Psyllid ID: psy195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MASAPVSSYMLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHEEEEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEcccHHHcHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHccccccccccEEEEEcccccccccccccccEEEEEEEEcccccEEEccccccccccccccccccccccccccEEEEEcccccccccEEEcccccccccccccccccccEEEccccccEEEEEEccccEEEEEEEccEEEEEEEEHHcccHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEEEEEEEEccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEEccccccEEccccccHHccccccccccEEHcccccccccccEcccEEEEEEEEEcccccEEEEEccccccccccEEccccccccccccEEEEEEcccccccEEEEEccccEEEEccccccccEEEEcccccccEEEEEccccEEEEEEEEccEEEEEEEEEEcccccccEEEEEEEcccccEEEEEEccEEEEEEEHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccc
Coil and Loop (DISEMBL)
masapvssymlspseqpkypkaVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGlcyffplfggiiadtylGKFLTIVILSIVYLGGNVLltvtaidplnipkrTFTLVGLLLIAVgtggikpcvssfggdqfivpeqSAQLEKFFSLFYFSinagslistfitpifrhdmqcfgqeacfplafgVPALLMFLAIIVFIIgkpmykinkpkgnvALEVFQCTIRAIKNKFKTKKSERTKEHWLDYAndkydqgtIEDIKTLLRILLLFVPlpifwalfdqqgsrwtfqanrmdgrvfgtsleikpdqmqlINPLLILTFIPLFQYViyplvdkcglnrplrklTVGGLLAALSFVVSALVEFNirahsqiapqdrhfslriynsmdcdfvfhsplknERVLRAMDMLAlnnipingtqhfaalfepstscpyvlnktfqssvlgadgkitEYYLIRDEKQQAHLKRLGefhdlrniNSSLKMQILYGSelqgkritlesddgfyqdidlptgacyteyiegipagvyEVRSENkvlksnmelqddnvyvlnlnteaspehRTARllkddssnkvsmlWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYveedededhe
Flexible Loop (DISEMBL)
masapvssymlspseqpkyPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKnkfktkksertkehwldyandkydqGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKsnmelqddNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE
Low Complexity Region (SEG)
MASAPVSSYMLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTllrilllfvplpifWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGllaalsfvvsalvEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE
Disordered region (IsUnstruct)
*******************PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKK*ERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLN*******************KVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYV*********
Disordered Region (DISOPRED)
*****************KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKN****************YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRY************
Disordered Region (DISEMBL)
***************QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKF********KEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE
Disordered Region (DISPRO)
***************QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASAPVSSYMLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	691	2.2.26 [Sep-21-2011]
P91679	743	Peptide transporter famil	no	N/A	0.945	0.878	0.444	1e-149
Q8WMX5	708	Solute carrier family 15	yes	N/A	0.934	0.912	0.396	1e-136
Q9ES07	729	Solute carrier family 15	yes	N/A	0.934	0.886	0.404	1e-136
Q63424	729	Solute carrier family 15	yes	N/A	0.953	0.903	0.403	1e-135
P51574	710	Solute carrier family 15	no	N/A	0.923	0.898	0.395	1e-135
P46059	708	Solute carrier family 15	yes	N/A	0.930	0.908	0.390	1e-135
Q9JIP7	709	Solute carrier family 15	no	N/A	0.931	0.908	0.399	1e-134
P46029	729	Solute carrier family 15	yes	N/A	0.949	0.899	0.400	1e-132
P36836	707	Solute carrier family 15	no	N/A	0.926	0.905	0.388	1e-131
Q16348	729	Solute carrier family 15	no	N/A	0.947	0.898	0.410	1e-131

>sp|P91679|PEPT1_DROME Peptide transporter family 1 OS=Drosophila melanogaster GN=yin PE=1 SV=2

 Score =  528 bits (1361), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 304/684 (44%), Positives = 430/684 (62%), Gaps = 31/684 (4%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+V FI+ NEFCERF YYGMRT+L LY+   L Y+E+TATV+FH +T L Y FPL G 
Sbjct: 32  YPKSVAFIISNEFCERFNYYGMRTILVLYLTNKLGYNEETATVLFHTFTMLVYIFPLIGA 91

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
           +IAD +LGK+ TI+ LS+VY  G ++++  A+    +P +  T+VGLLLIA+GTGGIKPC
Sbjct: 92  LIADGWLGKYKTILYLSLVYSLGAMVVSFGAVPLSGMPTKAVTVVGLLLIAIGTGGIKPC 151

Query: 139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
           VS+FGGDQF +P QS QL KFFSLFYF+INAGSLIST  TPI R D+ CFG + CF LAF
Sbjct: 152 VSAFGGDQFSLPAQSFQLAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSLAF 211

Query: 199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
           GVPA+LM  ++I+F+ GK +Y+   P GN+   V +C   A K   K + SE   E +LD
Sbjct: 212 GVPAILMIFSVIIFMAGKRLYRCQPPAGNMIFGVSRCIADAFKGWQKRRHSE-PMESFLD 270

Query: 259 YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
           YA        +++ K L RIL LF+P P+FWALFDQQGSRWTFQA RMDG V G   +IK
Sbjct: 271 YAKPTVGSRMVQETKCLGRILRLFLPFPVFWALFDQQGSRWTFQATRMDGNVLG--FQIK 328

Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNI 378
           PDQMQ++NPLLIL F+PLF Y+IYP + +CG+ RPL+KLT+G LLAAL F +SA +E  +
Sbjct: 329 PDQMQVVNPLLILGFLPLFDYIIYPALARCGIRRPLQKLTLGLLLAALGFFLSAGLEMKM 388

Query: 379 RA----HSQIAPQDRHFSLRIYNSMDCDFVFHSP-LKNERVLRAMDMLALNNIPINGTQH 433
                  + I P   H  LRIYN M C +   S  ++  RV+  +++    ++ +  ++ 
Sbjct: 389 EQAAYRATPIEPDMTH--LRIYNGMPCRYEISSAVVQTPRVIEPLNVWEDLSLQMTESKE 446

Query: 434 FAALFEP-STSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINS 492
           +    +P S  CP +++K     +    GK   Y+L +D        +L EF D   + +
Sbjct: 447 YTFNAQPVSGECPSIIDK-----LRLQPGKSVSYFLAQD--------KLVEFADGLQMAA 493

Query: 493 S----LKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENK 548
           +      ++ L  +      + L ++    Q+  L         +  I  G   V    K
Sbjct: 494 TDTGRTSVRALLNTPDGEGPVLLSTESATSQEPPLTLDKGNVPQLHRITPGFARVDINGK 553

Query: 549 VLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFS 608
            + S  E ++  +Y + L T ++ +     +++  + + VS+LW  PQ +++TAAE+MFS
Sbjct: 554 KVAS-FEAKEGRLYSI-LVTGSARDGYQHNVIEVVALSTVSILWQLPQIVVMTAAEVMFS 611

Query: 609 ITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVD 668
           +TG EF+++Q+P SMKS + ACWLL+ A GN++V ++AE K   +Q+ EF LFASLM+VD
Sbjct: 612 VTGLEFSYSQSPPSMKSVLQACWLLSVAIGNMLVVVIAEFKFTSSQSGEFTLFASLMLVD 671

