Psyllid ID: psy1957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MDLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Secondary Structure (PSIPRED)
ccccEEEEEHHHHHHHHHHHHHccHHHHHHHHccEEEEEEcccEEEEEEccEEEEEEHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHHHHHHHHHHHHHcHHHHHHHHccEEEEEEcccEEEEEcccEEEEEEHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEcccccEEEccEcc
Coil and Loop (DISEMBL)
mdlrreikLSSVRDLRGEIEKQKSSQLCEVFRklsfvgcatpcmcliqHETKLYIVNVTYVLEELFYQLMLhdfgnfgvfrfenpvSIKELLLISldlpdsgwdpsngskseVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Flexible Loop (DISEMBL)
mdlrreiklssvrdlrgeiekqkssqlcEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Low Complexity Region (SEG)
MDLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Disordered region (IsUnstruct)
*************************QLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLP********************FLLSRADMLTDYFSMEIDT***********
Disordered Region (DISOPRED)
**LRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLD***********SKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Disordered Region (DISEMBL)
MDLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWD************ASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Disordered Region (DISPRO)
*DLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
P40692	756	DNA mismatch repair prote	no	N/A	0.979	0.193	0.472	5e-34
Q9JK91	760	DNA mismatch repair prote	yes	N/A	0.979	0.192	0.472	8e-34
P97679	757	DNA mismatch repair prote	yes	N/A	0.979	0.192	0.458	5e-33
Q54KD8	884	DNA mismatch repair prote	yes	N/A	0.953	0.160	0.373	1e-22
Q9P7W6	684	Putative MutL protein hom	yes	N/A	0.872	0.190	0.328	2e-13
P38920	769	DNA mismatch repair prote	yes	N/A	0.859	0.166	0.288	3e-09

>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct: 498 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 557

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 558 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 617

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 618 KAEMLADYFSLEIDEEGNLIGLPLLI 643

Heterodimerizes with PMS2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with MLH3 to form MutL gamma which plays a role in meiosis.
Homo sapiens (taxid: 9606)

>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2

 Score =  142 bits (358), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 96/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI ++    L E+ R  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 502 RRIINLTSVLSLQEEISERCHETLREMLRNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 561

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 562 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEDDGPKEGLAEYIVEFLKK 621

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 622 KAEMLADYFSVEIDEEGNLIGLPLLI 647

Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis.

Mus musculus (taxid: 10090)

>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1

 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 93/146 (63%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI  +    L E+ R  +FVGC  P   L QH+TKLY++N T + E
Sbjct: 500 RRIINLTSVLSLQEEINDRGHETLREMLRNHTFVGCVNPQWALAQHQTKLYLLNTTKLSE 559

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +  +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 560 ELFYQILIYDFANFGVLRLPEPAPLFDFAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A ML DYFS+EID +  L  LPLL+
Sbjct: 620 KAKMLADYFSVEIDEEGNLIGLPLLI 645

Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis.

Rattus norvegicus (taxid: 10116)

>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 85/142 (59%)

Query: 5   REIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEE 64
           ++++L+S++ L  E +      L E F    FVGC      L+Q   KLY++N+  + +E
Sbjct: 619 KQVELTSIKTLISEFQSNVHDGLKEFFNDCVFVGCLDHSYALVQFGKKLYLINLENITKE 678

Query: 65  LFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSR 124
           LFYQL L  F +F   +F   +SI  LLL+SLD P SGW  S+G K ++A+  ++ L+S+
Sbjct: 679 LFYQLSLLRFSDFDSIKFSQSLSIYSLLLVSLDSPLSGWMESDGPKDKIADYLTKLLISK 738

Query: 125 ADMLTDYFSMEIDTQARLRTLP 146
            ++L +YFS+EI+    L  +P
Sbjct: 739 KELLNEYFSIEINEDGELVGIP 760

Heterodimerizes with pms1 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (msh2-msh6) or MutS beta (msh2-msh3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of rfc and pcna is sufficient to activate endonuclease activity of pms1. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease exo1 to degrade the strand containing the mismatch.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 16/146 (10%)

Query: 7   IKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVG--CATPCMCLIQHETKLYIVNVTYVLEE 64
           I L S++ L+ ++          +  +  +VG  C T  +  +QH   LY+V+   +   
Sbjct: 446 IDLESIKSLQKQVINSMHVLATNILTEHKYVGLVCPTRRIAAVQHNIGLYVVDYGKLSYH 505

Query: 65  LFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNG--SKSEVAESASQFLL 122
           LFYQ+ L +FGN+G F  E P+SI +L  I            NG   KSE +E  ++ L+
Sbjct: 506 LFYQICLTEFGNYGEFVLETPLSISDLFEI-----------VNGDEDKSE-SEKFTRLLV 553

Query: 123 SRADMLTDYFSMEIDTQARLRTLPLL 148
           SR DML DYFS+ + +   L  +P+L
Sbjct: 554 SRRDMLKDYFSISVTSGGLLTAVPML 579

This protein is involved in the repair of mismatches in DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATP--CMCLIQHETKLYIVNVTYV 61
           R  + L+S++ LR +++     +L ++F  L++VG       +  IQH+ KL++++   V
Sbjct: 506 RVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 565

