Score=46.63  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ....|..+.+.||++.+||++-|+. ||||.-++...+..+.-|++.++
T Consensus       250 knpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  250 KNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKYHSAGVN  297 (323)
T ss_pred             cCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhhhhccee
Confidence            3556888999999999999999999 99999999999999988877765

>KOG1063|consensus

Probab=97.64  E-value=0.00038  Score=48.80  Aligned_cols=53  Identities=13%  Similarity=0.373  Sum_probs=43.7

Q ss_pred             CcEEecCCccCEEEEEECCCCC---EEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGT---MIATASSKGTLIRVWDTLKK--VQLVELRRGSDP   73 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~---~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~   73 (78)
                      .+.++++|.++|+|+.|-|+.+   .+++|+.|+. |++|.++..  .++..+++|..+
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~-v~lW~l~~~~~~~i~~~~g~~~~  103 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGR-VILWKLRDEYLIKIYTIQGHCKE  103 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCc-EEEEEEeehheEEEEeecCccee
Confidence            6778899999999999998877   8999999999 999998843  355666665444

>KOG4640|consensus

Probab=97.63  E-value=0.00021  Score=49.59  Aligned_cols=46  Identities=28%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CcEEecCCccCEE-EEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940          20 SPVTINAHQSELA-CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus        20 ~~~~~~~h~~~i~-~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      .+-+++-|.-++. +++|.|||+.||.|-.||+ |++.|+.++..+..
T Consensus        53 Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   53 RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS   99 (665)
T ss_pred             eeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence            4455565655666 9999999999999999999 99999999877766

>KOG2919|consensus

Probab=97.63  E-value=0.0001  Score=47.96  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEeeCCCC-cEEEEeeCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVWDTLKK-VQLVELRRGS   71 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~d~~~~-~~~~~~~~~~   71 (78)
                      |.| -++++.-.  ...+.+.+-+|++.|.-+.|.+||+.|.+|++. .. |.+||++.. ..+..+.+|.
T Consensus       228 Y~q-~~giy~~~--~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk-Il~WDiR~~~~pv~~L~rhv  294 (406)
T KOG2919|consen  228 YGQ-RVGIYNDD--GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK-ILCWDIRYSRDPVYALERHV  294 (406)
T ss_pred             ccc-eeeeEecC--CCCceeeecccCCCeeeEEeccCcCeecccccCCCe-EEEEeehhccchhhhhhhhc
Confidence            445 45555543  335788888999999999999999999998664 45 999999853 4556665554

>KOG0321|consensus

Probab=97.62  E-value=5.9e-05  Score=52.34  Aligned_cols=49  Identities=16%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             EEEcccCCcCCCCCcEE--ecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVT--INAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~--~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      .||+....     +...  +-+|.+.+.+++|.|+ -..|++|+.|+. |.|||++-.
T Consensus       126 ~Wdvk~s~-----l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~-illWD~R~n  177 (720)
T KOG0321|consen  126 PWDVKTSR-----LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE-ILLWDCRCN  177 (720)
T ss_pred             eeeeccce-----eecceeecccccccchhhhccCCCcceeeccCCCc-EEEEEEecc
Confidence            79988765     4444  7799999999999994 568999999999 999998843

>KOG3881|consensus

Probab=97.58  E-value=0.00013  Score=48.15  Aligned_cols=54  Identities=13%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             EEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      .||++...     .... +.+-.+.|++|.-.|.+.+|++++.|.. +||+|+.+.+.+..
T Consensus       273 ~FD~r~~k-----l~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~k  327 (412)
T KOG3881|consen  273 KFDLRGGK-----LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHK  327 (412)
T ss_pred             eecccCce-----eeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhh
Confidence            67877664     4444 7888999999999999999999999999 99999999765543

>KOG4497|consensus

Probab=97.57  E-value=0.00037  Score=45.63  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      .+| +|++.+.+     -...++..+.++.+++|||||+.+ .+...|-. |.+|.+.+.++.
T Consensus        72 ~vq-vwsl~Qpe-----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~~~~  127 (447)
T KOG4497|consen   72 KVQ-VWSLVQPE-----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQKGY  127 (447)
T ss_pred             eEE-EEEeecce-----eEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccceeE
Confidence            367 89998876     777788888899999999999654 56677777 999998876543

>KOG1539|consensus

Probab=97.56  E-value=0.00062  Score=48.63  Aligned_cols=63  Identities=13%  Similarity=0.173  Sum_probs=56.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +| ||.++++.     .+++|+++...|+++.=+|--..+|.|..+|. |.+++++.++.+.+++.....
T Consensus       184 lq-l~Nvrt~K-----~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~-ViifNlK~dkil~sFk~d~g~  246 (910)
T KOG1539|consen  184 LQ-LWNVRTGK-----VVYTFQEFFSRITAIEQSPALDVVAIGLENGT-VIIFNLKFDKILMSFKQDWGR  246 (910)
T ss_pred             EE-EEEeccCc-----EEEEecccccceeEeccCCcceEEEEeccCce-EEEEEcccCcEEEEEEccccc
Confidence            57 89998876     99999999999999999998889999999999 999999999999999875333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.52  E-value=0.00066  Score=45.16  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~   63 (78)
                      ..+.+..|...+.+.+|||||+.|+..+.+   .. |.+||+.++..
T Consensus       195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~-i~i~dl~tg~~  240 (429)
T PRK01742        195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQ-LVVHDLRSGAR  240 (429)
T ss_pred             CceEeccCCCccccceEcCCCCEEEEEEecCCCcE-EEEEeCCCCce
Confidence            456667788889999999999999887643   36 99999988753

>KOG1587|consensus

Probab=97.50  E-value=0.00079  Score=46.58  Aligned_cols=67  Identities=22%  Similarity=0.447  Sum_probs=47.5

Q ss_pred             eEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcE--EEEe----eCCCCCeE-Ee
Q psy1940           6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQ--LVEL----RRGSDPAT-LY   77 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~--~~~~----~~~~~~~~-~~   77 (78)
                      ++|++.+..    ..-..+. -..+|.++.|+| +.+.++.|..+|. |-+||++.+..  ...+    ..|..++. ++
T Consensus       225 ~vW~~~~p~----~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~Gq-V~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv  298 (555)
T KOG1587|consen  225 LVWSLKNPN----TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQ-VVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV  298 (555)
T ss_pred             EEEecCCCC----CceEEEe-cCCceeEEEeccCCcceEEeeccCce-EEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence            478888764    3444443 467899999999 6789999999999 99999997654  2222    23555554 66


Q ss_pred             C
Q psy1940          78 W   78 (78)
Q Consensus        78 w   78 (78)
                      |
T Consensus       299 W  299 (555)
T KOG1587|consen  299 W  299 (555)
T ss_pred             E
Confidence            6

>KOG2106|consensus

Probab=97.50  E-value=0.0012  Score=45.24  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ...++.....++++++|+|+|.+||.|+.|+. |.+|-+..
T Consensus       439 ~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~  478 (626)
T KOG2106|consen  439 DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSA  478 (626)
T ss_pred             eeEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECC
Confidence            33344444779999999999999999999999 99997664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.48  E-value=0.00093  Score=44.01  Aligned_cols=59  Identities=20%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. ++|+.+..     .+.+++...+ ..++++|+||++++++. .++. +.++|.++.+.++.++.+
T Consensus        60 vs-viD~~~~~-----~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~-v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   60 VS-VIDLATGK-----VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGT-VSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EE-EEETTSSS-----EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTE-EEEEETTT--EEEEEE--
T ss_pred             EE-EEECCccc-----EEEEEecCCC-cceEEEcCCCCEEEEEecCCCc-eeEeccccccceeecccc
Confidence            45 78888776     8888876554 46799999999998774 5777 999999999998888643

...

>KOG3881|consensus

Probab=97.46  E-value=0.00063  Score=44.99  Aligned_cols=58  Identities=16%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      ++. +||.+..-    +++.+|.--..+|+++...|+|++++++...+. +..||.+.++.+..
T Consensus       227 qvR-~YDt~~qR----RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  227 QVR-LYDTRHQR----RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGC  284 (412)
T ss_pred             eEE-EecCcccC----cceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeecc
Confidence            466 88888654    688999888899999999999999999999999 99999999987765

>KOG0307|consensus

Probab=97.45  E-value=0.00018  Score=52.34  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             EEEcccC-CcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcE
Q psy1940           7 SQDLSST-ELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus         7 i~d~~~~-~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      +||.... ..++...+.+.+.|.++|..+.|++.. +.||+|+.||. |.|||++.-+.
T Consensus        94 ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge-I~iWDlnn~~t  151 (1049)
T KOG0307|consen   94 LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE-ILIWDLNKPET  151 (1049)
T ss_pred             EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc-EEEeccCCcCC
Confidence            5665543 122334677788999999999999965 59999999999 99999986443

>KOG2695|consensus

Probab=97.44  E-value=0.0004  Score=45.62  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcE---EEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQ---LVELRRGSD   72 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~---~~~~~~~~~   72 (78)
                      .+|++....++.-+.+.+. |...|.++..-. ++.+|.+.+++|. |.+||.+-.++   +.++++|.+
T Consensus       278 ~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN  345 (425)
T KOG2695|consen  278 VIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVN  345 (425)
T ss_pred             EEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccc
Confidence            5688887666666777774 888999886654 6789999999999 99999997666   888888753

>KOG1912|consensus

Probab=97.40  E-value=0.00038  Score=49.73  Aligned_cols=66  Identities=24%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCC------CC------EEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT------GT------MIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d------g~------~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +.|.++..     .++++..|+..|++|.|.|-      +.      .||++...|. |.+||...+..+..+.++.+++
T Consensus        39 VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr-Iil~d~~~~s~~~~l~~~~~~~  112 (1062)
T KOG1912|consen   39 VVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR-IILVDFVLASVINWLSHSNDSV  112 (1062)
T ss_pred             EEehhhhh-----hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc-EEEEEehhhhhhhhhcCCCcch
Confidence            67877776     88899999999999999882      22      6778888999 9999999999999999888887


Q ss_pred             E-EeC
Q psy1940          75 T-LYW   78 (78)
Q Consensus        75 ~-~~w   78 (78)
                      . +||
T Consensus       113 qdl~W  117 (1062)
T KOG1912|consen  113 QDLCW  117 (1062)
T ss_pred             hheee
Confidence            6 888

>KOG1538|consensus

Probab=97.32  E-value=0.0005  Score=48.61  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .|+.++|-|||+.|+.+..+.  +.+||++.|..++.+++|.+.+. +.|
T Consensus        14 ci~d~afkPDGsqL~lAAg~r--lliyD~ndG~llqtLKgHKDtVycVAy   61 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSR--LLVYDTSDGTLLQPLKGHKDTVYCVAY   61 (1081)
T ss_pred             chheeEECCCCceEEEecCCE--EEEEeCCCcccccccccccceEEEEEE
Confidence            788999999999988877554  89999999999999999998876 444

>KOG0280|consensus

Probab=97.31  E-value=0.0012  Score=42.48  Aligned_cols=56  Identities=25%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCC-CcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLK-KVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~-~~~~~~   66 (78)
                      -||+|...   .-..+..+.|...|.+|.=|| ++.+++||+-|.. |++||.++ +++++.
T Consensus       192 ~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~  249 (339)
T KOG0280|consen  192 CWDIRIPK---TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFK  249 (339)
T ss_pred             EEEecCCc---ceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCcccc
Confidence            68988332   012333567899999998776 6899999999999 99999984 555543

>KOG2139|consensus

Probab=97.31  E-value=0.0016  Score=43.10  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT   58 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~   58 (78)
                      |||...+.     ..-.....-+.++-+.|||||.+|.+++.|+. .++|..
T Consensus       222 iWdpdtg~-----~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e  267 (445)
T KOG2139|consen  222 IWDPDTGQ-----KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQE  267 (445)
T ss_pred             EEcCCCCC-----cccccccCCCceeeEEEcCCCCEEEEecccce-eeeehh
Confidence            78876654     22112344567788999999999999999999 999943

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.29  E-value=0.0042  Score=40.88  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=45.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEEe-eCCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVEL-RRGSDP   73 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~~-~~~~~~   73 (78)
                      ++|..+..     ....+.. ...+..++|+|||+ +|++.. .++. |.++|+.+++.+..+ +-+..|
T Consensus       283 ViD~~t~k-----vi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i~~i~~vg~~P  345 (352)
T TIGR02658       283 VVDAKTGK-----RLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKELSSVNQLGRGP  345 (352)
T ss_pred             EEECCCCe-----EEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEEeeeccCCCCC
Confidence            66766554     6666653 34788999999999 888666 5787 999999999999998 544433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.28  E-value=0.0021  Score=44.24  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      .....+.|.+++|+.+.|+.|..||+ |.+||...+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~  292 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGV  292 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCe
Confidence            45668889999999999999999999 9999988764

>KOG3914|consensus

Probab=97.25  E-value=0.00034  Score=46.11  Aligned_cols=41  Identities=20%  Similarity=0.373  Sum_probs=36.0

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ||+.-|..++.- ++..|++++.|++ +++||+++|+++.++.
T Consensus       192 GH~eFVS~isl~-~~~~LlS~sGD~t-lr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  192 GHKEFVSTISLT-DNYLLLSGSGDKT-LRLWDITSGKLLDTCD  232 (390)
T ss_pred             ccHhheeeeeec-cCceeeecCCCCc-EEEEecccCCcccccc
Confidence            799999999987 4567999999999 9999999999887765

>KOG0321|consensus

Probab=97.23  E-value=0.0007  Score=47.22  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             EEEcccCCcC-CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE--eeCCCCCe
Q psy1940           7 SQDLSSTELS-SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE--LRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~-~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~--~~~~~~~~   74 (78)
                      ++|..+.... +....+.+..|.+.|-.++|-|....|++++.|.+ +++||++.+.++..  +.+|...+
T Consensus        78 l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT-~r~Wdvk~s~l~G~~~~~GH~~Sv  147 (720)
T KOG0321|consen   78 LFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDST-IRPWDVKTSRLVGGRLNLGHTGSV  147 (720)
T ss_pred             eecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCce-eeeeeeccceeecceeeccccccc
Confidence            4555544321 11234566799999999999997679999999999 99999998887755  66665443

>KOG4378|consensus

Probab=97.23  E-value=0.00089  Score=45.86  Aligned_cols=59  Identities=24%  Similarity=0.255  Sum_probs=48.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++ |||++..-     +.+.+..|+..|.++.++....+||+++..|. |.|..+.++..-..+..
T Consensus       103 Vk-iwdl~~kl-----~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd-iiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen  103 VK-IWDLRAKL-----IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD-IIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             ee-ehhhHHHH-----HhhhccCCcceeEEEEecCCcceeEEeccCCc-EEEEecccCccccceec
Confidence            45 89988543     67777899999999999999999999999999 99999887765555543

>KOG2445|consensus

Probab=97.20  E-value=0.00039  Score=44.95  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=39.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC---CCcEEEEeeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL---KKVQLVELRR   69 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~---~~~~~~~~~~   69 (78)
                      .+..+..|+++|+.+.|+-.|+.|++.+.||. +|+|...   .-+|...+..
T Consensus       280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKANYNNLWKCTSVLKA  331 (361)
T ss_pred             EeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhhhhhhhheeeeEEec
Confidence            34556789999999999999999999999999 9999644   2245555543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.19  E-value=0.0011  Score=42.24  Aligned_cols=46  Identities=15%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      .++.|..++.||||+.||+...+|. |-+|++.+-++....+....|
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhcccchhhCC
Confidence            4678999999999999999999999 999999988777776654433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.19  E-value=0.0047  Score=41.14  Aligned_cols=43  Identities=9%  Similarity=-0.005  Sum_probs=34.7

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcC---CCCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASS---KGTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~---d~~~i~i~d~~~~~~   63 (78)
                      ..+.+..|...+.+.+|+|||+.|+..+.   +.. |.+||+.++..
T Consensus       193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~-i~~~dl~~g~~  238 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPR-VYLLDLETGQR  238 (435)
T ss_pred             CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCE-EEEEECCCCcE
Confidence            55667778889999999999999887653   356 99999988764

>KOG2079|consensus

Probab=97.17  E-value=0.00097  Score=48.88  Aligned_cols=48  Identities=25%  Similarity=0.475  Sum_probs=42.0

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .+++|.+++|+.||+.++.|-.+|. |.+||+..++.++.+..+..|.+
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccc
Confidence            4679999999999999999999999 99999999998888876666543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=97.15  E-value=0.0041  Score=29.01  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             cCEEEEEECCCC---CEEEEEcCCCCEEEEeeCCCC
Q psy1940          29 SELACLALNQTG---TMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        29 ~~i~~v~fs~dg---~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +.+.+++|||+.   ..|+-+...+. |-++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence            468899999844   58888888888 999999964

It contains a characteristic DLL sequence motif.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.14  E-value=0.0044  Score=39.54  Aligned_cols=37  Identities=35%  Similarity=0.430  Sum_probs=30.7

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      =..++||||++.||.+...|+ |++||+- |..+..++.
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~-i~vfdl~-g~~lf~I~p   82 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGT-IRVFDLM-GSELFVIPP   82 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCe-EEEEecc-cceeEEcCc
Confidence            357999999999999999999 9999986 455556654

>KOG2321|consensus

Probab=97.11  E-value=0.0033  Score=43.76  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      .|++++|+.+|-.++.|..+|. +.|||++..+++..-
T Consensus       230 svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVK  266 (703)
T ss_pred             cceEEEecCCceeEEeeccCCc-EEEEEcccCCceeec
Confidence            4899999999999999999999 999999988766543

>KOG0649|consensus

Probab=97.09  E-value=0.0026  Score=40.36  Aligned_cols=48  Identities=21%  Similarity=0.149  Sum_probs=42.1

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .-.+|+++...|..+.+..++.|+. +..||+++|+.-+++++|.+.+.
T Consensus       113 evPeINam~ldP~enSi~~AgGD~~-~y~~dlE~G~i~r~~rGHtDYvH  160 (325)
T KOG0649|consen  113 EVPEINAMWLDPSENSILFAGGDGV-IYQVDLEDGRIQREYRGHTDYVH  160 (325)
T ss_pred             cCCccceeEeccCCCcEEEecCCeE-EEEEEecCCEEEEEEcCCcceee
Confidence            3457899999998888888889998 99999999999999999988764

>KOG1645|consensus

Probab=97.07  E-value=0.0011  Score=44.14  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             CcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940          20 SPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      ..+-+.+|...|..++|||... ++..++.+.. |+|.|+++..++..+-.+..+-.+||
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a~~~~wSC~w  243 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIAYNQIWSCCW  243 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheeccCCceeeee
Confidence            4456678888999999999766 7888899998 99999999999999888888888888

>KOG2695|consensus

Probab=97.05  E-value=0.0018  Score=42.61  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEE--EEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELA--CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~--~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++. +||++-...+  +.++++.+|-+.-.  -+-..+....+++++.|.. .|||.+++|..+.+++.
T Consensus       322 kik-LyD~R~~K~~--~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy-tRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  322 KIK-LYDLRATKCK--KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY-TRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cee-Eeeehhhhcc--cceeeeecccccccccccccccccceEEEccCeeE-EEEEecccCceeeccCC
Confidence            356 8999887622  24888999965433  2344666678888999999 99999999999888764

>KOG1963|consensus

Probab=97.00  E-value=0.0031  Score=45.05  Aligned_cols=54  Identities=19%  Similarity=0.362  Sum_probs=42.9

Q ss_pred             CCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          18 SSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        18 ~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ....+.+.=|.++|++++|++||.+|++|+..+. .-+|...+++. +-+++-..+
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~k-qfLPRLgs~  294 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGKK-QFLPRLGSP  294 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEeecccceE-EEEEeecCCCc-ccccccCCe
Confidence            3456666678889999999999999999999998 99999998873 444443343

>KOG4227|consensus

Probab=96.98  E-value=0.00075  Score=45.19  Aligned_cols=40  Identities=15%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +.+-+.+|.+-|+++.||..|.+|++|+.|.. +++|.+..
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~-~~~W~~de   87 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMH-GRVWNVDE   87 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcce-eeeechHH
Confidence            34445789999999999999999999999999 99998763

>KOG1409|consensus

Probab=96.97  E-value=0.0027  Score=41.72  Aligned_cols=54  Identities=22%  Similarity=0.393  Sum_probs=43.9

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE-EEeeCCCCC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL-VELRRGSDP   73 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~-~~~~~~~~~   73 (78)
                      ..+.++.+|.+++.+.+|.|....|.++.+|.. +.+||+.-++-+ .++.+|.+.
T Consensus       188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~gh~~k  242 (404)
T KOG1409|consen  188 QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQGHNDK  242 (404)
T ss_pred             ceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeeccchhh
Confidence            478889999999999999998899999999999 999998755433 444454443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.95  E-value=0.0086  Score=39.90  Aligned_cols=32  Identities=19%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             EEEEEECCCCCEEEEEc-CCCCEEEEe--eCCCCcE
Q psy1940          31 LACLALNQTGTMIATAS-SKGTLIRVW--DTLKKVQ   63 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~-~d~~~i~i~--d~~~~~~   63 (78)
                      ...++|+|||+.|+.++ .++. +.||  |+.++..
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~-~~Iy~~d~~~~~~  284 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGV-LNIYVMGANGGTP  284 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCc-EEEEEEECCCCCe
Confidence            34689999999888764 6787 7766  6655554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.95  E-value=0.005  Score=41.04  Aligned_cols=43  Identities=23%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~   63 (78)
                      ..+.+..+...+.+.+|+|||+.|+..+.+   .. +.+||+.++..
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~-l~~~dl~~g~~  240 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSA-IYVQDLATGQR  240 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcE-EEEEECCCCCE
Confidence            455666777788999999999999987633   36 88999988764

>KOG2048|consensus

Probab=96.86  E-value=0.011  Score=41.55  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      -||+.+..     ....+....++|++++.+|.++.++.+++||. +..++..+++..+.
T Consensus        94 EwDl~~lk-----~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv-l~~~s~~p~~I~~~  147 (691)
T KOG2048|consen   94 EWDLHTLK-----QKYNIDSNGGAIWSIAINPENTILAIGCDDGV-LYDFSIGPDKITYK  147 (691)
T ss_pred             EEecccCc-----eeEEecCCCcceeEEEeCCccceEEeecCCce-EEEEecCCceEEEE
Confidence            58988876     77888888999999999999999999999997 99999888765544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.85  E-value=0.011  Score=39.50  Aligned_cols=44  Identities=16%  Similarity=0.097  Sum_probs=33.7

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQL   64 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~   64 (78)
                      ..+.+..+...+.+.+|+|||+.|+..+.+   .. |.+||+.+++..
T Consensus       187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~-I~~~dl~~g~~~  233 (427)
T PRK02889        187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPV-VYVHDLATGRRR  233 (427)
T ss_pred             CceEeccCCCCcccceEcCCCCEEEEEEccCCCcE-EEEEECCCCCEE
Confidence            445566677889999999999999876532   35 889999888653

>KOG1334|consensus

Probab=96.85  E-value=0.0011  Score=45.05  Aligned_cols=51  Identities=22%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ....+..|.+-++.|.|+..|+.|++++.|.. |.+||=.++.....++.++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~~~~~~l~f~SGH  184 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWVSGSPKLSFESGH  184 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccce-EEeehhhccCccccccccc
Confidence            45667899999999999999999999999999 9999988777766666443

>KOG0771|consensus

Probab=96.84  E-value=0.0054  Score=40.80  Aligned_cols=42  Identities=17%  Similarity=0.392  Sum_probs=36.4

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ...|++++-|+||++++.|+.||. |.|++..+-+.++..+..
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~lq~~~~vk~a  322 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGS-VAIYDAKSLQRLQYVKEA  322 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCc-EEEEEeceeeeeEeehhh
Confidence            357899999999999999999999 999999887777766643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.84  E-value=0.011  Score=26.47  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940          38 QTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus        38 ~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      |+|++|+++. .++. |.++|..++..+..++-+..|..++
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECCCCCceEE
Confidence            6788777665 4566 9999999999999998877777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2110|consensus

Probab=96.80  E-value=0.0077  Score=39.80  Aligned_cols=50  Identities=10%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCc--cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQ--SELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~--~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      +|.+.+++     .+..|+...  -.|.+++|+||+.+|++.+..++ |.+|.+....
T Consensus       200 Vf~v~~G~-----kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~  251 (391)
T KOG2110|consen  200 VFSVPEGQ-----KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVS  251 (391)
T ss_pred             EEEcCCcc-----EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccc
Confidence            56665554     777776443  24679999999999999999999 9999876543

>KOG0642|consensus

Probab=96.79  E-value=0.0022  Score=44.13  Aligned_cols=51  Identities=22%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +.++...+|...+.++++.|.|-+|++++.|+. +++|....-.++.....|
T Consensus       522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeeccccc
Confidence            377888899999999999999999999999999 999988766666555444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.69  E-value=0.016  Score=38.16  Aligned_cols=59  Identities=14%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC----------CCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS----------KGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~----------d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ++|..+.+     .+.+++....+- .+ +||||+.|+.+..          +.. |.+||+.+.+.+.+++-..+|
T Consensus        31 ViD~~~~~-----v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~-V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        31 TIDGEAGR-----VLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDY-VEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             EEECCCCE-----EEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCE-EEEEECccCcEEeEEccCCCc
Confidence            44555443     566666443332 24 9999999998866          556 999999999999888865543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2055|consensus

Probab=96.66  E-value=0.0073  Score=40.97  Aligned_cols=40  Identities=10%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.|..+.|+.||+.|++++.+|. |-+||++...+++.+-
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGE-VYVWNLRQNSCLHRFV  383 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCce-EEEEecCCcceEEEEe
Confidence            345778999999999999999999 9999999998887774

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.64  E-value=0.014  Score=38.16  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=33.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQL   64 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~   64 (78)
                      ..+.+..+...+.+.+|+|||++|+..+.+   .. |.+||+.++...
T Consensus       181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~-i~v~d~~~g~~~  227 (417)
T TIGR02800       181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPE-IYVQDLATGQRE  227 (417)
T ss_pred             CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcE-EEEEECCCCCEE
Confidence            445555666678889999999999887644   36 999999887543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240|consensus

Probab=96.63  E-value=0.0024  Score=47.54  Aligned_cols=41  Identities=24%  Similarity=0.471  Sum_probs=34.7

Q ss_pred             CCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCC
Q psy1940          19 SSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ..+..+..|+..+..++-+++ +.+++|||.||+ |++||.+.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k 1080 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRK 1080 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehh
Confidence            467788889888888887765 599999999999 99999773

>KOG0280|consensus

Probab=96.62  E-value=0.006  Score=39.42  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=36.9

Q ss_pred             CcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCC-CCcEE
Q psy1940          20 SPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTL-KKVQL   64 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~-~~~~~   64 (78)
                      .+++.+.|+-+++..+|+. +-+.+++|+.|+. +..||++ ++..+
T Consensus       157 ~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFI  202 (339)
T ss_pred             ecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCccee
Confidence            4557789999999999987 5579999999999 9999999 55544

>KOG1645|consensus

Probab=96.61  E-value=0.0091  Score=40.02  Aligned_cols=52  Identities=13%  Similarity=0.130  Sum_probs=43.4

Q ss_pred             ceeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCC
Q psy1940           2 LYLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         2 ~~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      .+++ |.|+++..     ++.++..| .++++.+|..|. .++++|...|. |.|||++..
T Consensus       216 nkik-i~dlet~~-----~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~-VlvyD~R~~  268 (463)
T KOG1645|consen  216 NKIK-IMDLETSC-----VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM-VLVYDMRQP  268 (463)
T ss_pred             ceEE-EEecccce-----eeeheecc-CCceeeeeccCCcceeEEeccCce-EEEEEccCC
Confidence            3677 88999887     77888888 789999998864 68888999998 999999854

>KOG1523|consensus

Probab=96.58  E-value=0.012  Score=38.44  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=45.5

Q ss_pred             EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940          22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w   78 (78)
                      +.|..-..+|+|-+|++|++.+|.+..... +.||.....   +..+++..|...++ ++|
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~e-vhiy~~~~~~~w~~~htls~Hd~~vtgvdW   63 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHE-VHIYSMLGADLWEPAHTLSEHDKIVTGVDW   63 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCce-EEEEEecCCCCceeceehhhhCcceeEEee
Confidence            344445678999999999999999999998 999987654   46788888888877 776

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.56  E-value=0.028  Score=37.61  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEc---CCCCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATAS---SKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~---~d~~~i~i~d~~~~~~   63 (78)
                      ..+.+..+...+.+.+|||||+.|+..+   .+.. +.++|+.+|+.
T Consensus       190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~-i~i~dl~~G~~  235 (429)
T PRK03629        190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSA-LVIQTLANGAV  235 (429)
T ss_pred             CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcE-EEEEECCCCCe
Confidence            3445555667889999999999998654   2345 88999988753

>KOG1064|consensus

Probab=96.49  E-value=0.002  Score=49.73  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=45.7

Q ss_pred             eEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      |+||..-..  +..+++  ..|.+..+++++-|.-..|.+|+.+|. |.+||++..+.++.++
T Consensus      2318 ~lwDtl~~~--~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2318 CLWDTLLPP--MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             cchhcccCc--ccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHHHHHHHhh
Confidence            467765433  223444  789999999999999999999999999 9999999777665554

>KOG1310|consensus

Probab=96.47  E-value=0.01  Score=41.36  Aligned_cols=48  Identities=10%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             EEEcccCCcCCCCCcEEec-CCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTIN-AHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      |||.....     ..+.+. +|..-|-|+.|-|  ..+.+++|..|.. |++||+.+
T Consensus        76 vWd~~~~K-----llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-i~lfdl~~  126 (758)
T KOG1310|consen   76 VWDPFEYK-----LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-IKLFDLDS  126 (758)
T ss_pred             eecchhcc-----eeeeeecccccceeEEeeeccCCCeEEEeccCcce-EEEEeccc
Confidence            88887654     778776 8999999999999  4568889999999 99999885

>KOG1523|consensus

Probab=96.46  E-value=0.01  Score=38.75  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +..+++..|...|+.|.|+|..+.|++++.|.. ..+|...++
T Consensus        46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~   87 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSG   87 (361)
T ss_pred             eeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCC
Confidence            467889999999999999999999999999999 999987443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.46  E-value=0.025  Score=37.83  Aligned_cols=38  Identities=21%  Similarity=0.149  Sum_probs=26.4

Q ss_pred             CEEEEEECCCCCEEEEE-cCCC--CEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQTGTMIATA-SSKG--TLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~-~~d~--~~i~i~d~~~~~~~~~~~   68 (78)
                      .....+|||||+.|+.. +.++  . |.+||+.++.......
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~-I~~~d~~tg~~~~lt~  284 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLN-LYVMDLASGQIRQVTD  284 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcE-EEEEECCCCCEEEccC
Confidence            34568999999988854 4444  5 7788998876544433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.38  E-value=0.025  Score=37.72  Aligned_cols=52  Identities=13%  Similarity=0.084  Sum_probs=33.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCCC-EEEEeeCCCCcEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKGT-LIRVWDTLKKVQL   64 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~-~i~i~d~~~~~~~   64 (78)
                      +||+..+      ....+..+.+.+.+.+|+|||+.|+ +.+.++. -|.++|+.++...
T Consensus       230 ~~dl~~g------~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        230 LLDLETG------QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EEECCCC------cEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            5566543      2344555666777899999999876 5555554 0555688777553

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.37  E-value=0.024  Score=36.17  Aligned_cols=45  Identities=16%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             CEEEEEECCCCCEEEEEcC-CCCEEEEeeCC--CCc--EEEEeeCCCCCeE
Q psy1940          30 ELACLALNQTGTMIATASS-KGTLIRVWDTL--KKV--QLVELRRGSDPAT   75 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~--~~~--~~~~~~~~~~~~~   75 (78)
                      ....++|+|||++|+++.. +++ |.+|++.  ++.  .+..+..+..|..
T Consensus       275 ~p~~~~~~~dg~~l~va~~~~~~-v~v~~~~~~~g~l~~~~~~~~g~~P~~  324 (330)
T PRK11028        275 QPRGFNIDHSGKYLIAAGQKSHH-ISVYEIDGETGLLTELGRYAVGQGPMW  324 (330)
T ss_pred             cCCceEECCCCCEEEEEEccCCc-EEEEEEcCCCCcEEEccccccCCCceE
Confidence            3457899999999998775 788 9999764  343  3344444445543

>KOG2106|consensus

Probab=96.33  E-value=0.034  Score=38.41  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             EEEcccCCcCCCCCcEEecCC-ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAH-QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h-~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      .|+.+...  -.+....|..+ +.-|.|+.|.++|. ++||..+|. |.||+..+.+..+....|...
T Consensus       226 Fw~~~~~~--l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~-i~Iw~~~~~~~~k~~~aH~gg  289 (626)
T KOG2106|consen  226 FWTLRGGS--LVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGN-ILIWSKGTNRISKQVHAHDGG  289 (626)
T ss_pred             EEEccCCc--eEEEeeccccccceEEEEEEEcCCCC-EEeecCCce-EEEEeCCCceEEeEeeecCCc
Confidence            57666544  11234445443 45789999999997 679999999 999999877666665555443

>KOG1587|consensus

Probab=96.32  E-value=0.006  Score=42.36  Aligned_cols=58  Identities=19%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ....+..|.++|+++.++|-+..+...+.|.+ ++||... ...++..+..+.+.+. +.|
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhhccceeeeeEE
Confidence            34567789999999999998866665555999 9999877 5667766666666443 555

>KOG3914|consensus

Probab=96.31  E-value=0.0078  Score=39.94  Aligned_cols=48  Identities=23%  Similarity=0.146  Sum_probs=37.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +...+-+|-..+..|+++||++++.++..|.. ||+-.......+..+.
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~Iesfc  190 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFC  190 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhc
Confidence            34445689999999999999999999999999 9997655444444443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.30  E-value=0.065  Score=34.82  Aligned_cols=60  Identities=17%  Similarity=0.233  Sum_probs=39.9

Q ss_pred             eeeeEEEcccCCc---CCCCCcEEecCCccCEEEEEECCCCCEEEEEcC-----CCCEEEEeeCC-CCcEEEEeeCC
Q psy1940           3 YLQCSQDLSSTEL---SSSSSPVTINAHQSELACLALNQTGTMIATASS-----KGTLIRVWDTL-KKVQLVELRRG   70 (78)
Q Consensus         3 ~~~~i~d~~~~~~---~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-----d~~~i~i~d~~-~~~~~~~~~~~   70 (78)
                      |+. +||.++...   .....-+.|.+|      ..||+||++|++...     .|. |-|||.. +-..+.+++.+
T Consensus        29 ~~~-v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~-IgVyd~~~~~~ri~E~~s~   97 (305)
T PF07433_consen   29 FAL-VFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV-IGVYDAARGYRRIGEFPSH   97 (305)
T ss_pred             EEE-EEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE-EEEEECcCCcEEEeEecCC
Confidence            456 788877651   111233344455      679999999998643     466 9999998 45677777643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.23  E-value=0.044  Score=36.61  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=27.2

Q ss_pred             ecCCccCEEEEEECCCCCEEE-EEcCCC--CEEEEeeCCCCcEE
Q psy1940          24 INAHQSELACLALNQTGTMIA-TASSKG--TLIRVWDTLKKVQL   64 (78)
Q Consensus        24 ~~~h~~~i~~v~fs~dg~~l~-s~~~d~--~~i~i~d~~~~~~~   64 (78)
                      +..+.+...+.+|+|||+.|+ +.+.++  . |.+||+.++...
T Consensus       243 l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~-Iy~~d~~~g~~~  285 (433)
T PRK04922        243 VASFRGINGAPSFSPDGRRLALTLSRDGNPE-IYVMDLGSRQLT  285 (433)
T ss_pred             eccCCCCccCceECCCCCEEEEEEeCCCCce-EEEEECCCCCeE
Confidence            333444455789999999776 444444  5 888899887653

>KOG1963|consensus

Probab=96.16  E-value=0.031  Score=40.23  Aligned_cols=61  Identities=20%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC---CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG---TMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg---~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++ +|-..++.     +++.+..|..++.++.+.|..   .++.+++.||. |++||-..+..+..+..+.
T Consensus        39 V~-VyS~~Tg~-----~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~-I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   39 VK-VYSTATGE-----CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGT-IRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             EE-EEecchHh-----hhhhcccccCccceeeecCCCccceEEEEEecCcc-EEEecCCCcEEEEEEecCC
Confidence            45 67766666     888999999999999887743   47779999999 9999999999988887543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.16  E-value=0.043  Score=36.40  Aligned_cols=43  Identities=19%  Similarity=0.085  Sum_probs=32.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~   63 (78)
                      ..+.+..+...+.+.+|||||+.|+..+.+   .. |.+||+.++..
T Consensus       190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~-l~~~~l~~g~~  235 (430)
T PRK00178        190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPR-IFVQNLDTGRR  235 (430)
T ss_pred             CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCE-EEEEECCCCCE
Confidence            445566677788999999999999876533   35 88889987754

>KOG0974|consensus

Probab=96.12  E-value=0.015  Score=42.43  Aligned_cols=58  Identities=21%  Similarity=0.161  Sum_probs=43.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +|++.+.+    ....+.-+|...+..+.|.|.  .++|+++|.+ .|+|+.+ +..+.++..|
T Consensus       199 iR-lW~i~s~~----~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~-~~~l~~y~~h  256 (967)
T KOG0974|consen  199 IR-LWPIDSRE----VLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVN-GTQLEVYDEH  256 (967)
T ss_pred             ee-eeeccccc----ccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecc-cceehhhhhh
Confidence            35 78888876    222345589999999999988  8999999999 9999654 4444455443