Query: 669 MGVFALLAMRYKYVEEDED-EDHE 691
           M +F  LA  Y+Y ++ ED ED +
Sbjct: 672 MMIFLWLARSYQYKDQREDFEDDD 695

Important role in absorbtion of dietary peptides. High-affinity transporter of alanylalanine. Dipeptide transport activity is proton dependent.
Drosophila melanogaster (taxid: 7227)

>sp|Q8WMX5|S15A1_CANFA Solute carrier family 15 member 1 OS=Canis familiaris GN=SLC15A1 PE=2 SV=2

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 275/693 (39%), Positives = 407/693 (58%), Gaps = 47/693 (6%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YP ++FFIV+NEFCERF YYGMR +L LY    + +D+  +T ++H +  LCY  P+ G 
Sbjct: 12  YPLSIFFIVVNEFCERFSYYGMRALLILYFRRFIGWDDNLSTAIYHTFVALCYLTPILGA 71

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR-----------TFTLVGLLL 127
           +IAD++LGKF TIV LSIVY  G  +  V++I+ L    +             +++GL L
Sbjct: 72  LIADSWLGKFKTIVSLSIVYTIGQAVTAVSSINDLTDYNKDGTPDNLSVHVALSMIGLAL 131

Query: 128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR-HDMQ 186
           IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +INAGSLIST +TP+ R H+  
Sbjct: 132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINAGSLISTIVTPMLRVHECG 190

Query: 187 CFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKT 246
            + Q+AC+PLAFGVPA LM +++IVF+IG  MYK  +P+GNV  +V +C   A+KN+F+ 
Sbjct: 191 IYSQKACYPLAFGVPAALMAVSLIVFVIGSGMYKKFQPQGNVMGKVVKCIGFALKNRFRH 250

Query: 247 KKSERTK-EHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR 305
           +  +  K EHWLD+A +KYD+  I  IK + +++ L++PLP+FWALFDQQGSRWT QA  
Sbjct: 251 RSKQFPKREHWLDWAKEKYDERLISQIKMVTKVMFLYIPLPMFWALFDQQGSRWTLQATA 310

Query: 306 MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLA 364
           M G++    LE++PDQMQ +N +LI+  +P+   V+YPL+ KCG N   L+++TVG  LA
Sbjct: 311 MSGKI--GLLEVQPDQMQTVNAILIVVMVPIMDAVVYPLIAKCGFNFTSLKRMTVGMFLA 368

Query: 365 ALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYN----SMDCDF----VFHSPLKNERVLR 416
           +++FV++A+V+  I     + P+     +++ N    +M+  F    V  S +       
Sbjct: 369 SMAFVMAAIVQLEIDKTLPVFPKQNEVQIKVLNIGNGAMNVSFPGAVVTVSQMSQSDGFM 428

Query: 417 AMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQA 476
             D+  L +I I+ T        P     Y   +  + ++L        Y +++D   Q 
Sbjct: 429 TFDVDKLTSINISSTG------SPVIPVTYNFEQGHRHTLL--VWAPNNYRVVKDGLNQK 480

Query: 477 HLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGI 536
             K       + ++N SL   I  G ++     +  + +  YQ   L T        + I
Sbjct: 481 PEKGENGIRFINSLNESLN--ITMGDKVYVNVTSHNASE--YQFFSLGTKNITISSTQQI 536

Query: 537 PAGVYEVRSENKVLK-SNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFP 595
                  ++  KVL+ SN+E      YV+   +   PE     + +D S N V+M    P
Sbjct: 537 S------QNCTKVLQSSNLEFGSAYTYVIGTQSTGCPE---LHMFEDISPNTVNMALQIP 587

Query: 596 QYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQA 655
           QY +IT  E++FS+TG EF+++QAP +MKS + A WLLT A GN+IV IVA A  F  Q 
Sbjct: 588 QYFLITCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAVGNIIVLIVAGAGQFSEQW 647

Query: 656 YEFLLFASLMVVDMGVFALLAMRYKYVEEDEDE 688
            E++LFA+L++V   +FA++A  Y YV   E E
Sbjct: 648 AEYILFAALLLVVCVIFAIMARFYTYVNPAEIE 680

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products.

Canis familiaris (taxid: 9615)

>sp|Q9ES07|S15A2_MOUSE Solute carrier family 15 member 2 OS=Mus musculus GN=Slc15a2 PE=2 SV=1

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 281/694 (40%), Positives = 406/694 (58%), Gaps = 48/694 (6%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
            YP ++ FIV+NEFCERF YYGM+ VL+LY    L ++E T+T ++H ++ LCYF P+ G
Sbjct: 41  SYPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILG 100

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGI 135
             IAD++LGKF TI+ LS+VY+ G+V  ++ AI  L   +     +LVGL LIA+GTGGI
Sbjct: 101 AAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPILGGKMLHTILSLVGLSLIALGTGGI 160

Query: 136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP 195
           KPCV++FGGDQF   E +    ++FS+FY SINAGSLISTFITP+ R D++CFG++ C+ 
Sbjct: 161 KPCVAAFGGDQF-EEEHAEARTRYFSVFYLSINAGSLISTFITPMLRGDVKCFGED-CYA 218

Query: 196 LAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-E 254
           LAFG+P LLM LA++VF +G  MY+   P+GN+  +V +C   AI N+F+ +  +  K +
Sbjct: 219 LAFGIPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVTKCIWFAICNRFRNRSEDIPKRQ 278

Query: 255 HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTS 314
           HWLD+A +KY +  I D+K L RIL L++PLP+FWAL DQQGSRWT QAN+MDG +    
Sbjct: 279 HWLDWAAEKYPKHLIMDVKALTRILFLYIPLPMFWALLDQQGSRWTLQANKMDGDL--GF 336

Query: 315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSAL 373
             ++PDQMQ++NP L+L FIPLF  VIY L+ KCG+N   LRK+ VG +LA L+F V+AL
Sbjct: 337 FVLQPDQMQVLNPFLVLVFIPLFDLVIYRLISKCGVNFSSLRKMAVGMILACLAFAVAAL 396

Query: 374 VEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQH 433
           VE  I       P  +   L++ N  D +            L    + +  N     T H
Sbjct: 397 VEIKINGMIHPQPASQEIFLQVLNLADGEIEVTVQGNRNNPLLVESISSFQN-----TTH 451

Query: 434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRNI 490
           ++ L   + S     +  + +  +  +  + E   Y L+  E  ++    L +   ++  
Sbjct: 452 YSKLRLETKSQDLHFHLKYNNLSVHNEYSVEEKNCYQLVVHENGESLSSMLVKDTGIKPA 511

Query: 491 NSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVL 550
           N    ++ +          TL  D     D + P          G   GV E R+  +  
Sbjct: 512 NGMTAIRFIN---------TLHKDMNISLDANAPLSV-------GKDYGVSEYRTVQRGK 555

Query: 551 KSNMELQ-DDNVYVLNLN------------TEASPEHRTARLLKDDSSNKVSMLWLFPQY 597
              +  + +DNV+ LNL             T  +     A   +D  +NK+S+ W  PQY
Sbjct: 556 YPAVHCETEDNVFSLNLGQLDFGTTYLFVITNITNRGLQAWKAEDIPANKLSIAWQLPQY 615

Query: 598 IIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYE 657
           +++TAAE+MFS+TG EF+++QAP SMKS + A WLLT A GN+IV IVA+       A E
Sbjct: 616 VLVTAAEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLIVAQFSGLVQWA-E 674

Query: 658 FLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE 691
           F+LF+ L++V   +F++  M Y YV    +  HE
Sbjct: 675 FVLFSCLLLVVCLIFSV--MGYYYVPLKSEGIHE 706

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides.