Query: 62  LEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFL 121
             ELFYQ+ L DF NFG    ++     +++L +L    S +D  N   S+  E     +
Sbjct: 566 CYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL---LSEFDELNDDASK--EKIISKI 620

Query: 122 LSRADMLTDYFSMEI 136
              + ML +Y+S+E+
Sbjct: 621 WDMSSMLNEYYSIEL 635

Required for DNA mismatch repair (MMR), correcting base-base mismatches and insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of different MutL heterodimers that form a ternary complex with the MutS heterodimers, which initially recognize the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in maintaining the genetic stability of simple sequence repeats, the repair of heteroduplex sites present in meiotic recombination intermediates, and the promotion of meiotic crossing-over.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
328697305	677	PREDICTED: DNA mismatch repair protein M	0.979	0.215	0.489	3e-33
291399797	758	PREDICTED: MutL protein homolog 1 [Oryct	0.979	0.192	0.479	4e-33
348575486	758	PREDICTED: DNA mismatch repair protein M	0.979	0.192	0.472	5e-33
291231519	790	PREDICTED: MutL protein homolog 1-like [	0.979	0.184	0.465	8e-33
355702650	757	mutL-like protein 1, colon cancer, nonpo	0.979	0.192	0.472	1e-32
50732924	757	PREDICTED: DNA mismatch repair protein M	0.979	0.192	0.465	2e-32
354489134	751	PREDICTED: DNA mismatch repair protein M	0.979	0.194	0.472	2e-32
62897179	756	MutL protein homolog 1 variant [Homo sap	0.979	0.193	0.472	2e-32
395517352	596	PREDICTED: DNA mismatch repair protein M	0.979	0.244	0.452	2e-32
7595954	760	MutL homolog 1 protein [Mus musculus]	0.979	0.192	0.472	2e-32

>gi|328697305|ref|XP_001945011.2| PREDICTED: DNA mismatch repair protein Mlh1-like [Acyrthosiphon pisum]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 103/147 (70%), Gaps = 1/147 (0%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RREIKL+SV  LR EIE + S  L  +F+   +VG A+P   L QH+T LYI N   VL+
Sbjct: 422 RREIKLTSVLSLRKEIENRCSDTLQTIFQNHKYVGAASPTWSLFQHDTNLYICNSNNVLQ 481

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPS-NGSKSEVAESASQFLL 122
           E+FYQ+M+++FGNFGV +F N +SI EL++I+L+L +SG+  + +  K E+A  A++ L 
Sbjct: 482 EMFYQIMVYEFGNFGVIKFSNALSIYELIMIALELSESGYQGNEDKPKEELAHDATEILT 541

Query: 123 SRADMLTDYFSMEIDTQARLRTLPLLV 149
           SR  ML DYFS+EID  A + ++PLL+
Sbjct: 542 SRTLMLNDYFSIEIDNDANILSIPLLL 568

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291399797|ref|XP_002716213.1| PREDICTED: MutL protein homolog 1 [Oryctolagus cuniculus]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 96/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  LR EI ++    L E+ R  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 500 RRIINLTSVLSLREEINERGHETLREMLRDSSFVGCVNPQWALAQHQTKLYLLNTTKLSE 559

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 560 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 620 KAEMLADYFSLEIDEEGNLTGLPLLI 645

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348575486|ref|XP_003473519.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cavia porcellus]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 97/146 (66%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI ++    L E+F+  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 500 RRIINLTSVLSLQEEISERGHETLREMFQNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 559

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 560 ELFYQVLIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 620 KAEMLADYFSLEIDEEGNLNGLPLLI 645

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291231519|ref|XP_002735708.1| PREDICTED: MutL protein homolog 1-like [Saccoglossus kowalevskii]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 95/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RREI L+SV  L+ EIE+     L ++F+  +FVGC  P + L+QH TKLY+VN   + +
Sbjct: 532 RREITLTSVLTLQKEIEQNMHKGLRDMFKNHTFVGCVNPELALMQHHTKLYLVNTAKISQ 591

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           E FYQ  ++DFGNFG  R   P  + EL +I+LDL +SGW  S+G K ++ +    F  S
Sbjct: 592 EFFYQQFMYDFGNFGFLRLSTPAPLYELAMIALDLEESGWSESDGPKEDLGQYIVDFFKS 651

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           + +ML DYFSME+D   +L TLPLL+
Sbjct: 652 KKEMLLDYFSMEVDEDGQLCTLPLLL 677

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|355702650|gb|AES02002.1| mutL-like protein 1, colon cancer, nonpolyposis type 2 [Mustela putorius furo]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 96/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI  +    L E+ +  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 500 RRIINLTSVLSLQEEINARGHETLREMLQNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 559

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 560 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+MLTDYFS+EID +  L  LPLL+
Sbjct: 620 KAEMLTDYFSLEIDEEGNLTGLPLLI 645

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|50732924|ref|XP_418828.1| PREDICTED: DNA mismatch repair protein Mlh1 [Gallus gallus]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 95/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI  Q    L E+ R  SFVGC +P   L+QH TKLY++N T + +
Sbjct: 499 RRIINLTSVLTLQEEISNQSHESLQEMLRDHSFVGCVSPQWALVQHRTKLYLLNTTKLSQ 558