>KOG2315|consensus

Probab=96.11  E-value=0.012  Score=40.60  Aligned_cols=51  Identities=18%  Similarity=0.300  Sum_probs=35.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC------CCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS------KGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~------d~~~i~i~d~~~~~~~~~   66 (78)
                      +||+.+..     ++..+.....  .-..|+|||.+++|+..      |.. ++||+.. |+.+++
T Consensus       340 vwDv~n~K-----~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhyt-G~~l~~  396 (566)
T KOG2315|consen  340 VWDVPNRK-----LIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHYT-GSLLHE  396 (566)
T ss_pred             EEeccchh-----hccccccCCc--eEEEEcCCCcEEEEEeccccEEecCC-eEEEEec-Cceeeh
Confidence            78888754     7766654432  34689999999999854      566 8899864 555443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=96.03  E-value=0.054  Score=36.18  Aligned_cols=45  Identities=16%  Similarity=0.283  Sum_probs=29.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKGTLIRVWDT   58 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~   58 (78)
                      +||+..+.      ...+....+...+.+|+|||+.|+ +.+.++. ..+|.+
T Consensus       224 ~~dl~~g~------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~-~~Iy~~  269 (427)
T PRK02889        224 VHDLATGR------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGN-SQIYTV  269 (427)
T ss_pred             EEECCCCC------EEEeecCCCCccceEECCCCCEEEEEEccCCC-ceEEEE
Confidence            55765443      222333344556889999999887 5677887 777754

>KOG1832|consensus

Probab=96.01  E-value=0.016  Score=42.65  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +...+|+-|.....|++|+-+.++|+.|+..|. |+++++.+|........|..+++
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge-ik~~nv~sG~~e~s~ncH~SavT 1147 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE-IKIFNVSSGSMEESVNCHQSAVT 1147 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccce-EEEEEccCccccccccccccccc
Confidence            467788888889999999999999999999999 99999999987777776666554

>KOG4532|consensus

Probab=96.01  E-value=0.085  Score=34.07  Aligned_cols=63  Identities=13%  Similarity=0.087  Sum_probs=42.8

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC--EEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT--MIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~--~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      |+. |||+++-..-+.....+=+.|.+.+....|++.|.  +|.-...-+. +.+-|+++++..+.+
T Consensus       226 ~~~-I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  226 TCA-IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVI  290 (344)
T ss_pred             cEE-EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEE
Confidence            455 99999876333333333356899999999998653  5555555566 889999988644433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.00  E-value=0.073  Score=35.74  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEE
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLV   65 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~   65 (78)
                      ...+..+...+...+|||||+.|+..+.+   .. |.+||+.+++...
T Consensus       319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~  365 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQ  365 (428)
T ss_pred             eEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEE
Confidence            34444445566788999999998876543   35 8899998886543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.92  E-value=0.052  Score=34.63  Aligned_cols=30  Identities=7%  Similarity=0.213  Sum_probs=25.2

Q ss_pred             CEEEEEECCCCCEEEEEcC-CCCEEEEeeCCC
Q psy1940          30 ELACLALNQTGTMIATASS-KGTLIRVWDTLK   60 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~   60 (78)
                      ....++|+|||++++++.+ ++. |.+||+..
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~  206 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSS-VDVWQLKD  206 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCE-EEEEEEeC
Confidence            3567999999999988876 777 99999873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.87  E-value=0.075  Score=35.24  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=25.5

Q ss_pred             CccCEEEEEECCCCCEEE-EEcCCC--CEEEEeeCCCCcEE
Q psy1940          27 HQSELACLALNQTGTMIA-TASSKG--TLIRVWDTLKKVQL   64 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~-s~~~d~--~~i~i~d~~~~~~~   64 (78)
                      ..+.....+|+|||+.|+ +.+.++  . |.++|+.++...
T Consensus       241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~-Iy~~d~~~~~~~  280 (430)
T PRK00178        241 FEGLNGAPAWSPDGSKLAFVLSKDGNPE-IYVMDLASRQLS  280 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEEccCCCce-EEEEECCCCCeE
Confidence            334455789999999887 444454  4 777798877643

>KOG4547|consensus

Probab=95.79  E-value=0.022  Score=39.34  Aligned_cols=49  Identities=20%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-----CCEEEEEc-CCCCEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-----GTMIATAS-SKGTLIRVWDTL   59 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-----g~~l~s~~-~d~~~i~i~d~~   59 (78)
                      +. +||+.+.+     .+.+|.+|.++|++++|--+     |.++.++. .+.. +.+|-+.
T Consensus       166 ik-~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~  220 (541)
T KOG4547|consen  166 IK-VLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVE  220 (541)
T ss_pred             EE-EEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEE
Confidence            35 78888876     99999999999999999776     77776653 3333 6677544

>KOG0650|consensus

Probab=95.73  E-value=0.0045  Score=43.26  Aligned_cols=63  Identities=14%  Similarity=0.110  Sum_probs=49.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVELRRGSD   72 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~   72 (78)
                      |+. |||+....     .++.+......|.+++.+|.|..|+.++.|+. +-+||+.-+ +..+.++.|.+
T Consensus       588 ~vR-iYdL~kqe-----lvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~  651 (733)
T KOG0650|consen  588 SVR-IYDLSKQE-----LVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEK  651 (733)
T ss_pred             ceE-EEehhHHH-----HHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhh
Confidence            567 88887765     77777777778999999999999999999999 999998754 34455554443

>KOG4190|consensus

Probab=95.73  E-value=0.0051  Score=43.04  Aligned_cols=55  Identities=15%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-------cEEEEeeCCCCCeE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK-------VQLVELRRGSDPAT   75 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-------~~~~~~~~~~~~~~   75 (78)
                      ....|.+|+..|..++--.+.+.+++++.|++ +++|.+++.       .|..++..|.++++
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD~~~tsaCQfTY~aHkk~i~  788 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGDEIGTSACQFTYQAHKKPIH  788 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccCccccceeeeEhhhccCccc
Confidence            46678899999998866557778999999999 999988752       36678888887764

>KOG1517|consensus

Probab=95.60  E-value=0.054  Score=40.49  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=41.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccC--EEEEEECCCCC-EEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSE--LACLALNQTGT-MIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~--i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~   60 (78)
                      +||.+-..+.  ..+.+.+.|+..  |.-+.+.+.|- .|++|+.+|. |.+||++.
T Consensus      1235 vyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~ 1288 (1387)
T KOG1517|consen 1235 VYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRM 1288 (1387)
T ss_pred             EeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEeccc
Confidence            6787765422  367778889887  99999998764 5999999999 99999997

>KOG2055|consensus

Probab=95.60  E-value=0.03  Score=38.17  Aligned_cols=65  Identities=17%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCC-ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAH-QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h-~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      |+- .||+....-.   .+..+.++ +..+.....||++++|+.++..|. |.+.-..+++.+..++....
T Consensus       281 y~y-syDle~ak~~---k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-I~lLhakT~eli~s~KieG~  346 (514)
T KOG2055|consen  281 YLY-SYDLETAKVT---KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-IHLLHAKTKELITSFKIEGV  346 (514)
T ss_pred             EEE-Eeeccccccc---cccCCCCcccchhheeEecCCCCeEEEcccCce-EEeehhhhhhhhheeeeccE
Confidence            566 7999776522   22223344 445678888999999999999999 99999998888777665433

>KOG2315|consensus

Probab=95.57  E-value=0.09  Score=36.53  Aligned_cols=46  Identities=17%  Similarity=0.350  Sum_probs=37.3

Q ss_pred             EecCCccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEEeeC
Q psy1940          23 TINAHQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+.-..++=+++-|||.|+.++-++.+   |. +.|||+.+.+++..+..
T Consensus       306 v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a  354 (566)
T KOG2315|consen  306 VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKA  354 (566)
T ss_pred             eEeCCCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhcccccc
Confidence            344456777899999999999999877   57 99999999888777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.55  E-value=0.13  Score=33.64  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=26.6

Q ss_pred             ecCCccCEEEEEECCCCCEEEE-EcCCC--CEEEEeeCCCCcE
Q psy1940          24 INAHQSELACLALNQTGTMIAT-ASSKG--TLIRVWDTLKKVQ   63 (78)
Q Consensus        24 ~~~h~~~i~~v~fs~dg~~l~s-~~~d~--~~i~i~d~~~~~~   63 (78)
                      +..+.+.+.+.+|+|||+.|+. .+.++  . |.+||+.++..
T Consensus       229 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~-i~~~d~~~~~~  270 (417)
T TIGR02800       229 VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD-IYVMDLDGKQL  270 (417)
T ss_pred             eecCCCCccceEECCCCCEEEEEECCCCCcc-EEEEECCCCCE
Confidence            4445556677899999997764 44443  5 77788887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.55  E-value=0.28  Score=31.88  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=40.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeC--CCCcEEEEe--eCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT--LKKVQLVEL--RRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~--~~~~~~~~~--~~~~~~~~~~w   78 (78)
                      +|++.... +.-+.+..+.........++|+|+|++|+++..+...|.+|++  .+|.....-  .....|+.+.|
T Consensus       271 vf~~d~~~-g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  271 VFDLDPAT-GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEECTTT-TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEecCC-CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            66763221 1112334444444456899999999999988655433888854  567654333  24556666654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190|consensus

Probab=95.53  E-value=0.018  Score=40.42  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=46.4

Q ss_pred             eeeeEEEcccCCc--CCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           3 YLQCSQDLSSTEL--SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         3 ~~~~i~d~~~~~~--~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      .++ +|.++....  +.+.|..+++.|+.+|+++.|-.|-+++++  .|+. |.+||.--|+.+..+
T Consensus       758 TVK-LWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g-iHlWDPFigr~Laq~  820 (1034)
T KOG4190|consen  758 TVK-LWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG-IHLWDPFIGRLLAQM  820 (1034)
T ss_pred             eEE-EEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc-ceeecccccchhHhh
Confidence            356 888887642  333488889999999999999988887764  5677 999997766655433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.49  E-value=0.063  Score=36.87  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             CEEEEEECC----CCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQ----TGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~----dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ...+++.++    +.++|++.+.|+. +|+||+.++.++....
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID  257 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence            445566666    6789999999999 9999999999977654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2321|consensus

Probab=95.33  E-value=0.047  Score=38.27  Aligned_cols=47  Identities=19%  Similarity=0.416  Sum_probs=38.6

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +..|....++++++..++.-.+|++|+.+|. +..||.++...+..+.
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCce-EEEecchhhhhheeee
Confidence            4445556689999999999999999999999 9999999876655554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.07  E-value=0.13  Score=34.78  Aligned_cols=42  Identities=21%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCC-C--CEEEEeeCCCCcE
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSK-G--TLIRVWDTLKKVQ   63 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~--~~i~i~d~~~~~~   63 (78)
                      .+.+..+..++.+.+|||||+.|+..+.+ +  . |.++|+.+++.
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~-L~~~dl~tg~~  254 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAE-IFVQDIYTQVR  254 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcE-EEEEECCCCCe
Confidence            34444556678889999999988876432 2  4 77789887754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.02  E-value=0.21  Score=33.49  Aligned_cols=49  Identities=22%  Similarity=0.387  Sum_probs=38.4

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC--CCCeEEeC
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG--SDPATLYW   78 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~~~~w   78 (78)
                      +++..++.||+|+++|--..+|. +.+.+..-.+.+.++.-.  ..|..+.|
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~~~~~p~~~~W  267 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTDSKSPPKQMAW  267 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecCcCCCCcEEEE
Confidence            57999999999999999999998 888876555555555543  66777777

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4227|consensus

Probab=95.01  E-value=0.12  Score=35.10  Aligned_cols=62  Identities=11%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             EEEcccCC-cCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTE-LSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~-~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +|.+.+.- ....|.+.... .|...|.|++|+...+.+++|+.+++ |...|+.+.+.+..+..
T Consensus        82 ~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~qsi~V~~~  145 (609)
T KOG4227|consen   82 VWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETKQSIYVANE  145 (609)
T ss_pred             eechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccceeeeeecc
Confidence            56555432 22335565554 45689999999999999999999999 99999998887766643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.01  E-value=0.13  Score=33.89  Aligned_cols=49  Identities=14%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             CcEEecCCccCEEEEEECCCCC-EEEEE-cCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          20 SPVTINAHQSELACLALNQTGT-MIATA-SSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~-~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .+..+.. ..++.+|+.+.|.+ +|++. ..++. +.+||..+|+.++++++-
T Consensus       281 rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  281 RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEEEE---
T ss_pred             EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEeehhcc
Confidence            6666653 24688999999877 55444 55788 999999999999998753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=94.90  E-value=0.35  Score=32.51  Aligned_cols=55  Identities=5%  Similarity=0.032  Sum_probs=33.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC---CCCEEEEeeCCCCcEEEEee
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS---KGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~---d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +||+....      ...+......+....|+|||+.|+..+.   +.. +.++|+.+++......
T Consensus       355 v~dl~~g~------~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        355 VYDLATGR------DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI  412 (428)
T ss_pred             EEECCCCC------eEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec
Confidence            55665432      2334333345677899999998875432   234 7788988776544443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.85  E-value=0.28  Score=27.41  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             EEEEEECC---CC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940          31 LACLALNQ---TG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus        31 i~~v~fs~---dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      |+++++..   || +.|++|++|.. ||+|+-  ...+.++.....+..|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~--~e~~~Ei~e~~~v~~L   48 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKG--DEIVAEITETDKVTSL   48 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEeC--CcEEEEEecccceEEE
Confidence            34444433   44 58888999998 999863  3566666665555544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.74  E-value=0.17  Score=32.90  Aligned_cols=41  Identities=24%  Similarity=0.454  Sum_probs=31.8

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.+-+|+++++|..+++.+-.+..+.+||..+++.+....
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            46788999999998776555544339999999998876654

>KOG1517|consensus

Probab=94.63  E-value=0.16  Score=38.11  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=42.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~   73 (78)
                      +. |||.....     ..+-++ +...-+++++-+. .|+.+++|-.||+ +|+||.+..   ..+...+.|.+.
T Consensus      1189 IR-IWDa~~E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs-vRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1189 IR-IWDAHKEQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGS-VRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             EE-EEecccce-----eEeecccCCCccceeecccccCCceEEEeecCCc-eEEeecccCCccccceeecccCCc
Confidence            45 89987654     444444 3444566664433 4799999999999 999998854   345666666554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.60  E-value=0.28  Score=33.15  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=22.6

Q ss_pred             EEEEEECCCCCEEEE-EcCCCC-EEEEeeCCCCcE
Q psy1940          31 LACLALNQTGTMIAT-ASSKGT-LIRVWDTLKKVQ   63 (78)
Q Consensus        31 i~~v~fs~dg~~l~s-~~~d~~-~i~i~d~~~~~~   63 (78)
                      ....+|+|||+.|+. .+.++. -|.++|+.++..
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~  298 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL  298 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence            346899999998875 455664 055568877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.54  E-value=0.6  Score=32.52  Aligned_cols=43  Identities=12%  Similarity=0.133  Sum_probs=35.9

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .++.+...-+.|.+++.+|||++++.+-.... +.+.|+.+|..
T Consensus       393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididngnv  435 (668)
T COG4946         393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNGNV  435 (668)
T ss_pred             eEEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCCCe
Confidence            56667777788999999999999998877777 88889998865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=94.52  E-value=0.25  Score=34.52  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      -....++|.|+|..+++|++.|. +.+||+.-+
T Consensus       300 ~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  300 FIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             ccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence            34567999999999999999999 999998754

>KOG0882|consensus

Probab=94.26  E-value=0.026  Score=38.50  Aligned_cols=44  Identities=14%  Similarity=0.188  Sum_probs=37.9

Q ss_pred             cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ...++...++.|+|+|..+++-..|.. ||+++.++|+.++++..
T Consensus       198 ~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  198 PKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cccccCccceEEccccCcccccCcccE-EEEEEeccchhhhhhhc
Confidence            345666789999999999999999999 99999999988877753

>KOG2314|consensus

Probab=93.97  E-value=0.19  Score=35.32  Aligned_cols=48  Identities=8%  Similarity=0.066  Sum_probs=35.6

Q ss_pred             eEEEcccCCcCCCCCcEEecC--CccCEE-EEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940           6 CSQDLSSTELSSSSSPVTINA--HQSELA-CLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~--h~~~i~-~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ||||++++.     ..+.|..  ....++ -+.||.|++++|-...+ + |.||+..+
T Consensus       285 ~IWDI~tG~-----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s-isIyEtps  335 (698)
T KOG2314|consen  285 IIWDIATGL-----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S-ISIYETPS  335 (698)
T ss_pred             EEEEccccc-----hhcceeccCCCccccceEEeccCCceeEEeccc-e-EEEEecCc
Confidence            499999987     6666655  333444 46999999999987765 4 89998765

>KOG0309|consensus

Probab=93.90  E-value=0.18  Score=36.69  Aligned_cols=66  Identities=20%  Similarity=0.267  Sum_probs=45.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc-EEEEeeCCCCCe
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV-QLVELRRGSDPA   74 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~   74 (78)
                      |+. .||+++..    .....+..-...-..|+|+...-.+.+.+.... |++||.+.|. ++..+++|-..+
T Consensus       138 ~vh-~wd~rSp~----~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~-i~vwd~r~gs~pl~s~K~~vs~v  204 (1081)
T KOG0309|consen  138 YVH-AWDMRSPH----RPFYSTSSWRSAASQVKWNYKDPNVLASSHGND-IFVWDLRKGSTPLCSLKGHVSSV  204 (1081)
T ss_pred             cce-eeeccCCC----cceeeeecccccCceeeecccCcchhhhccCCc-eEEEeccCCCcceEEecccceee
Confidence            677 89998875    455555544455578999985545555677777 9999999764 667777655444

>KOG0309|consensus

Probab=93.75  E-value=0.037  Score=40.02  Aligned_cols=49  Identities=24%  Similarity=0.432  Sum_probs=42.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +||++.++    .....+.+|-..|+++.|+.. -+.+.+++.|++ ++.||...
T Consensus       184 vwd~r~gs----~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~k  233 (1081)
T KOG0309|consen  184 VWDLRKGS----TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSK  233 (1081)
T ss_pred             EEeccCCC----cceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccc
Confidence            89999887    588889999999999999873 467889999999 99999764

>KOG4497|consensus

Probab=93.71  E-value=0.3  Score=32.49  Aligned_cols=65  Identities=11%  Similarity=0.211  Sum_probs=44.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +||+++..      ++..-..+.+|....|.|....|+.+..... +..|-..-..++.....+=+...++|
T Consensus       346 ~Wdlq~l~------l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg~~~V~vP~~GF~i~~l~W  410 (447)
T KOG4497|consen  346 LWDLQNLK------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSGPRVVGVPKKGFNIQKLQW  410 (447)
T ss_pred             EEechhhh------hhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCCceEEecCCCCceeeeEEe
Confidence            78988764      3333345679999999999999998877766 77887654445444444434444666

>KOG1409|consensus

Probab=93.70  E-value=0.06  Score=35.68  Aligned_cols=39  Identities=15%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .+.+..-...|..+.+..+-..|+|++.|.. |.|||+++
T Consensus       357 LA~phei~tgItamhlqetlglLvTsG~~Rv-i~iwd~~~  395 (404)
T KOG1409|consen  357 LAIPHEIKTGITAMHLQETLGLLVTSGTDRV-IKIWDVRS  395 (404)
T ss_pred             cccccccccceeEEEhhhhccceeecCCceE-EEEEechh
Confidence            4444322446888999988889999999998 99999875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.58  E-value=0.53  Score=35.31  Aligned_cols=34  Identities=32%  Similarity=0.365  Sum_probs=29.1

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .....++++++|+.+++-+.++. |++||++++..
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence            35678999999998888888898 99999998764

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=93.56  E-value=0.3  Score=21.46  Aligned_cols=22  Identities=18%  Similarity=0.142  Sum_probs=14.9

Q ss_pred             CccCEEEEEECCCCCEEEEEcC
Q psy1940          27 HQSELACLALNQTGTMIATASS   48 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~   48 (78)
                      ....-...+|||||+.|+-++.
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~   28 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSN   28 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEE
T ss_pred             CCccccCEEEecCCCEEEEEec
Confidence            3445577899999998875543

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1240|consensus

Probab=93.31  E-value=0.26  Score=37.47  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=43.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .||++.....   -....+...+.|++++.+|-++.++.|...|. +.+||++=+..+...+
T Consensus      1177 ~~D~r~~~~~---w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1177 SWDTRMRHDA---WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             EecchhhhhH---HhhhcCccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeeccc
Confidence            5777765411   11222344578999999999999999999999 9999999777766554

>KOG1354|consensus

Probab=92.89  E-value=0.34  Score=32.34  Aligned_cols=30  Identities=13%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEee
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWD   57 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d   57 (78)
                      ..+-|.+|.|+.+|.+||||..+|. |.+|.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGR-Vv~f~   53 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGR-VVLFE   53 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCe-EEEee
Confidence            4567889999999999999999999 88884

>KOG3621|consensus

Probab=92.86  E-value=0.33  Score=34.80  Aligned_cols=34  Identities=15%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .|+..|+++.|+++|..+++|...|. |..-.+.+
T Consensus       122 ~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s  155 (726)
T KOG3621|consen  122 SHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDS  155 (726)
T ss_pred             cCCceEEEEEecccccEEeecCCCce-EEEEEech
Confidence            47889999999999999999999998 77766555

>KOG1916|consensus

Probab=92.77  E-value=0.1  Score=38.67  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=33.5

Q ss_pred             EECCCCCEEEEEcCCCCEEEEeeCC-----CCcEEEEeeCCCCCeEEeC
Q psy1940          35 ALNQTGTMIATASSKGTLIRVWDTL-----KKVQLVELRRGSDPATLYW   78 (78)
Q Consensus        35 ~fs~dg~~l~s~~~d~~~i~i~d~~-----~~~~~~~~~~~~~~~~~~w   78 (78)
                      ..||||+.++++..||. ++.|.+.     .-+|++..+.|.+.-.+||
T Consensus       242 ~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkphd~~p~vC~  289 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPHDKHPRVCW  289 (1283)
T ss_pred             eeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCCCCCCceee
Confidence            47999999999999998 8877543     3457777777776667776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.74  E-value=1.1  Score=29.21  Aligned_cols=49  Identities=14%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EE----EEeeCCCCCeEE
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QL----VELRRGSDPATL   76 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~----~~~~~~~~~~~~   76 (78)
                      .....++.|+|||+++++.......|.+|++....  ..    ..++.+..|..+
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            34578999999999988875544339999887654  21    234455555544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=92.69  E-value=0.97  Score=28.56  Aligned_cols=54  Identities=17%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             EEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCcEEEEee--CCCCCeEEe
Q psy1940          22 VTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKVQLVELR--RGSDPATLY   77 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~~~~~~~--~~~~~~~~~   77 (78)
                      +.+.+-...++.++|+|+.+ .+++..+.+. |...|. +|+.++.++  +..+++.+.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~-~G~vlr~i~l~g~~D~EgI~   71 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSL-DGKVLRRIPLDGFGDYEGIT   71 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEET-T--EEEEEE-SS-SSEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcC-CCCEEEEEeCCCCCCceeEE
Confidence            34556666799999999755 5555666666 777786 588887775  345555543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1334|consensus

Probab=92.68  E-value=0.074  Score=36.60  Aligned_cols=54  Identities=11%  Similarity=0.212  Sum_probs=40.6

Q ss_pred             EEecCCcc--CEEEEEE-CCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940          22 VTINAHQS--ELACLAL-NQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus        22 ~~~~~h~~--~i~~v~f-s~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +.+.+|.+  .|..+-| -|...++++|+.=|. |.|||-.+++.++.+++....+++
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGh-IFiW~K~t~eii~~MegDr~VVNC  441 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGH-IFIWDKKTGEIIRFMEGDRHVVNC  441 (559)
T ss_pred             hhhcccccccccceeeeccCccceEEecCccce-EEEEecchhHHHHHhhcccceEec
Confidence            33778855  4667765 678889999998899 999999988877777665444443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.64  E-value=0.35  Score=31.93  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             EEEEECCCCCEEEEE----cCC-CCEEEEeeCCCCcEEEE
Q psy1940          32 ACLALNQTGTMIATA----SSK-GTLIRVWDTLKKVQLVE   66 (78)
Q Consensus        32 ~~v~fs~dg~~l~s~----~~d-~~~i~i~d~~~~~~~~~   66 (78)
                      ...++||||+++|-+    +.| .. ++++|+.+|+.+..
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~-l~v~Dl~tg~~l~d  165 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYT-LRVFDLETGKFLPD  165 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEE-EEEEETTTTEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEE-EEEEECCCCcCcCC
Confidence            367899999988855    222 35 99999999977643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.53  E-value=1.3  Score=31.69  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=30.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCc
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKV   62 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~   62 (78)
                      ....+... .....+.+||||+++++++. +.+ +.|.|+.+.+
T Consensus       313 v~~yIPVG-KsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k  354 (635)
T PRK02888        313 LTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLD  354 (635)
T ss_pred             eEEEEECC-CCccceEECCCCCEEEEeCCCCCc-EEEEEChhhh
Confidence            45555433 34478999999998887655 667 9999998754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=92.51  E-value=0.21  Score=33.01  Aligned_cols=41  Identities=15%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCC
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVELRRG   70 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~   70 (78)
                      ...|+.+.|++.|+++++-+.- + +.|||++.. .++.+++.|
T Consensus       280 vsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         280 VSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechH
Confidence            4567889999999999876544 4 999999865 577777654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=92.47  E-value=0.79  Score=34.05  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee------CCCCCeEEeC
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR------RGSDPATLYW   78 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~------~~~~~~~~~w   78 (78)
                      -...|.+++||||+..|+....++. +.+.+ ++-..+.+.+      +..+++++=|
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~-l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGW  174 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGN-LLLMT-RDFDPISEVPLDSDDFGESKHVSVGW  174 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCE-EEEEe-ccceEEEEeecCccccCCCceeeecc
Confidence            4668999999999999999999988 77764 4455555544      3345666655

>KOG1354|consensus

Probab=92.42  E-value=0.25  Score=32.94  Aligned_cols=41  Identities=15%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcEEEEeeCC
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQLVELRRG   70 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~~~~~~~~   70 (78)
                      -..|+.+.|++.|+++++-+-- + +++||++ ..+++.+++-|
T Consensus       272 IsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  272 ISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             hhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeeh
Confidence            3457789999999999875543 5 9999985 45666666654

>KOG3617|consensus

Probab=92.37  E-value=0.41  Score=35.59  Aligned_cols=39  Identities=21%  Similarity=0.463  Sum_probs=32.9

Q ss_pred             CcEEe-cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          20 SPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        20 ~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ..++. ..|..+|..+.||++|+.|+|+..-|. +..|...
T Consensus        92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD  131 (1416)
T ss_pred             eeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence            33444 479999999999999999999999998 9999644

>KOG1275|consensus

Probab=92.29  E-value=0.15  Score=37.61  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             CCCcEEecCCccCEEEEEECCCCCEEEEEcC---------CCCEEEEeeCCCCcEEEEee
Q psy1940          18 SSSPVTINAHQSELACLALNQTGTMIATASS---------KGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        18 ~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~---------d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.+++|.+|++.|+.+  +-.|+.|+|++.         |.. ++|||++.-+.+.-+.
T Consensus       207 ~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  207 FETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             Cceeeeeeccccceeee--eccCCeEEEeecccccccccccch-hhhhhhhhhhccCCcc
Confidence            35899999999998754  567899999864         456 8999998765544433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.28  E-value=0.64  Score=31.54  Aligned_cols=47  Identities=15%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940          24 INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        24 ~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      |.-..-.+.+|..+|.+++.|+.+.-|. |.++|+.++..++-.++..
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR  349 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR  349 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc
Confidence            3334445789999999999988888899 9999999998887777653

>KOG2314|consensus

Probab=92.23  E-value=0.35  Score=34.11  Aligned_cols=39  Identities=10%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             CEEEEEECCCCCEEEEEc-----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940          30 ELACLALNQTGTMIATAS-----------SKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~-----------~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+.-+.|||..++|+|=+           +... +.|||+++|...+.++.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~-l~IWDI~tG~lkrsF~~  300 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ-LIIWDIATGLLKRSFPV  300 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCce-EEEEEccccchhcceec
Confidence            456789999999999853           2245 99999999988777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.08  E-value=2.1  Score=28.91  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             CccCEEEEEECCCCCEEEE-EcCC--CCEEEEeeCCCCcE
Q psy1940          27 HQSELACLALNQTGTMIAT-ASSK--GTLIRVWDTLKKVQ   63 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s-~~~d--~~~i~i~d~~~~~~   63 (78)
                      ..+......|||||+.++. .+.+  .. |.++|+.++..
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~-Iy~~dl~~g~~  269 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPD-IYLYDTNTKTL  269 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcE-EEEEECCCCcE
Confidence            4445566789999987764 3334  34 66678877754

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=91.91  E-value=0.91  Score=30.52  Aligned_cols=58  Identities=17%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             EEEcccCCcCCCC----CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSS----SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~----~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      +-|+.+..+..-+    ....+...+++|.+++.| |-.++|.|.++|+ +.|.|+|.-..++.
T Consensus        61 l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~-l~viD~RGPavI~~  122 (395)
T PF08596_consen   61 LTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGS-LVVIDLRGPAVIYN  122 (395)
T ss_dssp             EEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSE-EEEEETTTTEEEEE
T ss_pred             eEEehhhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCc-EEEEECCCCeEEee
Confidence            5566665422111    233345668999999998 5559999999999 99999986666655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.72  E-value=1.1  Score=23.78  Aligned_cols=31  Identities=23%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ..-+.|.++|++++|..++.-+..|.+|...
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            3447899999999888776554338888654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG2066|consensus

Probab=91.60  E-value=0.91  Score=33.17  Aligned_cols=45  Identities=22%  Similarity=0.440  Sum_probs=36.3

Q ss_pred             EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940          23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      .+..-.++|.++.|.  |+++|=+..+|  |++||+.+++.+..++..+
T Consensus       155 ~l~~~eG~I~~i~W~--g~lIAWand~G--v~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWR--GNLIAWANDDG--VKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             eeecCccceEEEEec--CcEEEEecCCC--cEEEeccccceeeccCCCC
Confidence            455568899999997  78899888887  7999999998887776443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=91.32  E-value=1.4  Score=30.72  Aligned_cols=41  Identities=10%  Similarity=0.075  Sum_probs=31.3

Q ss_pred             CCccCEEEEEECCCCCEEEEEc--CCCCEEEEeeCCCCcEEEEee
Q psy1940          26 AHQSELACLALNQTGTMIATAS--SKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~--~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .-.++|...+|+|+++.+++.+  .+.. +.++|++.. ....++
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~-~s~~~lr~N-l~~~~P  314 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPAS-VSVFDLRGN-LRFYFP  314 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccc-eeecccccc-eEEecC
Confidence            4478999999999999888765  6666 899998855 444444

>KOG4532|consensus

Probab=91.20  E-value=0.44  Score=30.93  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=27.0

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      .=-+.+||.....+|++..||+ +-|||++.-
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~  235 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGT-CAIYDVRNM  235 (344)
T ss_pred             CceeeeeccCcceEEEEecCCc-EEEEEeccc
Confidence            3357889998999999999999 999999864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.72  E-value=1.4  Score=30.19  Aligned_cols=46  Identities=11%  Similarity=0.149  Sum_probs=27.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +. +||..+..     .++.+...  +|..|.||++|++++-.+.+.  +.|.+..
T Consensus       128 i~-~yDw~~~~-----~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~~~  173 (443)
T PF04053_consen  128 IC-FYDWETGK-----LIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILKYN  173 (443)
T ss_dssp             EE-EE-TTT-------EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEEE-
T ss_pred             EE-EEEhhHcc-----eeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEEec
Confidence            44 88887765     77777643  488999999999999988775  5665533

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00564 PQQ beta-propeller repeat

Probab=90.65  E-value=0.71  Score=19.27  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940          42 MIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus        42 ~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      .++.++.++. +..+|.++|+.+-++
T Consensus         8 ~v~~~~~~g~-l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGT-LYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence            5777888898 999999998876553

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.54  E-value=0.54  Score=29.00  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             EEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940          34 LALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        34 v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      +.+...+++|.+...+|. +.+||+.+++.+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~   46 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGL-LYVWNLKKGKAVL   46 (219)
T ss_pred             EEEEeCCCEEEEEeCCCe-EEEEECCCCeecc
Confidence            335667899999999999 9999999887653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1064|consensus

Probab=90.50  E-value=0.082  Score=41.56  Aligned_cols=49  Identities=27%  Similarity=0.388  Sum_probs=38.0

Q ss_pred             eEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           6 CSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         6 ~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      |+||+++..     ..++++.         +. ...++++++..|. ++||++..-..++.++..
T Consensus      2361 ~l~D~rqrq-----l~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2361 CLFDIRQRQ-----LRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             EEeehHHHH-----HHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCchh
Confidence            489998876     6666654         34 5578999999999 999999877777777653

>KOG2041|consensus

Probab=89.68  E-value=0.26  Score=35.92  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=36.2

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      -.+++.||...|.-+.|+..-..|-|+..+|. |.+|=+-.|
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmlykg  103 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLYKG  103 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCce-EEEEeeecc
Confidence            45678899999999999999999999999998 999977655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.60  E-value=1.4  Score=28.83  Aligned_cols=51  Identities=18%  Similarity=0.129  Sum_probs=37.0

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee--CCCCCeEEe
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR--RGSDPATLY   77 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~--~~~~~~~~~   77 (78)
                      +-...++++.|+|+.+.|.+...... -.++=...|..+..++  +-++++.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~GdlirtiPL~g~~DpE~Ie  135 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEGDLIRTIPLTGFSDPETIE  135 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCc-eEEEEecCCceEEEecccccCChhHeE
Confidence            33445899999999998888887776 6666556788888876  445665543

>KOG2066|consensus

Probab=89.59  E-value=2.3  Score=31.27  Aligned_cols=40  Identities=13%  Similarity=0.271  Sum_probs=27.9

Q ss_pred             EecCCccCEEEEEECC-------------CCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          23 TINAHQSELACLALNQ-------------TGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~-------------dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .|..|.+.|+-..+.-             +|.+++||+.||. |.|..+-+...
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGk-v~I~sl~~~~~  105 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGK-VVIGSLFTDDE  105 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCc-EEEeeccCCcc
Confidence            3455666665544433             4999999999999 88877665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=89.32  E-value=3.9  Score=28.74  Aligned_cols=51  Identities=16%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             EEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCCCEEEEEcCCC----CEEEEeeCCCCcEE
Q psy1940           7 SQDLSSTELSSSSSPVTI-NAHQSELACLALNQTGTMIATASSKG----TLIRVWDTLKKVQL   64 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~----~~i~i~d~~~~~~~   64 (78)
                      ++|+.++      .++.+ +...+.|..+.|+|+++++|-+=.+|    . |+++|+..++..
T Consensus       427 vididng------nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~-Iklydm~~~Kiy  482 (668)
T COG4946         427 VIDIDNG------NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS-IKLYDMDGGKIY  482 (668)
T ss_pred             EEEecCC------CeeEecccccceeEEEEEcCCceeEEEecCcceeeee-EEEEecCCCeEE
Confidence            4566554      34444 35677899999999999999775554    5 999999877654

>KOG4499|consensus

Probab=89.05  E-value=4.4  Score=26.08  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=32.8

Q ss_pred             EEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          33 CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        33 ~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .++..-+|+..++.-..++ |.-.|..+|+.+.++.-....++
T Consensus       216 Gm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             cceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcCCCceE
Confidence            3455668888888877888 88899999999988876655555

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=88.72  E-value=3.9  Score=25.03  Aligned_cols=46  Identities=22%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC-CCCeEEe
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG-SDPATLY   77 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~~~~   77 (78)
                      ..-.+++..+|+..++.-..+. |.++|.+ |+.+..++-. ..+.+++
T Consensus       185 ~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPVPRPTNCA  231 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCCCCEEEEE
Confidence            4678999999998887777787 9999987 8888877754 4555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=88.15  E-value=1.2  Score=18.37  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=16.5

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEe
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVW   56 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~   56 (78)
                      ...++.+++|+.+++=+..+. |.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~r-V~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHR-VQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTE-EEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCE-EEEC
Confidence            356788888877666655555 6553

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=87.95  E-value=2.3  Score=31.29  Aligned_cols=30  Identities=37%  Similarity=0.759  Sum_probs=25.1

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeC
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDT   58 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~   58 (78)
                      ......|++=+.+| +||.|+.+|. ||+||-
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~  605 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGD-IRLYDR  605 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCc-EEeecc
Confidence            45567888888777 6999999999 999993

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=86.92  E-value=1.3  Score=30.91  Aligned_cols=45  Identities=20%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+....-++..+.|||.|++|++....+  |.+|+-.+...+..+++
T Consensus        27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~~~l~~~~~   71 (561)
T COG5354          27 RFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSKAKLVRFRH   71 (561)
T ss_pred             cccccCcchhheeecCcchheehhhccc--eEEccccchhheeeeec
Confidence            3444556788899999999999877666  89998777655555543

>KOG1272|consensus

Probab=86.76  E-value=0.31  Score=33.57  Aligned_cols=66  Identities=23%  Similarity=0.374  Sum_probs=52.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ||. -.|+..+.     .+..++...+.+..+.=+|-.-.+-+|...|+ |.+|...+.+.+.++--|..+++
T Consensus       232 ~L~-Y~DVS~Gk-----lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~skePLvKiLcH~g~V~  297 (545)
T KOG1272|consen  232 FLK-YQDVSTGK-----LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSKEPLVKILCHRGPVS  297 (545)
T ss_pred             ceE-EEeechhh-----hhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCcchHHHHHhcCCCcc
Confidence            344 44776665     77788888888888888998888889999999 99999998888777766666654

>KOG1912|consensus

Probab=86.41  E-value=0.56  Score=34.43  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      |+ +-|++++-   ++..+.++ ....+|..|.-|..|.+|+..=.|.. +.+||+++..+++.+.
T Consensus       500 l~-vtdLrtGl---sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~p-lEiwd~kt~~~lr~mS  560 (1062)
T KOG1912|consen  500 LV-VTDLRTGL---SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREP-LEIWDLKTLRMLRLMS  560 (1062)
T ss_pred             EE-EEEccccc---ccccccCCCCCcCcceeeeecccCceEEEEecccc-hHHHhhccchHHHHHh
Confidence            45 66777653   12333333 34678999999999999999999999 9999998766554443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.25  E-value=2.7  Score=27.44  Aligned_cols=50  Identities=12%  Similarity=0.126  Sum_probs=33.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      ++|+.+.      ....+......+....|||+|+.++-.. ++. +-+.+..++...
T Consensus        27 i~d~~~~------~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n-ly~~~~~~~~~~   76 (353)
T PF00930_consen   27 IYDIETG------EITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN-LYLRDLATGQET   76 (353)
T ss_dssp             EEETTTT------EEEESS-EETTBSEEEE-SSSTEEEEEE-TTE-EEEESSTTSEEE
T ss_pred             EEecCCC------ceEECcCCccccccceeecCCCeeEEEe-cCc-eEEEECCCCCeE
Confidence            5566553      3333333356778899999999999876 456 888888777443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2377|consensus

Probab=86.06  E-value=3.8  Score=28.78  Aligned_cols=33  Identities=9%  Similarity=0.277  Sum_probs=29.1

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ...++|.+|.||+|.+.||.-..+++ |.+++..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~   96 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFI   96 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCce-EEEEecC
Confidence            45679999999999999999999998 9988763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.83  E-value=4.1  Score=26.55  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=25.2

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEeeCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVWDTL   59 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~d~~   59 (78)
                      ..+.+..+-..-|.++|||||+.|+.+... +. |.-++..
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~-i~r~~~d  193 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR-IHRYDLD  193 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCe-EEEEecC
Confidence            334344444444789999999888887665 44 6666554

>PF01011 PQQ: PQQ enzyme repeat family

Probab=85.74  E-value=2.1  Score=18.78  Aligned_cols=28  Identities=14%  Similarity=0.224  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          42 MIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        42 ~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .+..++.++. +.-.|.++|+.+-.++..
T Consensus         2 ~v~~~~~~g~-l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGY-LYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSE-EEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCE-EEEEECCCCCEEEeeeCC
Confidence            3556689998 999999999999877643

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=85.69  E-value=3.5  Score=24.70  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++..+++++.++. +..+|+.+|+.+..+..
T Consensus        35 ~~~~v~~~~~~~~-l~~~d~~tG~~~W~~~~   64 (238)
T PF13360_consen   35 DGGRVYVASGDGN-LYALDAKTGKVLWRFDL   64 (238)
T ss_dssp             ETTEEEEEETTSE-EEEEETTTSEEEEEEEC
T ss_pred             eCCEEEEEcCCCE-EEEEECCCCCEEEEeec
Confidence            5667777788888 99999999998876664

...