Mus musculus (taxid: 10090)

>sp|Q63424|S15A2_RAT Solute carrier family 15 member 2 OS=Rattus norvegicus GN=Slc15a2 PE=2 SV=1

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/681 (40%), Positives = 406/681 (59%), Gaps = 22/681 (3%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
            YP ++ FIV+NEFCERF YYGM+ VL+LY    L ++E T+T ++H ++ LCYF P+ G
Sbjct: 41  SYPVSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILG 100

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGI 135
             IAD++LGKF TI+ LS+VY+ G+V  ++ AI  L   +     +LVGL LIA+GTGGI
Sbjct: 101 AAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPILGGKMLHTILSLVGLSLIALGTGGI 160

Query: 136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP 195
           KPCV++FGGDQF   E +    ++FS+FY +INAGSLISTFITP+ R D++CFGQ+ C+ 
Sbjct: 161 KPCVAAFGGDQF-EEEHAEARTRYFSVFYLAINAGSLISTFITPMLRGDVKCFGQD-CYA 218

Query: 196 LAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-E 254
           LAFGVP LLM LA++VF +G  MY+   P+GN+  +V +C   A+ N+F+ +  +  K +
Sbjct: 219 LAFGVPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVIKCIWFALCNRFRNRSGDLPKRQ 278

Query: 255 HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTS 314
           HWLD+A +KY +  I D+K L R+L L++PLP+FWAL DQQGSRWT QAN+M+G +    
Sbjct: 279 HWLDWAAEKYPKHLIADVKALTRVLFLYIPLPMFWALLDQQGSRWTLQANKMNGDL--GF 336

Query: 315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSAL 373
             ++PDQMQ++NP L+L FIPLF  VIY L+ KC +N   LRK+ VG +LA L+F V+AL
Sbjct: 337 FVLQPDQMQVLNPFLVLIFIPLFDLVIYRLISKCRINFSSLRKMAVGMILACLAFAVAAL 396

Query: 374 VEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQH 433
           VE  I       P  +   L++ N  D D            L    + +  N     T H
Sbjct: 397 VETKINGMIHPQPASQEIFLQVLNLADGDVKVTVLGSRNNSLLVESVSSFQN-----TTH 451

Query: 434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRNI 490
           ++ L   + S     +  + S  +  D  + E   Y L+  +  ++    L +   ++  
Sbjct: 452 YSKLHLEAKSQDLHFHLKYNSLSVHNDHSVEEKNCYQLLIHQDGESISSMLVKDTGIKPA 511

Query: 491 NSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVL 550
           N    ++ +  +  +   I+L++D       D    A  T      PA      +E+KV 
Sbjct: 512 NGMAAIRFI-NTLHKDLNISLDTDAPLSVGKDYGVSAYRTVLRGKYPA--VHCETEDKVF 568

Query: 551 KSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSIT 610
             ++   D     L + T  + +   A   +D   NK+S+ W  PQY+++TAAE+MFS+T
Sbjct: 569 SLDLGQLDFGTTYLFVITNITSQGLQAWKAEDIPVNKLSIAWQLPQYVLVTAAEVMFSVT 628

Query: 611 GFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMG 670
           G EF+++QAP SMKS + A WLLT A GN+IV +VA+       A EF+LF+ L++V   
Sbjct: 629 GLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLVVAQFSGLAQWA-EFVLFSCLLLVVCL 687

Query: 671 VFALLAMRYKYVEEDEDEDHE 691
           +F+++A  Y YV    ++  E
Sbjct: 688 IFSVMA--YYYVPLKSEDTRE 706

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides.

Rattus norvegicus (taxid: 10116)

>sp|P51574|S15A1_RAT Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/713 (39%), Positives = 420/713 (58%), Gaps = 75/713 (10%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YP ++FFIV+NEFCERF YYGMR +L LY    L +D+  +T ++H +  LCY  P+ G 
Sbjct: 12  YPLSIFFIVVNEFCERFSYYGMRALLVLYFRNFLGWDDDLSTAIYHTFVALCYLTPILGA 71

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAID----------PLNIPKR-TFTLVGLLL 127
           +IAD++LGKF TIV LSIVY  G  +++V++I+          P N+P     +++GL L
Sbjct: 72  LIADSWLGKFKTIVSLSIVYTIGQAVISVSSINDLTDHDHDGSPNNLPLHVALSMIGLAL 131

Query: 128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
           IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +INAGSL+ST ITPI R   QC
Sbjct: 132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINAGSLLSTIITPILRVQ-QC 189

Query: 188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
               Q+AC+PLAFGVPA LM +A+IVF++G  MYK  +P+GN+  +V +C   AIKN+F+
Sbjct: 190 GIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGNIMGKVAKCIRFAIKNRFR 249

Query: 246 TK-KSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQAN 304
            + K+   + HWLD+A +KYD+  I  IK + +++ L++PLP+FWALFDQQGSRWT QA 
Sbjct: 250 HRSKAFPKRNHWLDWAKEKYDERLISQIKIMTKVMFLYIPLPMFWALFDQQGSRWTLQAT 309

Query: 305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLL 363
            M G++ GT +EI+PDQMQ +N +LI+  +P+   V+YPL+ KCG N   L+K+TVG  L
Sbjct: 310 TMTGKI-GT-IEIQPDQMQTVNAILIVIMVPIVDAVVYPLIAKCGFNFTSLKKMTVGMFL 367

Query: 364 AALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLR------- 416
           A+++FVV+A+V+  I     + P      +++ N  + D   + P KN  V +       
Sbjct: 368 ASMAFVVAAIVQVEIDKTLPVFPSGNQVQIKVLNIGNNDMAVYFPGKNVTVAQMSQTDTF 427

Query: 417 -AMDMLALNNIPIN-----GTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIR 470
              D+  L +I ++     G    A  FEP      +        V G +     Y +++
Sbjct: 428 MTFDVDQLTSINVSSPGSPGVTTVAHEFEPGHRHTLL--------VWGPN----LYRVVK 475

Query: 471 DEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYT 530
           D   Q   K  GE + +R +++  +M            IT++     Y+++   + + Y 
Sbjct: 476 DGLNQKPEK--GE-NGIRFVSTLNEM------------ITIKMSGKVYENVTSHSASNYQ 520

Query: 531 EYIEGIPAGV--YEVRSENKVLKSNMELQDDNV-----YVLNLNTEASPEHRTARLLKDD 583
            +    P+G   Y + +       + + +  N+     Y   + + AS      +  +D 
Sbjct: 521 FF----PSGQKDYTINTTEIAPNCSSDFKSSNLDFGSAYTYVIRSRASDGCLEVKEFEDI 576

Query: 584 SSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVA 643
             N V+M    PQY ++T  E++FS+TG EF+++QAP +MKS + A WLLT A GN+IV 
Sbjct: 577 PPNTVNMALQIPQYFLLTCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAIGNIIVL 636

Query: 644 IVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDE-----DEDHE 691
           IVAEA  F+ Q  E++LFASL++V   +FA++A  Y Y+   E     DED +
Sbjct: 637 IVAEAGHFDKQWAEYVLFASLLLVVCIIFAIMARFYTYINPAEIEAQFDEDEK 689

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products.