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + EL +++L+ P+SGW   +G K  +AE   +FL  
Sbjct: 559 ELFYQILIYDFANFGVLRLSEPAPLYELAMLALEDPESGWTEEDGPKEGLAEYIVEFLKK 618

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           + +ML DYFS+EID +  L  LPLL+
Sbjct: 619 KTEMLKDYFSLEIDEEGNLTGLPLLI 644

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354489134|ref|XP_003506719.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Cricetulus griseus]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 96/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI ++    L E+ R  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 493 RRIINLTSVLSLQEEINERGHETLREMLRNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 552

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 553 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 612

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 613 KAEMLADYFSLEIDEEGNLIGLPLLI 638

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62897179|dbj|BAD96530.1| MutL protein homolog 1 variant [Homo sapiens]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct: 498 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNATKLSE 557

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 558 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 617

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 618 KAEMLADYFSLEIDEEGNLTGLPLLI 643

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395517352|ref|XP_003762841.1| PREDICTED: DNA mismatch repair protein Mlh1 [Sarcophilus harrisii]

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/146 (45%), Positives = 98/146 (67%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR +KL+SV  L+ EI ++    L E+ R  SFVGC TP   L Q++TKLY+++ T + E
Sbjct: 343 RRVVKLTSVLTLQEEISERGHEALQEMLRNHSFVGCVTPQWALAQYQTKLYLLDTTKLSE 402

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++L+ P+SGW   +G K  +AE   +FL  
Sbjct: 403 ELFYQILIYDFANFGVLRLSEPAPLYDLAMLALEHPESGWTEEDGPKEGLAEYIVEFLKK 462

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  +  LPLL+
Sbjct: 463 KAEMLADYFSLEIDEEGNVTGLPLLI 488

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|7595954|gb|AAF64514.1|AF250844_1 MutL homolog 1 protein [Mus musculus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 96/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI ++    L E+ R  SFVGC  P   L QH+TKLY++N T + E
Sbjct: 502 RRIINLTSVLSLQEEISERCHETLREILRNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 561

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 562 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEDDGPKEGLAEYIVEFLKK 621

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 622 KAEMLADYFSVEIDEEGNLIGLPLLI 647

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
UNIPROTKB|B7Z821	460	MLH1 "cDNA FLJ55289, highly si	0.979	0.317	0.472	2.3e-32
UNIPROTKB|E9PCU2	658	MLH1 "DNA mismatch repair prot	0.979	0.221	0.472	1.2e-31
UNIPROTKB|E1BQE0	757	MLH1 "Uncharacterized protein"	0.979	0.192	0.465	1.5e-31
UNIPROTKB|P40692	756	MLH1 "DNA mismatch repair prot	0.979	0.193	0.472	1.9e-31
UNIPROTKB|E2RBM6	757	MLH1 "Uncharacterized protein"	0.979	0.192	0.472	1.9e-31
MGI|MGI:101938	760	Mlh1 "mutL homolog 1 (E. coli)	0.979	0.192	0.472	1.9e-31
ZFIN|ZDB-GENE-040426-1600	725	mlh1 "mutL homolog 1, colon ca	0.979	0.201	0.445	2.1e-31
UNIPROTKB|I3LT92	687	MLH1 "Uncharacterized protein"	0.979	0.212	0.465	3.8e-31
UNIPROTKB|F1MPG0	758	MLH1 "Uncharacterized protein"	0.979	0.192	0.465	5.1e-31
RGD|620937	757	Mlh1 "mutL homolog 1, colon ca	0.979	0.192	0.458	3.7e-30

UNIPROTKB|B7Z821 MLH1 "cDNA FLJ55289, highly similar to DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   257 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 316

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   317 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 376

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   377 KAEMLADYFSLEIDEEGNLIGLPLLI 402

GO:0005524 "ATP binding" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

UNIPROTKB|E9PCU2 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   400 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 459

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   460 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 519

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   520 KAEMLADYFSLEIDEEGNLIGLPLLI 545

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

UNIPROTKB|E1BQE0 MLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 68/146 (46%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI  Q    L E+ R  SFVGC +P   L+QH TKLY++N T + +
Sbjct:   499 RRIINLTSVLTLQEEISNQSHESLQEMLRDHSFVGCVSPQWALVQHRTKLYLLNTTKLSQ 558

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + EL +++L+ P+SGW   +G K  +AE   +FL  
Sbjct:   559 ELFYQILIYDFANFGVLRLSEPAPLYELAMLALEDPESGWTEEDGPKEGLAEYIVEFLKK 618

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             + +ML DYFS+EID +  L  LPLL+
Sbjct:   619 KTEMLKDYFSLEIDEEGNLTGLPLLI 644

GO:0005524 "ATP binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

UNIPROTKB|P40692 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   498 RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 557

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   558 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 617

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   618 KAEMLADYFSLEIDEEGNLIGLPLLI 643

GO:0005524 "ATP binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IBA

GO:0005712 "chiasma" evidence=IBA

GO:0006298 "mismatch repair" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IC

GO:0032407 "MutSalpha complex binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IBA

UNIPROTKB|E2RBM6 MLH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI ++    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   499 RRIINLTSVLSLQEEINERGHETLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 558

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + EL +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   559 ELFYQILIYDFANFGVLRLSEPAPLFELAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 618