>KOG0882|consensus

Probab=85.59  E-value=0.18  Score=34.62  Aligned_cols=42  Identities=17%  Similarity=0.221  Sum_probs=35.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCc
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKV   62 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~   62 (78)
                      -+..++.|-+.|.+++-+.||..+.|.+. |+. ++++|+.+-.
T Consensus        45 fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs-~KvfDvEn~D   87 (558)
T KOG0882|consen   45 FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS-VKVFDVENFD   87 (558)
T ss_pred             ehhhhHHHHHHHHhhhccccceeEeeccCcccc-eeEEEeeccc
Confidence            45667889999999999999999999777 998 9999887643

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=85.58  E-value=3.9  Score=26.45  Aligned_cols=39  Identities=13%  Similarity=0.157  Sum_probs=33.8

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      |++|...++|.+|+|+..-.. |.+.|.++|+.+-.+.+.
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~  184 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGK  184 (299)
T ss_pred             eeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCC
Confidence            789999999999999988888 999999999988777543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=84.88  E-value=3.3  Score=25.34  Aligned_cols=31  Identities=19%  Similarity=0.166  Sum_probs=23.7

Q ss_pred             ccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCC
Q psy1940          28 QSELACLALNQTGTMIA-TASSKGTLIRVWDTL   59 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~   59 (78)
                      -...+.|+|+|||+.|+ +-+..+. |..+|+.
T Consensus       133 ~~~pNGi~~s~dg~~lyv~ds~~~~-i~~~~~~  164 (246)
T PF08450_consen  133 LGFPNGIAFSPDGKTLYVADSFNGR-IWRFDLD  164 (246)
T ss_dssp             ESSEEEEEEETTSSEEEEEETTTTE-EEEEEEE
T ss_pred             cccccceEECCcchheeecccccce-eEEEecc
Confidence            34568999999999776 5566676 8888875

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=83.33  E-value=2.9  Score=18.39  Aligned_cols=20  Identities=15%  Similarity=0.323  Sum_probs=15.1

Q ss_pred             CCEEEEEcCCCCEEEEeeCCC
Q psy1940          40 GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        40 g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      +..++.++.|+. +..+|+++
T Consensus        21 ~g~vyv~~~dg~-l~ald~~t   40 (40)
T PF13570_consen   21 GGRVYVGTGDGN-LYALDAAT   40 (40)
T ss_dssp             TSEEEEE-TTSE-EEEEETT-
T ss_pred             CCEEEEEcCCCE-EEEEeCCC
Confidence            457888899999 99998764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=83.33  E-value=4.5  Score=30.67  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=27.6

Q ss_pred             EEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940          32 ACLALNQTGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus        32 ~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      ..++++++|+.+++-+.++. |++||..++...
T Consensus       807 ~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~  838 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHK-IKKLDPATKRVT  838 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCE-EEEEECCCCeEE
Confidence            58999999998888888888 999999877654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.19  E-value=8.9  Score=25.40  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             EECCCCCEEEEEcCC-----CCEEEEeeCCCC-cEEEEeeC
Q psy1940          35 ALNQTGTMIATASSK-----GTLIRVWDTLKK-VQLVELRR   69 (78)
Q Consensus        35 ~fs~dg~~l~s~~~d-----~~~i~i~d~~~~-~~~~~~~~   69 (78)
                      .|||||.+|++...|     |. |-|||.+.+ ..+.+++.
T Consensus       120 vfs~dG~~LYATEndfd~~rGV-iGvYd~r~~fqrvgE~~t  159 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGV-IGVYDAREGFQRVGEFST  159 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCce-EEEEecccccceeccccc
Confidence            699999999986444     56 999998865 34455554

>KOG2109|consensus

Probab=82.27  E-value=1.5  Score=31.71  Aligned_cols=37  Identities=27%  Similarity=0.510  Sum_probs=31.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEe
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVW   56 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~   56 (78)
                      ....|++|+.+|..+.|.+.|..+++++-.|..|.++
T Consensus       307 ~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvf  343 (788)
T KOG2109|consen  307 DIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVF  343 (788)
T ss_pred             hhhheeeecCcccccccccCceEEEEEeeccceeeeE
Confidence            6777899999999999999999999999888534444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=81.61  E-value=5.4  Score=25.99  Aligned_cols=32  Identities=9%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      .+..+++++.+|. +.++|..+|+.+..++.+.
T Consensus       319 ~g~~l~~~~~~G~-l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       319 VGGYLVVGDFEGY-LHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             ECCEEEEEeCCCE-EEEEECCCCCEEEEEEcCC
Confidence            4668899999999 9999999999998887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=80.99  E-value=5.4  Score=23.85  Aligned_cols=28  Identities=18%  Similarity=0.163  Sum_probs=20.7

Q ss_pred             CCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940          37 NQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        37 s~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      ..++..|+.++.++. +..+|+++|+.+-
T Consensus       209 ~~~~~~l~~~~~~~~-l~~~d~~tG~~~W  236 (238)
T PF13360_consen  209 SVDGGTLYVTSSDGR-LYALDLKTGKVVW  236 (238)
T ss_dssp             ECCCTEEEEEETTTE-EEEEETTTTEEEE
T ss_pred             eeeCCEEEEEeCCCE-EEEEECCCCCEEe
Confidence            456667777777888 8888888887654

...

>KOG2114|consensus

Probab=80.83  E-value=7.2  Score=29.11  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=37.5

Q ss_pred             eeeeEEEcccCCcCC-CCCc---EEec----CCccCEEEEEECCCCCEEEEEcCCCCEEEEe
Q psy1940           3 YLQCSQDLSSTELSS-SSSP---VTIN----AHQSELACLALNQTGTMIATASSKGTLIRVW   56 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~-~~~~---~~~~----~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~   56 (78)
                      +++ +||+....+.. ..+.   +.+.    ....|+++++.+.+-+.+|.|-.+|. |..+
T Consensus        93 llk-iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~-V~~~  152 (933)
T KOG2114|consen   93 LLK-IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL-VICY  152 (933)
T ss_pred             EEE-EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE-EEEE
Confidence            688 99998876443 3344   2221    23456889999999999999988998 7776

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.67  E-value=6.6  Score=28.64  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             CCccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCCC
Q psy1940          26 AHQSELACLALNQT---GTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        26 ~h~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      .+...|..+.|.|.   +.+|+.=..|++ +|+||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~-lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNT-LRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCE-EEEEecCCC
Confidence            34567889999996   589999999999 999998754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1275|consensus

Probab=80.09  E-value=7.4  Score=29.41  Aligned_cols=39  Identities=15%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .+.+..-++.|.+..+|+.|..++.+..+|. |.+|--++
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~~~  343 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWADRP  343 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCc-EeeecCCC
Confidence            3444444556899999999999999999999 99996443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		5e-06
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		2e-05

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 22  VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
           V + AH + +  + LN+ G M+AT S  GTLIRV+ T   V + E RRG D  ++
Sbjct: 173 VLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSI 227

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 22  VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74
           V I AH + +  + LN+   M+AT S  GT+IRV+ T   V + E RRG D A
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	3e-20
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	9e-04
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	8e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	8e-04

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 80.8 bits (199), Expect = 3e-20
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 7   SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE 66
           +QD    + +     V I AH + +  + LN+   M+AT S  GT+IRV+ T   V + E
Sbjct: 174 TQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233

Query: 67  LRRGSDPATLY 77
            RRG D A + 
Sbjct: 234 FRRGLDRADVV 244

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 35.0 bits (80), Expect = 9e-04
 Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 12 STELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
             + + +  V  N   + +     NQ  + +  ++ K     +++ 
Sbjct: 3  LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS--FEIYNV 47

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 16  SSSSSPVTINAHQSELACLALN-QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP- 73
           ++S    T++AH +E+ CL+ N  +  ++AT S+  T + +WD         LR      
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWD---------LRNLKLKL 314

Query: 74  ATLYW 78
            +   
Sbjct: 315 HSFES 319

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 23  TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA 74
           T+ AH   ++ +  N+ G++I ++S  G   R+WDT     L  L    +P 
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDDDNPP 194

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 23   TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL 76
             +  H   + C A +  G ++AT    G  IR+W+      L      S     
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGT 1174

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 23  TINAHQSELACLALNQTGTMIATASSKGTLIRVWDT 58
           T+NAH+  +  L  ++T   + T S   T ++VW+ 
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWEC 409

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 11  SSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
           +S  L   +         S+   L     G  +      G  I V +   K Q ++L   
Sbjct: 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSK 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.53
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.51
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.49
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.47
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.47
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.46
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.45
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.44
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.43
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.43
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.43
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.43
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.42
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.42
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.42
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.41
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.4
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.4
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.39
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.39
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.39
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.39
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.38
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.38
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.37
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.37
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.36
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.36
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.35
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.35
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.34
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.34
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.34
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.33
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.32
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.32
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.31
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.31
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.31
2pm7_B	297	Protein transport protein SEC13, protein transport	99.3
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.3
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.3
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.3
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.29
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.29
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.28
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.28
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.28
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.28
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.27
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.27
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.27
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.26
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.26
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.26
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.26
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.26
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.25
2pm7_B	297	Protein transport protein SEC13, protein transport	99.25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.25
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.23
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.23
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.23
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.22
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.22
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.21
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.2
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.2
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.18
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.18
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.17
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.17
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.17
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.17
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.17
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.14
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.14
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.14
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.13
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.13
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.11
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.1
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.1
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.08
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.08
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.08
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.07
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.07
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.07
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.06
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.04
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.02
3jro_A	753	Fusion protein of protein transport protein SEC13	99.01
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.01
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.01
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.01
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.99
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.94
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.89
3jro_A	753	Fusion protein of protein transport protein SEC13	98.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.8
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.49
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.45
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.41
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.39
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.3
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.24
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.23
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.2
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.2
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.14
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.13
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.11
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.09
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.08
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.08
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.07
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.02
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.73
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.67
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.62
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.51
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.38
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.37
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.35
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.32
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.27
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.25
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.24
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.21
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.13
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.12
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.11
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.08
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.08
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.06
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.84
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.6
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.36
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.9
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.79
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.73
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.4
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.16
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.13
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.01
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.9
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	93.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	93.88
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.68
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	93.4
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	92.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	92.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.32
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	91.94
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	91.87
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	91.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	91.31
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	91.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	91.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	90.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	90.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	89.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	89.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	88.68
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	88.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	87.94
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	86.92
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	86.41
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	86.03
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	83.39
2p4o_A	306	Hypothetical protein; putative lactonase, structur	83.35
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	81.75
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	80.68

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.53  E-value=1.3e-13  Score=86.94  Aligned_cols=65  Identities=22%  Similarity=0.343  Sum_probs=57.0

Q ss_pred             eeeEEEcccCCcCCCCCcE----EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPV----TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~----~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ...    .+.+|.+.|++++|+|+|++|++++.|++ |++||+++++++..+.+|...+.
T Consensus       105 v~-lWd~~~~~-----~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~-i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          105 VE-LWELDENE-----TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC-IKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EE-EEEECTTS-----SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEeccCCC-----ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCcCCceE
Confidence            56 89998765     333    34489999999999999999999999999 99999999999999999988775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.51  E-value=2.1e-13  Score=84.98  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+++..     ...++.+|...|.+++|+|+|++|++++.|++ |++||++++.++..+.+|..++. +.|
T Consensus       230 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~h~~~v~~v~~  298 (321)
T 3ow8_A          230 IK-IYDVQHAN-----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFDHQDQVWGVKY  298 (321)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EE-EEECCCcc-----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcCCCCcEEEEEE
Confidence            56 89998765     78889999999999999999999999999999 99999999999999998887765 443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.49  E-value=2.9e-13  Score=85.42  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ +||+++..     +++++.+|.+.|++++|+|+| ++|++++.|++ |++||+++++++ .+.+|.+.++ +.|
T Consensus       239 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~H~~~V~~v~~  307 (344)
T 4gqb_B          239 VS-LVDTKSTS-----CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQAHRDFVRDATW  307 (344)
T ss_dssp             EE-EEESCC-------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECCCSSCEEEEEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcCCCCCEEEEEE
Confidence            56 89998776     899999999999999999998 57999999999 999999988764 5677877766 544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.47  E-value=1.2e-13  Score=87.41  Aligned_cols=51  Identities=16%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      ++ |||+.+..     +++++ .+|.++|++++|||||++|+|++.|++ |||||+...
T Consensus       293 V~-iwd~~~~~-----~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~~  344 (365)
T 4h5i_A          293 IA-LVKLKDLS-----MSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPLN  344 (365)
T ss_dssp             EE-EEETTTTE-----EEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCTT
T ss_pred             EE-EEECCCCc-----EEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC
Confidence            56 99998775     77775 799999999999999999999999999 999998643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.47  E-value=2.6e-13  Score=84.15  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=59.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+............++.+|..+|.+++|+|+|++|++++.|++ |++||+++++.+..+.+|..++.
T Consensus        42 v~-~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~-v~~wd~~~~~~~~~~~~h~~~v~  111 (319)
T 3frx_A           42 LI-SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT-LRLWDVATGETYQRFVGHKSDVM  111 (319)
T ss_dssp             EE-EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEE
T ss_pred             EE-EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCeeEEEccCCCcEE
Confidence            45 898875432212357788999999999999999999999999999 99999999999999999887765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.46  E-value=4.8e-13  Score=83.32  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+++..     ...++.+|..+|.+++|+|+|++|++++.|+. |++||++++..+..+.+|..++. +.|
T Consensus       188 i~-iwd~~~~~-----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~h~~~v~~~~~  256 (321)
T 3ow8_A          188 IN-IFDIATGK-----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLNVAF  256 (321)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EE-EEECCCCc-----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcCCCCceEEEEE
Confidence            45 89998765     88899999999999999999999999999999 99999999999999998887765 443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.45  E-value=1.2e-12  Score=80.54  Aligned_cols=65  Identities=18%  Similarity=0.322  Sum_probs=58.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+++..     +..++.+|...|.+++|+|++..|++++.|+. |++||+++++++..+..+...+.
T Consensus       210 i~-iWd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~~~~~~~  274 (304)
T 2ynn_A          210 IK-IWDYQTKS-----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSW  274 (304)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCSSSSEE
T ss_pred             EE-EEeCCCCc-----cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccCCCccEE
Confidence            56 89998765     88999999999999999999999999999999 99999999999999987766543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.44  E-value=9.9e-13  Score=82.06  Aligned_cols=65  Identities=11%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ...++.+|.++|.+++|+|++++|++++.|+. |++||++++.++..+.+|..+++
T Consensus       166 i~-~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~-v~~wd~~~~~~~~~~~~h~~~v~  230 (340)
T 1got_B          166 CA-LWDIETGQ-----QTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLWDVREGMCRQTFTGHESDIN  230 (340)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCcCCEE
Confidence            56 89998765     78889999999999999999999999999999 99999999999999998887765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.43  E-value=1.2e-12  Score=80.61  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=56.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK-VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ....+.+|.+.|.+++|+|++++|++++.|++ |++||++++ .....+.+|..++.
T Consensus        79 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           79 IR-VFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT-VKLWNWENNWALEQTFEGHEHFVM  144 (304)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEEGGGTTEEEEEECCCCSCEE
T ss_pred             EE-EEECCCCc-----EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe-EEEEECCCCcchhhhhcccCCcEE
Confidence            56 89988775     88899999999999999999999999999999 999999887 45567777777665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.43  E-value=5.9e-13  Score=85.15  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=59.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+++..     +..++.+|.+.|.+++|+|+|++|++++.|+. |++||+++++++..+.+|...+.
T Consensus       320 i~-iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~~~~~h~~~v~  384 (410)
T 1vyh_C          320 IK-MWDVSTGM-----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNAHEHFVT  384 (410)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEECCSSCEE
T ss_pred             EE-EEECCCCc-----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEcCCCCcEE
Confidence            56 89998775     88899999999999999999999999999999 99999999999999998887765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.43  E-value=1.1e-12  Score=81.28  Aligned_cols=67  Identities=22%  Similarity=0.378  Sum_probs=57.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      ++ +||+.+..     ....+.+|..+|++++|+|+|++|++++.|+. |++||+++++.+..+..+.....++
T Consensus       178 i~-~wd~~~~~-----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~  244 (319)
T 3frx_A          178 VK-AWNLNQFQ-----IEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLA  244 (319)
T ss_dssp             EE-EEETTTTE-----EEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEE
T ss_pred             EE-EEECCcch-----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEE
Confidence            45 89987765     77888999999999999999999999999999 9999999999998888664443344

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.43  E-value=7.9e-13  Score=84.54  Aligned_cols=65  Identities=15%  Similarity=0.327  Sum_probs=59.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ..+++.+|.++|.+++|+|+|++|++++.|++ |++||+.++.++..+.+|...+.
T Consensus       132 i~-vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~-i~iwd~~~~~~~~~~~~h~~~V~  196 (410)
T 1vyh_C          132 IK-VWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMT-IKLWDFQGFECIRTMHGHDHNVS  196 (410)
T ss_dssp             EE-EEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSC-CCEEETTSSCEEECCCCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCceeEEEcCCCCCEE
Confidence            56 89988775     88999999999999999999999999999999 99999999999999998887765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.42  E-value=1.5e-12  Score=82.36  Aligned_cols=73  Identities=12%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe-eCCCCCeE-EeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL-RRGSDPAT-LYW   78 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~~-~~w   78 (78)
                      ++. +||+...... ....+.+.+|..+|++++|||||++||+|+.|++ |+|||+++++++..+ .+|..+++ ++|
T Consensus       246 ~i~-~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iwd~~~~~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          246 VLT-KISIKSGNTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALVKLKDLSMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             EEE-EEEEETTEEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred             EEe-ecccccceec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEEECCCCcEEEEecCcccCCEEEEEE
Confidence            455 6777654310 0134567789999999999999999999999999 999999999999886 57888776 543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.42  E-value=2.8e-12  Score=77.98  Aligned_cols=65  Identities=15%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. |||+.++.     +.+++.  +|...|.+++|+|+|++|++|+.|+. |++||+++++++..+.+|...+.
T Consensus        47 V~-iWd~~tg~-----~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~-v~iw~~~~~~~~~~~~~h~~~~~  113 (318)
T 4ggc_A           47 VY-LWSASSGD-----ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVG  113 (318)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEE
T ss_pred             EE-EEECCCCC-----EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc-EEEeecCCceeEEEecCccceEE
Confidence            45 89988765     666664  67888999999999999999999999 99999999999999998876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.42  E-value=4.8e-13  Score=81.33  Aligned_cols=51  Identities=20%  Similarity=0.418  Sum_probs=46.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      +. +||+.+..     .++++.+|.++|++++|+|||++|+|++.|++ |++||+.+.
T Consensus       266 i~-iwd~~~~~-----~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~-v~iWd~~~~  316 (318)
T 4ggc_A          266 LV-IWKYPTMA-----KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFEL  316 (318)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCC
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCC
Confidence            55 89998776     89999999999999999999999999999999 999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.42  E-value=2.1e-12  Score=82.38  Aligned_cols=65  Identities=15%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. |||+.++.     ..+.+.  +|...|++++|+|||++|++|+.|+. |++||+.+++++..+.+|...+.
T Consensus       127 V~-lWd~~tg~-----~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~-v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          127 VY-LWSASSGD-----ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEECCCCC-----EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCe-EEEEEcCCCcEEEEEeCCCCceE
Confidence            45 89988765     555554  67889999999999999999999999 99999999999999998877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.41  E-value=1e-12  Score=80.57  Aligned_cols=55  Identities=24%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             CcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCC-----cEEEEeeCCCCCeE
Q psy1940          20 SPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKK-----VQLVELRRGSDPAT   75 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~-----~~~~~~~~~~~~~~   75 (78)
                      ...+|++|.++|++|+|+|+ +++|+||+.|++ |++||+.++     .+...+++|..++.
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~-i~vWd~~~~~~~~~~~~~~l~~h~~~V~   90 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKT-IIMWKLTRDETNYGIPQRALRGHSHFVS   90 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSC-EEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECCCCCcccceeeEEEeCCCCCEE
Confidence            55679999999999999997 689999999999 999998764     35677788877765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.40  E-value=2.7e-12  Score=80.08  Aligned_cols=70  Identities=17%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             eeeEEEcccCCcC--CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELS--SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~--~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+......  .......+.+|..+|.+++|+|++.++++++.|++ |++||+++++.+..+.+|..++.
T Consensus        51 v~-iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~h~~~v~  122 (343)
T 2xzm_R           51 VM-IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT-LRLWDLRTGTTYKRFVGHQSEVY  122 (343)
T ss_dssp             EE-EEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE-EEEEETTSSCEEEEEECCCSCEE
T ss_pred             EE-EEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCcEEEEEcCCCCcEE
Confidence            56 8998754311  11246778899999999999999999999999999 99999999999999999888765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.40  E-value=3.9e-12  Score=80.01  Aligned_cols=58  Identities=34%  Similarity=0.543  Sum_probs=50.5

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-C-CCCCeE-EeC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-R-GSDPAT-LYW   78 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-~-~~~~~~-~~w   78 (78)
                      ..++.+|.++|.+++|+|+|++|++++.|++.|++||+++++++..++ + |..++. +.|
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~  248 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW  248 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence            788999999999999999999999999999329999999999999998 4 666655 443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.39  E-value=2.9e-12  Score=78.48  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=57.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      ++ +||+++..     ....+.+|.++|++++|+|+|++|++++.|+. |++||+++++.+..+.++.....+
T Consensus       197 i~-i~d~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~  262 (340)
T 4aow_A          197 VK-VWNLANCK-----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINAL  262 (340)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEE
T ss_pred             EE-EEECCCCc-----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEee
Confidence            45 88988765     88889999999999999999999999999999 999999999999888876443334

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.39  E-value=5e-12  Score=77.47  Aligned_cols=65  Identities=28%  Similarity=0.444  Sum_probs=59.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ....+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus        89 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~  153 (312)
T 4ery_A           89 LK-IWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVKTGKCLKTLPAHSDPVS  153 (312)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCEEEEEecCCCCcEE
Confidence            56 89998765     88899999999999999999999999999999 99999999999999998877765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.39  E-value=3.3e-12  Score=80.79  Aligned_cols=61  Identities=25%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||++...    ....++.+|.+.|++++|+|+|++|++++.|++ |++||++++..+..+..+
T Consensus       230 v~-~wd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~  290 (380)
T 3iz6_a          230 VR-LWDLRITS----RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNRE  290 (380)
T ss_dssp             EE-EEETTTTC----CCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCC
T ss_pred             EE-EEECCCCC----cceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccc
Confidence            56 89998543    478899999999999999999999999999999 999999999988887654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.39  E-value=3.3e-12  Score=83.39  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=55.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||. +.     ++.+++.+|.++|.+++|+|||++|++++.|+. |++||. +++.+..+.+|..++.
T Consensus        40 v~-iWd~-~~-----~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~-i~vWd~-~~~~~~~~~~~~~~v~  102 (577)
T 2ymu_A           40 VK-LWNR-NG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGHSSSVR  102 (577)
T ss_dssp             EE-EECT-TS-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEET-TSCEEEEECCCSSCEE
T ss_pred             EE-EEEC-CC-----CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEEC-CCCEEEEEECCCCCEE
Confidence            45 8984 33     388999999999999999999999999999999 999995 6788899998887765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.38  E-value=8.3e-13  Score=84.28  Aligned_cols=58  Identities=17%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. +||+.+..     .+.++.+|.++|.+++|+|||++|+|++.|++ |++||+.+..+....+
T Consensus       346 I~-iwd~~~~~-----~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t-vriWdv~~~~~~~~~~  403 (420)
T 4gga_A          346 LV-IWKYPTMA-----KVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFELDPARRRE  403 (420)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSCSSCC----
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCCCCccchhh
Confidence            55 89988775     89999999999999999999999999999999 9999998765554444

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.38  E-value=3.3e-12  Score=80.52  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=56.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+++..     ..+++.+|..+|++++|+|++ ++|++++.|++ |++||+++++.+..+ +|.++++ ++|
T Consensus       251 i~-~wd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~H~~~V~~vaf  319 (357)
T 4g56_B          251 VS-LVNIKNPD-----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-SHRDFVTGVAW  319 (357)
T ss_dssp             EE-EEESSCGG-----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-CCSSCEEEEEE
T ss_pred             ee-EEECCCCc-----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-CCCCCEEEEEE
Confidence            56 89998776     889999999999999999987 57999999999 999999999887665 5666665 554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.37  E-value=1.6e-13  Score=87.31  Aligned_cols=73  Identities=10%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--------CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--------TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--------dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ |||+...+.........+.+|.+.|++++|+|        ||++|++++.|++ |++||++++.++..+..|+.++.
T Consensus       113 v~-lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t-v~~Wd~~~~~~~~~~~~~~~~v~  190 (393)
T 4gq1_A          113 VR-LIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT-LIIWRLTDEGPILAGYPLSSPGI  190 (393)
T ss_dssp             EE-EEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE-EEEEEEETTEEEEEEEECSSCEE
T ss_pred             EE-EEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe-EEEEECCCCceeeeecCCCCCcE
Confidence            56 89987764211123344679999999999998        8999999999999 99999998887777766666654


Q ss_pred             -EeC
Q psy1940          76 -LYW   78 (78)
Q Consensus        76 -~~w   78 (78)
                       ++|
T Consensus       191 ~v~~  194 (393)
T 4gq1_A          191 SVQF  194 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.37  E-value=7e-12  Score=76.81  Aligned_cols=65  Identities=18%  Similarity=0.265  Sum_probs=58.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ....+.+|..+|.+++|+|+|++|++++.|+. |++||+++++++..+.+|...+.
T Consensus        47 i~-iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~v~  111 (312)
T 4ery_A           47 IK-IWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASDDKT-LKIWDVSSGKCLKTLKGHSNYVF  111 (312)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEE
T ss_pred             EE-EEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECCCCE-EEEEECCCCcEEEEEcCCCCCEE
Confidence            56 89987665     77889999999999999999999999999999 99999999999999998877765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.36  E-value=7.4e-12  Score=84.25  Aligned_cols=72  Identities=14%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~   77 (78)
                      +. +||+.............+.+|...|.+++|+|+|++|++++.|+. |++||+.++..+..+.+|..++. ++
T Consensus       407 i~-~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~-v~vwd~~~~~~~~~~~~h~~~v~~~~  479 (694)
T 3dm0_A          407 II-LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE-LRLWDLAAGVSTRRFVGHTKDVLSVA  479 (694)
T ss_dssp             EE-EEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             EE-EEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcceeEEeCCCCCEEEEE
Confidence            45 899876543223356778899999999999999999999999999 99999999999999999888775 44

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.36  E-value=5.1e-12  Score=84.29  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=57.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-------CCCCCeE-
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-------RGSDPAT-   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-------~~~~~~~-   75 (78)
                      ++ +||.....     ...++.+|.+.|++++|+|||++|++++.|++ |++||+.+++.+..+.       +|..++. 
T Consensus       172 v~-lwd~~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~  244 (611)
T 1nr0_A          172 VA-IFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG  244 (611)
T ss_dssp             EE-EEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEE
T ss_pred             EE-EEECCCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCEEE
Confidence            45 88876554     78889999999999999999999999999999 9999999999988884       5666654 


Q ss_pred             EeC
Q psy1940          76 LYW   78 (78)
Q Consensus        76 ~~w   78 (78)
                      +.|
T Consensus       245 v~~  247 (611)
T 1nr0_A          245 LTW  247 (611)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.35  E-value=3.9e-12  Score=80.15  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+.... ........+|.++|.+++|+|+|++|++++.|+. |++||+++++.+..+++|...++
T Consensus       117 v~-lWd~~~~~~~-~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~-v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          117 VE-LWEILEKESL-LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS-VKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             EE-EC---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-Eeecccccee-EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCCCEE
Confidence            56 8998776421 1123345589999999999999999999999999 99999999999999998887766

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.35  E-value=1.1e-11  Score=82.61  Aligned_cols=65  Identities=17%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|...|.+++|+|||++||+++.|++ |++||+.++  .....+++|..++.
T Consensus        41 v~-l~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~-v~lWd~~~~~~~~~~~~~~~~~~v~  107 (611)
T 1nr0_A           41 VY-TVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN-VRIWDTTQTTHILKTTIPVFSGPVK  107 (611)
T ss_dssp             EE-EEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEESSSTTCCEEEEEECSSSCEE
T ss_pred             EE-EecCCCcc-----cCeEecCCCCceEEEEECCCCcEEEEEeCCCC-EEEeECCCCcceeeEeecccCCceE
Confidence            45 88987655     88899999999999999999999999999999 999998754  34566777766654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.34  E-value=4.2e-12  Score=80.06  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+....     ....+.+|.++|.+++|+|++++|++++.|+. |++||+++++.+..+.+|..++. +.|
T Consensus       121 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          121 IK-VLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQ-LKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             EE-EECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             EE-EEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCe-EEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            45 88887654     67777899999999999999999999999999 99999999999999998887765 443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.34  E-value=1.6e-11  Score=77.25  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=58.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+..     ...++.+|...|.+++|+|  +|+.|++++.|+. |++||++++.++..+..|..+++
T Consensus       178 v~-lwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~-v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          178 CA-LWDVESGQ-----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK-AMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred             EE-EEeCCCCe-----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCCCeE
Confidence            56 89998775     8899999999999999987  5789999999999 99999999999999998887765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.34  E-value=9.6e-12  Score=78.96  Aligned_cols=62  Identities=16%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      ++ +||+.+..     ....+.+|...|.+++|+|+|++|++++.|+. |++||++++++...+..+..
T Consensus       147 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~  208 (393)
T 1erj_A          147 IR-IWDIENRK-----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT-VRIWDLRTGQCSLTLSIEDG  208 (393)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSC
T ss_pred             EE-EEECCCCc-----EEEEEccCCCCEEEEEEcCCCCEEEEecCCCc-EEEEECCCCeeEEEEEcCCC
Confidence            56 89987765     78889999999999999999999999999999 99999999988877765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.33  E-value=1.4e-11  Score=76.81  Aligned_cols=59  Identities=20%  Similarity=0.310  Sum_probs=53.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+++..     +..++.+|..+|++++|+|+|++|++++.|+. |++||++++..+..+..
T Consensus       208 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          208 AK-LWDVREGM-----CRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSH  266 (340)
T ss_dssp             EE-EEETTTCS-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC
T ss_pred             EE-EEECCCCe-----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEcc
Confidence            56 89998765     88899999999999999999999999999999 99999999888777654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.32  E-value=1.2e-11  Score=80.70  Aligned_cols=65  Identities=22%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~   77 (78)
                      +. +||. +.     ++.+.+.+|.++|++++|+|||++|++++.|+. |++||. +++++..+.+|..++. +.
T Consensus       491 i~-iw~~-~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~-~~~~~~~~~~h~~~v~~~~  556 (577)
T 2ymu_A          491 VK-LWNR-NG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGHSSSVWGVA  556 (577)
T ss_dssp             EE-EEET-TS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred             EE-EEcC-CC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeC-CCCEEEEEcCCCCCEEEEE
Confidence            56 8884 33     488899999999999999999999999999999 999995 6889999999988875 44

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.6e-11  Score=76.39  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=50.4

Q ss_pred             eeeEEEcccCCc--CCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE-E
Q psy1940           4 LQCSQDLSSTEL--SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT-L   76 (78)
Q Consensus         4 ~~~i~d~~~~~~--~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~-~   76 (78)
                      ++ +||+.....  ...+...++.+|.++|.+++|+|+|++|++++.|++ |++||++.    .+++..+.+|..++. +
T Consensus        82 v~-iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           82 VS-IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS-VWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             EE-EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC-EEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             EE-EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE-EEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            56 898854321  112356788999999999999999999999999999 99999943    256777888877665 4


Q ss_pred             eC
Q psy1940          77 YW   78 (78)
Q Consensus        77 ~w   78 (78)
                      .|
T Consensus       160 ~~  161 (330)
T 2hes_X          160 IW  161 (330)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.31  E-value=2.2e-11  Score=74.91  Aligned_cols=67  Identities=12%  Similarity=0.110  Sum_probs=56.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+..     ....+.+|.++|.+++|+|++++|++++.|+. |++||+.+++.+..+........+.
T Consensus        56 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~  122 (369)
T 3zwl_B           56 AS-VWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVE  122 (369)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             EE-EEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCeEEEE
Confidence            45 89987765     88899999999999999999999999999999 9999999999988888433333344

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.31  E-value=1.6e-11  Score=78.62  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ....+.+|..+|.+++|+|+|+.+++++.|+. |++||+++++++..+.+|..++.
T Consensus       292 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v~  356 (464)
T 3v7d_B          292 LI-VWDVAQMK-----CLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVG  356 (464)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEEeCCCCcEE
Confidence            55 89998765     88899999999999999999999999999999 99999999999999999888776

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.31  E-value=2.3e-11  Score=74.85  Aligned_cols=65  Identities=9%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEe---eCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVEL---RRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~---~~~~~~~~   75 (78)
                      +. +||+.+..     ....+.+|..+|.+++|+| +++.|++++.|+. |++||+++++.+..+   ..|...+.
T Consensus        97 i~-v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~  165 (366)
T 3k26_A           97 IR-IINPITMQ-----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA-LRLWNIQTDTLVAIFGGVEGHRDEVL  165 (366)
T ss_dssp             EE-EECTTTCC-----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred             EE-EEEchhce-----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe-EEEEEeecCeEEEEecccccccCcee
Confidence            45 89987765     7888999999999999999 9999999999999 999999999998888   55665554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.7e-11  Score=77.97  Aligned_cols=65  Identities=15%  Similarity=0.329  Sum_probs=56.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecC--CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-CCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINA--HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-RGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~--h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~~   75 (78)
                      +. +||+++..     ...++.+  |.++|.+++|+|++++|++++.|+. |++||++++.++..+. .|..++.
T Consensus       194 i~-iwd~~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          194 VI-IFDIRTLE-----RLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             EE-EEETTTCC-----EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             EE-EEeCCCCe-----eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecCCCCceE
Confidence            55 89998775     8888887  8999999999999999999999999 9999999999998886 5555544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.30  E-value=2.3e-11  Score=74.62  Aligned_cols=67  Identities=15%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~   75 (78)
                      ++ +||+....   .+...++.+|.++|.+++|+|+  |+.|++++.|++ |++||++++.  .+..+..|..+++
T Consensus        33 v~-iw~~~~~~---~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~-v~iWd~~~~~~~~~~~~~~h~~~v~  103 (297)
T 2pm7_B           33 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VMIWKEENGRWSQIAVHAVHSASVN  103 (297)
T ss_dssp             EE-EEEBCSSC---BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE-EEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred             EE-EEecCCCC---cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE-EEEEEcCCCceEEEEEeecCCCcee
Confidence            56 89986432   2478899999999999999874  899999999999 9999998873  5566776766654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.30  E-value=2.7e-11  Score=73.34  Aligned_cols=66  Identities=17%  Similarity=0.243  Sum_probs=58.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-Ee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~   77 (78)
                      +. +||+++..     ....+.+|.++|.+++|+|+| .|++++.|+. |++||+++++.+..+..+..++. +.
T Consensus       207 i~-i~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~i~~~~  273 (313)
T 3odt_A          207 IK-LVDMHTGD-----VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITLPAISIWSVD  273 (313)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred             EE-EEECCchh-----hhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEeccCceEEEEE
Confidence            56 89998765     888999999999999999999 6999999999 99999999999999988876654 44

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.30  E-value=1.7e-11  Score=75.37  Aligned_cols=71  Identities=17%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc------------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS------------ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~------------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      +. +||+.....  ......+.+|..            +|.+++|+|+|++|++++.|+. |++||+++++++..+..|.
T Consensus       240 i~-i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~  315 (368)
T 3mmy_A          240 VA-IHYINPPNP--AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQLD  315 (368)
T ss_dssp             EE-EEESSCSCH--HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCS
T ss_pred             EE-EEecCCCCc--cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecCCC
Confidence            45 888876531  126777888876            7999999999999999999999 9999999999999999888