Rattus norvegicus (taxid: 10116)

>sp|P46059|S15A1_HUMAN Solute carrier family 15 member 1 OS=Homo sapiens GN=SLC15A1 PE=2 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 276/706 (39%), Positives = 412/706 (58%), Gaps = 63/706 (8%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YP ++FFIV+NEFCERF YYGMR +L LY    + +D+  +T ++H +  LCY  P+ G 
Sbjct: 12  YPLSIFFIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGA 71

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAID----------PLNIPKR-TFTLVGLLL 127
           +IAD++LGKF TIV LSIVY  G  + +V++I+          P ++P     +L+GL L
Sbjct: 72  LIADSWLGKFKTIVSLSIVYTIGQAVTSVSSINDLTDHNHDGTPDSLPVHVVLSLIGLAL 131

Query: 128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
           IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +INAGSL+ST ITP+ R   QC
Sbjct: 132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINAGSLLSTIITPMLRVQ-QC 189

Query: 188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
               ++AC+PLAFGVPA LM +A+IVF++G  MYK  KP+GN+  +V +C   AIKN+F+
Sbjct: 190 GIHSKQACYPLAFGVPAALMAVALIVFVLGSGMYKKFKPQGNIMGKVAKCIGFAIKNRFR 249

Query: 246 TK-KSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQAN 304
            + K+   +EHWLD+A +KYD+  I  IK + R++ L++PLP+FWALFDQQGSRWT QA 
Sbjct: 250 HRSKAFPKREHWLDWAKEKYDERLISQIKMVTRVMFLYIPLPMFWALFDQQGSRWTLQAT 309

Query: 305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLL 363
            M G++   +LEI+PDQMQ +N +LI+  +P+F  V+YPL+ KCG N   L+K+ VG +L
Sbjct: 310 TMSGKI--GALEIQPDQMQTVNAILIVIMVPIFDAVLYPLIAKCGFNFTSLKKMAVGMVL 367

Query: 364 AALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYN--------SMDCDFVFHSPLKNERVL 415
           A+++FVV+A+V+  I     + P+     +++ N        S+  + V   P+      
Sbjct: 368 ASMAFVVAAIVQVEIDKTLPVFPKGNEVQIKVLNIGNNTMNISLPGEMVTLGPMSQTNAF 427

Query: 416 RAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQ 475
              D+  L  I I+          P T+      +  + ++L        Y +++D   Q
Sbjct: 428 MTFDVNKLTRINISSPG------SPVTAVTDDFKQGQRHTLL--VWAPNHYQVVKDGLNQ 479

Query: 476 AHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEG 535
              K  GE + +R +N+  ++            IT+      Y +I     + Y  +  G
Sbjct: 480 KPEK--GE-NGIRFVNTFNEL------------ITITMSGKVYANISSYNASTYQFFPSG 524

Query: 536 IPAGVYEVRSENKVLKSN-----MELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSM 590
           I              + N     +E      Y++    ++ PE    ++ +D S+N V+M
Sbjct: 525 IKGFTISSTEIPPQCQPNFNTFYLEFGSAYTYIVQRKNDSCPE---VKVFEDISANTVNM 581

Query: 591 LWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKI 650
               PQY ++T  E++FS+TG EF+++QAP +MKS + A WLLT A GN+IV IVA A  
Sbjct: 582 ALQIPQYFLLTCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAVGNIIVLIVAGAGQ 641

Query: 651 FENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDE-----DEDHE 691
           F  Q  E++LFA+L++V   +FA++A  Y Y+   E     DED +
Sbjct: 642 FSKQWAEYILFAALLLVVCVIFAIMARFYTYINPAEIEAQFDEDEK 687

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products.

Homo sapiens (taxid: 9606)

>sp|Q9JIP7|S15A1_MOUSE Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=2

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/706 (39%), Positives = 421/706 (59%), Gaps = 62/706 (8%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YP ++FFIV+NEFCERF YYGMR +L LY    L +D+  +T ++H +  LCY  P+ G 
Sbjct: 12  YPLSIFFIVVNEFCERFSYYGMRALLVLYFRNFLGWDDNLSTAIYHTFVALCYLTPILGA 71

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAID----------PLNIPKR-TFTLVGLLL 127
           +IAD++LGKF TIV LSIVY  G  +++V++I+          P ++P     ++VGL L
Sbjct: 72  LIADSWLGKFKTIVSLSIVYTIGQAVISVSSINDLTDHDHNGSPDSLPVHVALSMVGLAL 131

Query: 128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
           IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +IN GSL+ST ITPI R   QC
Sbjct: 132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINGGSLLSTIITPILRVQ-QC 189

Query: 188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
               Q+AC+PLAFGVPA LM +A+IVF++G  MYK  +P+GN+  +V +C   AIKN+F+
Sbjct: 190 GIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGNIMGKVAKCIGFAIKNRFR 249

Query: 246 TK-KSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQAN 304
            + K+   +EHWLD+A +KYD+  I  IK + +++ L++PLP+FWALFDQQGSRWT QA 
Sbjct: 250 HRSKAYPKREHWLDWAKEKYDERLISQIKMVTKVMFLYIPLPMFWALFDQQGSRWTLQAT 309

Query: 305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLL 363
            M+G++   ++EI+PDQMQ +N +LI+  +P+   V+YPL+ KCG N   L+K+TVG  L
Sbjct: 310 TMNGKI--GAIEIQPDQMQTVNAILIVIMVPIVDAVVYPLIAKCGFNFTSLKKMTVGMFL 367

Query: 364 AALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAM----- 418
           A+++FVV+A+V+  I     + P      +++ N  + +   H P  N   L  M     
Sbjct: 368 ASMAFVVAAIVQVEIDKTLPVFPGGNQVQIKVLNIGNNNMTVHFP-GNSVTLAQMSQTDT 426

Query: 419 ------DMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDE 472
                 D L   NI  +G+          T+  +   +  + ++L  +   ++Y +++D 
Sbjct: 427 FMTFDIDKLTSINISSSGSPGV-------TTVAHDFEQGHRHTLLVWNP--SQYRVVKDG 477

Query: 473 KQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTG-ACYTE 531
             Q   K  GE + +R +N+  +M  +  S    + +T  +  G YQ    P+G   YT 
Sbjct: 478 LNQKPEK--GE-NGIRFVNTLNEMVTIKMSGKVYENVTSHNASG-YQ--FFPSGEKQYTI 531

Query: 532 YIEGI-PAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSM 590
               + P  + + +S      SN++      YV+   ++   E    +  +D   N V+M
Sbjct: 532 NTTAVAPTCLTDFKS------SNLDFGSAYTYVIRRASDGCLE---VKEFEDIPPNTVNM 582

Query: 591 LWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKI 650
               PQY ++T  E++FS+TG EF+++QAP +MKS + A WLLT A GN+IV IVA A  
Sbjct: 583 ALQIPQYFLLTCGEVVFSVTGLEFSYSQAPSNMKSVLQAGWLLTVAVGNIIVLIVAGAGH 642

Query: 651 FENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDE-----DEDHE 691
           F  Q  E++LFASL++V   +FA++A  Y Y+   E     DED +
Sbjct: 643 FPKQWAEYILFASLLLVVCVIFAIMARFYTYINPAEIEAQFDEDEK 688

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products.