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   619 KAEMLADYFSLEIDEEGNLIGLPLLI 644

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:101938 Mlh1 "mutL homolog 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 354 (129.7 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 69/146 (47%), Positives = 96/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI ++    L E+ R  SFVGC  P   L QH+TKLY++N T + E
Sbjct:   502 RRIINLTSVLSLQEEISERCHETLREMLRNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 561

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   562 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEDDGPKEGLAEYIVEFLKK 621

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   622 KAEMLADYFSVEIDEEGNLIGLPLLI 647

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IMP

GO:0000793 "condensed chromosome" evidence=IDA;IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0000795 "synaptonemal complex" evidence=ISS;IDA

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=IGI

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IDA

GO:0005712 "chiasma" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0006298 "mismatch repair" evidence=ISO;IDA;IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IMP

GO:0007126 "meiosis" evidence=IDA;TAS

GO:0007129 "synapsis" evidence=IMP

GO:0007131 "reciprocal meiotic recombination" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IMP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IMP

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IMP

GO:0016887 "ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=ISO;IGI

GO:0032389 "MutLalpha complex" evidence=IDA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0043060 "meiotic metaphase I plate congression" evidence=IMP

GO:0043566 "structure-specific DNA binding" evidence=IDA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

GO:0045190 "isotype switching" evidence=IMP

GO:0045950 "negative regulation of mitotic recombination" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IMP

ZFIN|ZDB-GENE-040426-1600 mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 353 (129.3 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 65/146 (44%), Positives = 100/146 (68%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR +KL+S+++LR +IE Q    L E+ +  SFVG  +P   L+QH+TKLY++N T + +
Sbjct:   473 RRIVKLTSIKELRDQIELQTHKGLQELLQNHSFVGSVSPQWTLVQHQTKLYLLNTTKLSQ 532

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DFGNFGV R  NP  + +L +++LD  +SGW   +G K  +A+    FL  
Sbjct:   533 ELFYQILVYDFGNFGVLRLSNPAPLYDLAMLALDSEESGWTEEDGPKEGLAQYIVDFLKQ 592

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML +YFS+EID +  L  LP+L+
Sbjct:   593 KAEMLEEYFSLEIDAEGNLTGLPMLL 618

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA;IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0000795 "synaptonemal complex" evidence=IBA

GO:0005712 "chiasma" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0007141 "male meiosis I" evidence=IMP

GO:0043060 "meiotic metaphase I plate congression" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0051026 "chiasma assembly" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

UNIPROTKB|I3LT92 MLH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 350 (128.3 bits), Expect = 3.8e-31, P = 3.8e-31
 Identities = 68/146 (46%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI ++    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   429 RRIINLTSVLTLQEEINERGHETLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 488

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   489 ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 548

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   549 KAEMLADYFSLEIDEEGNLVGLPLLI 574

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1MPG0 MLH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 5.1e-31, P = 5.1e-31
 Identities = 68/146 (46%), Positives = 95/146 (65%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI ++    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct:   500 RRIINLTSVLSLQEEINERGHETLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTRLSE 559

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   560 ELFYQILVYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A+ML DYFS+EID +  L  LPLL+
Sbjct:   620 KAEMLADYFSLEIDEEGNLVGLPLLI 645

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|620937 Mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 342 (125.4 bits), Expect = 3.7e-30, P = 3.7e-30
 Identities = 67/146 (45%), Positives = 93/146 (63%)

Query:     4 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
             RR I L+SV  L+ EI  +    L E+ R  +FVGC  P   L QH+TKLY++N T + E
Sbjct:   500 RRIINLTSVLSLQEEINDRGHETLREMLRNHTFVGCVNPQWALAQHQTKLYLLNTTKLSE 559

Query:    64 ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
             ELFYQ++++DF NFGV R   P  + +  +++LD P+SGW   +G K  +AE   +FL  
Sbjct:   560 ELFYQILIYDFANFGVLRLPEPAPLFDFAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 619

Query:   124 RADMLTDYFSMEIDTQARLRTLPLLV 149
             +A ML DYFS+EID +  L  LPLL+
Sbjct:   620 KAKMLADYFSVEIDEEGNLIGLPLLI 645

GO:0000239 "pachytene" evidence=IEA;ISO

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA;ISO

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA;ISO

GO:0000793 "condensed chromosome" evidence=ISO

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0000795 "synaptonemal complex" evidence=IEA;ISO;IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001673 "male germ cell nucleus" evidence=IEA;ISO

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=ISO

GO:0005712 "chiasma" evidence=IEA;ISO;IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006281 "DNA repair" evidence=ISO

GO:0006298 "mismatch repair" evidence=IEA;ISO;IBA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007060 "male meiosis chromosome segregation" evidence=IEA;ISO

GO:0007126 "meiosis" evidence=ISO

GO:0007131 "reciprocal meiotic recombination" evidence=ISO;IBA

GO:0007140 "male meiosis" evidence=ISO

GO:0007283 "spermatogenesis" evidence=IEA;IEP;ISO

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA;ISO

GO:0009636 "response to toxic substance" evidence=IEP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA;ISO;IBA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISO

GO:0016887 "ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA;ISO

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IEA;ISO;IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IEA;ISO;IBA