Q ss_pred             CCeE-EeC
Q psy1940          72 DPAT-LYW   78 (78)
Q Consensus        72 ~~~~-~~w   78 (78)
                      .+++ +.|
T Consensus       316 ~~v~~~~~  323 (368)
T 3mmy_A          316 QPISACCF  323 (368)
T ss_dssp             SCEEEEEE
T ss_pred             CCceEEEE
Confidence            7765 544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.30  E-value=1.2e-11  Score=83.30  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=57.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+++..     ...++.+|.+.|++++|+|+|++|++++.|+. |++||+++++.+..+..+.....++
T Consensus       543 v~-vwd~~~~~-----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~  609 (694)
T 3dm0_A          543 VK-VWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEANSVIHALC  609 (694)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBCSSCEEEEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecCCCcEEEEE
Confidence            45 89998765     78889999999999999999999999999999 9999999999888877654333344

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.29  E-value=9.5e-12  Score=78.69  Aligned_cols=56  Identities=18%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .+.+++.+|.++|++++|+|+|++|++++.|++ |++||+.++..+..++.|...+.
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~-v~iWd~~~~~~~~~~~~h~~~v~  112 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGR-LIVWNALTSQKTHAIKLHCPWVM  112 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSE-EEEEETTTTEEEEEEECCCTTCC
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCccceEEecCCCCEE
Confidence            467889999999999999999999999999999 99999999999999988766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.29  E-value=2.8e-11  Score=75.67  Aligned_cols=70  Identities=17%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC---cEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~---~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+....   .++..++.+|.++|.+++|+|+|++|++++.|+. |++||++++   .++..+.+|...+. +.|
T Consensus        85 v~-iw~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           85 TC-IWKKNQDD---FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS-VWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EE-EEEECCC----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EE-EEEccCCC---eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe-EEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            45 88876543   1267888999999999999999999999999999 999999876   34566777776655 443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.28  E-value=1.5e-11  Score=76.14  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~   75 (78)
                      ++ +||+.+...   ....++.+|.++|.+++|+|  +|+.|++++.|++ |++||++++  ..+..+.+|..+++
T Consensus        37 v~-lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~-v~iWd~~~~~~~~~~~~~~h~~~V~  107 (316)
T 3bg1_A           37 VK-IFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK-VIIWREENGTWEKSHEHAGHDSSVN  107 (316)
T ss_dssp             EE-EEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC-EEEECCSSSCCCEEEEECCCSSCCC
T ss_pred             EE-EEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE-EEEEECCCCcceEEEEccCCCCceE
Confidence            56 899876531   25678899999999999986  4899999999999 999999987  46677777776654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.28  E-value=5.2e-11  Score=75.31  Aligned_cols=73  Identities=18%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             eeeEEEcccCCcC--CCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEe--eCCCCCeE-Ee
Q psy1940           4 LQCSQDLSSTELS--SSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVEL--RRGSDPAT-LY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~--~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~--~~~~~~~~-~~   77 (78)
                      +. +||+.+....  ..+....+.+|...|.+++|+|+| +.|++++.|+. |++||+++++.+..+  ..|...+. +.
T Consensus       106 v~-vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          106 VM-VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             EE-EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC-EEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred             EE-EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE-EEEEECCCCCccEEEecCCCCCceEEEE
Confidence            56 8998876310  013688899999999999999998 69999999999 999999999999998  66766655 44


Q ss_pred             C
Q psy1940          78 W   78 (78)
Q Consensus        78 w   78 (78)
                      |
T Consensus       184 ~  184 (402)
T 2aq5_A          184 W  184 (402)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.28  E-value=4.2e-11  Score=74.87  Aligned_cols=59  Identities=22%  Similarity=0.393  Sum_probs=53.8

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecC-------------CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINA-------------HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~-------------h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+. +||+++..     ....+.+             |..+|.+++|+|+|++|++++.|+. |++||+++++.+..+.
T Consensus       259 ~i~-i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          259 CIT-LYETEFGE-----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEE-EEETTTCC-----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEE
T ss_pred             eEE-EEECCCCc-----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEe
Confidence            356 89988765     7888888             9999999999999999999999999 9999999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.28  E-value=4.8e-11  Score=74.38  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=46.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ++ +||+++..     ...++.+|.++|.+++|+|+|++|++++.|+. |++||+..
T Consensus       100 v~-lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~-i~~wd~~~  149 (343)
T 2xzm_R          100 LR-LWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQILSAGAERE-IKLWNILG  149 (343)
T ss_dssp             EE-EEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEEEEETTSC-EEEEESSS
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE-EEEEeccC
Confidence            56 89998775     88899999999999999999999999999999 99999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.27  E-value=4.5e-11  Score=76.50  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|.++|.+++|+|++ .|++++.|+. |++||+++++.+..+.+|..++.
T Consensus       144 i~-vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~-i~vwd~~~~~~~~~~~~h~~~v~  207 (464)
T 3v7d_B          144 IR-VYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT-VRVWDIKKGCCTHVFEGHNSTVR  207 (464)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC-EEEEECCCCcEEEEECCCCCccE
Confidence            56 89988775     888999999999999999988 9999999999 99999999999999998887765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.27  E-value=1.3e-11  Score=76.98  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=51.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc---EEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV---QLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~---~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+.....   +...++.+|.++|.+++|+|+|++|++++.|+. |++||+.++.   ....+.+|..++. +.|
T Consensus        35 i~-iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~-v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  108 (377)
T 3dwl_C           35 VE-LYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN-AYVYEKRPDGTWKQTLVLLRLNRAATFVRW  108 (377)
T ss_dssp             BC-EEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSS-EEEC------CCCCEEECCCCSSCEEEEEC
T ss_pred             EE-EEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe-EEEEEcCCCCceeeeeEecccCCceEEEEE
Confidence            45 899876510   267778899999999999999999999999999 9999999877   6677777776665 544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.27  E-value=4.5e-11  Score=75.15  Aligned_cols=59  Identities=17%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+++..     +..++.+|...|++++|+|+|+.|++++.|++ |++||++++..+..+..
T Consensus       222 v~-~wd~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~  280 (354)
T 2pbi_B          222 AM-VWDMRSGQ-----CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSK  280 (354)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC
T ss_pred             EE-EEECCCCc-----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcC
Confidence            45 89998765     88899999999999999999999999999999 99999998887766654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.26  E-value=5.2e-11  Score=75.58  Aligned_cols=68  Identities=16%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCc------------------cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQ------------------SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~------------------~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      ++ +|++.++.     ....+..|.                  ..|.+++|+|||++|++++.|+. |++||+.+++.+.
T Consensus        87 v~-i~~~~~g~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~  159 (393)
T 1erj_A           87 TQ-VYRVSDGS-----LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVM  159 (393)
T ss_dssp             EE-EEETTTCC-----EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEE
T ss_pred             EE-EEEecCCC-----EEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEE
Confidence            45 78887654     555554443                  24899999999999999999999 9999999999999


Q ss_pred             EeeCCCCCeE-EeC
Q psy1940          66 ELRRGSDPAT-LYW   78 (78)
Q Consensus        66 ~~~~~~~~~~-~~w   78 (78)
                      .+.+|..++. +.|
T Consensus       160 ~~~~h~~~v~~~~~  173 (393)
T 1erj_A          160 ILQGHEQDIYSLDY  173 (393)
T ss_dssp             EECCCSSCEEEEEE
T ss_pred             EEccCCCCEEEEEE
Confidence            9998887765 443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.26  E-value=5.2e-11  Score=75.03  Aligned_cols=60  Identities=23%  Similarity=0.412  Sum_probs=54.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+.+..     ....+.+|.++|.+++|+|+|+.|++++.|+. |++||+++++.+..+..+
T Consensus       163 i~-iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~  222 (420)
T 3vl1_A          163 LK-IWSVKDGS-----NPRTLIGHRATVTDIAIIDRGRNVLSASLDGT-IRLWECGTGTTIHTFNRK  222 (420)
T ss_dssp             EE-EEETTTCC-----CCEEEECCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTEEEEEECBT
T ss_pred             EE-EEeCCCCc-----CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc-EEEeECCCCceeEEeecC
Confidence            56 89998775     88899999999999999999999999999999 999999999999888753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.26  E-value=3.8e-11  Score=74.69  Aligned_cols=69  Identities=10%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+.. ...++..++.+|...|.+++|+|++++|++++.|++ |++||..++  .++..+.+|..++.
T Consensus       131 v~-iwd~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~iW~~~~~~~~~~~~~~~h~~~v~  201 (330)
T 2hes_X          131 VW-IWETDESG-EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT-VRIWKDYDDDWECVAVLNGHEGTVW  201 (330)
T ss_dssp             EE-EEECCTTC-CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             EE-EEeccCCC-CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCeeEEEEccCCCCcEE
Confidence            45 89985432 112356788999999999999999999999999999 999998776  67788888877664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.26  E-value=6.1e-11  Score=75.14  Aligned_cols=69  Identities=17%  Similarity=0.394  Sum_probs=58.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||++...    .....+.+|.++|.+++|+|+|++|++++.|+. |++||++++..+..+..|..++. +.|
T Consensus       198 i~-i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~v~~~~~  267 (401)
T 4aez_A          198 IH-HHDVRIAN----HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV-VQIWDARSSIPKFTKTNHNAAVKAVAW  267 (401)
T ss_dssp             EE-EEETTSSS----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCSSEEEEECCCSSCCCEEEE
T ss_pred             EE-EEecccCc----ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe-EEEccCCCCCccEEecCCcceEEEEEE
Confidence            45 89987543    478888999999999999999999999999999 99999999999998887766654 443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.4e-11  Score=76.23  Aligned_cols=67  Identities=16%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             eeeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .+. +||+++..    .....+. +|..+|.+++|+| ++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus       241 ~i~-~~d~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~~~~~~~~~~~~v~  309 (416)
T 2pm9_A          241 SIL-IWDLRNAN----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAEQLSQFPARGNWCF  309 (416)
T ss_dssp             CCC-EEETTSTT----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCCEEEEEECSSSCCC
T ss_pred             eEE-EEeCCCCC----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCccceeecCCCCceE
Confidence            456 89998753    3677788 8999999999999 9999999999999 99999999999999998876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.25  E-value=5.2e-11  Score=83.74  Aligned_cols=65  Identities=25%  Similarity=0.424  Sum_probs=59.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++.
T Consensus       639 i~-vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~v~  703 (1249)
T 3sfz_A          639 LQ-VFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKK-VKIWDSATGKLVHTYDEHSEQVN  703 (1249)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEE
T ss_pred             EE-EEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCe-EEEEECCCCceEEEEcCCCCcEE
Confidence            55 89998776     88899999999999999999999999999999 99999999999999998887765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.25  E-value=3.3e-11  Score=73.96  Aligned_cols=56  Identities=25%  Similarity=0.357  Sum_probs=48.5

Q ss_pred             EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC--CcEEEEeeCCCCCeE-EeC
Q psy1940          22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK--KVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~--~~~~~~~~~~~~~~~-~~w   78 (78)
                      ..+.+|.++|++++|+|+|++|++++.|+. |++||+.+  ++.+..+.+|..++. +.|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~-v~iw~~~~~~~~~~~~l~gH~~~V~~v~~   61 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW   61 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEEBCSSCBCCCEEECCCSSCEEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCE-EEEEecCCCCcEEEEEEccccCCeEEEEe
Confidence            457899999999999999999999999999 99999874  467788999988875 543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.25  E-value=3.8e-11  Score=74.74  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=54.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE-EEeeC-CCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL-VELRR-GSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~-~~~~~-~~~~~~   75 (78)
                      +. +||+.+..     ....+. .|..+|.+++|+|+|.+|++|+.|+. |++||+++++.+ ..++. |..+++
T Consensus       151 i~-~wd~~~~~-----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~  218 (343)
T 3lrv_A          151 IG-FQSYEDDS-----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRFPVDEEAKIK  218 (343)
T ss_dssp             EE-EEESSSSC-----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCTTSCCEECCCCTTSCEE
T ss_pred             EE-EEECCCCc-----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCCCCccEEeccCCCCEE
Confidence            45 89998765     555554 45668999999999999999999999 999999999887 78887 777765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.23  E-value=6e-11  Score=75.01  Aligned_cols=62  Identities=18%  Similarity=0.311  Sum_probs=54.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEe--cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe-eCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI--NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL-RRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~--~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~-~~~~~   72 (78)
                      +. +||+.+..     ...++  .+|.+.|.+++|+|+|+.|++++.|+. |++||++++..+..+ ..|..
T Consensus       156 i~-iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~  220 (402)
T 2aq5_A          156 IL-VWDVGTGA-----AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR-VRVIEPRKGTVVAEKDRPHEG  220 (402)
T ss_dssp             EE-EEETTTTE-----EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE-EEEEETTTTEEEEEEECSSCS
T ss_pred             EE-EEECCCCC-----ccEEEecCCCCCceEEEEECCCCCEEEEEecCCc-EEEEeCCCCceeeeeccCCCC
Confidence            45 89998765     78888  789999999999999999999999999 999999999999888 55554

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.23  E-value=8.9e-11  Score=73.39  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             eeeEEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ +||+.....   .+... ..+|...|.+++|+|+|++|++++.|+. +++||..++  .++..+++|..++. +.|
T Consensus        40 i~-iw~~~~~~~---~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~-v~iw~~~~~~~~~~~~~~~h~~~v~~v~~  113 (345)
T 3fm0_A           40 IR-IWGTEGDSW---ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT-TCIWKKNQDDFECVTTLEGHENEVKSVAW  113 (345)
T ss_dssp             EE-EEEEETTEE---EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC-EEEEEECCC-EEEEEEECCCSSCEEEEEE
T ss_pred             EE-EEEcCCCcc---eeeeeeccccCCcEEEEEECCCCCEEEEEECCCc-EEEEEccCCCeEEEEEccCCCCCceEEEE
Confidence            56 898875430   01222 3689999999999999999999999999 999998876  46788888887765 544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.23  E-value=7.8e-11  Score=72.45  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=53.3

Q ss_pred             CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          17 SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        17 ~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      .......+.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++. +.|
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~h~~~v~~~~~   82 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSS-ASVWYSLNGERLGTLDGHTGTIWSIDV   82 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSC-EEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCE-EEEEeCCCchhhhhhhhcCCcEEEEEE
Confidence            33456678899999999999999999999999999 99999999999999998887765 443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.23  E-value=1.1e-10  Score=71.69  Aligned_cols=69  Identities=16%  Similarity=0.345  Sum_probs=54.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ +||+.+...   .....+.+|.++|.+++|+|++++|++++.|+. |++||++++..+... .|..++. +.|
T Consensus        66 i~-iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~-~~~~~v~~~~~  135 (368)
T 3mmy_A           66 VR-CWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT-AKMWDLSSNQAIQIA-QHDAPVKTIHW  135 (368)
T ss_dssp             EE-EEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEE-ECSSCEEEEEE
T ss_pred             EE-EEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCc-EEEEEcCCCCceeec-cccCceEEEEE
Confidence            56 899986330   233778899999999999999999999999999 999999998877644 4555544 443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.22  E-value=4.4e-11  Score=80.74  Aligned_cols=68  Identities=12%  Similarity=0.103  Sum_probs=60.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+.+..     ....+.+|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|..++. +.|
T Consensus        37 v~-iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~v~~~~~  105 (814)
T 3mkq_A           37 VE-IWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFR-IRVFNYNTGEKVVDFEAHPDYIRSIAV  105 (814)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EE-EEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEecCCCCEEEEEE
Confidence            45 89987765     88889999999999999999999999999999 99999999999999998887766 544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.22  E-value=1.1e-10  Score=70.77  Aligned_cols=72  Identities=19%  Similarity=0.308  Sum_probs=56.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCC---------cEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKK---------VQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~---------~~~~~~~~~~~   72 (78)
                      +. +||+.+.. ...+....+.+|..+|.+++|+|  |+++|++++.|+. |++||++++         +.+..+..|..
T Consensus        35 i~-iw~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  111 (351)
T 3f3f_A           35 IK-VFKLDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT-VKLWEEDPDQEECSGRRWNKLCTLNDSKG  111 (351)
T ss_dssp             EE-EEEECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC-EEEEEECTTSCTTSSCSEEEEEEECCCSS
T ss_pred             EE-EEECCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe-EEEEecCCCcccccccCcceeeeecccCC
Confidence            56 89987653 11125667789999999999999  6999999999999 999999887         56777877777


Q ss_pred             CeE-EeC
Q psy1940          73 PAT-LYW   78 (78)
Q Consensus        73 ~~~-~~w   78 (78)
                      ++. +.|
T Consensus       112 ~v~~~~~  118 (351)
T 3f3f_A          112 SLYSVKF  118 (351)
T ss_dssp             CEEEEEE
T ss_pred             ceeEEEE
Confidence            665 443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.21  E-value=2.6e-11  Score=75.07  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=43.0

Q ss_pred             EEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE-EeC
Q psy1940          22 VTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT-LYW   78 (78)
Q Consensus        22 ~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~-~~w   78 (78)
                      ..+.+|.++|++++|+|+|++|++++.|++ |++||++++.  .+..+++|..++. +.|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~-v~lwd~~~~~~~~~~~l~gH~~~V~~v~~   65 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRS-VKIFDVRNGGQILIADLRGHEGPVWQVAW   65 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTE-EEEEEEETTEEEEEEEEECCSSCEEEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCe-EEEEEecCCCcEEEEEEcCCCccEEEEEe
Confidence            345689999999999999999999999999 9999998774  5678888888776 544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.20  E-value=6.3e-11  Score=77.40  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=58.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecC-CccCEEEEEECC----------CCCEEEEEcCCCCEEEEeeCCCC-cEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINA-HQSELACLALNQ----------TGTMIATASSKGTLIRVWDTLKK-VQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~-h~~~i~~v~fs~----------dg~~l~s~~~d~~~i~i~d~~~~-~~~~~~~~~~   71 (78)
                      +. +||+.+..     ....+.+ |..+|.+++|+|          +|++|++++.|+. |++||+.++ .++..+.+|.
T Consensus       512 i~-iw~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~h~  584 (615)
T 1pgu_A          512 IL-LYDLQSRE-----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNAHK  584 (615)
T ss_dssp             EE-EEETTTTE-----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTSST
T ss_pred             EE-EeeCCCCc-----ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc-EEEEECCCCceechhhhcCc
Confidence            56 89998765     7777877 999999999999          9999999999999 999999998 7888888887


Q ss_pred             CCeE-EeC
Q psy1940          72 DPAT-LYW   78 (78)
Q Consensus        72 ~~~~-~~w   78 (78)
                      .++. +.|
T Consensus       585 ~~v~~l~~  592 (615)
T 1pgu_A          585 DGVNNLLW  592 (615)
T ss_dssp             TCEEEEEE
T ss_pred             cceEEEEE
Confidence            7765 544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.20  E-value=2.4e-11  Score=78.04  Aligned_cols=48  Identities=13%  Similarity=0.136  Sum_probs=41.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEE-EEEECCCCCEEEEEcCCCCEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELA-CLALNQTGTMIATASSKGTLIRVWDT   58 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~-~v~fs~dg~~l~s~~~d~~~i~i~d~   58 (78)
                      ++ |||+.++.     +.+++.+|.+.+. +++|+|||++|++|+.|++ |++||+
T Consensus       307 Ik-IWDl~tGk-----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~  355 (356)
T 2w18_A          307 IA-IWDLLLGQ-----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY  355 (356)
T ss_dssp             EE-EEETTTCS-----EEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred             EE-EEECCCCc-----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence            56 99998876     9999999987655 6899999999999999999 999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.19  E-value=2.6e-10  Score=72.25  Aligned_cols=65  Identities=9%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecC-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINA-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ....+.. |..+|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+|...+.
T Consensus       115 v~-lw~~~~~~-----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~  180 (401)
T 4aez_A          115 VY-VWNADSGS-----VSALAETDESTYVASVKWSHDGSFLSVGLGNGL-VDIYDVESQTKLRTMAGHQARVG  180 (401)
T ss_dssp             EE-EEETTTCC-----EEEEEECCTTCCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred             EE-EeeCCCCc-----EeEeeecCCCCCEEEEEECCCCCEEEEECCCCe-EEEEECcCCeEEEEecCCCCceE
Confidence            45 89987765     5566654 8899999999999999999999999 99999999999999998877765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.18  E-value=1.8e-10  Score=71.20  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +....+.+|..+|.+++|+|+|++|++++.|+. |++||+++++.+..+..+..++. +.|
T Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~v~~~~~  252 (372)
T 1k8k_C          193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAVATLASETLPLLAVTF  252 (372)
T ss_dssp             CEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred             hheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceeEEEccCCCCeEEEEE
Confidence            477888899999999999999999999999999 99999999999999998876654 443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.3e-10  Score=71.83  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~   75 (78)
                      +. +||+....   .+....+.+|.++|.+++|+|+  +++|++++.|+. |++||++++.  .+..+..|..++.
T Consensus        35 i~-iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~  105 (379)
T 3jrp_A           35 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVN  105 (379)
T ss_dssp             EE-EEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             EE-EEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE-EEEEEcCCCceeEeeeecCCCcceE
Confidence            45 89987432   1377788999999999999987  999999999999 9999999986  6777777776665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.17  E-value=3.2e-10  Score=69.49  Aligned_cols=70  Identities=14%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             eeeEEEcccCC-cCCCCCcEEecCCcc---------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC-CC
Q psy1940           4 LQCSQDLSSTE-LSSSSSPVTINAHQS---------ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG-SD   72 (78)
Q Consensus         4 ~~~i~d~~~~~-~~~~~~~~~~~~h~~---------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~-~~   72 (78)
                      +. +||+.... ....+....+..|..         +|.+++|+|+|++|++++.|+. |++||+++++.+..+..| ..
T Consensus       218 i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~h~~  295 (342)
T 1yfq_A          218 VA-VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNED  295 (342)
T ss_dssp             EE-EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCSSS
T ss_pred             EE-EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccHhHhhhhhcccCC
Confidence            45 78876651 011247788888865         9999999999999999999999 999999999999999887 66


Q ss_pred             CeE
Q psy1940          73 PAT   75 (78)
Q Consensus        73 ~~~   75 (78)
                      ++.
T Consensus       296 ~v~  298 (342)
T 1yfq_A          296 SVV  298 (342)
T ss_dssp             EEE
T ss_pred             Cce
Confidence            654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.17  E-value=2.7e-10  Score=69.41  Aligned_cols=67  Identities=22%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+..     ....+..|..+|.+++|+|+++.|++++.|+. |++||+++++.+..+........+.
T Consensus       165 v~-~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~v~~~~  231 (337)
T 1gxr_A          165 IA-VWDLHNQT-----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHDFTSQIFSLG  231 (337)
T ss_dssp             EE-EEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             EE-EEeCCCCc-----eeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeecCCCceEEEE
Confidence            45 89988765     78889999999999999999999999999999 9999999998888776544333343

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=4.9e-11  Score=73.69  Aligned_cols=58  Identities=26%  Similarity=0.338  Sum_probs=49.3

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ...++.+|.++|.+++|+|+|++|++++.|+. |++||+.  ++..+..+.+|..++. +.|
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~h~~~v~~~~~   63 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW   63 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCc-EEEEecCCCcceeeeEecCCCCcEEEEEe
Confidence            56678899999999999999999999999999 9999998  5677788888888775 544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=6.1e-11  Score=73.82  Aligned_cols=56  Identities=16%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             eeeEEEcccCCcCCCCCc-EEecC-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940           4 LQCSQDLSSTELSSSSSP-VTINA-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~-~~~~~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      ++ +||+++..     .. .++.. |.++|.+++|+|+|.+|++++.+ . |++||++++..+..+
T Consensus       194 i~-iwd~~~~~-----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~-v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          194 LD-VYNLSSPD-----QASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T-VVCFDLRKDVGTLAY  251 (343)
T ss_dssp             EE-EEESSCTT-----SCCEECCCCTTSCEEEEEECTTSSEEEEEESS-B-EEEEETTSSTTCBSS
T ss_pred             EE-EEECCCCC-----CCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e-EEEEEcCCCCcceee
Confidence            56 89998876     55 78887 99999999999999999999944 8 999999988765443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.17  E-value=9.3e-11  Score=73.05  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. +||+.+..     ....+.+|.++|.+++|+|+|++|++++.|+. |++||+++++.+....
T Consensus       316 i~-v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          316 IA-VYTVYSGE-----QITMLKGHYKTVDCCVFQSNFQELYSGSRDCN-ILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             EE-EEETTTCC-----EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEEECC--------
T ss_pred             EE-EEECcCCc-----ceeeeccCCCeEEEEEEcCCCCEEEEECCCCe-EEEEeCCCCCccCCCC
Confidence            55 89988765     88999999999999999999999999999999 9999999988765544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.15  E-value=1.7e-10  Score=72.54  Aligned_cols=51  Identities=12%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-C-CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-A-HQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~-h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      ++ +||+++..     +..++. + |.++|++++|+|||++|++++.|++ |++||++.+
T Consensus       220 v~-iwd~~~~~-----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~  272 (355)
T 3vu4_A          220 IR-VFKTEDGV-----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFND  272 (355)
T ss_dssp             EE-EEETTTCC-----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCC
T ss_pred             EE-EEECCCCc-----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCC
Confidence            67 99998776     888898 5 9999999999999999999999999 999999765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.14  E-value=2.7e-10  Score=69.12  Aligned_cols=57  Identities=19%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC----cEEEEeeCCCCCeE-EeC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK----VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~----~~~~~~~~~~~~~~-~~w   78 (78)
                      ...+.+|.++|.+++|+|+|++|++++.|+. |++||+.++    ..+..+.+|..++. +.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~   65 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQH-IKVFKLDKDTSNWELSDSWRAHDSSIVAIDW   65 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSE-EEEEEECSSSCCEEEEEEEECCSSCEEEEEE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCe-EEEEECCCCCCcceecceeccCCCcEEEEEE
Confidence            3456799999999999999999999999999 999999876    46677788877766 443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.14  E-value=3.6e-10  Score=70.61  Aligned_cols=65  Identities=17%  Similarity=0.294  Sum_probs=57.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+....     ....+..|..+|.+++|+|++++|++++.|+. |++||++++..+..+..|..++.
T Consensus       229 i~-~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~i~  293 (425)
T 1r5m_A          229 IF-VYQITEKT-----PTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGGNGNSQNCFYGHSQSIV  293 (425)
T ss_dssp             EE-EEETTCSS-----CSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSSSBSCSEEECCCSSCEE
T ss_pred             EE-EEEcCCCc-----eeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCccceEecCCCccEE
Confidence            45 88988765     78889999999999999999999999999999 99999999998888887766654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.14  E-value=1.9e-10  Score=71.84  Aligned_cols=60  Identities=17%  Similarity=0.283  Sum_probs=53.3

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecC---C---ccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEEeeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINA---H---QSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~---h---~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+. +||+++..     ....+..   |   ..+|.+++|+|++++|++++.|   +. |++||+++++.+..+..
T Consensus       208 ~i~-i~d~~~~~-----~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          208 TVQ-ISELSTLR-----PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSV  276 (397)
T ss_dssp             EEE-EEETTTTE-----EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECB
T ss_pred             cEE-EEECCCCc-----eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceecc
Confidence            356 89998765     7888888   9   9999999999999999999999   99 99999999999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.14  E-value=5.9e-10  Score=71.25  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=56.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ....+.+|.++|.+++|  +++.|++++.|+. |++||+.+++.+..+.+|..++.
T Consensus       155 i~-iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h~~~v~  217 (435)
T 1p22_A          155 IK-IWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDST-VRVWDVNTGEMLNTLIHHCEAVL  217 (435)
T ss_dssp             EE-EEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEESSSCCEEEEECCCCSCEE
T ss_pred             EE-EEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCe-EEEEECCCCcEEEEEcCCCCcEE
Confidence            56 89987765     88899999999999999  7889999999999 99999999999999998877765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.5e-10  Score=71.35  Aligned_cols=68  Identities=18%  Similarity=0.162  Sum_probs=58.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--------------------E
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--------------------Q   63 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--------------------~   63 (78)
                      +. +||+.+..     ....+..|..+|.+++|+|+|++|++++.|+. |++||++++.                    .
T Consensus       312 i~-i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (425)
T 1r5m_A          312 VR-LWSLKQNT-----LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPL  384 (425)
T ss_dssp             EE-EEETTTTE-----EEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCE
T ss_pred             EE-EEECCCCc-----EeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchh
Confidence            55 89988765     88888999999999999999999999999999 9999999888                    8


Q ss_pred             EEEeeCCCC--CeE-EeC
Q psy1940          64 LVELRRGSD--PAT-LYW   78 (78)
Q Consensus        64 ~~~~~~~~~--~~~-~~w   78 (78)
                      +..+..|..  ++. +.|
T Consensus       385 ~~~~~~~~~~~~v~~~~~  402 (425)
T 1r5m_A          385 YASYQSSQDNDYIFDLSW  402 (425)
T ss_dssp             EEEECCTTCCCCEEEEEE
T ss_pred             hhhhcCcccCCceEEEEc
Confidence            888888754  544 443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.13  E-value=7.5e-10  Score=67.39  Aligned_cols=67  Identities=19%  Similarity=0.322  Sum_probs=56.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..   ......+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+..|..++.
T Consensus       121 i~-~~d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          121 LS-IWDLAAPT---PRIKAELTSSAPACYALAISPDSKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             EE-EEECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEECCCCC---cceeeecccCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceeeeeecccCceE
Confidence            45 88887654   1256677889999999999999999999999999 99999999999999988777665

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.13  E-value=6e-10  Score=71.41  Aligned_cols=71  Identities=28%  Similarity=0.522  Sum_probs=57.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK-KVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||++...  ..+....+..|...|++++|+|++. .|++++.|+. |++||+++ +..+..+..|..++. +.|
T Consensus       256 i~-i~d~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h~~~v~~i~~  329 (430)
T 2xyi_A          256 LM-IWDTRNNN--TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQW  329 (430)
T ss_dssp             EE-EEETTCSC--SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEECCSSCEEEEEE
T ss_pred             EE-EEECCCCC--CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeecCCCCEEEEEE
Confidence            56 89998763  1247778889999999999999987 6889999999 99999998 567788887776665 544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.11  E-value=5e-11  Score=74.32  Aligned_cols=54  Identities=11%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE----EEEeeCCCCCeE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ----LVELRRGSDPAT   75 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~~   75 (78)
                      ....+ +|.++|.+++|+|+|++|++++.|+. |++||++++..    +..+..|..++.
T Consensus       198 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~v~  255 (377)
T 3dwl_C          198 VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQPPRALITVKLSQLPLR  255 (377)
T ss_dssp             EEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTSCEEECCCEECSSSCEE
T ss_pred             hhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCCcceeeEeecCCCCceE
Confidence            45555 89999999999999999999999999 99999999877    777788777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.11  E-value=7.7e-10  Score=72.27  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=56.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEe-e---CCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVEL-R---RGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~-~---~~~~~~~   75 (78)
                      +. +||+.+..     ....+.+|..   +|.+++|+|+ |++|++++.|+. |++||+++++.+..+ .   .|..++.
T Consensus       185 v~-vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          185 VV-FYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             EE-EEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             EE-EEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCEeEEecccccccCCceE
Confidence            45 89987665     7888999999   9999999999 999999999999 999999999999998 5   6666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.10  E-value=2.8e-10  Score=72.97  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC-CCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ-TGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~-dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      +. |||+....   ......+.+|.++|++++|+| ++++|++++.|++ |++||++++...
T Consensus       144 i~-lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~-v~iwd~~~~~~~  200 (435)
T 4e54_B          144 IM-LWNFGIKD---KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT-TRLQDFKGNILR  200 (435)
T ss_dssp             EE-EECSSCCS---CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC-EEEEETTSCEEE
T ss_pred             EE-EEECCCCC---ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE-EEEeeccCCcee
Confidence            45 89887654   124445668999999999998 7899999999999 999999866543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.10  E-value=2.1e-10  Score=73.56  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+++....  .......+|..+|++++|+|+|++|++++.|+. |++||++++.+...+..|
T Consensus       275 v~-iwd~~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~  337 (435)
T 4e54_B          275 VK-IWDLRQVRGK--ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPH  337 (435)
T ss_dssp             CC-EEETTTCCSS--SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCC
T ss_pred             ee-EEeccccccc--ceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecc
Confidence            45 8999876521  233334689999999999999999999999999 999999998877766544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.08  E-value=1e-10  Score=77.78  Aligned_cols=68  Identities=7%  Similarity=-0.049  Sum_probs=56.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc--CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS--ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ |||+++..     +..++.+|..  .|.+++|+|+++.+++++.|++ |++||++++.++..+.+|..++. +.|
T Consensus       335 vk-lWD~~~~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~gH~~~V~sva~  405 (524)
T 2j04_B          335 FY-IFNPKDIA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVSRETTITAIGV  405 (524)
T ss_dssp             EE-EECGGGHH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE-EEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred             EE-EEECCCCC-----cccccccccccCcccceEeCCCcCeEEEeCCCCc-EEEEECcccccceeeecCCCceEEEEe
Confidence            56 99998765     6667777753  5889999999999999999999 99999999998888888887765 544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.08  E-value=1.1e-09  Score=70.20  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC--------------CcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK--------------KVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~--------------~~~~~~~~   68 (78)
                      +. +||+++..    ..+.++..|.++|.+++|+|+++ .|++++.|+. |++||++.              ...+..+.
T Consensus       302 v~-vwd~~~~~----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  375 (430)
T 2xyi_A          302 VA-LWDLRNLK----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHG  375 (430)
T ss_dssp             EE-EEETTCTT----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEECC
T ss_pred             EE-EEeCCCCC----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEcC
Confidence            56 89998754    47889999999999999999995 6999999999 99999986              35667777


Q ss_pred             CCCCCeE-EeC
Q psy1940          69 RGSDPAT-LYW   78 (78)
Q Consensus        69 ~~~~~~~-~~w   78 (78)
                      +|..+++ +.|
T Consensus       376 ~h~~~v~~~~~  386 (430)
T 2xyi_A          376 GHTAKISDFSW  386 (430)
T ss_dssp             CCSSCEEEEEE
T ss_pred             CCCCCceEEEE
Confidence            7776554 554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.08  E-value=3.5e-10  Score=73.35  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             eeeEEEcccCCcCC---CCC---cEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-
Q psy1940           4 LQCSQDLSSTELSS---SSS---PVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~---~~~---~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-   75 (78)
                      ++ +||+.+.....   .+.   ...+.+|...|.+++|+|+ ++.|++++.|+. |++||++++..+....+|...+. 
T Consensus       120 v~-iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~~~~~~~~~~~~~v~~  197 (434)
T 2oit_A          120 IA-FFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTETVKVCATLPSTVAVTS  197 (434)
T ss_dssp             EE-EEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSSEEEEEEECGGGCEEE
T ss_pred             EE-EEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCCcceeeccCCCCceeE
Confidence            46 89987651110   011   3556679999999999998 899999999999 99999999877666665555544 


Q ss_pred             EeC
Q psy1940          76 LYW   78 (78)
Q Consensus        76 ~~w   78 (78)
                      ++|
T Consensus       198 v~w  200 (434)
T 2oit_A          198 VCW  200 (434)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.07  E-value=4.6e-10  Score=72.13  Aligned_cols=62  Identities=8%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC---CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ---TGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~---dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++ +|++....    +....+.+|...++.++|+|   +++.|++++.|++ |+|||+++|++++++.+|+
T Consensus       159 V~-~~~~s~dG----~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~T-IkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          159 VE-VMTFAEDG----GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNN-IVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             EE-EEEECTTS----CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSE-EEEEETTTCCEEEEEECCC
T ss_pred             EE-EEEECCCC----ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCc-EEEEECCCCcEEEEEcCCC
Confidence            45 67774432    36667778888888888888   7799999999999 9999999999999998654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.6e-10  Score=76.82  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEE--EECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACL--ALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v--~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+.+..    ....++.+|.++|.+|  +|+|+| +.|+|++.|++ |++||+++++++..+.+|
T Consensus       289 V~-lWD~~~~~----~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          289 VA-EFDLTDPE----VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             EE-EEETTBCS----SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGGHHHHCEEEEE
T ss_pred             EE-EEECCCCC----CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCCCCcccccccc
Confidence            56 99998653    3567789999999999  679998 89999999999 999999988766555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.07  E-value=1.4e-09  Score=73.48  Aligned_cols=65  Identities=18%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|.++|.+++|+|+|+.|++++.|+. |++||+.++..+..+..+..++.
T Consensus       210 i~-~~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~~~~v~  274 (814)
T 3mkq_A          210 IK-IWDYQTKS-----CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVGLERSW  274 (814)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCSSSSEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecCCCcEE
Confidence            56 89987765     78889999999999999999999999999999 99999999999988887765544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.07  E-value=3.9e-10  Score=69.26  Aligned_cols=68  Identities=18%  Similarity=0.320  Sum_probs=53.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEe-----cCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCC----------------
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI-----NAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKK----------------   61 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~-----~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~----------------   61 (78)
                      +. +||+++..     ....+     .+|...|.+++|+|+|+ +|++++.|+. |++||++++                
T Consensus       236 i~-i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~  308 (357)
T 3i2n_A          236 FH-VFDMRTQH-----PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVA  308 (357)
T ss_dssp             EE-EEEEEEEE-----TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCC
T ss_pred             EE-EEeCcCCC-----cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccc
Confidence            56 89988765     43334     48999999999999998 8999999999 999998754                


Q ss_pred             ---cEEEEeeCCCCCeE-EeC
Q psy1940          62 ---VQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        62 ---~~~~~~~~~~~~~~-~~w   78 (78)
                         ..+..+.+|..++. +.|
T Consensus       309 ~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          309 GSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             CEEEEEEEEECCSSCEEEEEE
T ss_pred             cccceeeccccCCCCeeEEEE
Confidence               35677777777765 544

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.06  E-value=3.9e-10  Score=71.39  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=50.2