Mus musculus (taxid: 10090)

>sp|P46029|S15A2_RABIT Solute carrier family 15 member 2 OS=Oryctolagus cuniculus GN=SLC15A2 PE=2 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 275/686 (40%), Positives = 412/686 (60%), Gaps = 30/686 (4%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
            YP ++ FIV+NEFCERF YYGM+ VL+LY    L ++E T+T ++H ++ LCYF P+ G
Sbjct: 41  NYPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILG 100

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGI 135
             IAD++LGKF TI+ LS+V + G+V+ +++A   L   +     +LVGL LIA+GTGGI
Sbjct: 101 AAIADSWLGKFKTIIYLSLVNVLGHVIKSLSAFPILGGKVVHTVLSLVGLCLIALGTGGI 160

Query: 136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP 195
           KPCV++FGGDQF   + + +  ++FS FY +INAGSLISTFITP+ R D+QCFG++ C+ 
Sbjct: 161 KPCVAAFGGDQF-EEKHAEERTRYFSGFYLAINAGSLISTFITPMLRGDVQCFGED-CYA 218

Query: 196 LAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-E 254
           LAFGVP LLM +A++VF +G  MYK   P+GN+  +V +C   AI N+FK +  +  K +
Sbjct: 219 LAFGVPGLLMVIALVVFAMGSKMYKKPPPEGNIVAQVVKCIWFAISNRFKNRSEDIPKRQ 278

Query: 255 HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTS 314
           HWLD+A +KY +  I D+KTL R+L L++PLP+FWAL DQQGSRWT QA +M+G +    
Sbjct: 279 HWLDWAAEKYPKQLIMDVKTLTRVLFLYIPLPMFWALLDQQGSRWTLQATKMNGNL--GF 336

Query: 315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSAL 373
             ++PDQMQ++NPLL+L FIPLF  VIY L+ KCG+N   LRK+ VG +LA L+F  +A 
Sbjct: 337 FVLQPDQMQVLNPLLVLIFIPLFDLVIYRLISKCGINFTSLRKMAVGMVLACLAFAAAAT 396

Query: 374 VEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQH 433
           VE  I   +   P  +   L++ N  D +        N   L A  + +    P     H
Sbjct: 397 VEIKINEMAPPQPGSQEILLQVLNLADDEVKLTVLGNNNNSLLADSIKSFQKTP-----H 451

Query: 434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRNI 490
           ++ +   + S  +  +  + +  +  +  + E   Y LI  E  ++    +    D+ N 
Sbjct: 452 YSKIHLNTKSQDFYFHLKYHNLSIYTEHSVEERNWYSLIIREDGKSISSIM--VKDMENE 509

Query: 491 NSSLKMQILYGSELQGK-RITLESDDGFYQDIDLPTGACY-TEYIEGIPAGVY---EVRS 545
            +     I + + LQ    I+L +      DI L  G  Y       +  G Y     ++
Sbjct: 510 TTYGMTAIRFINTLQENVNISLGT------DISLNVGENYGVSAYRTVQRGEYPAVHCKT 563

Query: 546 ENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI 605
           E+K    N+ L D     L + T ++ +   A  ++D  +NKVS+ W  PQY ++TA E+
Sbjct: 564 EDKDFSLNLGLLDFGASYLFVITNSTKQGLQAWKMEDIPANKVSIAWQLPQYALVTAGEV 623

Query: 606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLM 665
           MFS+TG EF+++QAP SMKS + A WLLT A GN+IV +VA+       A EF+LF+ L+
Sbjct: 624 MFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAIGNIIVLVVAQFSGLVQWA-EFVLFSCLL 682

Query: 666 VVDMGVFALLAMRYKYVEEDEDEDHE 691
           +V   +F+++   Y  ++ ++ +  E
Sbjct: 683 LVVCLIFSIMGYYYIPIKSEDIQGPE 708

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides.

Oryctolagus cuniculus (taxid: 9986)

>sp|P36836|S15A1_RABIT Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1

 Score =  471 bits (1211), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/697 (38%), Positives = 399/697 (57%), Gaps = 57/697 (8%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YP ++FFIV+NEFCERF YYGMR +L LY    + +D+  +TV++H +  LCY  P+ G 
Sbjct: 12  YPLSIFFIVVNEFCERFSYYGMRALLILYFRNFIGWDDNLSTVIYHTFVALCYLTPILGA 71

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAID----------PLNIPKR-TFTLVGLLL 127
           +IAD +LGKF TIV LSIVY  G  + ++++++          P ++P      ++GLLL
Sbjct: 72  LIADAWLGKFKTIVWLSIVYTIGQAVTSLSSVNELTDNNHDGTPDSLPVHVAVCMIGLLL 131

Query: 128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
           IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +INAGSL+ST ITP+ R   QC
Sbjct: 132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINAGSLLSTIITPMVRVQ-QC 189

Query: 188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
               ++AC+PLAFG+PA+LM +++IVFIIG  MYK  KP+GN+  +V +C   AIKN+F+
Sbjct: 190 GIHVKQACYPLAFGIPAILMAVSLIVFIIGSGMYKKFKPQGNILSKVVKCICFAIKNRFR 249

Query: 246 TKKSERTKE-HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQAN 304
            +  +  K  HWLD+A +KYD+  I  IK + R+L L++PLP+FWALFDQQGSRWT QA 
Sbjct: 250 HRSKQFPKRAHWLDWAKEKYDERLIAQIKMVTRVLFLYIPLPMFWALFDQQGSRWTLQAT 309

Query: 305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLL 363
            M GR+    LEI+PDQMQ +N +LI+  +P+   V+YPL+ KCGLN   L+K+T+G  L
Sbjct: 310 TMSGRI--GILEIQPDQMQTVNTILIIILVPIMDAVVYPLIAKCGLNFTSLKKMTIGMFL 367

Query: 364 AALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLAL 423
           A+++FV +A+++  I     + P+     +++ N    + +   P +          + L
Sbjct: 368 ASMAFVAAAILQVEIDKTLPVFPKANEVQIKVLNVGSENMIISLPGQT---------VTL 418

Query: 424 NNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGE 483
           N   ++ T  F    E + +    +N T  S V      +        E  Q H   +  
Sbjct: 419 NQ--MSQTNEFMTFNEDTLTS---INITSGSQVTMITPSL--------EAGQRHTLLVWA 465

Query: 484 FHDLRNINSSLKMQILYGS------ELQGKRITLESDDGFYQDIDLPTGACYTEYIEGI- 536
            ++ R +N  L  +   G           + I +      Y+ I     + Y  +  G+ 
Sbjct: 466 PNNYRVVNDGLTQKSDKGENGIRFVNTYSQPINVTMSGKVYEHIASYNASEYQFFTSGVK 525