GO:0042493 "response to drug" evidence=IEP

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA;ISO

GO:0043566 "structure-specific DNA binding" evidence=ISO

GO:0045132 "meiotic chromosome segregation" evidence=ISO

GO:0045190 "isotype switching" evidence=IEA;ISO

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA;ISO

GO:0048477 "oogenesis" evidence=IEA;ISO

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA;ISO

GO:0071407 "cellular response to organic cyclic compound" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG1979|consensus	694		100.0
PF08676	144	MutL_C: MutL C terminal dimerisation domain; Inter	97.42
COG0323	638	MutL DNA mismatch repair enzyme (predicted ATPase)	97.23
smart00853	136	MutL_C MutL C terminal dimerisation domain. MutL a	97.16
PRK00095	617	mutL DNA mismatch repair protein; Reviewed	96.25

>KOG1979|consensus

Probab=100.00  E-value=7.5e-48  Score=339.95  Aligned_cols=146  Identities=42%  Similarity=0.766  Sum_probs=143.0

Q ss_pred             eee-eeechHHHHHHHHHHhcChhHHHHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCCeecc
Q psy1957           4 RRE-IKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF   82 (149)
Q Consensus         4 ~~~-~~L~Sv~~Lr~ev~~~~~~~L~~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~l   82 (149)
                      +|+ ++|+||++||++|.+++|..||++|+||+||||||+.++||||+|+||+||+..+++|+|||+.|++|||||.+++
T Consensus       442 ~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l  521 (694)
T KOG1979|consen  442 PRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRL  521 (694)
T ss_pred             chhccchhhHHHHHHHHHhhccHHHHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeec
Confidence            344 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeeccccC
Q psy1957          83 ENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV  149 (149)
Q Consensus        83 ~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~ll  149 (149)
                      ++|+|+.||+++++++++.||+++|+.|+.+|+.+++.|.+||+||.|||||+||++|.|.+||+|+
T Consensus       522 ~~p~~l~el~~l~l~~e~~~~~~~d~~ke~~~~~~~e~l~~ka~ml~dYFsi~i~e~g~l~~lP~L~  588 (694)
T KOG1979|consen  522 SEPLPLSELLMLALESEEPGWTADDGFKEKIARFAAEKLLEKADMLHDYFSIEIDEEGLLTGLPSLL  588 (694)
T ss_pred             CCCccHHHHHHHhccCccCCCCccchhHHHHHHHHHHHHhhhHHHHhhheEEEEccCCceecCchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999985

>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []

Probab=97.42  E-value=0.0013  Score=48.78  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=67.5

Q ss_pred             eEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCC-CeecccCCCCHHHHHHHhhcCCCCCCCCCCCChhHH
Q psy1957          35 SFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNF-GVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEV  113 (149)
Q Consensus        35 ~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf-~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~l  113 (149)
                      .++|.++.++.++|.+..||++|-.+.-+-.-|.....++.+- ..-.|-.|+.+ +                      +
T Consensus         4 ~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~-~----------------------l   60 (144)
T PF08676_consen    4 KVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIEL-E----------------------L   60 (144)
T ss_dssp             EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEE-E-----------------------
T ss_pred             eeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccC-C----------------------C
Confidence            5899999999999999999999999999999999999998764 55555556543 1                      1


Q ss_pred             HHHHHHHHHhHHHhhhcc-ceEEEccCC--eeeeccccC
Q psy1957         114 AESASQFLLSRADMLTDY-FSMEIDTQA--RLRTLPLLV  149 (149)
Q Consensus       114 a~~~~~~L~~~~eML~eY-Fsi~I~~~g--~L~slP~ll  149 (149)
                      ...-.+.+.++.+.|++. |.++.-.++  .+.++|.++
T Consensus        61 s~~e~~~l~~~~~~L~~~Gf~~~~~~~~~~~v~~vP~~l   99 (144)
T PF08676_consen   61 SPQEAELLEENKEELEKLGFEIEEFGENSIIVRSVPAIL   99 (144)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-EEEEESTTEEEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHhCCeEEEEecCCEEEEEEeCccc
Confidence            123346788888888875 555521233  389999764

MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

Probab=97.23  E-value=0.0014  Score=60.46  Aligned_cols=50  Identities=26%  Similarity=0.442  Sum_probs=47.8

Q ss_pred             HHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCC
Q psy1957          29 EVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG   78 (149)
Q Consensus        29 ~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~   78 (149)
                      +.+....++|.++..+.|+||+..||+||..+..+.++|+.+...+|+.|
T Consensus       447 ~~~~~~~~i~q~~~~yil~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~  496 (638)
T COG0323         447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVG  496 (638)
T ss_pred             cccccceEEEEecceEEEEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccc
Confidence            56778899999999999999999999999999999999999999999997

>smart00853 MutL_C MutL C terminal dimerisation domain

Probab=97.16  E-value=0.0033  Score=45.87  Aligned_cols=91  Identities=18%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             CeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCC---eecccCCCCHHHHHHHhhcCCCCCCCCCCCCh
Q psy1957          34 LSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG---VFRFENPVSIKELLLISLDLPDSGWDPSNGSK  110 (149)
Q Consensus        34 ~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~---~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~  110 (149)
                      ..++|.++.++.++|.+..||++|-.+.-+-..|......+.+-+   .-.|-.|+.+                  +-++
T Consensus         2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i------------------~l~~   63 (136)
T smart00853        2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVIL------------------ELSP   63 (136)
T ss_pred             ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEE------------------EcCH
Confidence            468999999999999999999999999999999998888763321   2233334332                  0111