Q ss_pred             eeeEEEcccCCcCCCCCcE-------EecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcE----EEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPV-------TINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQ----LVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~-------~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~----~~~~~~~~   71 (78)
                      +. +||+....    +...       .+.+|...|.+++|+|+| +.|++++.|+. |++||++++..    +..+..+.
T Consensus       200 i~-iwd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~  273 (447)
T 3dw8_B          200 IN-LWHLEITD----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALCDRHSKLFEEPE  273 (447)
T ss_dssp             EE-EEETTEEE----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSSCTTCEEECCC-
T ss_pred             EE-EEECCCCC----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCccccceeeEeccCC
Confidence            56 89987433    1333       366899999999999999 99999999999 99999999886    67787776


Q ss_pred             C
Q psy1940          72 D   72 (78)
Q Consensus        72 ~   72 (78)
                      .
T Consensus       274 ~  274 (447)
T 3dw8_B          274 D  274 (447)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.06  E-value=1.2e-09  Score=68.31  Aligned_cols=65  Identities=20%  Similarity=0.361  Sum_probs=52.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE-Ee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT-LY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~-~~   77 (78)
                      +. +||+. .     +....+.+|.+.|.+++|+|+++ .|++++.|+. |++||+++    +..+..+. |..++. +.
T Consensus       187 i~-i~d~~-~-----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~  257 (383)
T 3ei3_B          187 LL-LLGLD-G-----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDLRNIKDKNSYIAEMP-HEKPVNAAY  257 (383)
T ss_dssp             EE-EEETT-S-----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEGGGCCSTTCEEEEEE-CSSCEEEEE
T ss_pred             EE-EEECC-C-----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeCCCCCcccceEEEec-CCCceEEEE
Confidence            45 88983 3     37888999999999999999999 9999999999 99999997    66777664 444443 44

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.06  E-value=6.8e-10  Score=68.27  Aligned_cols=68  Identities=13%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecC-----CccCEEEEEECCC----CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINA-----HQSELACLALNQT----GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~-----h~~~i~~v~fs~d----g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +. +||+.+..     ....+..     |...|.+++|+|+    |++|++++.|+. |++||+.+++.+..+.+|..++
T Consensus        46 v~-vw~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~i  118 (366)
T 3k26_A           46 VT-LYECHSQG-----EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI-IRIINPITMQCIKHYVGHGNAI  118 (366)
T ss_dssp             EE-EEEECGGG-----CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE-EEEECTTTCCEEEEEESCCSCE
T ss_pred             EE-EEEcCCCc-----EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE-EEEEEchhceEeeeecCCCCcE
Confidence            45 89988665     4455543     5678999999999    679999999999 9999999999999999888777


Q ss_pred             E-EeC
Q psy1940          75 T-LYW   78 (78)
Q Consensus        75 ~-~~w   78 (78)
                      . +.|
T Consensus       119 ~~~~~  123 (366)
T 3k26_A          119 NELKF  123 (366)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            6 443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.06  E-value=8.3e-10  Score=71.61  Aligned_cols=58  Identities=9%  Similarity=0.097  Sum_probs=48.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+++..     ......+|...|.+++|+|+|++|++++.|+. |++||++ +.....+..
T Consensus       174 v~-iwD~~~~~-----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          174 IA-VLQVTETV-----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             EE-EEEESSSE-----EEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECC
T ss_pred             EE-EEEcCCCc-----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccC
Confidence            56 89998764     55556678999999999999999999999999 9999998 655555543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1e-09  Score=76.63  Aligned_cols=44  Identities=11%  Similarity=0.269  Sum_probs=39.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      +..++.+|.++|++++||||| +||+|+.|++ |++||++++..+.
T Consensus       567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~t-v~lwd~~~~~~~~  610 (902)
T 2oaj_A          567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGS-LMLIDRRGPAIIY  610 (902)
T ss_dssp             EEEEECCCSCSEEEEEECBTS-EEEEEETTSE-EEEEETTTTEEEE
T ss_pred             eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCc-EEEEECCCCeEEE
Confidence            367888999999999999999 9999999999 9999998877664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.05  E-value=5.9e-10  Score=67.37  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +..+++.+|.++|.+++| |++++|++++.|+. |++||+.++.....+..|..++.
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~-v~vw~~~~~~~~~~~~~~~~~v~   63 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGT-VRLWSKDDQWLGTVVYTGQGFLN   63 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSE-EEEEEESSSEEEEEEEECSSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCc-EEEEECCCCEEEEEeecCCccEE
Confidence            477889999999999999 99999999999999 99999999988888888777665

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.04  E-value=2.9e-09  Score=68.06  Aligned_cols=63  Identities=27%  Similarity=0.404  Sum_probs=56.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|...|.+++|  +++.+++++.|+. |++||++++.++..+.+|..++.
T Consensus       278 i~-vwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~h~~~v~  340 (435)
T 1p22_A          278 IK-VWNTSTCE-----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEGHEELVR  340 (435)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEE
T ss_pred             EE-EEECCcCc-----EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeCCcCcEE
Confidence            56 89998775     88899999999999999  4789999999999 99999999999999998887765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.02  E-value=2e-09  Score=66.48  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=52.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe--eCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL--RRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~--~~~~~~~~   75 (78)
                      ++ +||+.+..   .+....+.+|..+|.+++|+|+|++|++++.|+. |++||+.+++....+  ..+..++.
T Consensus        32 v~-i~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~  100 (372)
T 1k8k_C           32 VH-IYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-AYVWTLKGRTWKPTLVILRINRAAR  100 (372)
T ss_dssp             EE-EEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC-EEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             EE-EEeCCCCc---EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe-EEEEECCCCeeeeeEEeecCCCcee
Confidence            45 88886542   1267788899999999999999999999999999 999999888754443  44555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.6e-09  Score=74.08  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=55.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC--CCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT--GTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d--g~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..   .+...++.+|.++|.+++|+|+  |++|++++.||. |++||+.++.  .+..+.+|..++.
T Consensus        33 I~-vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~h~~~V~  103 (753)
T 3jro_A           33 IK-IFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK-VLIWKEENGRWSQIAVHAVHSASVN  103 (753)
T ss_dssp             EE-EEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC-EEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             EE-EEecCCCC---CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe-EEEEECCCCcccccccccCCCCCeE
Confidence            45 89987432   1377888999999999999998  999999999999 9999999886  6677777777765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.01  E-value=1.2e-09  Score=67.12  Aligned_cols=65  Identities=11%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCCCc-EEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQT---GTMIATASSKGTLIRVWDTLKKV-QLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ..... .+|..+|.+++|+|+   |++|++++.|+. |++||+.++. .+..+.+|..++.
T Consensus        46 v~-iw~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~v~  115 (357)
T 3i2n_A           46 IQ-LYEIQHGD-----LKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN-LHIWNLEAPEMPVYSVKGHKEIIN  115 (357)
T ss_dssp             EE-EEEECSSS-----EEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC-EEEECTTSCSSCSEEECCCSSCEE
T ss_pred             EE-EEeCCCCc-----ccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe-EEEEeCCCCCccEEEEEecccceE
Confidence            56 89987654     33232 378999999999998   799999999999 9999999887 8888888887765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.01  E-value=3.6e-09  Score=65.86  Aligned_cols=57  Identities=25%  Similarity=0.439  Sum_probs=48.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCc-EEEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKV-QLVEL   67 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~-~~~~~   67 (78)
                      +. +||+.+..     ....+.+|.++|.+++|+|+++ .|++++.|+. |++||++++. .+..+
T Consensus       168 v~-~~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~  226 (408)
T 4a11_B          168 VQ-LCDLKSGS-----CSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITL  226 (408)
T ss_dssp             EE-EEESSSSC-----CCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEEC
T ss_pred             EE-EEeCCCcc-----eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccc
Confidence            45 89988765     8889999999999999999998 5899999999 9999998765 44444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.01  E-value=2.9e-09  Score=68.03  Aligned_cols=63  Identities=14%  Similarity=0.214  Sum_probs=52.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|.++|.+++|+  ++.+++++.|+. |++||+.+++.+..+.+|..++.
T Consensus       141 i~-vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~h~~~v~  203 (445)
T 2ovr_B          141 LK-VWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTDRT-LKVWNAETGECIHTLYGHTSTVR  203 (445)
T ss_dssp             EE-EEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCCCe-EEEEECCcCcEEEEECCCCCcEE
Confidence            45 88887665     788888999999999987  568999999998 99999999988888888877665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.00  E-value=7.6e-10  Score=70.08  Aligned_cols=64  Identities=11%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc------------CEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS------------ELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~------------~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~   70 (78)
                      +. +||+++.... ......+.+|..            +|.+++|+|+|++|++++. +. |++||+++ +.++..+..|
T Consensus       251 i~-iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          251 IR-LCDMRASALC-DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EE-EEETTTCSSS-CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESC
T ss_pred             EE-EEECcCCccc-cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeecc
Confidence            56 8999876510 112788888886            9999999999999999999 98 99999997 8888888776


Q ss_pred             C
Q psy1940          71 S   71 (78)
Q Consensus        71 ~   71 (78)
                      .
T Consensus       327 ~  327 (447)
T 3dw8_B          327 E  327 (447)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.3e-09  Score=72.60  Aligned_cols=57  Identities=14%  Similarity=0.310  Sum_probs=44.3

Q ss_pred             CcEEecCCcc-----CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc-------EEEEe----eCCCCCeE-EeC
Q psy1940          20 SPVTINAHQS-----ELACLALNQTGTMIATASSKGTLIRVWDTLKKV-------QLVEL----RRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~-----~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~-------~~~~~----~~~~~~~~-~~w   78 (78)
                      +...+. |..     .+.+++|||||++||+|+.||. |++||+.++.       .+.++    .+|.+.+. +.|
T Consensus       117 ~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt-VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw  190 (588)
T 2j04_A          117 MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE-LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW  190 (588)
T ss_dssp             EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE-EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE
T ss_pred             eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE-EEEEECCCCccccccceeeeeeecccccccccEEEEEE
Confidence            566666 765     4999999999999999999999 9999999885       36776    34444443 544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.1e-09  Score=70.34  Aligned_cols=67  Identities=18%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCCCcEEEE-eeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQT---GTMIATASSKGTLIRVWDTLKKVQLVE-LRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~~   75 (78)
                      +||+.+.... ......+.+|.+.|.+++|+|+   +++|++++.|+. |++||++++..+.. +.+|..++.
T Consensus       175 ~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~h~~~v~  245 (450)
T 2vdu_B          175 SIDINSIPEE-KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVDKWLFGHKHFVS  245 (450)
T ss_dssp             EEETTSCCCS-SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEEEECCCCSSCEE
T ss_pred             EEecCCcccc-cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceeeeeecCCCCceE
Confidence            6777765411 0033467889999999999999   999999999999 99999999988877 446666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.98  E-value=7.3e-10  Score=70.46  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=46.1

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCC-CEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTG-TMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg-~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+. |||+.+..     ....+.+|..++.+++|+|++ ++|++++.|++ |++||+++++......
T Consensus       167 tv~-~Wd~~~~~-----~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~-v~~wd~~t~~~~~~~~  226 (393)
T 4gq1_A          167 TLI-IWRLTDEG-----PILAGYPLSSPGISVQFRPSNPNQLIVGERNGN-IRIFDWTLNLSAEENS  226 (393)
T ss_dssp             EEE-EEEEETTE-----EEEEEEECSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTCCC------
T ss_pred             eEE-EEECCCCc-----eeeeecCCCCCcEEEEECCCCCceEEecCCCCE-EEEEECCCCccccccc
Confidence            356 99998765     677777899999999999987 48999999999 9999999887654443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=3.7e-09  Score=73.85  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=45.7

Q ss_pred             EEEcccCCcCCCCCcEEecCC------------------ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAH------------------QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h------------------~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      +||+++..     +.+++..|                  .+.|.+++|+|||++|++++.|+. |++||+++++++..
T Consensus       177 lWd~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          177 TYSLVENE-----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSGHMIMA  248 (902)
T ss_dssp             EEETTTTE-----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTCCEEEE
T ss_pred             EEECCCCc-----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCcEEEE
Confidence            68887654     66666655                  578999999999999999999999 99999999987754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.96  E-value=4.5e-09  Score=67.49  Aligned_cols=58  Identities=10%  Similarity=0.145  Sum_probs=50.7

Q ss_pred             eeeEEEcccCCcCCCCCcEE-ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVT-INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~-~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+.+..     .... +.+|.++|.+++|+ +|++|++++.|+. |++||+++++++..+..
T Consensus       222 i~-vwd~~~~~-----~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~  280 (450)
T 2vdu_B          222 IK-ISHYPQCF-----IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDY  280 (450)
T ss_dssp             EE-EEEESCTT-----CEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEEC
T ss_pred             EE-EEECCCCc-----eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecc
Confidence            45 89987765     6666 56899999999999 9999999999999 99999999998888863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.96  E-value=6.9e-09  Score=73.11  Aligned_cols=65  Identities=15%  Similarity=0.252  Sum_probs=58.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECC--CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQ--TGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~--dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|..+|.+++|+|  ++..+++++.|+. |++||++++.++..+.+|..+++
T Consensus       681 v~-vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~-v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          681 VK-IWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF-LKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             EE-EEETTTCC-----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC-EEEEETTSSSEEEEECCCSSCEE
T ss_pred             EE-EEECCCCc-----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe-EEEEECCCcchhheecCCCCCEE
Confidence            55 89998765     8899999999999999999  5568999999999 99999999999999998888776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.96  E-value=8.9e-10  Score=70.01  Aligned_cols=62  Identities=10%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEE----CCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLAL----NQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~f----s~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +. +||++...     +..++. .|..+|.+++|    +|++.+|++++.|+. |++||+++++++..+.++..
T Consensus       238 i~-iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~  304 (437)
T 3gre_A          238 ID-IWDIRFNV-----LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKGHCQYAFINSDE  304 (437)
T ss_dssp             EE-EEETTTTE-----EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTTEEEEEEESSSS
T ss_pred             EE-EEEcCCcc-----EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCCcEEEEEEcCCC
Confidence            56 89998765     778776 78889999955    457889999999999 99999999999999987653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.94  E-value=8.9e-09  Score=64.39  Aligned_cols=66  Identities=14%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCC---ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAH---QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h---~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+...      ....+..|   ...|.+++|+|+++.|++++.|+. |++||+ ++..+..+..|...+. +.|
T Consensus       143 i~-iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~-~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          143 TT-LRDFSGS------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR-LLLLGL-DGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             EE-EEETTSC------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE-EEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred             EE-EEECCCC------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC-EEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence            45 8998742      55556544   488999999999999999999999 999999 5778888888877765 443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.92  E-value=4.2e-09  Score=66.02  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----CcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK----KVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+....  +....+ .|...|.+++|+|+|++|++++.|+. |++||+.+    ...+..+.+|..++.
T Consensus        47 v~-iw~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~-v~vw~~~~~~~~~~~~~~~~~h~~~v~  117 (416)
T 2pm9_A           47 LE-LWSLLAADSE--KPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS-LELYSTNEANNAINSMARFSNHSSSVK  117 (416)
T ss_dssp             CE-EEESSSGGGC--SCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC-EEEECCSSTTSCCCEEEECCCSSSCCC
T ss_pred             EE-EEEccCCCCC--cEEEEE-ecCCceEEEEECCCCCeEEEEccCCe-EEEeecccccccccchhhccCCccceE
Confidence            56 8998765411  133333 58899999999999999999999999 99999987    357788888777655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.90  E-value=2e-08  Score=64.12  Aligned_cols=63  Identities=19%  Similarity=0.291  Sum_probs=46.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ...++.+|.++|.+++|  +++++++++.|+. |++||+++++.+..+.+|...+.
T Consensus       261 i~-iwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~v~  323 (445)
T 2ovr_B          261 VK-VWDPETET-----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTGHQSLTS  323 (445)
T ss_dssp             EE-EEEGGGTE-----EEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECCCCSCEE
T ss_pred             EE-EEECCCCc-----EeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcCCcccEE
Confidence            44 77776654     67777778888888887  6778888888888 88888888887777776665543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.90  E-value=1.1e-08  Score=63.95  Aligned_cols=67  Identities=16%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +. +||+.+..     ....+..|. .+.+++|+|+|+++ ++++.|+. |++||+.+++.+..+..+..+..+.|
T Consensus        14 v~-v~d~~~~~-----~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~-i~v~d~~~~~~~~~~~~~~~v~~~~~   81 (391)
T 1l0q_A           14 IS-VIDVTSNK-----VTATIPVGS-NPMGAVISPDGTKVYVANAHSND-VSIIDTATNNVIATVPAGSSPQGVAV   81 (391)
T ss_dssp             EE-EEETTTTE-----EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EE-EEECCCCe-----EEEEeecCC-CcceEEECCCCCEEEEECCCCCe-EEEEECCCCeEEEEEECCCCccceEE
Confidence            45 89987765     777787775 47999999999987 67778999 99999999999988887765544543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.89  E-value=1.2e-08  Score=62.47  Aligned_cols=67  Identities=12%  Similarity=0.026  Sum_probs=52.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeC-CCCcEEEEeeC--CCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDT-LKKVQLVELRR--GSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~-~~~~~~~~~~~--~~~~~~   75 (78)
                      +. +||+.....  ......+.+|..+|.+++|+|+++ +|++++.|+. |++||+ .++.. ..+.+  |..++.
T Consensus        35 v~-iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~-~~~~~~~~~~~v~  105 (342)
T 1yfq_A           35 LT-VYKFDIQAK--NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-ILKVDLIGSPSF-QALTNNEANLGIC  105 (342)
T ss_dssp             EE-EEEEETTTT--EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-EEEECSSSSSSE-EECBSCCCCSCEE
T ss_pred             EE-EEEeCCCCc--cccceeeeecCCceEEEEECCCCCcEEEEEcCCCe-EEEEEeccCCce-EeccccCCCCceE
Confidence            45 899876531  113556668999999999999999 9999999999 999999 77765 66676  776665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.9e-09  Score=73.63  Aligned_cols=57  Identities=26%  Similarity=0.352  Sum_probs=45.1

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeE-EeC
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ..++.+|.++|++++|+|+|++|++++.||. |++||+.  ++..+..+.+|..++. +.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~-I~vwd~~~~~~~~~~~l~~h~~~V~~l~~   61 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKT-IKIFEVEGETHKLIDTLTGHEGPVWRVDW   61 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTE-EEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCc-EEEEecCCCCCccceeccCCcCceEEEEe
Confidence            3467899999999999999999999999999 9999988  5577788888888775 443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.80  E-value=5.2e-08  Score=60.85  Aligned_cols=67  Identities=18%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEE-EcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIAT-ASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s-~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +. +||+.+..     ....+..+. .+.+++|+|+|++|+. ++.++. |++||+.+++.+..+..+..+..+.|
T Consensus        56 i~-v~d~~~~~-----~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~  123 (391)
T 1l0q_A           56 VS-IIDTATNN-----VIATVPAGS-SPQGVAVSPDGKQVYVTNMASST-LSVIDTTSNTVAGTVKTGKSPLGLAL  123 (391)
T ss_dssp             EE-EEETTTTE-----EEEEEECSS-SEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             EE-EEECCCCe-----EEEEEECCC-CccceEECCCCCEEEEEECCCCE-EEEEECCCCeEEEEEeCCCCcceEEE
Confidence            45 88887665     677776555 8999999999998854 556788 99999999999888887766655554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.80  E-value=3.5e-08  Score=62.40  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=54.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+..     ....+..|...+.+++|+|+|+.++ +++.|+. |++||+++++.+..++.+..+..+.
T Consensus       193 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~  260 (433)
T 3bws_A          193 VH-VFDLKTLA-----YKATVDLTGKWSKILLYDPIRDLVYCSNWISED-ISVIDRKTKLEIRKTDKIGLPRGLL  260 (433)
T ss_dssp             EE-EEETTTCC-----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEECCCCSEEEEEE
T ss_pred             EE-EEECCCce-----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc-EEEEECCCCcEEEEecCCCCceEEE
Confidence            45 88987655     7788888999999999999999885 5558898 9999999999888887665544444

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.80  E-value=2.2e-08  Score=67.89  Aligned_cols=67  Identities=7%  Similarity=0.028  Sum_probs=48.3

Q ss_pred             eeeEEEcccCCcCCCC--CcEEe----cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE---EEEee-CCCCC
Q psy1940           4 LQCSQDLSSTELSSSS--SPVTI----NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ---LVELR-RGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~--~~~~~----~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~---~~~~~-~~~~~   73 (78)
                      ++ +||+......+.+  ...++    .+|.+.|.+++|+|||  +++++.|++ |++||+.++..   ..+++ +|...
T Consensus       153 Vk-IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~h~~~  228 (588)
T 2j04_A          153 LQ-FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNASRRK  228 (588)
T ss_dssp             EE-EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEECCCSSC
T ss_pred             EE-EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeecccccCc
Confidence            56 8998765311111  25776    6788899999999999  888999999 99999988773   35664 45433


Q ss_pred             e
Q psy1940          74 A   74 (78)
Q Consensus        74 ~   74 (78)
                      +
T Consensus       229 V  229 (588)
T 2j04_A          229 I  229 (588)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.75  E-value=1.8e-08  Score=63.69  Aligned_cols=64  Identities=6%  Similarity=0.093  Sum_probs=52.6

Q ss_pred             eeeEEEcccCCcCCCCCcE-----EecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPV-----TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~-----~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +. +||+.+..     ...     .+.+|.+.|.+++|+|+|+.+++++.|+. |++||+++++.+..+..+...+
T Consensus       146 i~-~~d~~~g~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-v~~~d~~~~~~~~~~~~~~~~~  214 (433)
T 3bws_A          146 MD-VLDINSGQ-----TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA-VHVFDLKTLAYKATVDLTGKWS  214 (433)
T ss_dssp             EE-EEETTTCC-----EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE-EEEEETTTCCEEEEEECSSSSE
T ss_pred             EE-EEECCCCe-----EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE-EEEEECCCceEEEEEcCCCCCe
Confidence            45 88887654     444     34588999999999999999999999999 9999999999988888665444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.75  E-value=8e-08  Score=63.97  Aligned_cols=65  Identities=12%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeC--CCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDT--LKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~--~~~~~~~~~~~~~~~~~~   76 (78)
                      +. +||..+..     +..++..+.. +.+++|+|||++|++++.|+. |++||+  .+++++.+++.+..+..+
T Consensus       161 V~-v~D~~t~~-----~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~-V~v~D~~~~t~~~~~~i~~g~~p~~v  227 (543)
T 1nir_A          161 IA-LVDGDSKK-----IVKVIDTGYA-VHISRMSASGRYLLVIGRDAR-IDMIDLWAKEPTKVAEIKIGIEARSV  227 (543)
T ss_dssp             EE-EEETTTCC-----EEEEEECSTT-EEEEEECTTSCEEEEEETTSE-EEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             EE-EEECCCce-----EEEEEecCcc-cceEEECCCCCEEEEECCCCe-EEEEECcCCCCcEEEEEecCCCcceE
Confidence            45 78887765     7888874433 889999999999999999998 999999  888988888876666554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.71  E-value=1.4e-07  Score=60.59  Aligned_cols=61  Identities=10%  Similarity=0.083  Sum_probs=48.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC---CEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG---TLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~---~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +. +||+..      ...+.+.+|...+.+++|||||+.|++++.++   . |++||+.+++... +..+...
T Consensus       161 i~-i~d~~g------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~-i~~~d~~tg~~~~-l~~~~~~  224 (415)
T 2hqs_A          161 LR-VSDYDG------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSA-LVIQTLANGAVRQ-VASFPRH  224 (415)
T ss_dssp             EE-EEETTS------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCEEE-EECCSSC
T ss_pred             EE-EEcCCC------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcE-EEEEECCCCcEEE-eecCCCc
Confidence            45 788742      26778888999999999999999999999885   7 9999999988754 4444433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.56  E-value=3.9e-07  Score=57.67  Aligned_cols=63  Identities=13%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEe-eCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVEL-RRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~-~~~~~~~~~   76 (78)
                      +. +||+.+..     .+.++..+.  ..+++|+|||++|+++.. +. |.+||+.++  +.+..+ ..+..|..+
T Consensus       288 v~-viD~~t~~-----~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~t~~l~~~~~i~~~G~~P~~~  353 (361)
T 2oiz_A          288 IW-VMDTKTKQ-----RVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDISQPEPKLLRTIEGAAEASLQV  353 (361)
T ss_dssp             EE-EEETTTTE-----EEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred             EE-EEECCCCc-----EEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECCCCcceeeEEeccCCCCcEEE
Confidence            45 67877665     788888776  899999999999999887 88 999999999  999887 455555544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.49  E-value=3.1e-07  Score=54.54  Aligned_cols=58  Identities=5%  Similarity=-0.056  Sum_probs=44.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-KVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~   70 (78)
                      +. +||+.+.      ....+..|...+.+++|+|||++|++++ ++. |.+||+.+ ++.......+
T Consensus        24 i~-~~d~~~~------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~-i~~~d~~~~~~~~~~~~~~   82 (297)
T 2ojh_A           24 IE-IFNIRTR------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGL-LYRLSLAGDPSPEKVDTGF   82 (297)
T ss_dssp             EE-EEETTTT------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTE-EEEEESSSCCSCEECCCTT
T ss_pred             EE-EEeCCCC------ceeeeccCCcceEeeEECCCCCEEEEEc-CCe-EEEEeCCCCCCceEecccc
Confidence            45 7787654      3345566888999999999999999987 777 99999998 7766555444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.46  E-value=1.2e-06  Score=53.56  Aligned_cols=64  Identities=13%  Similarity=0.070  Sum_probs=48.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCcE-EEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKVQ-LVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~~-~~~~~~~~~~~~   75 (78)
                      +. +||+.+..     ....+..+..++ .++|+|||+++++++. ++. |.+||..+++. ...+..+..+..
T Consensus        22 v~-~~d~~~~~-----~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~   87 (331)
T 3u4y_A           22 IS-FFSTDTLE-----ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQT-LVQIETQLEPPKVVAIQEGQSSMA   87 (331)
T ss_dssp             EE-EEETTTCC-----EEEEEECCCCEE-EEEECSSSCEEEEEESTTCE-EEEEECSSSSCEEEEEEECSSCCC
T ss_pred             EE-EEeCcccc-----eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe-EEEEECCCCceeEEecccCCCCcc
Confidence            45 78887665     666666666666 9999999997776665 778 99999999887 777776666655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.45  E-value=1.2e-06  Score=53.48  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             EEEcccCCcCCCCC-cEEecCCccCEEEEEECCCCCEEEEEcCCC---CEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           7 SQDLSSTELSSSSS-PVTINAHQSELACLALNQTGTMIATASSKG---TLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~-~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~---~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +||+.+..     . ...+..+..+..+++|+|||++++++..++   . |.+||+.+++.+..++.+..+..+.|
T Consensus        66 ~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~~~~~~~~~  135 (331)
T 3u4y_A           66 QIETQLEP-----PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN-MQSYSFLKNKFISTIPIPYDAVGIAI  135 (331)
T ss_dssp             EEECSSSS-----CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE-EEEEETTTTEEEEEEECCTTEEEEEE
T ss_pred             EEECCCCc-----eeEEecccCCCCccceEECCCCCEEEEecCCCCccc-EEEEECCCCCeEEEEECCCCccceEE
Confidence            67776654     4 666777777776699999999999655553   7 99999999999888887766655543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.41  E-value=1.1e-06  Score=53.67  Aligned_cols=59  Identities=14%  Similarity=0.224  Sum_probs=46.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+.+..     ....+..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..++.+
T Consensus       277 v~-~~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~-v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          277 LA-KYDLKQRK-----LIKAANLD-HTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EE-EEETTTTE-----EEEEEECS-SCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEECS
T ss_pred             EE-EEECccCe-----EEEEEcCC-CCccceEECCCCCEEEEecCCCe-EEEEeccccceeeeeecC
Confidence            45 78876654     55555533 34678999999999999988998 999999999998888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.39  E-value=1.5e-06  Score=52.82  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+.+..     ....+..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..++.+
T Consensus       262 v~-~~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~-i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          262 LE-SFDLEKNA-----SIKRVPLP-HSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EE-EEETTTTE-----EEEEEECS-SCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEEECG
T ss_pred             EE-EEECCCCc-----CcceecCC-CceeeEEECCCCCEEEEEcCCCc-EEEEECcCCcEEEEEEcC
Confidence            45 78876654     55555543 45688999999999999999999 999999999998888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.30  E-value=5.7e-06  Score=50.17  Aligned_cols=66  Identities=15%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+..    .....+..+...+.+++|+|||++++++  ++. |.+||+.+++.+..+..+..+..+.
T Consensus       221 v~-~~d~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~~~~~~~  286 (337)
T 1pby_B          221 LL-TMDLETGE----MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKNASIKRVPLPHSYYSVN  286 (337)
T ss_dssp             EE-EEETTTCC----EEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             eE-EEeCCCCC----ceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCCcCcceecCCCceeeEE
Confidence            44 67776553    1133345566778899999999999988  688 9999999998888877655554443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.24  E-value=1e-05  Score=51.93  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=44.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEE-EEcCCC--CEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIA-TASSKG--TLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~--~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +. +||+.+..      ...+..|.+.+.+++|+|||+.|+ +++.++  . |.+||+++++. ..+..+...
T Consensus       205 i~-~~d~~tg~------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~-i~~~d~~~~~~-~~l~~~~~~  268 (415)
T 2hqs_A          205 LV-IQTLANGA------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN-LYVMDLASGQI-RQVTDGRSN  268 (415)
T ss_dssp             EE-EEETTTCC------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCE-EECCCCSSC
T ss_pred             EE-EEECCCCc------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCce-EEEEECCCCCE-EeCcCCCCc
Confidence            45 78887653      345677888999999999999888 666554  5 88889988876 445444433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.23  E-value=8.6e-06  Score=53.75  Aligned_cols=56  Identities=11%  Similarity=0.086  Sum_probs=45.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC--CEEEEeeCCCCcEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG--TLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~--~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +||+...      ....+..|.+.+.+++|||||+.|++++.++  . |.+||+.++... .+..+
T Consensus       179 ~~d~~~g------~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~~  236 (582)
T 3o4h_A          179 TSNLSSG------GLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLELP  236 (582)
T ss_dssp             EEETTTC------CCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCCS
T ss_pred             EEcCCCC------CceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccCC
Confidence            5666543      4457788888999999999999999888888  7 999999988876 55544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.20  E-value=1.1e-05  Score=56.79  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      ....+.+|...+..++|||||+.|++++.++. +++||+.+++.......+...
T Consensus       370 ~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          370 KAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             CEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSSC
T ss_pred             CceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccCCCCC
Confidence            34455578889999999999999999999999 999999999887777555444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.20  E-value=2.9e-06  Score=59.75  Aligned_cols=60  Identities=13%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCC----------CEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKG----------TLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~----------~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      +. +||+.+..     ....+.+|.+.+.+++|||||++|++++.++          . |.+||+.+++ +..+..+.
T Consensus       402 v~-~~d~~tg~-----~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~-i~l~d~~~g~-~~~l~~~~  471 (1045)
T 1k32_A          402 IM-TVDLETGK-----PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA-IHVYDMEGRK-IFAATTEN  471 (1045)
T ss_dssp             EE-EEETTTCC-----EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE-EEEEETTTTE-EEECSCSS
T ss_pred             EE-EEECCCCc-----eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCe-EEEEECCCCc-EEEeeCCC
Confidence            45 78887654     5556668999999999999999999887654          7 9999999887 45554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.14  E-value=1.3e-05  Score=48.66  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=45.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEe--eCCCC--cEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVW--DTLKK--VQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~--d~~~~--~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.... +..+....+..+.. +.+++|+|+|++|++++ .++. +.+|  |..++  +.+..++.+..|..++
T Consensus       255 i~-v~d~~~~~-~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~-v~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          255 IT-VFSVSEDG-SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             EE-EEEECTTS-CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             EE-EEEEcCCC-CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe-EEEEEEcCCCceeeEccccccCCCCeeEE
Confidence            44 78876321 11124444555544 78899999999888887 5788 9999  55566  3456666666676654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.13  E-value=1e-05  Score=49.50  Aligned_cols=57  Identities=19%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +||+.+..     ....+..+...+.+++|+|||+.|++++.++. +.+||..+++.+..+..
T Consensus       168 ~~d~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~~~~~~~~~~~~  224 (353)
T 3vgz_A          168 VVDGGNIK-----LKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDTADNKILSRKKL  224 (353)
T ss_dssp             EEETTTTE-----EEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCc-----eEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEECCCCeEEEEEEc
Confidence            67766554     66667656666889999999999999999999 99999999988877764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.11  E-value=2.5e-05  Score=47.75  Aligned_cols=58  Identities=10%  Similarity=0.050  Sum_probs=44.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccC---------EEEEEECCCCCEEEEEc--CCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSE---------LACLALNQTGTMIATAS--SKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~---------i~~v~fs~dg~~l~s~~--~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. +||..+..     ....+..+...         +.+++|+|+|+.+++++  .++. |.+||..+++.+..++
T Consensus       113 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-i~~~d~~~~~~~~~~~  181 (353)
T 3vgz_A          113 VT-AIDAKTGE-----VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV-IWVVDGGNIKLKTAIQ  181 (353)
T ss_dssp             EE-EEETTTCC-----EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE-EEEEETTTTEEEEEEC
T ss_pred             EE-EEeCCCCe-----eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce-EEEEcCCCCceEEEec
Confidence            44 67776654     56666654322         68899999999888776  4788 9999999999888887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.09  E-value=7.3e-06  Score=54.98  Aligned_cols=53  Identities=8%  Similarity=0.014  Sum_probs=41.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCCCCEEEEEcCC---------CCEEEEeeCCCCcE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQTGTMIATASSK---------GTLIRVWDTLKKVQ   63 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~dg~~l~s~~~d---------~~~i~i~d~~~~~~   63 (78)
                      +. +||+.+..     ....+..|..   .|.+++|||||++|++++.+         +. +.+||+.++..
T Consensus        39 i~-~~d~~~g~-----~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~-i~~~d~~~~~~  103 (723)
T 1xfd_A           39 VR-LWNVETNT-----STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY-YVLSKIPHGDP  103 (723)
T ss_dssp             EE-EBCGGGCC-----CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE-EEEEESSSCCC
T ss_pred             EE-EEECCCCc-----EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee-EEEEECCCCce
Confidence            45 78887665     6666776664   48999999999999999775         66 88999998875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.08  E-value=2e-05  Score=46.58  Aligned_cols=60  Identities=8%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCC-CCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTL-KKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~-~~~~~~~~~~~~   71 (78)
                      +|++....    .....+..|...+.+++|+|+|+.|+.++ .++. +++|++. .+..+..+..+.
T Consensus       155 l~~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          155 IYSMDIDS----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             EEEEETTT----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCCCS
T ss_pred             EEEEECCC----CcceEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEecCC
Confidence            67764332    25566777888999999999999888765 5888 9999876 455555555443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.08  E-value=3.5e-05  Score=51.89  Aligned_cols=65  Identities=15%  Similarity=0.266  Sum_probs=50.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC--CCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL--KKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~--~~~~~~~~~~~~~~~~~   76 (78)
                      +. ++|..+..     .+.++... ..+..++|||||+++++++.|+. |.+||+.  +++.+.+++.+..|..+
T Consensus       179 V~-viD~~t~~-----v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~-V~viD~~~~t~~~v~~i~~G~~P~~i  245 (567)
T 1qks_A          179 IA-LIDGSTYE-----IKTVLDTG-YAVHISRLSASGRYLFVIGRDGK-VNMIDLWMKEPTTVAEIKIGSEARSI  245 (567)
T ss_dssp             EE-EEETTTCC-----EEEEEECS-SCEEEEEECTTSCEEEEEETTSE-EEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             EE-EEECCCCe-----EEEEEeCC-CCccceEECCCCCEEEEEcCCCe-EEEEECCCCCCcEeEEEecCCCCcee
Confidence            45 67776654     66677643 35678999999999999999999 9999996  78888888877666554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.07  E-value=2.4e-05  Score=47.49  Aligned_cols=69  Identities=3%  Similarity=-0.007  Sum_probs=45.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEeeCC--CCc--EEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVWDTL--KKV--QLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~d~~--~~~--~~~~~~~~~~~~~~~   77 (78)
                      ++ +||+....  ..+....+ .|...+.+++|+|+|++|++++.+ +. |.+||+.  ++.  .+..+..+..+..+.
T Consensus        17 v~-~~~~~~~~--~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (343)
T 1ri6_A           17 IH-VWNLNHEG--ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFR-VLAYRIAPDDGALTFAAESALPGSLTHIS   90 (343)
T ss_dssp             EE-EEEECTTS--CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred             EE-EEEECCCC--cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCe-EEEEEecCCCCceeeccccccCCCCcEEE
Confidence            45 78875321  11123333 466778899999999999988887 88 9999987  554  445555444444444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.02  E-value=3.1e-05  Score=51.56  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=46.4

Q ss_pred             eeeEEEc--ccCCcCCCCCcEEecCCccCEEEEEECC----CCCEEEEEcC-CCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDL--SSTELSSSSSPVTINAHQSELACLALNQ----TGTMIATASS-KGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~--~~~~~~~~~~~~~~~~h~~~i~~v~fs~----dg~~l~s~~~-d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+  .+..     ...++.. ...+..++|+|    ||++|+++.. +++ |.+||..+++++..++.
T Consensus       202 V~-v~D~~~~t~~-----~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~-v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          202 ID-MIDLWAKEPT-----KVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQ-FAIMDGETLEPKQIVST  266 (543)
T ss_dssp             EE-EEETTSSSCE-----EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSE-EEEEETTTCCEEEEEEC
T ss_pred             EE-EEECcCCCCc-----EEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCe-EEEEeccccccceeecc
Confidence            45 8898  4443     6777774 44568999999    9999999885 788 99999999999888864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.95  E-value=3.2e-05  Score=47.64  Aligned_cols=55  Identities=7%  Similarity=0.039  Sum_probs=39.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC-CCEEEEe--eCCCCcEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK-GTLIRVW--DTLKKVQL   64 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d-~~~i~i~--d~~~~~~~   64 (78)
                      +||+....  ..+....+..+...+..++|+|||++|++++.+ +. +.+|  |..+|+..
T Consensus       266 v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          266 VFAVTADG--HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN-ATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEECGGG--CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEE
T ss_pred             EEEECCCC--cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc-EEEEEEeCCCCeEE
Confidence            78876321  113555666666678899999999988888765 77 9999  66667644