Query: 537 -----PAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSML 591
                 AG+ E +         +E      Y++       P+       +D   N ++M 
Sbjct: 526 GFTVSSAGISE-QCRRDFESPYLEFGSAYTYLITSQATGCPQ---VTEFEDIPPNTMNMA 581

Query: 592 WLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIF 651
           W  PQY +IT+ E++FSITG EF+++QAP +MKS + A WLLT A GN+IV IVA A   
Sbjct: 582 WQIPQYFLITSGEVVFSITGLEFSYSQAPSNMKSVLQAGWLLTVAVGNIIVLIVAGAGQI 641

Query: 652 ENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDE 688
             Q  E++LFA+L++V   +FA++A  Y YV   E E
Sbjct: 642 NKQWAEYILFAALLLVVCVIFAIMARFYTYVNPAEIE 678

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. May constitute a major route for the absorption of protein digestion end-products.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q16348|S15A2_HUMAN Solute carrier family 15 member 2 OS=Homo sapiens GN=SLC15A2 PE=2 SV=2

 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 278/677 (41%), Positives = 414/677 (61%), Gaps = 22/677 (3%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
            YP ++ FIV+NEFCERF YYGM+ VL LY    L ++E T+T ++H ++ LCYF P+ G
Sbjct: 41  NYPLSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILG 100

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL--NIPKRTFTLVGLLLIAVGTGGI 135
             IAD++LGKF TI+ LS+VY+ G+V+ ++ A+  L   +     +L+GL LIA+GTGGI
Sbjct: 101 AAIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQVVHTVLSLIGLSLIALGTGGI 160

Query: 136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP 195
           KPCV++FGGDQF   + + +  ++FS+FY SINAGSLISTFITP+ R D+QCFG++ C+ 
Sbjct: 161 KPCVAAFGGDQF-EEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGED-CYA 218

Query: 196 LAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-E 254
           LAFGVP LLM +A++VF +G  +Y    P+GN+  +VF+C   AI N+FK +  +  K +
Sbjct: 219 LAFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQ 278

Query: 255 HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTS 314
           HWLD+A +KY +  I D+K L R+L L++PLP+FWAL DQQGSRWT QA RM+ R  G  
Sbjct: 279 HWLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMN-RNLGFF 337

Query: 315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSAL 373
           + ++PDQMQ++NPLL+L FIPLF +VIY LV KCG+N   LRK+ VG +LA L+F V+A 
Sbjct: 338 V-LQPDQMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAA 396

Query: 374 VEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNI-PINGTQ 432
           VE  I   +   P  +   L++ N  D D V  + + NE      + L + +I     T 
Sbjct: 397 VEIKINEMAPAQPGPQEVFLQVLNLAD-DEVKVTVVGNEN-----NSLLIESIKSFQKTP 450

Query: 433 HFAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRN 489
           H++ L   + S  +  +  + +  L  +  + E   Y L+  E   +    + +  + R 
Sbjct: 451 HYSKLHLKTKSQDFHFHLKYHNLSLYTEHSVQEKNWYSLVIREDGNSISSMMVKDTESRT 510

Query: 490 INSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKV 549
            N    ++ +  +  +   I+L +D       D    A  T      PA     R+E+K 
Sbjct: 511 TNGMTTVRFV-NTLHKDVNISLSTDTSLNVGEDYGVSAYRTVQRGEYPA--VHCRTEDKN 567

Query: 550 LKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSI 609
              N+ L D     L + T  + +   A  ++D  +NK+S+ W  PQY ++TA E+MFS+
Sbjct: 568 FSLNLGLLDFGAAYLFVITNNTNQGLQAWKIEDIPANKMSIAWQLPQYALVTAGEVMFSV 627

Query: 610 TGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDM 669
           TG EF+++QAP SMKS + A WLLT A GN+IV +VA+       A EF+LF+ L++V  
Sbjct: 628 TGLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWA-EFILFSCLLLVIC 686

Query: 670 GVFALLAMRYKYVEEDE 686
            +F+++   Y  V+ ++
Sbjct: 687 LIFSIMGYYYVPVKTED 703

Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
158300464	713	AGAP012154-PA [Anopheles gambiae str. PE	0.940	0.911	0.479	1e-173
345495080	699	PREDICTED: peptide transporter family 1-	0.939	0.928	0.466	1e-171
170031940	716	oligopeptide transporter [Culex quinquef	0.943	0.910	0.468	1e-171
195564958	683	GD16659 [Drosophila simulans] gi|1942034	0.926	0.937	0.472	1e-169
28571098	803	CG2930, isoform D [Drosophila melanogast	0.923	0.794	0.468	1e-168
195059924	795	GH17609 [Drosophila grimshawi] gi|193896	0.943	0.820	0.464	1e-168
193573527	679	PREDICTED: peptide transporter family 1-	0.947	0.964	0.470	1e-167
328793736	706	PREDICTED: peptide transporter family 1-	0.946	0.926	0.451	1e-167
380019719	704	PREDICTED: peptide transporter family 1-	0.962	0.944	0.455	1e-167
195133836	769	GI16478 [Drosophila mojavensis] gi|19390	0.950	0.854	0.463	1e-167

>gi|158300464|ref|XP_320378.4| AGAP012154-PA [Anopheles gambiae str. PEST] gi|157013172|gb|EAA00193.4| AGAP012154-PA [Anopheles gambiae str. PEST]

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 325/678 (47%), Positives = 438/678 (64%), Gaps = 28/678 (4%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
           +YP+++FFI+ NEF ERF YYGMRTVL+LY+   L Y   TATV++HI+T L YFFPL G
Sbjct: 3   RYPRSIFFIISNEFSERFNYYGMRTVLALYLTQKLAYSNDTATVIYHIFTSLAYFFPLMG 62

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKP 137
            I+AD++LGKF TI+ LSIVY  G+ L+ + AI PLN+P  + T++GLL IAVG+GGIKP
Sbjct: 63  AILADSWLGKFKTILYLSIVYCAGSTLIALGAIPPLNLPATSMTVLGLLFIAVGSGGIKP 122

Query: 138 CVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLA 197
           CVS+FGGDQF +PEQ+AQL KFFSLFYFSINAGSLIST +TPI R D+ CFG  +CF LA
Sbjct: 123 CVSAFGGDQFKLPEQAAQLAKFFSLFYFSINAGSLISTTLTPILREDVHCFGDNSCFSLA 182

Query: 198 FGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWL 257
           FGVPA+LM LAI++F+ G  MY I KP GN+ + VF+C   A+  + K + S   + HWL
Sbjct: 183 FGVPAVLMILAIVIFVCGGAMYTIKKPSGNMIVLVFKCIGNALAVRSK-ESSTSPRAHWL 241

Query: 258 DYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEI 317
           DYA  KY +G + DIK LL+IL+L++PLP+FWALFDQQGSRWTFQA RMDG + G +  I
Sbjct: 242 DYAESKYGKGIVADIKALLKILILYIPLPVFWALFDQQGSRWTFQATRMDGELAGYT--I 299