Q ss_pred             hHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeecccc
Q psy1957         111 SEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLL  148 (149)
Q Consensus       111 ~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~l  148 (149)
                           .-...+.++.+.|+. +|++++..|    .+.++|.+
T Consensus        64 -----~e~~~l~~~~~~l~~-~Gf~~~~~~~~~~~i~~vP~~   99 (136)
T smart00853       64 -----EEAALLEEHQELLAR-LGFELEIFGGQSVILRSVPAL   99 (136)
T ss_pred             -----HHHHHHHHHHHHHHH-cCeEEEccCCCEEEEEeECcc
Confidence                 122455566666655 777776433    38999974

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.

>PRK00095 mutL DNA mismatch repair protein; Reviewed

Probab=96.25  E-value=0.021  Score=52.47  Aligned_cols=93  Identities=18%  Similarity=0.296  Sum_probs=66.8

Q ss_pred             hcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCCC
Q psy1957          32 RKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNGS  109 (149)
Q Consensus        32 ~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~  109 (149)
                      ....+||.++.++.++|++..||++|-.+.-+-..|......+++  ...-.|-.|+.+.                  .+
T Consensus       429 ~~~~vigQv~~~YIl~e~~~~L~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~LL~P~~l~------------------Ls  490 (617)
T PRK00095        429 PLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPLVLE------------------LS  490 (617)
T ss_pred             cCceEeEEEcCEEEEEEeCCcEEEEEHHHHHHHHHHHHHHHHhccCCCcccccccCeEEe------------------eC
Confidence            335689999999999999999999999999999999999998865  3444555555431                  01


Q ss_pred             hhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeecccc
Q psy1957         110 KSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLL  148 (149)
Q Consensus       110 ~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~l  148 (149)
                      +     .-...+.++.+-|.+ +|++|+.-|    .|.++|.+
T Consensus       491 ~-----~e~~~l~~~~~~L~~-lGf~~e~fg~~si~I~~vP~~  527 (617)
T PRK00095        491 E-----DEADRLEEHKELLAR-LGLELEPFGPNSFAVREVPAL  527 (617)
T ss_pred             H-----HHHHHHHHHHHHHHh-CCcEEEEcCCCEEEEEecChh
Confidence            1     222456666665555 777776422    38999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3rbn_A	284	Crystal Structure Of Mutl Protein Homolog 1 Isoform		7e-34
4e4w_A	285	Structure Of The C-terminal Domain Of The Saccharom		2e-10
4fmn_A	288	Structure Of The C-terminal Domain Of The Saccharom		2e-10

>pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1 [homo Sapiens] Length = 284

Iteration: 1
 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 92/146 (63%)
Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI +Q    L E     SFVGC  P   L QH+TKLY++N T + E
Sbjct: 31  RRIINLTSVLSLQEEINEQGHEVLREXLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 90
Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L  ++LD P+SGW   +G K  +AE   +FL  
Sbjct: 91  ELFYQILIYDFANFGVLRLSEPAPLFDLAXLALDSPESGWTEEDGPKEGLAEYIVEFLKK 150
Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ L DYFS+EID +  L  LPLL+
Sbjct: 151 KAEXLADYFSLEIDEEGNLIGLPLLI 176

>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 285

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATP--CMCLIQHETKLYIVNVTYV 61
           R  + L+S++ LR +++     +L ++F  L++VG       +  IQH+ KL++++   V
Sbjct: 22  RVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 81
Query: 62  LEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFL 121
             ELFYQ+ L DF NFG    ++     +++L +L    S +D  N   S+  E     +
Sbjct: 82  CYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL---LSEFDELNDDASK--EKIISKI 136
Query: 122 LSRADMLTDYFSMEI 136
              + ML +Y+S+E+
Sbjct: 137 WDMSSMLNEYYSIEL 151

>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 288

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATP--CMCLIQHETKLYIVNVTYV 61
           R  + L+S++ LR +++     +L ++F  L++VG       +  IQH+ KL++++   V
Sbjct: 25  RVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFLIDYGSV 84
Query: 62  LEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFL 121
             ELFYQ+ L DF NFG    ++     +++L +L    S +D  N   S+  E     +
Sbjct: 85  CYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL---LSEFDELNDDASK--EKIISKI 139
Query: 122 LSRADMLTDYFSMEI 136
              + ML +Y+S+E+
Sbjct: 140 WDMSSMLNEYYSIEL 154
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3rbn_A	284	DNA mismatch repair protein MLH1; structural genom	2e-56

>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} Length = 284

 Score =  177 bits (449), Expect = 2e-56
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query: 4   RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 63
           RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++N T + E
Sbjct: 31  RRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSE 90

Query: 64  ELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLS 123
           ELFYQ++++DF NFGV R   P  + +L +++LD P+SGW   +G K  +AE   +FL  
Sbjct: 91  ELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKK 150