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.90  E-value=5.1e-05  Score=51.11  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +. +||+.....   .....+..|...+..++|||||++|+.++. +. |.+||+.++........+
T Consensus       131 i~-~~d~~~~~~---~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~-i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          131 LY-LYDLKQEGK---AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RN-LWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             EE-EEESSSCST---TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TE-EEEEETTTTEEEECCCCC
T ss_pred             EE-EEECCCCCc---ceEEEcccCCcccccccCCCCCCEEEEEeC-Cc-EEEEecCCCCEEEeccCC
Confidence            44 778765410   023446677888999999999999999874 57 999999988766554433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.89  E-value=5.3e-06  Score=55.85  Aligned_cols=53  Identities=9%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc---CEEEEEECCCCCEEEEEcC---------CCCEEEEeeCCCCcE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS---ELACLALNQTGTMIATASS---------KGTLIRVWDTLKKVQ   63 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~---~i~~v~fs~dg~~l~s~~~---------d~~~i~i~d~~~~~~   63 (78)
                      +. +||+..+.     ....+..|..   .+.+++|||||++|+.++.         ++. |++||+.+++.
T Consensus        38 i~-~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~-i~~~d~~~g~~  102 (719)
T 1z68_A           38 IV-LYNIETGQ-----SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT-YYIYDLSNGEF  102 (719)
T ss_dssp             EE-EEESSSCC-----EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTTEE
T ss_pred             EE-EEEcCCCc-----EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceE-EEEEECCCCcc
Confidence            44 77876654     5555555543   3889999999999998876         688 99999998876

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.89  E-value=0.0001  Score=44.85  Aligned_cols=59  Identities=10%  Similarity=-0.068  Sum_probs=43.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCc-cCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQ-SELACLALNQTGTMIA-TASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~-~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+.+..     ....+..+. ..+..++|+|||+.++ +...++. |.+||+.+++.+..+..
T Consensus        23 v~-~~d~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~-i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           23 LH-VVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-IYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             EE-EEETTTTE-----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEES
T ss_pred             EE-EEECCCCc-----EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc-EEEEeCCCCcEEEEEEc
Confidence            45 78877654     666666443 2567899999998665 5567888 99999999988877764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.88  E-value=4.7e-05  Score=47.21  Aligned_cols=50  Identities=8%  Similarity=0.145  Sum_probs=33.6

Q ss_pred             CccCEEEEEECCCCCEEEEEcCC--CCEEEEeeCC--CCc--EEEEeeCCCCCeEEe
Q psy1940          27 HQSELACLALNQTGTMIATASSK--GTLIRVWDTL--KKV--QLVELRRGSDPATLY   77 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d--~~~i~i~d~~--~~~--~~~~~~~~~~~~~~~   77 (78)
                      +......++|+|||++|+++..+  +. |.+|++.  ++.  .+..+..+..+..+.
T Consensus       257 ~~~~~~~i~~spdg~~l~v~~~~~~~~-i~v~~~~~~~g~~~~~~~~~~g~~~~~~~  312 (361)
T 3scy_A          257 NAQGSGDIHLSPDGKYLYASNRLKADG-VAIFKVDETNGTLTKVGYQLTGIHPRNFI  312 (361)
T ss_dssp             CCCCEEEEEECTTSSEEEEEECSSSCE-EEEEEECTTTCCEEEEEEEECSSCCCEEE
T ss_pred             CCCCcccEEECCCCCEEEEECCCCCCE-EEEEEEcCCCCcEEEeeEecCCCCCceEE
Confidence            34556899999999999776655  77 9999985  444  444454433444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.86  E-value=1.7e-05  Score=53.43  Aligned_cols=30  Identities=7%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      .+.+++|||||++|++++. +. |.+||+.++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~-i~~~d~~~~  139 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GE-LYLYDLKQE  139 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TE-EEEEESSSC
T ss_pred             CcceeEECCCCCEEEEEeC-Cc-EEEEECCCC
Confidence            3788999999999999886 77 999999887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.85  E-value=4.8e-05  Score=48.05  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +||..+..     ...++..+..+  .++|+|||++++++.          .++. |.+||+.+++.+.+++
T Consensus        35 v~D~~t~~-----~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~-v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           35 VYDYTNGK-----FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV-VEVWDADKLTFEKEIS   98 (361)
T ss_dssp             EEETTTCC-----EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE-EEEEETTTCCEEEEEE
T ss_pred             EEECCCCe-----EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCE-EEEEECcCCcEEEEEE
Confidence            67765554     66778777666  899999999999986          3677 9999999998888776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.80  E-value=6.2e-05  Score=50.51  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=42.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCC------ccCEEEEEECCCCCEEEEEcC----CCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAH------QSELACLALNQTGTMIATASS----KGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h------~~~i~~v~fs~dg~~l~s~~~----d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. +||+....     ....+..+      ...+.+++|||||+.|++.+.    +.. |.+||+.+++....+.
T Consensus       230 l~-~~d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~  297 (723)
T 1xfd_A          230 LH-VIGLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHE  297 (723)
T ss_dssp             EE-EEESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEE
T ss_pred             EE-EEECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEE
Confidence            55 78876654     44555544      667899999999998877643    246 9999999988766554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.79  E-value=5.2e-05  Score=47.14  Aligned_cols=49  Identities=6%  Similarity=-0.105  Sum_probs=37.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ..+...++...+...+|+|||+.|+.++.++. +.+||+.+++.......
T Consensus        72 ~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~-l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           72 ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN-LMRVDLATLEENVVYQV  120 (388)
T ss_dssp             EEECCCSSCBCSSSCEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEEC
T ss_pred             eEEeeeCCCCCccceEEcCCCCEEEEEeCCCe-EEEEECCCCcceeeeec
Confidence            33334455555556789999999999999998 99999999876655443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.74  E-value=0.00026  Score=45.13  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=45.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEE-eeCCCCCeE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVE-LRRGSDPAT   75 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~-~~~~~~~~~   75 (78)
                      ++|+.+..     .+.++.... ....++|+|||+ .++++. .++. |.++|+.+++.+.. ..-+..|..
T Consensus       302 VID~~t~~-----vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~-V~ViD~~t~~vv~~i~~vG~~P~~  366 (373)
T 2mad_H          302 SVTGLVGQ-----TSSQISLGH-DVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EEECCCCE-----EEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCe-EEEEECCCCCEEeeecCCCCCCcE
Confidence            45665543     666665332 468999999999 788877 4888 99999999999988 455555544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.73  E-value=2.4e-05  Score=52.49  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=42.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC-----CcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK-----KVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~-----~~~~~~~~~   69 (78)
                      +. +||+.+.      ....+..+...+.+++|||||+.|+++ .++. |.+||+.+     +........
T Consensus       103 i~-~~d~~~~------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~-i~v~~~~~~~~~~g~~~~~~~~  164 (706)
T 2z3z_A          103 LV-GFDMLAR------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHN-LYIARGGKLGEGMSRAIAVTID  164 (706)
T ss_dssp             EE-EEETTTT------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTE-EEEEECBCTTSCCCCCEESCSC
T ss_pred             EE-EEECCCC------ceEEccCCcccccCCcCCCCCCEEEEE-ECCe-EEEEecCcccccCCCcEEeccC
Confidence            44 7887654      334455567778899999999999985 6788 99999988     766554443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.71  E-value=8.8e-05  Score=48.09  Aligned_cols=49  Identities=8%  Similarity=0.140  Sum_probs=37.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE--EEEe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ--LVEL   67 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~--~~~~   67 (78)
                      +||+.+..     ..    .+...|.|++|||+|  ++.+..||. +++|+...+..  ..++
T Consensus       150 v~dl~~~~-----~~----~~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~~~~~k~~I  200 (388)
T 1xip_A          150 ALDLRTKS-----TK----QLAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNGEMEKQFEF  200 (388)
T ss_dssp             EEETTTCC-----EE----EEEESEEEEEECSSE--EEEEETTSC-EEEEEEETTEEEEEEEE
T ss_pred             EEEccCCc-----cc----cccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCcccccccee
Confidence            77877554     22    145689999999999  678899999 99998887775  4556

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.68  E-value=3e-05  Score=51.19  Aligned_cols=38  Identities=11%  Similarity=-0.004  Sum_probs=31.9

Q ss_pred             CccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCcEEE
Q psy1940          27 HQSELACLALNQTGTMIATASS-KGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~~~~   65 (78)
                      +..+|++++|+|||+.||+++. |++ ++||++.++....
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~-~~lw~~~~g~~~~   58 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGS-VNAYLYDGGETVK   58 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTE-EEEEEEETTEEEE
T ss_pred             hccchheeecCCCCCeEEEEEccCCc-eeEEEEcCCCcEe
Confidence            3568999999999999999887 998 9999986665543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.68  E-value=0.00013  Score=45.26  Aligned_cols=71  Identities=10%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEe--eCCCCcEEEEee--CCCCCeEEeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVW--DTLKKVQLVELR--RGSDPATLYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~--d~~~~~~~~~~~--~~~~~~~~~w   78 (78)
                      +. +|++.... +..+....+.. ...+..++|+|||++|+++. .++. |.+|  |..+|+......  ....|..+.|
T Consensus       284 i~-v~~~~~~~-g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~-v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          284 VA-IFKVDETN-GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV-IQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EE-EEEECTTT-CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE-EEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             EE-EEEEcCCC-CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC-EEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            44 77775221 11113334444 45678999999999888887 5677 9995  566776644332  2235565654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.67  E-value=7.8e-05  Score=50.04  Aligned_cols=36  Identities=8%  Similarity=-0.002  Sum_probs=29.0

Q ss_pred             EEEEEECCCCCEEEEEc---------------------------------CCCCEEEEeeCCCCcEEEEe
Q psy1940          31 LACLALNQTGTMIATAS---------------------------------SKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~---------------------------------~d~~~i~i~d~~~~~~~~~~   67 (78)
                      +.+++|||||++|++++                                 .+.. |.+||+.++......
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~-l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT-VGIYHLATGKTVYLQ  251 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE-EEEEETTTTEEEECC
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE-EEEEECCCCceEeec
Confidence            47899999999999987                                 4466 999999988764433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.62  E-value=0.00072  Score=42.27  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=29.4

Q ss_pred             CccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCC-CCcE
Q psy1940          27 HQSELACLALNQTGTMIATASS-KGTLIRVWDTL-KKVQ   63 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~-~~~~   63 (78)
                      +...+.+++|+|||++|+++.. ++. |.+||+. +++.
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~-v~~~~~~~~g~~  180 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANK-LWTHRKLASGEV  180 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCE-EEEEEECCCCCE
Confidence            5567899999999998887754 567 9999998 6754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.61  E-value=0.0002  Score=45.98  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=48.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      ++|+.+..     .+.++.... ....++|+|||+ .+++.. .++. |.++|+.+++.+..++-+..|-.+
T Consensus       298 ViD~~t~~-----vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg~~P~~i  362 (368)
T 1mda_H          298 SVTASVGQ-----TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDKGPESL  362 (368)
T ss_dssp             EEESSSCC-----EEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCSCCCEE
T ss_pred             EEECCCCe-----EEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECCCCCCEE
Confidence            66766654     566665443 468899999998 566666 5898 999999999999999977777554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.61  E-value=0.0001  Score=45.40  Aligned_cols=49  Identities=18%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~   59 (78)
                      +||+....   .+.+..+..+...+..++|+|||++|++++ .++. +.+||+.
T Consensus        67 ~~~~~~g~---~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~-v~v~~~~  116 (347)
T 3hfq_A           67 AWQIDGQT---AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT-AEVMKIA  116 (347)
T ss_dssp             EEEEETTE---EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE-EEEEEEC
T ss_pred             EEEecCCc---EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE-EEEEEeC
Confidence            77874332   113444445677788999999999888887 6788 9999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.51  E-value=0.0006  Score=44.23  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      ++|+.+..     .++.+... .++++++|++||+ .|++. ..++. |.++|..+++.+..++....|..|.
T Consensus       315 viD~~t~k-----v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~-VsViD~~t~k~~~~i~~~~~p~~l~  380 (386)
T 3sjl_D          315 VLDAKTGE-----RLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGEELRSVNQLGHGPQVI  380 (386)
T ss_dssp             EEETTTCC-----EEEEEEEE-EEECEEEECSSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             EEECCCCe-----EEEEEECC-CCcceEEECCCCCeEEEEEcCCCCe-EEEEECCCCcEEEEecCCCCCceeE
Confidence            45665554     66666532 3678999999997 66664 56888 9999999999999998777766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.41  E-value=0.00024  Score=47.86  Aligned_cols=36  Identities=11%  Similarity=0.100  Sum_probs=30.0

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE   66 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~   66 (78)
                      ..+..++|||||+.|+.+. ++. |++||+.++.....
T Consensus       110 ~~~~~~~~SPDG~~la~~~-~~~-i~~~~~~~g~~~~l  145 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY-QNN-IYLKQRPGDPPFQI  145 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE-TTE-EEEESSTTSCCEEC
T ss_pred             cccccceECCCCCEEEEEE-CCe-EEEEeCCCCCcEEE
Confidence            4578899999999999986 677 99999988876543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.39  E-value=0.0004  Score=44.61  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=44.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++|..+..     .+.++.....+  .++|+|||++++.+.          .++. |.++|+.+++.+.+++-
T Consensus        50 vID~~t~~-----v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~-VsviD~~T~~vv~~I~v  114 (368)
T 1mda_H           50 VSCAGCGV-----TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY-VEVFDPVTFLPIADIEL  114 (368)
T ss_dssp             EEETTTTE-----EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE-EEEECTTTCCEEEEEEE
T ss_pred             EEECCCCe-----EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCE-EEEEECCCCCEEEEEEC
Confidence            66766655     77888755556  699999999999885          3677 99999999999988864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.38  E-value=0.0012  Score=40.97  Aligned_cols=58  Identities=7%  Similarity=-0.081  Sum_probs=42.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++|..+..     ...++.. ......++++++|+..++...++. |.++|..+++....++.+.
T Consensus        68 viD~~t~~-----~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~-v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A           68 AIDINTFK-----EVGRITG-FTSPRYIHFLSDEKAYVTQIWDYR-IFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             EEETTTCC-----EEEEEEC-CSSEEEEEEEETTEEEEEEBSCSE-EEEEETTTTEEEEEEECTT
T ss_pred             EEECcccE-----EEEEcCC-CCCCcEEEEeCCCeEEEEECCCCe-EEEEECCCCeEEEEEEcCC
Confidence            67776554     6666653 456788999999955555447888 9999999999888777555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.37  E-value=0.0017  Score=41.42  Aligned_cols=58  Identities=16%  Similarity=0.117  Sum_probs=43.4

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+. ++|..+..     ...+++....+  .++|||||++++.+.          .++. |.++|..+.+.+..++-
T Consensus        48 ~v~-v~D~~t~~-----~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~-v~viD~~t~~~~~~i~~  115 (373)
T 2mad_H           48 QQW-VLDAGSGS-----ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY-VEVFDPVTFLPIADIEL  115 (373)
T ss_pred             EEE-EEECCCCe-----EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCe-EEEEECCCCcEEEEEEC
Confidence            345 77776554     66677655555  899999999999885          3677 99999998888777653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.35  E-value=0.00037  Score=47.52  Aligned_cols=51  Identities=14%  Similarity=0.036  Sum_probs=39.5

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      +||+.+..      ...+..|.+.+...+|||||+.||.++ ++. |.+||+.++...+
T Consensus        96 ~~d~~~~~------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~-i~~~~~~~~~~~~  146 (740)
T 4a5s_A           96 IYDLNKRQ------LITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYR  146 (740)
T ss_dssp             EEETTTTE------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEE
T ss_pred             EEECCCCc------EEEcccCCCcceeeEECCCCCEEEEEE-CCe-EEEEECCCCceEE
Confidence            67776653      233566778899999999999999885 677 9999998876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.34  E-value=0.00028  Score=43.82  Aligned_cols=52  Identities=8%  Similarity=0.072  Sum_probs=38.0

Q ss_pred             CCcEEecCCccCEEE-----EEECCCCCEEEEEcC-CC--CEEEEeeCCCCcEEEEeeCCC
Q psy1940          19 SSPVTINAHQSELAC-----LALNQTGTMIATASS-KG--TLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~-----v~fs~dg~~l~s~~~-d~--~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      .....+..|......     .+|||||++|+.++. ++  . |.+||+.+++......++.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~-l~~~d~~~g~~~~lt~~~~   80 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWN-YYLLDLNTQVATQLTEGRG   80 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE-EEEEETTTCEEEECCCSSC
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCce-EEEEeCCCCceEEeeeCCC
Confidence            366777777666655     789999999998887 66  4 6677988887766555443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.32  E-value=0.0017  Score=42.60  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC-EEEEEc-CCCCEEEEeeCCCCcEEEEe-eCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT-MIATAS-SKGTLIRVWDTLKKVQLVEL-RRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~-~l~s~~-~d~~~i~i~d~~~~~~~~~~-~~~~~~~   74 (78)
                      +. ++|+.+..     .+.++.... ....++|+|||+ ++++.. .++. |.++|+.+++.+..+ .-+..|.
T Consensus       352 Vs-VID~~T~k-----vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~-VsVID~~t~kvv~tI~~vG~~P~  417 (426)
T 3c75_H          352 VV-VLNAETGE-----RINKIELGH-EIDSINVSQDAEPLLYALSAGTQT-LHIYDAATGEELRSVDQLGRGPQ  417 (426)
T ss_dssp             EE-EEETTTCC-----EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCSSSCC
T ss_pred             EE-EEECCCCe-----EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCe-EEEEECCCCCEEEEecCCCCCCc
Confidence            45 66766664     667775332 467899999999 888887 5888 999999999999987 4444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.27  E-value=0.0011  Score=40.59  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             EEEEEECCCCCEEEEEcCC---------------------------CCEEEEeeCCCCcEEEEe
Q psy1940          31 LACLALNQTGTMIATASSK---------------------------GTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d---------------------------~~~i~i~d~~~~~~~~~~   67 (78)
                      +..++|+|||+.|+.++.+                           .. |.+||+.+++.+..+
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~l  168 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT-FWIFDTESEEVIEEF  168 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEE-EEEEETTTTEEEEEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce-EEEEECCCCeEEeee
Confidence            8999999999999887632                           45 888999888763333

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.25  E-value=0.00037  Score=47.25  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCC-----CEEEEeeCCCCcEEEE
Q psy1940          27 HQSELACLALNQTGTMIATASSKG-----TLIRVWDTLKKVQLVE   66 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~-----~~i~i~d~~~~~~~~~   66 (78)
                      |...+..++|||||++|+.++.++     . |++||+.+++.+..
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~-i~v~d~~tg~~~~~  166 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVT-IKFMKVDGAKELPD  166 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEE-EEEEETTTTEEEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEE-EEEEECCCCCCCcc
Confidence            334678899999999998765543     6 99999999987653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.24  E-value=0.001  Score=44.34  Aligned_cols=43  Identities=12%  Similarity=0.136  Sum_probs=31.0

Q ss_pred             ecCCccCEEEEEECCCCCEEEEEcCCCC-EEEEeeCCCCcEEEE
Q psy1940          24 INAHQSELACLALNQTGTMIATASSKGT-LIRVWDTLKKVQLVE   66 (78)
Q Consensus        24 ~~~h~~~i~~v~fs~dg~~l~s~~~d~~-~i~i~d~~~~~~~~~   66 (78)
                      ..+|...+..++|+|||+.+++++.++. .|.+||+.++.....
T Consensus       237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l  280 (662)
T 3azo_A          237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL  280 (662)
T ss_dssp             EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES
T ss_pred             CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec
Confidence            3456788999999999998888888884 055566656655433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.21  E-value=0.00086  Score=43.51  Aligned_cols=54  Identities=17%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ++|..+..     .+.++.....+ . +++||||++++.+.          .++. |.+||..+++.+.+++
T Consensus        63 ViD~~t~~-----v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~-VsviD~~t~~v~~~I~  126 (386)
T 3sjl_D           63 VIDGEAGR-----VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDY-VEVFDPVTLLPTADIE  126 (386)
T ss_dssp             EEETTTTE-----EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTCCEEEEEE
T ss_pred             EEECCCCe-----EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCE-EEEEECCCCeEEEEEE
Confidence            56666554     67777755555 5 99999999988775          3567 9999999999888875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.15  E-value=0.0023  Score=39.06  Aligned_cols=57  Identities=11%  Similarity=0.074  Sum_probs=44.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCc-cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQ-SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~-~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++ +||..+++     .+-.+..+. ..++++.++|+|+.++  +.++. |..||. +|+.+.++..+
T Consensus        17 v~-~~d~~tG~-----~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~-V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A           17 IA-IINKDTKE-----IVWEYPLEKGWECNSVAATKAGEILF--SYSKG-AKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             EE-EEETTTTE-----EEEEEECCTTCCCCEEEECTTSCEEE--ECBSE-EEEECT-TSCEEEEEECC
T ss_pred             EE-EEECCCCe-----EEEEeCCCccCCCcCeEECCCCCEEE--eCCCC-EEEECC-CCCEEEEEcCC
Confidence            46 78876665     777777765 4789999999999888  34677 999998 89888888754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.13  E-value=0.0019  Score=39.48  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=28.4

Q ss_pred             cCEEEEEECCCCCEEEEEcCC---C--CEEEEeeCCCCcEEEEee
Q psy1940          29 SELACLALNQTGTMIATASSK---G--TLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d---~--~~i~i~d~~~~~~~~~~~   68 (78)
                      ..+..++|||||+.|+..+.+   +  . |.++|+.+++......
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~-l~~~~~~~g~~~~l~~  102 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSE-IWVADLETLSSKKILE  102 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEE-EEEEETTTTEEEEEEE
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcce-EEEEECCCCceEEEEc
Confidence            457789999999999987653   2  4 6677888776654444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.12  E-value=0.00036  Score=46.51  Aligned_cols=40  Identities=8%  Similarity=-0.103  Sum_probs=32.5

Q ss_pred             CcEEecC-----CccCEEEEEECCCCCEEEEEcCC----------CCEEEEeeCCC
Q psy1940          20 SPVTINA-----HQSELACLALNQTGTMIATASSK----------GTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~~-----h~~~i~~v~fs~dg~~l~s~~~d----------~~~i~i~d~~~   60 (78)
                      ....+..     |...+.+++|||||+.|+.++.+          .. |.+||+.+
T Consensus       116 ~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~-i~~~~~~~  170 (662)
T 3azo_A          116 VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF-LAAVPLDG  170 (662)
T ss_dssp             CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE-EEEEETTS
T ss_pred             CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE-EEEEECCC
Confidence            4455555     66778899999999999998877          46 99999987

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.12  E-value=0.00099  Score=41.21  Aligned_cols=35  Identities=6%  Similarity=-0.163  Sum_probs=29.6

Q ss_pred             EEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          33 CLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        33 ~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.|+|||+.|+.++.++. +.+||+.+++......
T Consensus        85 ~~~~spdg~~l~~~~~~~~-l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELN-LMKVDLETLEEQVIYT  119 (396)
T ss_dssp             TCEECTTSSEEEEEETTTE-EEEEETTTCCEEEEEE
T ss_pred             cceECCCCCEEEEEEcCCc-EEEEECCCCCcEEEEe
Confidence            4789999999999999998 9999999887655544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.11  E-value=0.00019  Score=48.59  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             CCccCEEEEEECCCCCEEE-----EEcCCCCEEEEeeCCCCcEE
Q psy1940          26 AHQSELACLALNQTGTMIA-----TASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~-----s~~~d~~~i~i~d~~~~~~~   64 (78)
                      +|...+.+++|||||++|+     .++++.. |++||+.+++.+
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~-i~v~dl~tg~~~  160 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAV-LHVIDVDSGEWS  160 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCE-EEEEETTTCCBC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEE-EEEEECCCCCCc
Confidence            3555688999999999998     4455567 999999998764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.08  E-value=0.004  Score=37.93  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=37.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEe
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVEL   67 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~   67 (78)
                      ....+..+...+.+++|+|+|+.++++..++. |.+||..+++.....
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGN-IFKINPETKEIKRPF   82 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCE-EEEEeCCCCcEEEEe
Confidence            34455666667789999999998888888998 999999888765443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.08  E-value=0.0025  Score=41.31  Aligned_cols=53  Identities=17%  Similarity=0.094  Sum_probs=40.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      ++ +||+.+..     .......|+.++.++.+.+.  .+++++.||. +.+||+.++....
T Consensus       108 l~-v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~-L~v~dl~~~~~~~  160 (388)
T 1xip_A          108 LY-SLDLEELS-----EFRTVTSFEKPVFQLKNVNN--TLVILNSVND-LSALDLRTKSTKQ  160 (388)
T ss_dssp             EE-EEESSSTT-----CEEEEEECSSCEEEEEECSS--EEEEEETTSE-EEEEETTTCCEEE
T ss_pred             EE-EEEchhhh-----ccCccceeecceeeEEecCC--CEEEEECCCC-EEEEEccCCcccc
Confidence            46 88988775     44455677778888888754  3888999999 9999999877643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.06  E-value=0.00025  Score=48.39  Aligned_cols=54  Identities=11%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccC-----EEEEEECCCCCEEEEEcCC---------CCEEEEeeCCCCcEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSE-----LACLALNQTGTMIATASSK---------GTLIRVWDTLKKVQL   64 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~-----i~~v~fs~dg~~l~s~~~d---------~~~i~i~d~~~~~~~   64 (78)
                      +. +||+.++.     +...+.+|...     ...++|||||++|+.++.+         +. +.+||+.+++..
T Consensus        38 i~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~-~~~~d~~~~~~~  105 (740)
T 4a5s_A           38 IL-VFNAEYGN-----SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDIYDLNKRQLI  105 (740)
T ss_dssp             EE-EEETTTCC-----EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTTEEC
T ss_pred             EE-EEECCCCc-----eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE-EEEEECCCCcEE
Confidence            45 78887765     56667776543     2347899999999998876         44 669999988754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.05  E-value=0.0014  Score=42.96  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=44.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEee
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      +. ++|..+..     .+.++.....+  .++++|||++|+.+.          .++. |.++|..+++.+..++
T Consensus       101 Vs-VID~~t~~-----vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~-VsviD~~t~~vv~~I~  166 (426)
T 3c75_H          101 QF-VIDGSTGR-----ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY-VEVFDPVTFLPIADIE  166 (426)
T ss_dssp             EE-EEETTTTE-----EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTCCEEEEEE
T ss_pred             EE-EEECCCCE-----EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCE-EEEEECCCCcEEEEEE
Confidence            44 66776665     77778755556  799999999888875          3667 9999999999888775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.91  E-value=0.004  Score=38.42  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             EEEcccCCcCCCCCcEEe---cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940           7 SQDLSSTELSSSSSPVTI---NAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~---~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +||..+..     ...++   .++...+..|+++|+|+.+++...++. |++|++.
T Consensus       272 ~~~~~~g~-----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~-I~~~~~~  321 (329)
T 3fvz_A          272 VMNFSSGE-----IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNT-VWKFTLT  321 (329)
T ss_dssp             EEETTTCC-----EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCC-EEEEEEE
T ss_pred             EEEcCCCe-----EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCE-EEEEeCC
Confidence            56655543     66666   366777899999999988888888999 9999865

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.89  E-value=0.0044  Score=37.69  Aligned_cols=50  Identities=8%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC-CCeEEe
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS-DPATLY   77 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~-~~~~~~   77 (78)
                      +.+....++++++|+..++...++. |.+||..+|+.+..++.+. .+..++
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             CCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEECCCCCceEEE
Confidence            3456788999999988887777888 9999999899888887653 344443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.86  E-value=0.017  Score=34.44  Aligned_cols=48  Identities=8%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             CcEEecCC--ccCEEEEEECCCCCEEEEEcCCC-CEEEEeeCCCCcEEEEeeC
Q psy1940          20 SPVTINAH--QSELACLALNQTGTMIATASSKG-TLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        20 ~~~~~~~h--~~~i~~v~fs~dg~~l~s~~~d~-~~i~i~d~~~~~~~~~~~~   69 (78)
                      ....+..+  ...+..++++++|+.+++...++ . |.+||. ++..+..+..
T Consensus       196 ~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~  246 (286)
T 1q7f_A          196 YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALES  246 (286)
T ss_dssp             EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEE
T ss_pred             EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcc
Confidence            45555433  35788999999999888887775 8 999995 5666666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.84  E-value=0.016  Score=34.87  Aligned_cols=43  Identities=7%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~   63 (78)
                      ....+..+....+.++|+|||+.+++.+.++. |.+||+. ++..
T Consensus       163 ~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~  206 (296)
T 3e5z_A          163 TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNARGET  206 (296)
T ss_dssp             CEEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECSSSCE
T ss_pred             CEEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECCCCcC
Confidence            34445556667789999999999987888888 9999986 4554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.81  E-value=0.015  Score=35.43  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCC----CCEEEEeeCCCCcEE
Q psy1940          26 AHQSELACLALNQTGTMIATASSK----GTLIRVWDTLKKVQL   64 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d----~~~i~i~d~~~~~~~   64 (78)
                      .+...+.+++++|+|+.+++...+    +. |.+||..++...
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~-i~~~d~~~~~~~  125 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGG-IFAATENGDNLQ  125 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCE-EEEECTTSCSCE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCce-EEEEeCCCCEEE
Confidence            566789999999999988877766    67 999998877654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.75  E-value=0.0011  Score=40.98  Aligned_cols=46  Identities=7%  Similarity=-0.018  Sum_probs=31.6

Q ss_pred             CcEEecCCccC-----EEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEE
Q psy1940          20 SPVTINAHQSE-----LACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVE   66 (78)
Q Consensus        20 ~~~~~~~h~~~-----i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~   66 (78)
                      ....+..+...     +..++|||||++|+....+   .. +.+||+.+++....
T Consensus        22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~-l~~~d~~~~~~~~l   75 (396)
T 3c5m_A           22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRN-YYLLNLETQQAVQL   75 (396)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE-EEEEETTTTEEEEC
T ss_pred             ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCce-EEEEECCCCcEEEe
Confidence            55566554333     6778999999998876543   35 77889888765443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.68  E-value=0.0078  Score=37.25  Aligned_cols=64  Identities=9%  Similarity=0.077  Sum_probs=42.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCC----------CCEEEEeeCCCCcEEEEeeC--CCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSK----------GTLIRVWDTLKKVQLVELRR--GSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d----------~~~i~i~d~~~~~~~~~~~~--~~~~~   74 (78)
                      ++|..+..     ...++.... ....++++|+|+.++++..+          +. |.++|..+++....+..  +..|.
T Consensus       156 viD~~t~~-----~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          156 KIDTETDK-----VVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             EEETTTTE-----EEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCTTCCCE
T ss_pred             EEECCCCe-----EEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCCCCCce
Confidence            56665543     555555432 34678999999977776654          67 99999999988766653  33454


Q ss_pred             EEe
Q psy1940          75 TLY   77 (78)
Q Consensus        75 ~~~   77 (78)
                      .++
T Consensus       229 ~la  231 (328)
T 3dsm_A          229 EVQ  231 (328)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.63  E-value=0.025  Score=33.95  Aligned_cols=44  Identities=11%  Similarity=-0.053  Sum_probs=35.8

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEE
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~   65 (78)
                      ...+..+...+.+++++|+|+.+++...++. |.+||..+++...
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~-i~~~d~~~g~~~~  104 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR-LERQREPGGEWES  104 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTE-EEEECSTTCCEEE
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCe-EEEEcCCCCcEEE
Confidence            4556667778999999999998888777788 9999998887543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.62  E-value=0.0094  Score=36.74  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             CEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ....++++|+ |..+++...++. |++||..+|+.+..+.
T Consensus       197 ~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          197 VPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEEC
T ss_pred             CCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEe
Confidence            3789999998 777777778888 9999998888888774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.60  E-value=0.0013  Score=44.89  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             cCEEEEEECCCCCEEEEEcCC-----CCEEEEeeCCCCcEEEE
Q psy1940          29 SELACLALNQTGTMIATASSK-----GTLIRVWDTLKKVQLVE   66 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d-----~~~i~i~d~~~~~~~~~   66 (78)
                      ..+..++|||||++|+.++.+     .. |++||+.+|+.+..
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~-i~v~dl~tg~~~~~  204 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRT-VKFVGVADGKPLAD  204 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEE-EEEEETTTCCEEEE
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEE-EEEEECCCCCCCCc
Confidence            367889999999999887554     45 99999999986543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.60  E-value=0.008  Score=37.46  Aligned_cols=36  Identities=8%  Similarity=0.085  Sum_probs=29.8

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC-CCcEEE
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTL-KKVQLV   65 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~-~~~~~~   65 (78)
                      ...+..++|+|||++|++++.+ . |.+||+. +++...
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~-v~~~~~~~~g~~~~   75 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-K-WSSFAVKSPTEIVH   75 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-E-EEEEEEEETTEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-e-EEEEEECCCCCEEE
Confidence            3467789999999999999888 7 9999987 776544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.48  E-value=0.0014  Score=44.63  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CccCEEEEEECCCCCEEEEE-----cCCCCEEEEeeCCCCcEEE
Q psy1940          27 HQSELACLALNQTGTMIATA-----SSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~-----~~d~~~i~i~d~~~~~~~~   65 (78)
                      |...+..++|||||++||-+     ++... |+++|+.+|+.+.
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~-i~v~dl~tg~~~~  169 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWRE-IHLMDVESKQPLE  169 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEE-EEEEETTTCSEEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEE-EEEEECCCCCCCc
Confidence            44568889999999988843     33346 9999999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.42  E-value=0.034  Score=33.11  Aligned_cols=48  Identities=8%  Similarity=0.114  Sum_probs=35.4

Q ss_pred             CcEEec--CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          20 SPVTIN--AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        20 ~~~~~~--~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ....+.  .+...+..++++|+|+.+++...++. |.+||. ++..+..+..
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~~  202 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNY-EGQYLRQIGG  202 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEET-TCCEEEEESC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcC-CCCEEEEEcc
Confidence            444443  34456889999999998888888888 999997 4566666643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.36  E-value=0.012  Score=35.40  Aligned_cols=46  Identities=9%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             ecCCc-cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          24 INAHQ-SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        24 ~~~h~-~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +..+. ..+..++++++|+..++...++. |.+||..+++.+..+..+
T Consensus       220 ~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g~~~~~~~~~  266 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGGQPKMRIRCP  266 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCBSCSEEEECS
T ss_pred             CCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCCcEeEEEeCC
Confidence            33443 55788999999998888777888 999999877766555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.14  E-value=0.036  Score=37.37  Aligned_cols=58  Identities=7%  Similarity=-0.065  Sum_probs=42.8

Q ss_pred             eeeEEEcc--cCCcCCCCCcEEecCCccCEEEEEEC----CCCCEEEEEcCC-CCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLS--STELSSSSSPVTINAHQSELACLALN----QTGTMIATASSK-GTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~--~~~~~~~~~~~~~~~h~~~i~~v~fs----~dg~~l~s~~~d-~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+.  +.     +....+..... ...++|+    |||++++++.+. +. +.++|..+.+.+..++.
T Consensus       220 V~-viD~~~~t~-----~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~~~~~i~~  284 (567)
T 1qks_A          220 VN-MIDLWMKEP-----TTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEPKKIQST  284 (567)
T ss_dssp             EE-EEETTSSSC-----CEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCCEEEEEEC
T ss_pred             EE-EEECCCCCC-----cEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCe-EEEEECCCCcEEEEEec
Confidence            45 77875  33     36666765443 4689999    699988887665 66 99999999998887763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.90  E-value=0.058  Score=32.28  Aligned_cols=40  Identities=10%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIA-TASSKGTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~   60 (78)
                      ....+..+...+.+++|+|+|+.|+ +...++. |..+|+..
T Consensus       259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-l~~~~~~~  299 (314)
T 1pjx_A          259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQR  299 (314)
T ss_dssp             CSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECSS
T ss_pred             EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe-EEEEeCCC
Confidence            5566666667889999999999555 4455677 88998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.79  E-value=0.036  Score=37.57  Aligned_cols=37  Identities=11%  Similarity=0.040  Sum_probs=27.4

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCC----CEEEEeeCCCCcE
Q psy1940          26 AHQSELACLALNQTGTMIATASSKG----TLIRVWDTLKKVQ   63 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~----~~i~i~d~~~~~~   63 (78)
                      .|...+.+++|||||++|+..+.++    . +.++|..++..
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~-l~~~~~~~~~~  264 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSEND-VYWKRPGEKDF  264 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEE-EEEECTTCSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceE-EEEEcCCCCce
Confidence            3556788999999999998877665    5 66777655543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.73  E-value=0.03  Score=38.39  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      |. .||+.+++     ..-.++.+. +...-.+...|..++.++.|+. ++.||.++|+.+.+++.+
T Consensus       457 l~-A~D~~tG~-----~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          457 LI-AWDPVKQQ-----AAWEVPYVT-IFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EE-EEETTTTE-----EEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred             EE-EEECCCCC-----eEeEccCCC-CccCccceECCCEEEEECCCCc-EEEEECCCCccceeeeCC
Confidence            44 57776664     444444333 3333456667889999999999 999999999999888754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.51  E-value=0.078  Score=32.21  Aligned_cols=49  Identities=4%  Similarity=-0.025  Sum_probs=38.8

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +.+-++..+ +...++.+.++|+.++++..++. |..+|..+|+.+.++..
T Consensus       156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             CEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEG
T ss_pred             CEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecC
Confidence            366666554 34566788999999999888888 99999999999988864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.40  E-value=0.11  Score=30.37  Aligned_cols=34  Identities=12%  Similarity=0.102  Sum_probs=27.9

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      ..+..++++++|..+++...++. |.+||......
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~  225 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTS  225 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCC
T ss_pred             CCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcc
Confidence            56789999999988777777888 99999876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.38  E-value=0.037  Score=37.92  Aligned_cols=58  Identities=16%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      .||+.+++     ..-.++ +..++....+..+|..++.++.|+. +++||.++|+.+..+..+.
T Consensus       461 A~D~~tG~-----~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          461 AWDPVAQK-----AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             EEETTTTE-----EEEEEE-ESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSS
T ss_pred             EEeCCCCc-----EEeecC-CCCCCcCcceEeCCCEEEEECCCCc-EEEEECCCCceeeeeeCCC
Confidence            46766554     333333 2334455556678888999999999 9999999999999887543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.16  E-value=0.05  Score=31.89  Aligned_cols=34  Identities=9%  Similarity=0.123  Sum_probs=28.6