Query: 318 KPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFN 377
           KPDQMQ+INPLLIL FIP+F+ VIYP + K G+ RPL+KL++GGLLA  +FV+S  VE  
Sbjct: 300 KPDQMQVINPLLILAFIPVFESVIYPALAKIGIRRPLQKLSLGGLLAGAAFVLSGFVEIA 359

Query: 378 IRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPI-------NG 430
           + +   + P      LR++N + CD+ FH+ + N          A   + +       NG
Sbjct: 360 LDSTEAMLPAAHEAQLRVFNGLPCDYRFHTDIPNLAGFSVPSRGAYEALHVELPPGLANG 419

Query: 431 TQHFAALFEPS-TSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDL-- 487
           T  F A  E S   C       F  S     G    Y++ R   + + L    E+ D   
Sbjct: 420 TFQFRA--ETSEIGCVRENMTEFSGSFSLQAGGAVSYFISRKGGRSSLL----EYADTAA 473

Query: 488 RNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEY--IEGIPAGVYEVRS 545
           ++ N   +M++L       K+I+L  +     + D+       +Y  +  +  G Y V  
Sbjct: 474 KDRNGLPRMRLLANVRTT-KQISLRHNG----NADVVYNVALNQYDQLTSVTEGEYGVYV 528

Query: 546 ENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI 605
             + + + ++L    VY L L+     E    +      SN V MLWL PQY++ITA E+
Sbjct: 529 GERPI-ATVKLSPGGVYTLILDEFLENEFNL-QTHTITPSNSVHMLWLIPQYVVITAGEV 586

Query: 606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLM 665
           MFSITG EF+++QAP SMKS + A WLLT A GN++V  +AEAK  ++Q+ EF LFA+LM
Sbjct: 587 MFSITGLEFSYSQAPESMKSVIQAFWLLTVAIGNMLVVFIAEAKFVQSQSLEFFLFAALM 646

Query: 666 VVDMGVFALLAMRYKYVE 683
            +DMG+F +LAMRY+Y +
Sbjct: 647 FLDMGLFMVLAMRYRYSD 664

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495080|ref|XP_001603652.2| PREDICTED: peptide transporter family 1-like [Nasonia vitripennis]

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 324/694 (46%), Positives = 444/694 (63%), Gaps = 45/694 (6%)

Query: 15  EQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFP 74
           ++ KYPK+VFFI+ NEFCERF YYGMRTVLS Y+  +LLY +  ATV++H +T   YFFP
Sbjct: 10  QKLKYPKSVFFIICNEFCERFSYYGMRTVLSFYLVDILLYTQTMATVIYHTFTMFAYFFP 69

Query: 75  LFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG 134
           L G ++AD+YLGK+ TI+ LS+VY  G +LL V+++ PL +P R F+++GLL+IA+GTGG
Sbjct: 70  LLGAMLADSYLGKYRTILYLSVVYAAGQLLLAVSSVPPLGLPVREFSILGLLMIALGTGG 129

Query: 135 IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACF 194
           IKPCV++FGGDQF +P+Q   L  FFSLFYFSIN+GSLIST ITP+ R ++ C+G   C+
Sbjct: 130 IKPCVAAFGGDQFKLPQQEHYLAVFFSLFYFSINSGSLISTAITPVLRKEVTCYGMTTCY 189

Query: 195 PLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKE 254
           PLAF VPA+LM ++I++F  GK +YKI +P+GNV ++V  C   AI  K K+K     +E
Sbjct: 190 PLAFLVPAVLMTVSIVIFFAGKRLYKIRQPEGNVVVKVVLCISHAIGRKIKSKGK---RE 246

Query: 255 HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTS 314
           HWLDY++DKYD+  IEDIK++L++L+LFVPLP FWALFDQQGSRWTFQA+RMDG VFG  
Sbjct: 247 HWLDYSDDKYDRHLIEDIKSVLKVLVLFVPLPFFWALFDQQGSRWTFQASRMDGEVFG-- 304

Query: 315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDK-CGLNRPLRKLTVGGLLAALSFVVSAL 373
             IKPDQ Q+INPL I+ FIP+FQ+ IYP+++K   LN PLRK+T GG+LA LSF++SA+
Sbjct: 305 YLIKPDQFQVINPLFIVIFIPVFQWAIYPILEKFLYLNTPLRKMTAGGILAGLSFIISAI 364

Query: 374 VEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVF---HSPLKNERVLRAMDMLALNNIPING 430
           VE NI     + P      +RI+N+++C        S  K    L A++M+    +P+N 
Sbjct: 365 VELNIEPTYAVQPSQGLAQIRIFNTINCPASLTLGSSTNKTSYSLEALNMIQDLYVPVNN 424

Query: 431 TQHFAALFEPSTSCPY-------------VLNKTFQSSVLGADGKITEYYLIRDEKQQAH 477
           +     L    T C               ++ KT  S  L  +G ++  +    EK    
Sbjct: 425 SSTVLTLDAKYTDCKQLPGGTLTVSENLTLVEKTATSWALTIEG-LSPPFADSVEKSGTG 483

Query: 478 --LKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEG 535
               R   +     INS++     +  E + +             I++     +TE+ + 
Sbjct: 484 DPFVRALIYKTTSKINSTIN----FNGEKENQ-------------INITKKLQFTEF-DK 525

Query: 536 IPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFP 595
           I    Y +  + K ++ N+  +   VY  N+   AS     A+ +     N V M WL P
Sbjct: 526 INHNPYNITLDGKPVEDNVFFRFGGVY--NIIGYASDTDAAAKTVTLADPNSVHMFWLMP 583

Query: 596 QYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQA 655
           QY++IT  EIMFSITG EFAFTQAPV+MKS + A WLL+ AFGNLIV I+AEA  F+ Q 
Sbjct: 584 QYVVITMGEIMFSITGLEFAFTQAPVTMKSLLQASWLLSVAFGNLIVVIIAEAAFFDRQV 643

Query: 656 YEFLLFASLMVVDMGVFALLAMRYKYVEEDEDED 689
           +EF LFA LM VDM +FA++A  YKYVE   + +
Sbjct: 644 FEFFLFAGLMFVDMIIFAIMARCYKYVEPVSNNE 677

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031940|ref|XP_001843841.1| oligopeptide transporter [Culex quinquefasciatus] gi|167871421|gb|EDS34804.1| oligopeptide transporter [Culex quinquefasciatus]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 317/676 (46%), Positives = 436/676 (64%), Gaps = 24/676 (3%)

Query: 15  EQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFP 74
           E  +YPK++FFI+ NEF ERF YYGMRTVL+LY+   L YD+ TATV++HI+T L YFFP
Sbjct: 3   EPVRYPKSIFFIISNEFSERFNYYGMRTVLALYLTQKLNYDDDTATVIYHIFTSLAYFFP 62

Query: 75  LFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG 134
           L G I+AD++LGKF TI+ LSIVY  G+ L+ + AI PLN+P  + T++GLL IAVG+GG
Sbjct: 63  LMGAILADSWLGKFKTILYLSIVYCIGSTLIALGAIPPLNLPATSMTVLGLLFIAVGSGG 122