Query: 124 RADMLTDYFSMEIDTQARLRTLPLLV 149
           +A+ML DYFS+EID +  L  LPLL+
Sbjct: 151 KAEMLADYFSLEIDEEGNLIGLPLLI 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3rbn_A	284	DNA mismatch repair protein MLH1; structural genom	100.0
3kdg_A	197	DNA mismatch repair protein MUTL; endonuclease, DN	96.66
1x9z_A	188	DNA mismatch repair protein MUTL; alpha-beta fold,	96.56
3ncv_A	220	DNA mismatch repair protein MUTL; endonuclease, di	96.49

>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}

Probab=100.00  E-value=1.1e-57  Score=376.82  Aligned_cols=147  Identities=47%  Similarity=0.816  Sum_probs=144.8

Q ss_pred             ceeeeeechHHHHHHHHHHhcChhHHHHhhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCCeecc
Q psy1957           3 LRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF   82 (149)
Q Consensus         3 ~~~~~~L~Sv~~Lr~ev~~~~~~~L~~i~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~l   82 (149)
                      +||+|+||||++||++|++++|++||++|+|||||||||++++||||+|+|||||+..+++|+|||++|++|||||+|+|
T Consensus        30 ~~r~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L  109 (284)
T 3rbn_A           30 RRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRL  109 (284)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred             ceeEEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEee
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHhhcCCCCCCCCCCCChhHHHHHHHHHHHhHHHhhhccceEEEccCCeeeeccccC
Q psy1957          83 ENPVSIKELLLISLDLPDSGWDPSNGSKSEVAESASQFLLSRADMLTDYFSMEIDTQARLRTLPLLV  149 (149)
Q Consensus        83 ~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g~L~slP~ll  149 (149)
                      ++|+||+||+.+|++.++++|+++|++++++|+.++++|++||+||.|||||+||++|+|+|||+|+
T Consensus       110 ~~P~~L~dLl~~al~~~~~~~~e~d~~~~~~~e~i~~~L~~~~eML~EYFsi~Id~~g~L~slPlLl  176 (284)
T 3rbn_A          110 SEPAPLFDLAMLALDSPESGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLI  176 (284)
T ss_dssp             EEEEEHHHHHHHHHTSGGGTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHCCEECTTSEEEEEEECS
T ss_pred             CCCCCHHHHHHHHhhcccccCCcccccHHHHHHHHHHHHHHHHHHHHhheeEEEeCCCcEEEechhh
Confidence            9999999999999999989999999999999999999999999999999999999999999999986

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*

Probab=96.66  E-value=0.0035  Score=48.29  Aligned_cols=95  Identities=17%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             hhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCC
Q psy1957          31 FRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNG  108 (149)
Q Consensus        31 ~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~  108 (149)
                      |....++|.++..+.++|.+..||+||-.+--+-.-|...+..|++  ...-.|-.|+.+        +.     ++   
T Consensus         6 ~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l--------~l-----s~---   69 (197)
T 3kdg_A            6 VPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTF--------HY-----ST---   69 (197)
T ss_dssp             CCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEE--------EC-----CT---
T ss_pred             CCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEE--------ec-----CH---
Confidence            4567899999999999999999999999998898999999988854  344455556543        11     11   


Q ss_pred             ChhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeeccccC
Q psy1957         109 SKSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLLV  149 (149)
Q Consensus       109 ~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~ll  149 (149)
                        .+     ...+.++.+.|.. +|++++..|    .+.++|..+
T Consensus        70 --~e-----~~~l~~~~~~l~~-~Gf~~e~~g~~~~~v~~vP~~l  106 (197)
T 3kdg_A           70 --NE-----ALIIEQHKQELES-VGVFLESFGSNSYIVRCHPAWF  106 (197)
T ss_dssp             --TH-----HHHHHHTHHHHHH-TTCCCEECSTTEEEEEEEETTS
T ss_pred             --HH-----HHHHHHHHHHHHh-CCCEEEECCCCEEEEEecCccc
Confidence              11     2356677776654 455554333    389999764

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1

Probab=96.56  E-value=0.005  Score=46.96  Aligned_cols=91  Identities=14%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             hcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCC--CCeecccCCCCHHHHHHHhhcCCCCCCCCCCCC
Q psy1957          32 RKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFENPVSIKELLLISLDLPDSGWDPSNGS  109 (149)
Q Consensus        32 ~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgn--f~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~  109 (149)
                      ....++|.++.++.++|.+..||+||-.+. +-+-|...+.. ++  ...-.|-.|+.+        +          -+
T Consensus         7 ~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~-~~~~~~~Q~LL~P~~l--------~----------ls   66 (188)
T 1x9z_A            7 SFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTP-GEAPVCAQPLLIPLRL--------K----------VS   66 (188)
T ss_dssp             CCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSB-TTBCCCEEEEEEEEEE--------E----------CC
T ss_pred             CCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHh-cCCCCCcccCCCCEEE--------E----------eC
Confidence            346789999999999999999999999999 99999999987 43  445556556543        1          01