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      ...+.+++++++|+.+++...++. |++++....+
T Consensus       233 ~~~p~~i~~~~~g~l~v~~~~~~~-v~~~~~~~~~  266 (270)
T 1rwi_B          233 LNTPLAVAVDSDRTVYVADRGNDR-VVKLTSLEHH  266 (270)
T ss_dssp             CSCEEEEEECTTCCEEEEEGGGTE-EEEECCCGGG
T ss_pred             CCCceeEEECCCCCEEEEECCCCE-EEEEcCCCcc
Confidence            356789999999998888888998 9999977544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.13  E-value=0.13  Score=34.86  Aligned_cols=33  Identities=9%  Similarity=0.090  Sum_probs=26.4

Q ss_pred             CccCEEEEEECCCCCEEEEEcC-----CCCEEEEeeCCC
Q psy1940          27 HQSELACLALNQTGTMIATASS-----KGTLIRVWDTLK   60 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~-----d~~~i~i~d~~~   60 (78)
                      |...+..++|||||++|+..+.     +.. +.+||+.+
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~-l~~~d~~~  268 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNR-LWYCDLQQ  268 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCE-EEEEEGGG
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccE-EEEEECcc
Confidence            4555788999999999987764     556 99999876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.01  E-value=0.014  Score=36.83  Aligned_cols=54  Identities=7%  Similarity=0.083  Sum_probs=30.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .||..+++     ..-.+..  +++.+..+..+|+.+++++.|+. +..||..+|+.+..++
T Consensus        23 a~d~~tG~-----~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~-l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A           23 AVSKRTGS-----IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS-LYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             EEETTTCC-----EEEEEEC--CCSCCCC-----CCEEECTTTCC-EEEC-----CCSEECS
T ss_pred             EEECCCCC-----EEEEecC--CCceecceEcCCCEEEEeCCCCE-EEEEECCCCceeeeee
Confidence            56766654     5445554  45555556668888888899999 9999999888766554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.90  E-value=0.099  Score=33.54  Aligned_cols=40  Identities=10%  Similarity=-0.015  Sum_probs=31.3

Q ss_pred             cCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          29 SELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .....++|+++|+.+++...++. |++||..++........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~-I~~id~~~g~~~~~~~~  170 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPR-VRLISVDDNKVTTVHPG  170 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTE-EEEEETTTTEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEecCCCc-EEEEECCCCEEEEeecc
Confidence            35678999999997777777788 99999988776555443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.69  E-value=0.083  Score=37.74  Aligned_cols=38  Identities=11%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.+++..++..++.+-+.|+. +|+|++.++.++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeec
Confidence            4677778888899999999999 9999999999988764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.05  E-value=0.42  Score=32.68  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=25.8

Q ss_pred             cCEEEEEECCCCCEEEEEcCCC-----CEEEEeeCCCC
Q psy1940          29 SELACLALNQTGTMIATASSKG-----TLIRVWDTLKK   61 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~~~d~-----~~i~i~d~~~~   61 (78)
                      ..+.++.|||||++|+..+.++     . |.+||+.++
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~-l~~~d~~~~  304 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNT-VHVARVTNG  304 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCE-EEEEEEETT
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcce-EEEEECCCC
Confidence            3578999999999988876543     6 899998776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=93.92  E-value=0.16  Score=34.79  Aligned_cols=50  Identities=16%  Similarity=0.056  Sum_probs=33.2

Q ss_pred             EEEcccCCcCCCCC-cEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSS-PVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTLKK   61 (78)
Q Consensus         7 i~d~~~~~~~~~~~-~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~   61 (78)
                      +.|.++..   .+. ...++.. ....++.++|||+++++++. +.+ |.++|+.+.
T Consensus       258 VID~~~~~---~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~  309 (595)
T 1fwx_A          258 VVDGRKEA---SSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRF  309 (595)
T ss_dssp             EEECSGGG---CCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGH
T ss_pred             EEeCcccC---CceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCe-EEEEECccc
Confidence            66776521   113 4555432 24478999999998887754 456 999999865

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=93.88  E-value=0.4  Score=29.49  Aligned_cols=48  Identities=8%  Similarity=-0.001  Sum_probs=33.8

Q ss_pred             CcEEecCCcc--CEEEEEECCCCCEEEEEcC--CCCEEEEeeCCCCcEEEEeeC
Q psy1940          20 SPVTINAHQS--ELACLALNQTGTMIATASS--KGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        20 ~~~~~~~h~~--~i~~v~fs~dg~~l~s~~~--d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .+.+++ |..  ....++|+|||...++.+.  ++. |++.|+.+++.+..+.-
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~-v~~iD~~tg~v~~~i~l   62 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSS-VRQVALQTGKVENIHKM   62 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCE-EEEEETTTCCEEEEEEC
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCE-EEEEECCCCCEEEEEec
Confidence            445553 432  3578999999755555443  466 99999999999988763

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.68  E-value=0.074  Score=38.52  Aligned_cols=38  Identities=11%  Similarity=0.100  Sum_probs=32.1

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      .+.+++..++.+++++-+.|++ +|+||+.++.++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEeec
Confidence            3445566778899999999999 9999999999988764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.44  E-value=0.77  Score=28.14  Aligned_cols=43  Identities=9%  Similarity=0.165  Sum_probs=32.2

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      .......++++++|+..++...++. |.+||. +++.+..+..+.
T Consensus       228 ~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~~  270 (326)
T 2ghs_A          228 IKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVPG  270 (326)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECSC
T ss_pred             CCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECCC
Confidence            4455678999999987777766778 999998 577666665443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=93.40  E-value=0.25  Score=30.52  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=31.5

Q ss_pred             CccCEEEEEECCCCCEEEEEcC-----CCCEEEEeeCCCCcEEEEee
Q psy1940          27 HQSELACLALNQTGTMIATASS-----KGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~-----d~~~i~i~d~~~~~~~~~~~   68 (78)
                      |...+..++|+++|+.+++-..     +.. |.+||+.+++.+..+.
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~-i~~~d~~tg~~~~~~~  110 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPK-LVAWDTLNNQLSRVIY  110 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCE-EEEEETTTTEEEEEEE
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCe-EEEEECCCCeEEEEEE
Confidence            4567899999999876655433     467 9999999998777665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.22  E-value=0.57  Score=28.63  Aligned_cols=53  Identities=11%  Similarity=0.062  Sum_probs=37.4

Q ss_pred             EecCCccCEEEEEECCCCCEEEE-EcCCCCEEEEeeCCCCcEEEEee--CCCCCeEEe
Q psy1940          23 TINAHQSELACLALNQTGTMIAT-ASSKGTLIRVWDTLKKVQLVELR--RGSDPATLY   77 (78)
Q Consensus        23 ~~~~h~~~i~~v~fs~dg~~l~s-~~~d~~~i~i~d~~~~~~~~~~~--~~~~~~~~~   77 (78)
                      .+++-.+.+..++++|+++.|++ ..+++. |...|.. ++.++.++  +..++..+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~-I~~ld~~-g~v~~~i~l~g~~D~EGIa   76 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAA-IVEMTTN-GDLIRTIPLDFVKDLETIE   76 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEE-EEEEETT-CCEEEEEECSSCSSEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCe-EEEEeCC-CCEEEEEecCCCCChHHeE
Confidence            44555567999999998776665 666777 8888987 88887775  334555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=92.72  E-value=0.55  Score=28.98  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=28.7

Q ss_pred             cCEEEEEECCCCCEE-EEEc---CCCCEEEEeeCCCCcEEEEeeC
Q psy1940          29 SELACLALNQTGTMI-ATAS---SKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l-~s~~---~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ..++.+++++++..+ ++-.   .++. |.+||..+++....+.+
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~~r~~~~  163 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLAARVLQG  163 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCEEEECTT
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCEEEEecC
Confidence            356889999865555 4444   5677 99999998887666644

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.63  E-value=0.18  Score=31.03  Aligned_cols=55  Identities=7%  Similarity=0.012  Sum_probs=37.2

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++|..+..     .+.++....+  ....+++||+.|+++..++. +.+.|..+.+.+..++-
T Consensus        90 viD~~t~~-----v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           90 IYDRRTLS-----NIKNFTHQMK--DGWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             EEETTTTE-----EEEEEECCSS--SCCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred             EEECCCCc-----EEEEEECCCC--CeEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEE
Confidence            56665544     5666653211  12346678888888777888 99999999888877763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=92.55  E-value=0.39  Score=28.95  Aligned_cols=33  Identities=9%  Similarity=-0.021  Sum_probs=24.4

Q ss_pred             cCEEEEEECCCCCEEE-EEcCCCCEEEEeeC--CCCc
Q psy1940          29 SELACLALNQTGTMIA-TASSKGTLIRVWDT--LKKV   62 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~--~~~~   62 (78)
                      ...+.++|+|||+.|+ +.+.++. |.+||+  .+|.
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~-i~~~~~d~~~G~  184 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYS-VDAFDYDLQTGQ  184 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTE-EEEEEECTTTCC
T ss_pred             ccccceEEcCCCCEEEEecCCCCc-EEEEeccCCCCc
Confidence            3457899999998765 4566777 999986  4554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.32  E-value=0.66  Score=27.19  Aligned_cols=38  Identities=8%  Similarity=0.072  Sum_probs=30.2

Q ss_pred             ecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          24 INAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        24 ~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      +..+...+.+++++++|+..++...++. |..||.. +..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~-v~~~d~~-~~~   47 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANM-ISCINLD-GKI   47 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTE-EEEECTT-CCE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCc-EEEEcCC-CCe
Confidence            3445668899999999998887776788 9999987 544

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=91.94  E-value=0.48  Score=33.34  Aligned_cols=37  Identities=8%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .|.++.+  +.+++++-+.|++ +|+||++++.++....-
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~-LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCH-LKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCE-EEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCe-EEEEEcCCCceEEeecc
Confidence            4566655  4679999999999 99999999998877754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=91.87  E-value=1.3  Score=26.72  Aligned_cols=41  Identities=7%  Similarity=0.025  Sum_probs=30.2

Q ss_pred             CcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCCCCc
Q psy1940          20 SPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      .+..+..+.......+|+|+|+ .+++...++. |..||. ++.
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~-i~~~~~-~g~   77 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRR-VLGWRE-DGT   77 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTE-EEEEET-TSC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCE-EEEEeC-CCC
Confidence            4455555555677899999998 5667777888 999997 454

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=91.41  E-value=0.78  Score=28.13  Aligned_cols=32  Identities=9%  Similarity=-0.077  Sum_probs=24.5

Q ss_pred             cCEEEEEECCCCCEEEEE-cCCCCEEEEeeCC--CC
Q psy1940          29 SELACLALNQTGTMIATA-SSKGTLIRVWDTL--KK   61 (78)
Q Consensus        29 ~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~--~~   61 (78)
                      ...+.++|+|||+.|+.+ +.++. |.+||..  +|
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~-I~~~d~~~~~G  213 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTG  213 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTC
T ss_pred             cccCCeEEcCCCCEEEEEECCCCE-EEEEEcccccC
Confidence            456789999999877554 55677 9999975  55

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.33  E-value=0.44  Score=29.57  Aligned_cols=54  Identities=4%  Similarity=-0.123  Sum_probs=37.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +||..+..     ...+++..... .  .+.+||+.|+.+..++. |.++|..+.+.+..++-
T Consensus       120 V~D~~Tl~-----~~~ti~~~~eG-w--GLt~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          120 TWSGMPPQ-----RERTTRYSGEG-W--GLCYWNGKLVRSDGGTM-LTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             EEETTTTE-----EEEEEECSSCC-C--CEEEETTEEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred             EEECCcCc-----EEEEEeCCCce-e--EEecCCCEEEEECCCCE-EEEEcCCCCeEEEEEEe
Confidence            56666554     66666532211 2  33467888888877888 99999999988877764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=91.31  E-value=0.62  Score=28.40  Aligned_cols=54  Identities=13%  Similarity=0.101  Sum_probs=37.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++|..+..     ...+++....+ ..+  .+||+.|+.+..++. |.++|..+.+.+..++-
T Consensus        89 v~D~~tl~-----~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           89 VYDLATLT-----PRARFRYPGEG-WAL--TSDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEETTTTE-----EEEEEECSSCC-CEE--EECSSCEEEECSSSE-EEEECTTTCCEEEEEEC
T ss_pred             EEECCcCc-----EEEEEeCCCCc-eEE--eeCCCEEEEECCCCe-EEEEeCCCCeEEEEEEE
Confidence            56666554     66667643222 333  467777877777888 99999999888877764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.26  E-value=0.95  Score=28.08  Aligned_cols=40  Identities=18%  Similarity=0.218  Sum_probs=26.8

Q ss_pred             EEECCCCCEEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940          34 LALNQTGTMIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus        34 v~fs~dg~~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +++  +|+.|+.. -.++. +.++|..+.+.+.+++-...+..|
T Consensus       101 it~--~g~~Ly~ltw~~~~-v~V~D~~Tl~~~~ti~~~~eGwGL  141 (268)
T 3nok_A          101 LAS--DGERLYQLTWTEGL-LFTWSGMPPQRERTTRYSGEGWGL  141 (268)
T ss_dssp             EEE--CSSCEEEEESSSCE-EEEEETTTTEEEEEEECSSCCCCE
T ss_pred             EEE--eCCEEEEEEccCCE-EEEEECCcCcEEEEEeCCCceeEE
Confidence            444  44445544 45666 999999999999998854443333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=91.16  E-value=1.5  Score=26.33  Aligned_cols=40  Identities=8%  Similarity=-0.048  Sum_probs=30.3

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV   62 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~   62 (78)
                      ...+..+.+.++.++++++|+.+++...++. |..||.. ++
T Consensus        78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g~  117 (305)
T 3dr2_A           78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-GQ  117 (305)
T ss_dssp             EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-SC
T ss_pred             EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-CC
Confidence            4455556677899999999997766666677 9999875 54

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=91.14  E-value=0.29  Score=30.23  Aligned_cols=54  Identities=7%  Similarity=0.088  Sum_probs=36.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++|..+..     ...+++...   ....+++||+.|+.+..++. |.++|..+.+.+..++-
T Consensus       111 v~D~~t~~-----~~~ti~~~~---eG~glt~dg~~L~~SdGs~~-i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          111 VWNIRNLR-----QVRSFNYDG---EGWGLTHNDQYLIMSDGTPV-LRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEETTTCC-----EEEEEECSS---CCCCEEECSSCEEECCSSSE-EEEECTTTCSEEEEEEC
T ss_pred             EEECccCc-----EEEEEECCC---CceEEecCCCEEEEECCCCe-EEEEcCCCCeEEEEEEe
Confidence            56666554     666676432   22334467888887777777 99999999888777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=90.92  E-value=1.8  Score=27.63  Aligned_cols=36  Identities=11%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      +...+++++++|++..|+.+..++. |..||..++..
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~-I~~~d~~~~~~  252 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKN-FGRFNVKTQEV  252 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCE-EEEEETTTCCE
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCc-EEEEECCCCCE
Confidence            4456788999995555666777888 99999887753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=90.04  E-value=1.9  Score=26.62  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      .+|+.++.     ..+.+.... ........++|+.|+... .++. +.++|..+.+.+.+++-...+
T Consensus        69 ~vD~~Tgk-----v~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~t~~~~~ti~~~~eG  129 (262)
T 3nol_A           69 KVDIESGK-----TLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL-GFVWNIRNLRQVRSFNYDGEG  129 (262)
T ss_dssp             EECTTTCC-----EEEEEECCT-TCCEEEEEEETTEEEEEESSSSE-EEEEETTTCCEEEEEECSSCC
T ss_pred             EEECCCCc-----EEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE-EEEEECccCcEEEEEECCCCc
Confidence            45555443     555554332 223333333466666665 4566 999999999999998854443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=89.53  E-value=0.92  Score=30.28  Aligned_cols=38  Identities=18%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             EEEEECCCCCEEEEEc-------------------CCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          32 ACLALNQTGTMIATAS-------------------SKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        32 ~~v~fs~dg~~l~s~~-------------------~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +.+.|+|+++.++++.                   .+.. |.+||+.+++.+.++.-+
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~-V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR-IHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE-EEEEETTTTEEEEEEESC
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE-EEEEECCCCcEeeEEecC
Confidence            3578899999998874                   3567 999999998887777653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=89.23  E-value=2.1  Score=24.94  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             CccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          27 HQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      +...+.+++++++|+..++...++. |..||..
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~~   86 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANK-IGRITKK   86 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTE-EEEECTT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCe-EEEECCC
Confidence            4567889999999998888777888 9999976

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.19  E-value=0.74  Score=28.93  Aligned_cols=30  Identities=10%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++..+++++.|+. +..||..+|+.+..++.
T Consensus         8 ~~~~v~~gs~dg~-v~a~d~~tG~~~W~~~~   37 (369)
T 2hz6_A            8 PETLLFVSTLDGS-LHAVSKRTGSIKWTLKE   37 (369)
T ss_dssp             CTTEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred             eCCEEEEEcCCCE-EEEEECCCCCEEEEecC
Confidence            5778999999999 99999999999877765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=88.68  E-value=1.1  Score=30.58  Aligned_cols=35  Identities=14%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             EECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          35 ALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        35 ~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .+...|..++.++.|+. ++.||.++|+.+..++..
T Consensus       464 ~~~t~gg~vf~g~~dg~-l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          464 TLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred             eeEeCCCEEEEECCccc-chhhhhhcChhheEecCC
Confidence            34446778999999999 999999999999888654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=88.41  E-value=1.1  Score=29.92  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             ccCEEEEEECCC---CCEEEEEcCCCCEEEEeeCCC
Q psy1940          28 QSELACLALNQT---GTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        28 ~~~i~~v~fs~d---g~~l~s~~~d~~~i~i~d~~~   60 (78)
                      ..+|..+.|.|-   |..|++-..|+. ||+||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCE-EEEEEccc
Confidence            578999999994   568999999999 99999886

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.24  E-value=1  Score=28.81  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=22.9

Q ss_pred             CEEEEEECCCCCEEEEEc-CCCCEEEEeeCC
Q psy1940          30 ELACLALNQTGTMIATAS-SKGTLIRVWDTL   59 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~   59 (78)
                      .-+.++|||||+.|+.+. ..+. |..||+.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~-I~~~~~~  251 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHK-IHVYEKH  251 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTE-EEEEEEC
T ss_pred             ccCcceECCCCCEEEEEeCCCCe-EEEEEEC
Confidence            458899999998877765 4566 9999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.17  E-value=0.92  Score=30.47  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .+..++.++.|+. +..+|.++|+.+.+++..
T Consensus       474 ~gg~v~~g~~dg~-l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          474 KGGLVWYATLDGY-LKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEEcCCCe-EEEEECCCCCEEEEEeCC
Confidence            4667888999999 999999999999888743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=87.94  E-value=2.7  Score=24.53  Aligned_cols=37  Identities=14%  Similarity=0.020  Sum_probs=29.5

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL   64 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~   64 (78)
                      .....+.+++++++|+..++...++. |.++|.. ++..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~-~~~~   53 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANK-ISSLDQS-GRIK   53 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTE-EEEECTT-SCEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCe-EEEECCC-CceE
Confidence            34567889999999998888777888 9999987 5543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=86.92  E-value=5.5  Score=27.06  Aligned_cols=33  Identities=6%  Similarity=0.130  Sum_probs=23.8

Q ss_pred             ccCEEEEEECCCCCEEEEEcC----CCCEEEEeeCCCC
Q psy1940          28 QSELACLALNQTGTMIATASS----KGTLIRVWDTLKK   61 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~----d~~~i~i~d~~~~   61 (78)
                      .....++.|||||++|+....    +.. +.++|+.++
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~~  269 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNR-LYVKDLSQE  269 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCE-EEEEETTST
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcE-EEEEECCCC
Confidence            334678999999998865432    236 889998765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=86.41  E-value=1.3  Score=29.82  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      .|..++.++.|+. ++.+|.++|+.+.+++..
T Consensus       496 agglvf~g~~dg~-l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          496 AGNLVFTGTGDGY-FKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEECS
T ss_pred             CCCEEEEECCCCc-EEEEECCCCCEEEEecCC
Confidence            4667888999999 999999999999888753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=86.03  E-value=0.69  Score=31.95  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=24.5

Q ss_pred             CEEEEEEC-CCCCEEEEEcC-----CCCEEEEeeCCCC-c
Q psy1940          30 ELACLALN-QTGTMIATASS-----KGTLIRVWDTLKK-V   62 (78)
Q Consensus        30 ~i~~v~fs-~dg~~l~s~~~-----d~~~i~i~d~~~~-~   62 (78)
                      .+...+|| |||++||-+..     ... |.++|+.++ +
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~-l~v~dl~~g~~  213 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYT-IEFKRISDPSQ  213 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEE-EEEEETTCTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEE-EEEEECCCCCE
Confidence            56789999 99998885432     235 899999988 5

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.80  E-value=2.8  Score=26.69  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             cEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          21 PVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        21 ~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      +.++...-.....++|.|||+.+++....+. |++++..++..
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~-I~~v~~~~g~~   65 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEAT-ITRVDAKTGRK   65 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCE
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCE-EEEEECCCCcE
Confidence            3344444456689999999998887766888 99888665543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=83.39  E-value=5.7  Score=24.14  Aligned_cols=38  Identities=11%  Similarity=-0.064  Sum_probs=26.7

Q ss_pred             CCCEEEEE-cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940          39 TGTMIATA-SSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus        39 dg~~l~s~-~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +++.|+.. -.++. +.++|..+.+.+.+++....+..|+
T Consensus        73 ~~~~ly~ltw~~~~-v~v~D~~tl~~~~ti~~~~~Gwglt  111 (243)
T 3mbr_X           73 WRDRLIQLTWRNHE-GFVYDLATLTPRARFRYPGEGWALT  111 (243)
T ss_dssp             ETTEEEEEESSSSE-EEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             eCCEEEEEEeeCCE-EEEEECCcCcEEEEEeCCCCceEEe
Confidence            35555554 45666 9999999999999998655554443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=83.35  E-value=5.5  Score=23.98  Aligned_cols=40  Identities=20%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK   61 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~   61 (78)
                      ....|... .....++|+++|+.+++-..++. |..+|...+
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~   63 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN   63 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc
Confidence            44455433 45678999999997777667888 999987643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=81.75  E-value=3  Score=28.73  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=31.5

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCC----------CcEEEEeeCCCCC
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLK----------KVQLVELRRGSDP   73 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~----------~~~~~~~~~~~~~   73 (78)
                      ...-++|+|||....+.-.|+. |.+||+..          ...+.++.-|-.|
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqp  384 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP  384 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred             CcceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence            3466899999954556677777 99999877          4567777766554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=80.68  E-value=6.3  Score=22.86  Aligned_cols=36  Identities=6%  Similarity=0.013  Sum_probs=27.5

Q ss_pred             CCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          26 AHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .+...+.+++++++|+..++...++. |..+|. ++..
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~  262 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTI  262 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCE
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcE
Confidence            34566789999999997777666788 999998 4543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 3e-05
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78
           ++ H+S +  +  +   +++ +AS   T I+VWD         L+  +D      
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQDIS 66

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 6e-05
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 23  TINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
           T+NAH+  +  L  ++T   + T S   T ++VW+
Sbjct: 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 23  TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT 75
           T+  H + +  +  +  G  I + +   T +RVWD   K  +  L       T
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNAHEHFVT 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 7e-05
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG 70
              H   +  L+ +  G  + +A ++G  I  WD    +        
Sbjct: 7  VRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV 53

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 8e-05
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 14  ELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWD 57
           +   +     +  H + ++CL +   G  +AT S     +++W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF-LKIWN 340

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 1e-04
 Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 23 TINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
             A +  ++ + +  + +++   S  G+ + V+    + + V+L +
Sbjct: 6  IEQAPKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQ 51

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 1e-04
 Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 17  SSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL 59
              + +  +   S +    ++     I T S       V++ +
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK-ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 9e-04
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 27  HQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW 78
           H+S +  L     G    +       +  W T     + + +  S   +   
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDI 314

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (70), Expect = 0.004
 Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 10 LSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR 69
          L    +   +  +    H   +  + ++     + T       ++VWD         + +
Sbjct: 33 LIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDISHPGNKSPVSQ 90

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 9   DLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTL---IRVWD 57
           DL + E   +   +        +  +  + T  + A  S  GT    + V D
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.1 bits (71), Expect = 0.004
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 33 CLALNQTGTMIATASSKGTLIRVWD--TLKKVQLVELRRGSDPAT 75
          C A N+  T IA   +    + +++    K VQ+ EL+  +   T
Sbjct: 12 CHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVT 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.54
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.53
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.47
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.45
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.44
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.38
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.31
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.28
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.27
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.26
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.26
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.25
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.21
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.2
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.2
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.19
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.17
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.16
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.14
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.12
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.12
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.1
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.08
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.08
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.04
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.04
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	98.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.7
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.53
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.33
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.31
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.86
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.51
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.22
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.26
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	94.59
d2nt0a1	143	Glucosylceramidase {Human (Homo sapiens) [TaxId: 9	94.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	93.83
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	93.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	92.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	92.27
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	91.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	89.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	87.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.58
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	84.77
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.78
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.35
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	80.35
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	80.24

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.2e-14  Score=90.47  Aligned_cols=70  Identities=24%  Similarity=0.343  Sum_probs=54.2

Q ss_pred             eeeEEEcccCCc--------CCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTEL--------SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~--------~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+.....        ........+.+|.+.|++++|+|||++|+|++.|++ |++||+++|+++.++++|.++++
T Consensus       258 i~-lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~-v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         258 IT-LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             EE-EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS
T ss_pred             ee-ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE-EEEEECCCCCEEEEECCcCCccc
Confidence            45 788876540        011122233589999999999999999999999999 99999999999999999877653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=1.9e-14  Score=85.89  Aligned_cols=56  Identities=14%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +..++|++|.++|++++|+|++++|+||+.||. |++||+.+++.+..++.|..++.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~-v~iWd~~~~~~~~~~~~~~~~v~  101 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK-LIIWDSYTTNKVHAIPLRSSWVM  101 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEEECSCSCEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCc-eeeeecccceeEEEEecccccEE
Confidence            467889999999999999999999999999999 99999999999999998888765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.9e-14  Score=84.63  Aligned_cols=55  Identities=20%  Similarity=0.310  Sum_probs=51.2

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ..++|++|.++|++++|+|++++|+||+.|++ |++||+.+++.+..+++|..++.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~h~~~V~   63 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDAT-IKVWDYETGDFERTLKGHTDSVQ   63 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSC-EEEEETTTCCCCEEECCCSSCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCCEEEEEeCCCCcEE
Confidence            56789999999999999999999999999999 99999999999999998887765

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.5e-13  Score=80.72  Aligned_cols=68  Identities=22%  Similarity=0.322  Sum_probs=60.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ++ +||+.+..     ++.++.+|.++|.+++|+|+|++|++++.|+. |++||+++++++..+.+|..+++ +.|
T Consensus       229 i~-~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~h~~~V~~~~~  297 (317)
T d1vyhc1         229 IK-MWDVSTGM-----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTLNAHEHFVTSLDF  297 (317)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred             EE-EEECCCCc-----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            45 78887765     88899999999999999999999999999999 99999999999999999888876 443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.45  E-value=1.5e-13  Score=81.84  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=49.4

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee-CCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR-RGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~~   75 (78)
                      +..+++.||.++|++++|+|||++|+||+.|+. |++||+++++++..+. .|..+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~-v~vWd~~~~~~~~~~~~~h~~~v~   59 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDVHATMIT   59 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEECSSCSCSSCEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEcCCCCCcEE
Confidence            367788999999999999999999999999999 9999999999988886 4555554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.44  E-value=5.1e-13  Score=81.33  Aligned_cols=66  Identities=18%  Similarity=0.395  Sum_probs=56.0

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE--EEeeCCCCCeE-EeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL--VELRRGSDPAT-LYW   78 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~~-~~w   78 (78)
                      +||+.+..     ..+.+.+|.++|.+++|+|+|++|++|+.|+. |++||+.++...  ..++.|..++. +.|
T Consensus        42 i~~~~~~~-----~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  110 (311)
T d1nr0a1          42 TVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN-VRIWDTTQTTHILKTTIPVFSGPVKDISW  110 (311)
T ss_dssp             EEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEECCCCc-----eeEEEcCCCCCEEEEEEeCCCCeEeccccCce-EeeeeeeccccccccccccccCccccccc
Confidence            78988776     88889999999999999999999999999999 999999987643  55677777765 544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.1e-13  Score=80.15  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=48.4

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++.+++++|.++|.+ +++++|++|+||+.|++ |++||+.+++++.++.+|..++.
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~-i~vWd~~~~~~~~~~~~h~~~V~   61 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNT-LKVWSAVTGKCLRTLVGHTGGVW   61 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSC-EEEEETTTCCEEEECCCCSSCEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCe-EEEEECCCCCEEEEEeCCCCCEE
Confidence            488899999998865 35667999999999999 99999999999999999887765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=4e-12  Score=78.31  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE--EEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ--LVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~~   75 (78)
                      +. +||+....   ......+++|.++|++++|+|++++|++++.|+. |++||+.++..  ...+.++..++.
T Consensus        31 i~-iw~~~~~~---~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~-i~vWd~~~~~~~~~~~~~~~~~~v~   99 (371)
T d1k8kc_          31 VH-IYEKSGNK---WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN-AYVWTLKGRTWKPTLVILRINRAAR   99 (371)
T ss_dssp             EE-EEEEETTE---EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC-EEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             EE-EEECCCCC---EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe-EEEEeeccccccccccccccccccc
Confidence            56 89986543   1267888999999999999999999999999999 99999987654  344455655554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1.3e-12  Score=77.10  Aligned_cols=58  Identities=10%  Similarity=0.107  Sum_probs=44.6

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE---EEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL---VELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~---~~~~~~~~~~~-~~w   78 (78)
                      .++..++|++.|++|+|+|+|++|++++.|++ |++||++++...   ....+|..++. ++|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~-v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSE-EEEEEEETTTTEEEEEEEEECSSCEEEEEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCe-EEEEEccCCCcceEEEEecCCCCCEEEEEE
Confidence            34456799999999999999999999999999 999998765432   22335666665 544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=5.3e-12  Score=78.26  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             eeeeEEEcccCCcC-CCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCC--EEEEeeCCCCcEEEEee
Q psy1940           3 YLQCSQDLSSTELS-SSSSPVTINAHQSELACLALNQTGTMIATASSKGT--LIRVWDTLKKVQLVELR   68 (78)
Q Consensus         3 ~~~~i~d~~~~~~~-~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~--~i~i~d~~~~~~~~~~~   68 (78)
                      +++ +||+.+.... ..+....+.+|..+|++++|+|||++|++++.|++  .|++||++++.++..+.
T Consensus       206 ~i~-iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~  273 (393)
T d1sq9a_         206 TVQ-ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS  273 (393)
T ss_dssp             EEE-EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             cEE-EEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeec
Confidence            366 8998765411 01123445679999999999999999999998873  18999999999888875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=2.2e-11  Score=74.15  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             eeeEEEcccCCc-------CCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTEL-------SSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~-------~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      +. +||+++...       ...........|...|.+++|+|+|++|++++.|+. |++||+++++++..+++|.+++.
T Consensus       278 i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~~H~~~V~  354 (388)
T d1erja_         278 VK-LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQGHRNSVI  354 (388)
T ss_dssp             EE-EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEECCSSCEE
T ss_pred             EE-EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEeCCCCCEE
Confidence            45 888876531       112245556789999999999999999999999999 99999999999999999888765

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=3.6e-11  Score=71.41  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEe--cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI--NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~--~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      +. +||+....     ....+  ..|..+|.+++|+|+|++|++++.|+. |++||+.+++++..+++|..+++ +.|
T Consensus       250 i~-~~~~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~H~~~V~~l~~  320 (340)
T d1tbga_         250 CR-LFDLRADQ-----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAGHDNRVSCLGV  320 (340)
T ss_dssp             EE-EEETTTTE-----EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EE-EEeecccc-----cccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            45 78887665     44444  366778999999999999999999999 99999999999999999988876 544

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.5e-11  Score=72.08  Aligned_cols=70  Identities=16%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCC--cEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKK--VQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~~   75 (78)
                      ++ |||+.+.............+|.++|.+++|+|||++|++++.|+. |++||+...  .....+..|...+.
T Consensus        74 V~-iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~  145 (337)
T d1gxra_          74 VK-VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST-LSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             EE-EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE-EEEEECCCC--EEEEEEECSSSCEE
T ss_pred             EE-EEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc-ccccccccccccccccccccccccc
Confidence            56 999987653322233344589999999999999999999999999 999998754  45566666665554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=5e-11  Score=72.32  Aligned_cols=65  Identities=6%  Similarity=0.056  Sum_probs=56.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCE-EEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTM-IATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~-l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ++ +|++....     ...++.+|.+.|.+++|+|+|++ |++++.|+. |++||+++++....+..|..+++
T Consensus       128 ~~-v~~~~~~~-----~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~-i~i~d~~~~~~~~~~~~~~~~i~  193 (311)
T d1nr0a1         128 GH-VFLFDTGT-----SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT-VAIFEGPPFKFKSTFGEHTKFVH  193 (311)
T ss_dssp             EE-EEETTTCC-----BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC-EEEEETTTBEEEEEECCCSSCEE
T ss_pred             cc-cccccccc-----ccccccccccccccccccccceeeecccccccc-ccccccccccccccccccccccc
Confidence            45 78877654     67788999999999999999985 888999999 99999999999999988887765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=2e-11  Score=72.52  Aligned_cols=56  Identities=23%  Similarity=0.437  Sum_probs=47.2

Q ss_pred             CcEEecCCccCE-EEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSEL-ACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i-~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ...+|++|.+.| .|++|  +|++|+||+.|++ |++||+.+++++.++.+|..++. +.|
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~-i~vWd~~~~~~~~~l~~H~~~V~~l~~   61 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKM-IRVYDSINKKFLLQLSGHDGGVWALKY   61 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTE-EEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCCEEEEEE
Confidence            356789998875 66665  5789999999999 99999999999999999988876 443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1e-10  Score=70.90  Aligned_cols=67  Identities=10%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      +. +||+....      ......|.++|.+++|+|+|++|++++.|+. |++||+.+++.+..+.+......+.|
T Consensus       248 i~-i~d~~~~~------~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~  314 (337)
T d1gxra_         248 VE-VLHVNKPD------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDI  314 (337)
T ss_dssp             EE-EEETTSSC------EEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred             cc-cccccccc------cccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEccCCCCEEEEEE
Confidence            45 78886653      3456789999999999999999999999999 99999999999888775544333543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.3e-11  Score=68.37  Aligned_cols=53  Identities=15%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      .++.+..|...|.|++|  ||++|+||+.|++ |++||+.+++++..+++|..++.
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~-i~vWd~~~~~~~~~l~~H~~~V~   59 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNT-IKIWDKNTLECKRILTGHTGSVL   59 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSC-EEEEESSSCCEEEEECCCSSCEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCe-EEEEECCCCcEEEEEecCCCCEe
Confidence            55566788889998765  7899999999999 99999999999999999988875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.8e-10  Score=69.95  Aligned_cols=50  Identities=16%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE
Q psy1940          25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT   75 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~   75 (78)
                      ..|...|.+++|+|+|++|++++.|+. |++||...++.+..+.+|..++.
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~-v~i~~~~~~~~~~~~~~h~~~v~  167 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRL-IRIWDIENRKIVMILQGHEQDIY  167 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCCSSCEE
T ss_pred             cCCCCCEEEEEECCCCCcceecccccc-ccccccccccccccccccccccc
Confidence            357778999999999999999999999 99999999999999988877765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=1.4e-10  Score=72.61  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEE--EEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQL--VELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~--~~~~~~   70 (78)
                      ++ +||+.+..     .+.++..|. .+..++|||||++|++++.|+. +++||+.+++..  .+++..
T Consensus        44 v~-vwD~~t~~-----~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~-v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          44 IA-LVDGDSKK-----IVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             EE-EEETTTCS-----EEEEEECCS-SEEEEEECTTSCEEEEEETTSE-EEEEETTSSSCEEEEEEECC
T ss_pred             EE-EEECCCCc-----EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCC-EEEEEccCCceeEEEEEeCC
Confidence            56 99998876     889998775 5899999999999999999999 999999988643  344433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=2.9e-10  Score=67.35  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      ++ +||+.+..     +.+++.+|.++|.+++|+|+ +.|++++.|+. |++|+..............
T Consensus        35 i~-vWd~~~~~-----~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~-i~iw~~~~~~~~~~~~~~~   94 (355)
T d1nexb2          35 IR-VYDSINKK-----FLLQLSGHDGGVWALKYAHG-GILVSGSTDRT-VRVWDIKKGCCTHVFEGHN   94 (355)
T ss_dssp             EE-EEETTTTE-----EEEEEECCSSCEEEEEEETT-TEEEEEETTCC-EEEEETTTTEEEEEECCCS
T ss_pred             EE-EEECCCCc-----EEEEEECCCCCEEEEEEcCC-CEEEEEecccc-ccccccccccccccccccc
Confidence            56 99998765     89999999999999999986 58999999999 9999999888776655433

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.3e-10  Score=68.30  Aligned_cols=47  Identities=13%  Similarity=0.299  Sum_probs=41.7

Q ss_pred             cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940          25 NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      .+|...+++++|+|++++|+||+.||. |++||+++++.+.++..++.
T Consensus       248 ~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~~~l~~~~~~~~  294 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRKKIKNFAKFNE  294 (342)
T ss_dssp             CSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCCCSS
T ss_pred             CcccccceeEEecCCccEEEEECCCCE-EEEEECCCCcEEEEecCCCC
Confidence            356778999999999999999999999 99999999999998876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=3.4e-10  Score=69.47  Aligned_cols=58  Identities=16%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeE-EeC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPAT-LYW   78 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~-~~w   78 (78)
                      ......+|.+.|.+++|+|+|++|++++.|+. |++||++++..+..+..|..++. ++|
T Consensus       193 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAVATLASETLPLLAVTF  251 (371)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred             eeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccceeeeecccccceeeee
Confidence            45566789999999999999999999999999 99999999999999998888765 544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.6e-10  Score=64.22  Aligned_cols=58  Identities=28%  Similarity=0.407  Sum_probs=49.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++ +||+.+..     +.+++.+|.++|.+++|  ++++|++++.|+. |++|++..+.........
T Consensus        37 i~-vWd~~~~~-----~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~-i~~~~~~~~~~~~~~~~~   94 (293)
T d1p22a2          37 IK-IWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDST-VRVWDVNTGEMLNTLIHH   94 (293)
T ss_dssp             EE-EEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEESSSCCEEEEECCC
T ss_pred             EE-EEECCCCc-----EEEEEecCCCCEeeeec--ccceeeccccccc-cccccccccccccccccc
Confidence            56 89998775     89999999999999987  5789999999999 999999988776666544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=1.3e-10  Score=70.53  Aligned_cols=62  Identities=21%  Similarity=0.185  Sum_probs=52.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEEC---CCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALN---QTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs---~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +. +||+++..     ...++.+|..++.++.|+   |||++|++++.|+. |++||+++++++..+..+..
T Consensus       230 i~-iwd~~~~~-----~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         230 IS-CFDGKSGE-----FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             EE-EEETTTCC-----EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTT
T ss_pred             ee-eeeecccc-----ccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCC
Confidence            45 89988775     888999998888766665   68999999999999 99999999999988876543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=2.4e-10  Score=67.38  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC----------CCEEEEEcCCCCEEEEeeCCC-CcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT----------GTMIATASSKGTLIRVWDTLK-KVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d----------g~~l~s~~~d~~~i~i~d~~~-~~~~~~~~~~~~   72 (78)
                      +. +||+.+..    .....+.+|..+|.+++|+|+          +.+|++++.|+. |++||+++ ++.+..+.+|..
T Consensus       186 i~-i~d~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~h~~  259 (287)
T d1pgua2         186 IL-LYDLQSRE----VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNAHKD  259 (287)
T ss_dssp             EE-EEETTTTE----EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTSSTT
T ss_pred             cc-ceeecccc----cccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCCCCC
Confidence            45 88987664    122335689999999999875          468999999999 99999876 556677777877


Q ss_pred             CeE-EeC
Q psy1940          73 PAT-LYW   78 (78)
Q Consensus        73 ~~~-~~w   78 (78)
                      +++ +.|
T Consensus       260 ~V~~v~~  266 (287)
T d1pgua2         260 GVNNLLW  266 (287)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            766 444

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=8.4e-10  Score=69.81  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCc--EEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKV--QLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~--~~~~~~~~~~~   73 (78)
                      +. +||..+..     ++..++.|. .+..++|||||+++++++.|+. +++||+.+++  ...+++....+
T Consensus        44 v~-v~D~~t~~-----v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~-v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          44 IA-LIDGSTYE-----IKTVLDTGY-AVHISRLSASGRYLFVIGRDGK-VNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EE-EEETTTCC-----EEEEEECSS-CEEEEEECTTSCEEEEEETTSE-EEEEETTSSSCCEEEEEECCSEE
T ss_pred             EE-EEECCCCc-----EEEEEeCCC-CeeEEEECCCCCEEEEEcCCCC-EEEEEeeCCCceEEEEEecCCCC
Confidence            56 89998876     889998774 6899999999999999999999 9999998765  44555544433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.04  E-value=4.4e-10  Score=66.44  Aligned_cols=56  Identities=16%  Similarity=0.281  Sum_probs=45.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      +. +||+.+...  ......+.+|..+|.+++|+|+|++|++++.|+. |++||++++..
T Consensus       203 i~-~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~~  258 (299)
T d1nr0a2         203 VI-PYSVANNFE--LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSD  258 (299)
T ss_dssp             EE-EEEGGGTTE--ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTTS
T ss_pred             cc-ccccccccc--ccccccccccccccccccccccccceEEEcCCCE-EEEEECCCCCc
Confidence            45 888877541  1244556789999999999999999999999999 99999987653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=6.6e-10  Score=67.28  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCC-CCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQT-GTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~d-g~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +. +||+......  .....+..|...|.+++|+|| +++|++++.|+. |++||+++++.+..+++|..++
T Consensus       184 v~-~~d~~~~~~~--~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~~~~~v  251 (325)
T d1pgua1         184 VV-FYQGPPFKFS--ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDDQEPV  251 (325)
T ss_dssp             EE-EEETTTBEEE--EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCBTTBCC
T ss_pred             cc-cccccccccc--eecccccCCCCccEEeeeccccceeccccccccc-eeeeeecccccccccccccccc
Confidence            44 7887654300  122223567888999999996 689999999999 9999999999999998877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=1e-09  Score=64.59  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=48.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEe-cCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEE-eeCCCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI-NAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVE-LRRGSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~-~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~~   75 (78)
                      ++ +|++.+..     ....+ ..|..++.+++|+|+|++|++++.|+. |++||+.++..... +..|..+++
T Consensus       143 v~-~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         143 IQ-VFKLSDLE-----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             EE-EEETTEEE-----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCCCSSCEE
T ss_pred             ee-eeeccccc-----eeeeeeeccCCceeEEEeccCcccccccccccc-ccceeecccccccccccccccccc
Confidence            44 67766543     33333 357889999999999999999999999 99999998876543 455555554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.96  E-value=2.3e-09  Score=62.78  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +. +||+.+..     ....+..+ ..+.+++|+|||++| ++++.|+. |.+||+.+++.+.+++-+..|
T Consensus       226 v~-v~D~~t~~-----~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~-i~v~D~~t~~~~~~~~vg~~P  288 (301)
T d1l0qa2         226 VS-MIDTGTNK-----ITARIPVG-PDPAGIAVTPDGKKVYVALSFCNT-VSVIDTATNTITATMAVGKNP  288 (301)
T ss_dssp             EE-EEETTTTE-----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEECSSSE
T ss_pred             ee-eeecCCCe-----EEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCe-EEEEECCCCeEEEEEeCCCCC
Confidence            45 77876654     66667654 457899999999987 57788998 999999999999998865444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.95  E-value=2.9e-09  Score=62.33  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEEe
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRGSDPATLY   77 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~   77 (78)
                      +. +||+.+.+     ..++++.. ..+..++|+|||++| ++++.++. |++||+.+++.+..++.+..+..+.
T Consensus        14 v~-v~D~~t~~-----~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~-i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2          14 IS-VIDVTSNK-----VTATIPVG-SNPMGAVISPDGTKVYVANAHSND-VSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EE-EEETTTTE-----EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EE-EEECCCCe-----EEEEEECC-CCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCceeeeeeccccccccc
Confidence            45 88987765     77788754 346789999999987 46678888 9999999999999998877766554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.95  E-value=1.2e-09  Score=65.40  Aligned_cols=58  Identities=14%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCe
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDPA   74 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~   74 (78)
                      +||+....         ...|.+.|.+++|||||++|++++.||. |++||++++.....+..+..|+
T Consensus       302 ~~d~~~~~---------~~~~~~~v~~~~~SpDG~~l~~~~~Dg~-i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         302 KYDVKTRK---------VTEVKNNLTDLRLSADRKTVMVRKDDGK-IYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             EEETTTCC---------EEEEEEEEEEEEECTTSCEEEEEETTSC-EEEEESSCTTSCEECCCCSSCE
T ss_pred             EEECCCCe---------EEEecCCcCEEEECCCCCEEEEEECCCe-EEEEECCCCCcceEEEeccccc
Confidence            67765532         2334567899999999999999999999 9999999998888777665553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=2.1e-09  Score=63.81  Aligned_cols=58  Identities=12%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      +||..+..     ....+. +...+.+++|+|||++|++++.|+. |++||+++++.+.+++...
T Consensus       276 v~d~~~~~-----~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~-v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         276 KYDLKQRK-----LIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EEETTTTE-----EEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEECSS
T ss_pred             EEECCCCc-----EEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECccCCEEEEEECCC
Confidence            67776654     556554 3456889999999999999999999 9999999999998887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.91  E-value=2.8e-09  Score=63.04  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=48.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +. +||+.+..     ....+. +...+.+++|+|||++|++++.|+. |++||+.+++.+.+++-
T Consensus       262 i~-v~d~~~~~-----~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         262 LE-SFDLEKNA-----SIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EE-EEETTTTE-----EEEEEE-CSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEEEC
T ss_pred             EE-EEECCCCc-----EEEEEc-CCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcEEEEEEC
Confidence            45 78887765     666664 4567889999999999999999999 99999999999988763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=1.3e-08  Score=60.74  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSDP   73 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~   73 (78)
                      +. +||+...      ..+.+..|...|.+++|+|||++|++++.++. +++||+.++.....+..+...
T Consensus        68 v~-v~d~~~~------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  129 (360)
T d1k32a3          68 LG-IYDYRTG------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERSREAM  129 (360)
T ss_dssp             EE-EEETTTC------CEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEECSSSC
T ss_pred             EE-EEECCCC------cEEEeeCCCceEEeeeecccccccceeccccc-cccccccccceeeeeeccccc
Confidence            44 7887654      56677889999999999999999999999999 999999999988887766544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.9e-08  Score=59.06  Aligned_cols=60  Identities=15%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +. +||+.+.+     +.+++.+|.++|.+++|+|+  +|++++.|+. +++|+............+..
T Consensus        39 i~-vWd~~~~~-----~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~-~~~~~~~~~~~~~~~~~~~~   98 (342)
T d2ovrb2          39 LK-VWSAVTGK-----CLRTLVGHTGGVWSSQMRDN--IIISGSTDRT-LKVWNAETGECIHTLYGHTS   98 (342)
T ss_dssp             EE-EEETTTCC-----EEEECCCCSSCEEEEEEETT--EEEEEETTSC-EEEEETTTTEEEEEECCCSS
T ss_pred             EE-EEECCCCC-----EEEEEeCCCCCEEEEEeCCC--ccccceeccc-ccccccccccceecccccce
Confidence            56 99998765     88999999999999999974  9999999999 99999988776655554433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.80  E-value=3.4e-08  Score=59.66  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCE--EEEEcCCCCEEEEeeCCCCcEEEEeeC-CCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTM--IATASSKGTLIRVWDTLKKVQLVELRR-GSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~--l~s~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~~~   76 (78)
                      +. +||+.+..     ....+. +...+..++|+|||+.  +++++.|+. |++||+.+++.+..+.. +..|..|
T Consensus       300 v~-~~d~~t~~-----~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         300 VT-SVTGLVGQ-----TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             EE-EEECCCCc-----EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECCCCCCCcEE
Confidence            45 67776654     566554 5567889999999984  468899999 99999999999999984 4555444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.80  E-value=1.5e-08  Score=59.84  Aligned_cols=60  Identities=13%  Similarity=0.069  Sum_probs=48.7

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCC--ccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAH--QSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h--~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++ +||+.+.+     .+++++.+  ...+.+++|+|||+++ ++++.++. |.+||+.+++.+..+..+
T Consensus        13 v~-v~D~~s~~-----~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~-v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_          13 LV-VIDTEKMA-----VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES-LVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EE-EEETTTTE-----EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTE-EEEEETTTCCEEEEEECC
T ss_pred             EE-EEECCCCe-----EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecC
Confidence            56 89998876     78778643  4557899999999987 46678898 999999999998887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.73  E-value=5e-08  Score=57.68  Aligned_cols=60  Identities=10%  Similarity=-0.047  Sum_probs=48.6

Q ss_pred             eeeEEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCCEEE-EEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGTMIA-TASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~~l~-s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++ +||+.+..     .+++++ .|...+.+++|+|||++++ +++.++. |.+||+.+++.+..+...
T Consensus        20 v~-v~D~~t~~-----~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~-v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_          20 LH-VVDVASDT-----VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-IYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             EE-EEETTTTE-----EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEESC
T ss_pred             EE-EEECCCCC-----EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc-EEEEeCccCeeeeeeccc
Confidence            56 89998775     788887 4566678999999999874 5567888 999999999988877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.70  E-value=5.5e-08  Score=58.18  Aligned_cols=64  Identities=16%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCC--EEEEEcCCCCEEEEeeCCCCcEEEEeeC-CCCCeE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGT--MIATASSKGTLIRVWDTLKKVQLVELRR-GSDPAT   75 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~--~l~s~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~~   75 (78)
                      +. +||..+..     ....+.. ...+.+++|+|||+  ++++++.|+. |.+||+++++.+.++.. +..|..
T Consensus       282 v~-v~d~~t~~-----~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~-i~v~D~~tg~~~~~i~~~G~~p~~  348 (355)
T d2bbkh_         282 VV-VLDAKTGE-----RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKT-LYIHDAESGEELRSVNQLGHGPQV  348 (355)
T ss_dssp             EE-EEETTTCC-----EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTE-EEEEETTTCCEEEEECCCCSSCCE
T ss_pred             EE-EEeCCCCc-----EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCE-EEEEECCCCCEEEEEeCcCCCccE
Confidence            45 77877664     6666653 34578999999998  4567788998 99999999999999974 455544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.67  E-value=1e-07  Score=59.34  Aligned_cols=60  Identities=10%  Similarity=0.093  Sum_probs=46.1

Q ss_pred             eeeEEEcccCCcCCCCCcEEe---------cCCccCEEEEEECCCCCEEEEE-----cCCCCEEEEeeCCCCcEEEEeeC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTI---------NAHQSELACLALNQTGTMIATA-----SSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~---------~~h~~~i~~v~fs~dg~~l~s~-----~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ++ +||+.+.+     ..+++         ..|...+..++|||||++++.+     +.++. |+|||.++++....+++
T Consensus       334 v~-vwd~~t~~-----~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~-i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         334 VA-VFDLKNLD-----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA-LVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             EE-EEETTCTT-----SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCE-EEEEETTTTEEEEEECC
T ss_pred             EE-EEECCCCC-----cCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCe-EEEEECCCCeEEEEECC
Confidence            67 99998876     33333         3456668899999999977542     46888 99999999998888876


Q ss_pred             C
Q psy1940          70 G   70 (78)
Q Consensus        70 ~   70 (78)
                      .
T Consensus       407 ~  407 (426)
T d1hzua2         407 P  407 (426)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=7.2e-08  Score=57.00  Aligned_cols=67  Identities=3%  Similarity=-0.016  Sum_probs=43.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEec--CCccCEEEEEECCCCCEEEEE-cCCCCEEEEeeCCCCc----EEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTIN--AHQSELACLALNQTGTMIATA-SSKGTLIRVWDTLKKV----QLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~--~h~~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~~~~----~~~~~~~~~~~~~~   76 (78)
                      ++ +|++....     ....++  .|.+.+..++|||||++|+++ ..|+. |++|++.+..    .......+..+..+
T Consensus        16 I~-v~~~~~~~-----~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~-i~~~~i~~~~~~~~~~~~~~~~~~p~~l   88 (333)
T d1ri6a_          16 IH-VWNLNHEG-----ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR-VLAYRIAPDDGALTFAAESALPGSLTHI   88 (333)
T ss_dssp             EE-EEEECTTS-----CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEECSSCCSEE
T ss_pred             EE-EEEEcCCC-----CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEeeecccCCCceEE
Confidence            45 88886543     333332  577889999999999999655 45788 9999987653    22333344445444


Q ss_pred             e
Q psy1940          77 Y   77 (78)
Q Consensus        77 ~   77 (78)
                      .
T Consensus        89 ~   89 (333)
T d1ri6a_          89 S   89 (333)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.53  E-value=1.7e-07  Score=57.07  Aligned_cols=65  Identities=14%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCE--EEEEcCCCCEEEEeeCCCCcEEEEeeCCCCCeEE
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTM--IATASSKGTLIRVWDTLKKVQLVELRRGSDPATL   76 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~--l~s~~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~   76 (78)
                      +. +||..+..     ...++. +...+.+++|+|||+.  +++...|+. |.+||..+++.+..++-+..|..|
T Consensus       296 v~-v~D~~t~~-----~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~~g~~P~~l  362 (368)
T d1mdah_         296 TS-SVTASVGQ-----TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELDKGPESL  362 (368)
T ss_dssp             EE-EEESSSCC-----EEECCE-EEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCCSCCCEE
T ss_pred             EE-EEECCCCc-----EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEECCCCCCEE
Confidence            44 67776654     555554 3356789999999973  467778898 999999999999999987777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=2.7e-08  Score=62.74  Aligned_cols=66  Identities=11%  Similarity=-0.151  Sum_probs=46.7

Q ss_pred             eeeeEEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEE-EEEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           3 YLQCSQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMI-ATASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         3 ~~~~i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l-~s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++. +||+.+.+......+.+...|.+.+.+.+|||||++| ++++.++. +++||..+++++..+..+
T Consensus        84 ~v~-~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~-v~i~d~~t~~~~~~~~~~  150 (432)
T d1qksa2          84 KVN-MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEPKKIQSTR  150 (432)
T ss_dssp             EEE-EEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCCEEEEEECC
T ss_pred             CEE-EEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCe-EEEEeCccccceeeeccC
Confidence            456 8998776522111222233566667778899999986 67888998 999999999988877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.33  E-value=2.4e-06  Score=51.33  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=44.1

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRRGS   71 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~~~   71 (78)
                      +||..+..     .+.++..+..+  .++|+|||++|+++.          .++. |.+||..+++.+..+..+.
T Consensus        51 v~D~~tg~-----~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~-v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          51 VLDAGSGS-----ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY-VEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             EEECCCCC-----EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceE-EEEEECCCCcEEEEEecCC
Confidence            66766654     77778766544  799999999999874          4577 9999999999887776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=7.2e-07  Score=53.18  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=42.7

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEc----------CCCCEEEEeeCCCCcEEEEeeC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATAS----------SKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~----------~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      +||..+..     .+.++..+..+  .++|||||++|++++          .|+. |++||+.+++.+..+..
T Consensus        32 v~D~~tg~-----~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~-v~v~D~~t~~~~~~~~~   96 (355)
T d2bbkh_          32 VIDGEAGR-----VIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDY-VEVFDPVTLLPTADIEL   96 (355)
T ss_dssp             EEETTTTE-----EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE-EEEECTTTCCEEEEEEE
T ss_pred             EEECCCCc-----EEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCE-EEEEECCCCCEEEEEec
Confidence            67877665     67777765444  699999999888653          4778 99999999998887754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.7e-05  Score=45.55  Aligned_cols=49  Identities=12%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             CccCEEEEEECCCCCEEEEEcC-CCCEEEEe--eCCCCc--EEEEeeCCCCCeEE
Q psy1940          27 HQSELACLALNQTGTMIATASS-KGTLIRVW--DTLKKV--QLVELRRGSDPATL   76 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~--d~~~~~--~~~~~~~~~~~~~~   76 (78)
                      +...+..++|+|||++|++++. ++. |++|  |..+|.  .+..++.+..|.-+
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~-v~v~~id~~tG~l~~~~~~~~g~~p~~v  327 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGEQGLLHEKGRYAVGQGPMWV  327 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCE-EEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCe-EEEEEEECCCCcEEEEEeccCCCCCcEE
Confidence            3455678999999998877754 577 9998  566775  45566666666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.86  E-value=2.6e-05  Score=47.15  Aligned_cols=60  Identities=3%  Similarity=-0.099  Sum_probs=43.8

Q ss_pred             eeeEEEcccCCcCCCCCcEEecCCcc-------CEEEEEECCCCCEEEEEc-CCCCEEEEeeCCCCcEEEEeeCC
Q psy1940           4 LQCSQDLSSTELSSSSSPVTINAHQS-------ELACLALNQTGTMIATAS-SKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus         4 ~~~i~d~~~~~~~~~~~~~~~~~h~~-------~i~~v~fs~dg~~l~s~~-~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ++ +||..+..     ....+..+..       ....++|+|||++|+.+. .++. +.+||+.+++.+..++.+
T Consensus        98 v~-v~D~~t~~-----~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~-v~~~d~~~~~~~~~~~~~  165 (368)
T d1mdah_          98 VE-VFDPVTFL-----PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA-AAGLSVPGASDDQLTKSA  165 (368)
T ss_dssp             EE-EECTTTCC-----EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC-EEEEEETTTEEEEEEECS
T ss_pred             EE-EEECCCCc-----EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcEeEEeecc
Confidence            56 78887664     5555543321       224689999999998876 4677 999999999988887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.82  E-value=3.2e-06  Score=52.78  Aligned_cols=64  Identities=11%  Similarity=0.107  Sum_probs=41.4

Q ss_pred             EEEcccCCcCCCCCcEEecCCccCEEEEEECCCCCEEEEEcC---------CCCEEEEeeCCCCcEEEEeeCCCC
Q psy1940           7 SQDLSSTELSSSSSPVTINAHQSELACLALNQTGTMIATASS---------KGTLIRVWDTLKKVQLVELRRGSD   72 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~~h~~~i~~v~fs~dg~~l~s~~~---------d~~~i~i~d~~~~~~~~~~~~~~~   72 (78)
                      +||+.++.........++..|...|.+++|||||++|+.++.         ++. +.+||+.++.. ..+..+.+
T Consensus        40 ~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~-~~l~d~~~~~~-~~l~~~~~  112 (470)
T d2bgra1          40 VFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDIYDLNKRQL-ITEERIPN  112 (470)
T ss_dssp             EEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEEEETTTTEE-CCSSCCCT
T ss_pred             EEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce-EEEEECCCCcc-cccccCCc
Confidence            678777651100011233455678999999999999998753         456 78999998764 33444433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.51  E-value=7.5e-05  Score=46.41  Aligned_cols=45  Identities=7%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             cCCccCEEEEEECCCCCEEE---EEcCCCCEEEEeeCCCCcEEEEeeCC
Q psy1940          25 NAHQSELACLALNQTGTMIA---TASSKGTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        25 ~~h~~~i~~v~fs~dg~~l~---s~~~d~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      ..|...+++++|||||++++   ++...-. +++|+..+++.+..++.+
T Consensus       412 ~~~~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             STTTBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEECC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEecc
Confidence            46788899999999999988   3344446 899999999999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.022  Score=32.03  Aligned_cols=43  Identities=9%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCC---CEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKG---TLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~---~~i~i~d~~~~~~   63 (78)
                      ..+.+..+...+.+-+|||||+.||-.....   . +.+.+...+..
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~-~~~~~~~~~~~   75 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSA-LVIQTLANGAV   75 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCE-EEEEETTTCCE
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcc-eeeeecccCce
Confidence            5555555667788899999999998654333   3 44456555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.017  Score=32.51  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=26.3

Q ss_pred             CCccCEEEEEECCCCCEEEEEcC---CCCEEEEeeCCCCcEE
Q psy1940          26 AHQSELACLALNQTGTMIATASS---KGTLIRVWDTLKKVQL   64 (78)
Q Consensus        26 ~h~~~i~~v~fs~dg~~l~s~~~---d~~~i~i~d~~~~~~~   64 (78)
                      .+........|||||+.|+-.+.   ... +.++|+..+...
T Consensus       211 ~~~~~~~~p~~SPDG~~i~f~s~~~~~~~-l~~~~~dg~~~~  251 (269)
T d2hqsa1         211 SSTFLDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRFKA  251 (269)
T ss_dssp             CCSSSCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCCEE
T ss_pred             ecCccccceEECCCCCEEEEEEcCCCCcE-EEEEECCCCCEE
Confidence            34555677899999999875443   235 778898766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.61  E-value=0.031  Score=31.37  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=29.7

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEc----CCC--CEEEEeeCCCCcEE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATAS----SKG--TLIRVWDTLKKVQL   64 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~----~d~--~~i~i~d~~~~~~~   64 (78)
                      ..+.+..+.+.+...+|||||+.||-..    .+.  . |.+.+..++...
T Consensus        32 ~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~-i~~~~~~~g~~~   81 (281)
T d1k32a2          32 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD-LYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE-EEEEETTTTEEE
T ss_pred             CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceE-EEEEEecCCceE
Confidence            4556666777788899999999998543    221  3 556677666543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.26  E-value=0.012  Score=37.30  Aligned_cols=40  Identities=15%  Similarity=0.065  Sum_probs=31.0

Q ss_pred             CCcEEecCCccCEEEEEECCCCCEEEE-EcCCCCEEEEeeCCC
Q psy1940          19 SSPVTINAHQSELACLALNQTGTMIAT-ASSKGTLIRVWDTLK   60 (78)
Q Consensus        19 ~~~~~~~~h~~~i~~v~fs~dg~~l~s-~~~d~~~i~i~d~~~   60 (78)
                      +..++++.++.| ..+.++|||+++++ +..+++ +.+||+.+
T Consensus       249 ~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~t-vsv~d~~k  289 (441)
T d1qnia2         249 EFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPT-VSVIAIDK  289 (441)
T ss_dssp             SSEEEECCBSSC-CCEEECTTSCEEEEECTTSSB-EEEEEGGG
T ss_pred             ceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCc-EEEEEeeh
Confidence            467777766554 78999999998754 577788 99999764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.59  E-value=0.057  Score=31.46  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ....+....+.+++++|++||+.+++...++. +..++..
T Consensus        59 ~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~-~~~~~~~   97 (302)
T d2p4oa1          59 NQQIHATVEGKVSGLAFTSNGDLVATGWNADS-IPVVSLV   97 (302)
T ss_dssp             CEEEEEECSSEEEEEEECTTSCEEEEEECTTS-CEEEEEE
T ss_pred             CEEEEEcCCCCcceEEEcCCCCeEEEecCCce-EEEEEec
Confidence            34445556677899999999998888877777 7776643

>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
domain: Glucosylceramidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.14  Score=27.61  Aligned_cols=50  Identities=16%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             CccCEEEEEE-CCCCCEEEEE----cCCCCEEEEeeCCCCcEEEEeeCCCCCeEEeC
Q psy1940          27 HQSELACLAL-NQTGTMIATA----SSKGTLIRVWDTLKKVQLVELRRGSDPATLYW   78 (78)
Q Consensus        27 h~~~i~~v~f-s~dg~~l~s~----~~d~~~i~i~d~~~~~~~~~~~~~~~~~~~~w   78 (78)
                      ....+..++| +|||+.++..    ..+.. +.|.|...+..-..++++ ...++.|
T Consensus        86 ~~~~L~~vAF~nPDgs~vlVv~N~s~~~~~-~~i~~~~~~~~~~~lpa~-Si~T~vw  140 (143)
T d2nt0a1          86 QKNDLDAVALMHPDGSAVVVVLNRSSKDVP-LTIKDPAVGFLETISPGY-SIHTYLW  140 (143)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEEECSSSCEE-EEEEETTTEEEEEEECTT-EEEEEEE
T ss_pred             CcCcceEEEEECCCCCEEEEEEeCCCCCeE-EEEEeCCCCEEEEEeCCC-EEEEEEE
Confidence            4567889999 9999977665    23334 777777666655666643 4455655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=93.83  E-value=0.19  Score=29.14  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=29.8

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLK   60 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~   60 (78)
                      .+.++.... .+..++++|||+.+++...++. |..+|...
T Consensus        20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~-I~~i~p~g   58 (302)
T d2p4oa1          20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGE-IVSITPDG   58 (302)
T ss_dssp             EEEEECTTC-CEEEEEECTTSCEEEEETTTTE-EEEECTTC
T ss_pred             EEEECCCCC-CcCCEEECCCCCEEEEeCCCCE-EEEEeCCC
Confidence            445554322 5788999999999999998998 88888653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=93.60  E-value=0.24  Score=29.64  Aligned_cols=32  Identities=13%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCC
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTL   59 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~   59 (78)
                      ...+++++|+|||+++++++.....|.+|+..
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~  175 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKL  175 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEcc
Confidence            33578999999999888886543228888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.26  Score=30.65  Aligned_cols=43  Identities=9%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             CccCEEEEEECCCCCEEEEEcCC---CCEEEEeeCCCCcEEEEeeCC
Q psy1940          27 HQSELACLALNQTGTMIATASSK---GTLIRVWDTLKKVQLVELRRG   70 (78)
Q Consensus        27 h~~~i~~v~fs~dg~~l~s~~~d---~~~i~i~d~~~~~~~~~~~~~   70 (78)
                      +.....++.|||+|++++.....   -. +.+++..+++.+..++..
T Consensus       408 ~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         408 ENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             SSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEECC
T ss_pred             CCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEcCC
Confidence            44456799999999999854433   45 888898899998888754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=92.27  E-value=0.57  Score=29.40  Aligned_cols=62  Identities=6%  Similarity=-0.016  Sum_probs=38.6

Q ss_pred             EEEcccCCcCCCCCcEEec-CCccCEEEEEECCCCC--EEEEEcCCCC----------------EEEEeeCCCCcEEEEe
Q psy1940           7 SQDLSSTELSSSSSPVTIN-AHQSELACLALNQTGT--MIATASSKGT----------------LIRVWDTLKKVQLVEL   67 (78)
Q Consensus         7 i~d~~~~~~~~~~~~~~~~-~h~~~i~~v~fs~dg~--~l~s~~~d~~----------------~i~i~d~~~~~~~~~~   67 (78)
                      ++|+...+     +.+.+. .+...+..++|+|||+  +++..+++..                .+..+|..+.+...++
T Consensus        98 vIDl~t~k-----~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          98 RIRLDIMK-----TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             EEETTTTE-----EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             EEECCCCc-----EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            66776654     445444 3566789999999998  4444444321                0355788887777666


Q ss_pred             eCCCCC
Q psy1940          68 RRGSDP   73 (78)
Q Consensus        68 ~~~~~~   73 (78)
                      .....+
T Consensus       173 ~v~~~p  178 (441)
T d1qnia2         173 IVDGNL  178 (441)
T ss_dssp             EESSCC
T ss_pred             ecCCCc
Confidence            644443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=92.27  E-value=0.44  Score=27.93  Aligned_cols=39  Identities=8%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             CcEEecCCccCEEEEEECCCCC-EEEEEcCCCCEEEEeeCC
Q psy1940          20 SPVTINAHQSELACLALNQTGT-MIATASSKGTLIRVWDTL   59 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~-~l~s~~~d~~~i~i~d~~   59 (78)
                      ....+........+++|.||++ .++|.+.++. |..+|+.
T Consensus       259 ~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~-i~~~~~~  298 (314)
T d1pjxa_         259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA-VWKFEWQ  298 (314)
T ss_dssp             CSEEEECSSSCEEEEEECTTSSEEEEEETTTTE-EEEEECS
T ss_pred             EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCc-EEEEECC
Confidence            4555665556778999999997 4566677777 7777754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.07  E-value=0.23  Score=30.41  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             EEEEEECCCCCEEEEE----cCCCCEEEEeeCCCCcEEE
Q psy1940          31 LACLALNQTGTMIATA----SSKGTLIRVWDTLKKVQLV   65 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~----~~d~~~i~i~d~~~~~~~~   65 (78)
                      +...++||||++++-+    +.|...++++|+.+|+.+.
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~  165 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP  165 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence            3456889999988844    3333339999999998663

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=91.19  E-value=0.57  Score=27.91  Aligned_cols=34  Identities=12%  Similarity=0.069  Sum_probs=25.9

Q ss_pred             ccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCCCCc
Q psy1940          28 QSELACLALNQTGTMIATASS-KGTLIRVWDTLKKV   62 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~~~~   62 (78)
                      ......++|+|+|++++...+ ++. |.+||...+.
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~  226 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPAT  226 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTT
T ss_pred             CCceEEEEECCCCceEEEeccCCCE-EEEEEecCCC
Confidence            456678999999998876655 555 9999887653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.81  E-value=0.57  Score=27.40  Aligned_cols=46  Identities=11%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeCC-CCCeEEe
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRRG-SDPATLY   77 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~~~~   77 (78)
                      ...+++..+|+..++....+. |.+||...+..+..+... ..+.+++
T Consensus       228 pdGiavD~~GnlyVa~~~~g~-I~~~dp~~g~~~~~i~~p~~~~t~~a  274 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSH-IEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTE-EEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCE-EEEEeCCCCEEEEEEECCCCCEEEEE
Confidence            457899999998888777888 999999888776666543 4455554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.70  E-value=1.3  Score=27.42  Aligned_cols=43  Identities=12%  Similarity=0.041  Sum_probs=32.2

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcE
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQ   63 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~   63 (78)
                      .+.++...-...++++|.|||+.|++...+|. |++.+..++..
T Consensus        18 ~~~~ia~~L~~P~~la~~pdg~llVter~~G~-i~~v~~~~g~~   60 (450)
T d1crua_          18 DKKVILSNLNKPHALLWGPDNQIWLTERATGK-ILRVNPESGSV   60 (450)
T ss_dssp             CEEEEECCCSSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCE
T ss_pred             EEEEEECCCCCceEEEEeCCCeEEEEEecCCE-EEEEECCCCcE
Confidence            34445444456689999999999988766888 99998777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.21  E-value=0.92  Score=25.74  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             CEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          30 ELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        30 ~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ....|+++++|+.+++-...+. |++||.. |..+..+.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~r-I~v~d~~-G~~~~~~~   60 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHR-IQIFDKE-GRFKFQFG   60 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTE-EEEECTT-SCEEEEEC
T ss_pred             CccEEEEcCCCCEEEEECCCCE-EEEEeCC-CCEEEEec
Confidence            4578999999998887777777 9999964 77766664

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.23  Score=30.94  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=26.9

Q ss_pred             ccCEEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEee
Q psy1940          28 QSELACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELR   68 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~   68 (78)
                      ...+....|||||+.+|-.. ++. +.+.+..++..++...
T Consensus       113 ~~~l~~~~wSPDG~~iafv~-~~n-l~~~~~~~~~~~~lt~  151 (465)
T d1xfda1         113 NAKLQYAGWGPKGQQLIFIF-ENN-IYYCAHVGKQAIRVVS  151 (465)
T ss_dssp             SCCCSBCCBCSSTTCEEEEE-TTE-EEEESSSSSCCEEEEC
T ss_pred             ccccceeeeccCCceEEEEe-cce-EEEEecCCCceEEEec
Confidence            44556688999999998766 445 7777776665554443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.58  E-value=0.89  Score=28.94  Aligned_cols=30  Identities=13%  Similarity=0.293  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .|..+++++.|+. ++.+|.++|+.+-+++-
T Consensus       487 agglVF~G~~dg~-l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         487 AGNVVFQGTADGR-LVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCe-EEEEECCCCcEeEEEEC
Confidence            5778888999999 99999999999988764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.77  E-value=1.5  Score=26.21  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=24.3

Q ss_pred             ccCEEEEEECCCCCEEEEE-cCCCCEEEEeeCCCC
Q psy1940          28 QSELACLALNQTGTMIATA-SSKGTLIRVWDTLKK   61 (78)
Q Consensus        28 ~~~i~~v~fs~dg~~l~s~-~~d~~~i~i~d~~~~   61 (78)
                      -...+.|+++||+++|+.+ ...+. |++|+....
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~-i~~y~~~~~  238 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHK-IHVYEKHAN  238 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT
T ss_pred             CCccceeEECCCCCEEEEEeCCCCe-EEEEEeCCC
Confidence            3456899999999877665 45556 999887643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.78  E-value=1.2  Score=28.38  Aligned_cols=31  Identities=16%  Similarity=0.398  Sum_probs=26.8

Q ss_pred             CCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          38 QTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        38 ~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      -.|..+++++.|+. ++-+|.++|+.+-+++-
T Consensus       495 tagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         495 TAGNLVFTGTGDGY-FKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             ETTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred             EcCCeEEEeCCCCe-EEEEECCCCcEeEEEEC
Confidence            35678888999999 99999999999988764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.35  E-value=1.5  Score=28.19  Aligned_cols=30  Identities=13%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .|..++.++.|+. ++.+|.++|+.+-+++-
T Consensus       483 agglVF~G~~Dg~-l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         483 AGDLVFYGTLDGY-LKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCe-EEEEECCCCcEeeEEEC
Confidence            5678888999999 99999999999988764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=80.78  E-value=1.7  Score=27.52  Aligned_cols=30  Identities=13%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          39 TGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        39 dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      .|..+++++.|+. ++.+|.++|+.+-+++-
T Consensus       468 agglVF~G~~dg~-l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         468 AGNLVFQGTAAGQ-MHAYSADKGEALWQFEA  497 (560)
T ss_dssp             TTTEEEEECTTSE-EEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCc-EEEEECCCCcEeEEEEC
Confidence            4667888999999 99999999999988764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.35  E-value=2.1  Score=27.06  Aligned_cols=38  Identities=13%  Similarity=0.053  Sum_probs=26.7

Q ss_pred             CcEEecCCccCEEEEEECCCCCEEEEEcC-CCCEEEEeeCC
Q psy1940          20 SPVTINAHQSELACLALNQTGTMIATASS-KGTLIRVWDTL   59 (78)
Q Consensus        20 ~~~~~~~h~~~i~~v~fs~dg~~l~s~~~-d~~~i~i~d~~   59 (78)
                      ..+.++..++ .+.+..+|||+++++++. +.+ +.|+|++
T Consensus       267 v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs~t-VSViD~~  305 (459)
T d1fwxa2         267 FTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPT-VTVLDVT  305 (459)
T ss_dssp             SEEEEEEESS-CCCEEECTTSSEEEEECTTSSB-EEEEEGG
T ss_pred             eeEEEecCCC-CCceEECCCCCEEEEeCCcCCc-EEEEEeh
Confidence            4444543333 367899999999887654 556 9999986

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.24  E-value=2.5  Score=24.45  Aligned_cols=37  Identities=5%  Similarity=0.188  Sum_probs=30.3

Q ss_pred             EEEEEECCCCCEEEEEcCCCCEEEEeeCCCCcEEEEeeC
Q psy1940          31 LACLALNQTGTMIATASSKGTLIRVWDTLKKVQLVELRR   69 (78)
Q Consensus        31 i~~v~fs~dg~~l~s~~~d~~~i~i~d~~~~~~~~~~~~   69 (78)
                      ...+++.++|+..++....+. |.++|. .|+.+..+.-
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~-V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred             eeeeeEcCCCCEEEEEcCCCE-EEEECC-CCcEEEEEeC
Confidence            457999999998888888888 999995 6888877753