Q ss_pred             hhHHHHHHHHHHHhHHHhhhccceEEEccCC---eeeecccc
Q psy1957         110 KSEVAESASQFLLSRADMLTDYFSMEIDTQA---RLRTLPLL  148 (149)
Q Consensus       110 ~~~la~~~~~~L~~~~eML~eYFsi~I~~~g---~L~slP~l  148 (149)
                      +     .-...+.++.+.|.. +|++|+..|   .+.++|..
T Consensus        67 ~-----~e~~~l~~~~~~l~~-~Gf~~e~~g~~~~v~~vP~~  102 (188)
T 1x9z_A           67 A-----EEKSALEKAQSALAE-LGIDFQSDAQHVTIRAVPLP  102 (188)
T ss_dssp             H-----HHHHHHHHHHHHHHH-TTCEEEECSSEEEEEEEEGG
T ss_pred             H-----HHHHHHHHHHHHHHh-CCcEEEEcCCcEEEEecCch
Confidence            1     112466777776654 556665444   37888875

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}

Probab=96.49  E-value=0.0099  Score=46.77  Aligned_cols=95  Identities=19%  Similarity=0.242  Sum_probs=66.9

Q ss_pred             hhcCeEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcC---CCCeecccCCCCHHHHHHHhhcCCCCCCCCCC
Q psy1957          31 FRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFG---NFGVFRFENPVSIKELLLISLDLPDSGWDPSN  107 (149)
Q Consensus        31 ~~~~~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fg---nf~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d  107 (149)
                      +--..++|.++..+.++|.+..||+||-.+--+-+-|.....++.   ....-.|-.|+.+        +          
T Consensus        27 ~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l--------~----------   88 (220)
T 3ncv_A           27 PPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTF--------A----------   88 (220)
T ss_dssp             CTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEE--------E----------
T ss_pred             CCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEE--------E----------
Confidence            345679999999999999999999999988888888888888774   3455566666543        1          


Q ss_pred             CChhHHHHHHHHHHHhHHHhhhccceEEEccCC----eeeeccccC
Q psy1957         108 GSKSEVAESASQFLLSRADMLTDYFSMEIDTQA----RLRTLPLLV  149 (149)
Q Consensus       108 ~~~~~la~~~~~~L~~~~eML~eYFsi~I~~~g----~L~slP~ll  149 (149)
                      -++     .-...+.++.+.|.. +|++|+..|    .+.++|..+
T Consensus        89 Ls~-----~e~~~l~~~~~~L~~-lGf~ie~fg~~~v~V~~vP~~l  128 (220)
T 3ncv_A           89 ASH-----EECAALADHAETLAG-FGLELSDMGGNTLAVRAAPVML  128 (220)
T ss_dssp             CCH-----HHHHHHHHHHHHHHH-TTCEEECCSTTEEEEEEEETTS
T ss_pred             cCH-----HHHHHHHHHHHHHHh-CCCEEEECCCCEEEEEEcCccc
Confidence            011     112467777776654 566665433    388999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1x9za_	182	DNA mismatch repair protein MutL {Escherichia coli	96.16

>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: DNA mismatch repair protein MutL
superfamily: DNA mismatch repair protein MutL
family: DNA mismatch repair protein MutL
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.004  Score=45.34  Aligned_cols=91  Identities=11%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             eEEEEecCCeeEEEecCceEeEehHHHHHHHHHHHHHhhcCCCCeecccCCCCHHHHHHHhhcCCCCCCCCCCCChhHHH
Q psy1957          35 SFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFENPVSIKELLLISLDLPDSGWDPSNGSKSEVA  114 (149)
Q Consensus        35 ~fVG~vd~~~~LiQ~~t~LyLvn~~~l~~ElfYQ~~L~~Fgnf~~i~l~~p~~l~~Ll~~al~~~~~~~~~~d~~~~~la  114 (149)
                      ..+|.|..++++++++..||++|-.+.-+-+.|-.....-+....=.|-.|+.+        +          -++    
T Consensus         5 rvl~~v~~~Yil~e~~~gl~lidqhaA~eri~~e~l~~~~~~i~sQ~LL~P~~l--------~----------ls~----   62 (182)
T d1x9za_           5 RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRL--------K----------VSA----   62 (182)
T ss_dssp             EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHSBTTBCCCEEEEEEEEEE--------E----------CCH----
T ss_pred             hhhhhhcCEEEEEEeCCceEEEeHHHHHHHHHHHHHHhccCCCCccccCCCeee--------c----------CCH----
Confidence            469999999999999999999999998666777664444333444444444322        1          111    


Q ss_pred             HHHHHHHHhHHHhhhccceEEEccCCe---eeeccccC
Q psy1957         115 ESASQFLLSRADMLTDYFSMEIDTQAR---LRTLPLLV  149 (149)
Q Consensus       115 ~~~~~~L~~~~eML~eYFsi~I~~~g~---L~slP~ll  149 (149)
                       .-...+.++.+.|+. +|++|+..|+   +.++|.++
T Consensus        63 -~e~~~l~~~~~~L~~-~Gf~~e~~g~~i~v~~iP~~l   98 (182)
T d1x9za_          63 -EEKSALEKAQSALAE-LGIDFQSDAQHVTIRAVPLPL   98 (182)
T ss_dssp             -HHHHHHHHHHHHHHH-TTCEEEECSSEEEEEEEEGGG
T ss_pred             -HHHHHHHHHHHHHHH-cCCEEEccccceeeecCCccc
Confidence             123456666664443 4555544443   88899753