Query: 135 IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACF 194
           IKPCVS+FGGDQF +PEQ+ QL KFFSLFYF+INAGSLIST +TPI R D+ CF    CF
Sbjct: 123 IKPCVSAFGGDQFKLPEQAVQLAKFFSLFYFAINAGSLISTSLTPILREDVHCFNDPDCF 182

Query: 195 PLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERT-- 252
            LAFGVPA+LM L+I VF+ GK MY I KP GN+ + VF+C    I N   T+  ER   
Sbjct: 183 SLAFGVPAVLMILSIFVFVCGKSMYMIKKPAGNMVVLVFKC----IGNALSTRMKEREVN 238

Query: 253 -KEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVF 311
            + HWLDYA  KY +  + DIK+L++IL+L++PLP+FWALFDQQGSRWTFQA RM+G + 
Sbjct: 239 PRSHWLDYAESKYGRKIVADIKSLMKILVLYIPLPVFWALFDQQGSRWTFQATRMNGEI- 297

Query: 312 GTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVS 371
             +  IKPDQMQ+INPLLIL FIP F+ ++YP+++K G+  PL+KLT GG+LA  +FV+S
Sbjct: 298 -GAFTIKPDQMQVINPLLILAFIPFFEGLVYPILEKLGVRTPLQKLTFGGILAGAAFVIS 356

Query: 372 ALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGT 431
             VE  +   + + P      LRIYN + CD+ F + + N        + A  NI +N  
Sbjct: 357 GFVEIALDKTNAVMPAPHESQLRIYNGLPCDYHFKTDVPNSSNFTVQSLGAFENIHVNTM 416

Query: 432 QHFAALFEPSTS---CPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDL- 487
           Q+    F  +T+   C      T   +     G    +++     Q+A+   L ++ D  
Sbjct: 417 QNTTFRFTATTNETFCVKANMSTINGTFYLQPGHSISHFI----NQKANKANLQQYTDSV 472

Query: 488 -RNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSE 546
            ++     +++IL   +   K +     + +Y+D          + +  +  G Y++ S 
Sbjct: 473 EKDKRGLPRIRILANIKTTAKVLL---KNNWYKDSHYNVTLNKIDQLS-VADGEYDIFSH 528

Query: 547 NKVLK-SNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI 605
           N   K ++M+L+   VY + L+     E    R      SN + MLWL PQY++ITA E+
Sbjct: 529 NGTRKIASMKLELGGVYTIILHEVLENEFMLQR-HTVTPSNSLHMLWLVPQYVVITAGEV 587

Query: 606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLM 665
           MFSITG +F+++QAP SMKS + A WLLT AFGN++V  +AEAK  ++Q+ EF LFA LM
Sbjct: 588 MFSITGLQFSYSQAPESMKSVIQAFWLLTVAFGNMLVVFIAEAKFVQSQSVEFFLFAILM 647

Query: 666 VVDMGVFALLAMRYKY 681
            +DM +F +LA RYKY
Sbjct: 648 FLDMALFMILATRYKY 663

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195564958|ref|XP_002106074.1| GD16659 [Drosophila simulans] gi|194203445|gb|EDX17021.1| GD16659 [Drosophila simulans]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 322/681 (47%), Positives = 440/681 (64%), Gaps = 41/681 (6%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+VFFI+ NEFCERF YYGMRTVL LY+  VL Y + TATV+FHI+T   YF  +FG 
Sbjct: 4   YPKSVFFIISNEFCERFNYYGMRTVLVLYLSRVLGYSDDTATVVFHIFTMFVYFLCVFGA 63

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
           II+D++LGKF TI+ LS+VY+ G+VLLT+ AI PLN+P  TFT++GL LIA+G+GGIKPC
Sbjct: 64  IISDSWLGKFKTILYLSLVYICGSVLLTLGAIRPLNLPMETFTMMGLALIALGSGGIKPC 123

Query: 139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
           VS+FGGDQF VPEQ  Q+  FFSLFYFSINAGSLIST +TPI R D+ CF    C+PLAF
Sbjct: 124 VSAFGGDQFKVPEQVKQITSFFSLFYFSINAGSLISTTVTPILREDVSCFDDINCYPLAF 183

Query: 199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
           GVPA+LM +++I+F++G+ +YK+  P GN+ + V      A+  K K KK+   +EHWLD
Sbjct: 184 GVPAVLMIVSVIIFVLGRSLYKMKPPAGNMVVLVSSTIWTALTTKCKEKKTN-PREHWLD 242

Query: 259 YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
           YA+ KYD+  I+D+K L+R+L L++PLP+FWALFDQQGSRWTFQA RMDG +   S +IK
Sbjct: 243 YADRKYDRQLIDDVKVLMRVLFLYLPLPVFWALFDQQGSRWTFQATRMDGDM--GSWDIK 300

Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNI 378
           PDQ+Q++NPLLIL FIPL+    YP++   G+ RPL+KLT+GG+LA ++F++S +VE ++
Sbjct: 301 PDQLQVLNPLLILIFIPLYDVAFYPVLKLVGIRRPLQKLTMGGILAGIAFIISGVVELSL 360

Query: 379 RAHSQIAPQDRHFSLRIYNSM-DCDFVFHSPL--KNERVLRAMDMLALNNIP--INGTQH 433
                + P   +  LR+++ + DCD+ F + L  +    LR +D     ++    +GT  
Sbjct: 361 EHTYPLIPSSGNTQLRVFSGIPDCDYRFSTNLGARESFTLRGLDFYYSGSVATSTDGTFQ 420

Query: 434 FAALFEPSTSCPYVL--------NKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFH 485
                E  T    +L          T  S  L     IT+Y+   DE Q+++ +      
Sbjct: 421 LTYSVESLTEGCVILEGGTQQLYEATAHSLFLRPSHAITKYWY-EDEVQKSN-RSWAFVR 478

Query: 486 DLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRS 545
           +L N+             L   R+    D G    +DLP        +  +  G Y V+ 
Sbjct: 479 NLANL-------------LATTRVVWREDSGDTVALDLP---ARNHDLYELSTGDYNVQV 522

Query: 546 ENKVLKSNMELQDDNVYVLNLNTEASPEHRT--ARLLKDDSSNKVSMLWLFPQYIIITAA 603
            +  L S +EL+   VY L +       H T  +RL++  S N V MLWL PQY+++T  
Sbjct: 523 ADHNLTS-IELRAGGVYALLIGQ----SHGTFVSRLIEVTSPNSVHMLWLVPQYVVMTLG 577

Query: 604 EIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFAS 663
           E+MFS+TG EF+++Q+P SMKS + ACWLLT AFGN+IV +VAE K F++QA EF LFA 
Sbjct: 578 EVMFSVTGLEFSYSQSPPSMKSVLQACWLLTVAFGNVIVVVVAELKFFDSQASEFFLFAG 637

Query: 664 LMVVDMGVFALLAMRYKYVEE 684
           LM VDM VF  +A  YK  +E
Sbjct: 638 LMFVDMLVFMFVAYYYKPYDE 658

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28571098|ref|NP_788855.1| CG2930, isoform D [Drosophila melanogaster] gi|28381558|gb|AAN09112.2| CG2930, isoform D [Drosophila melanogaster]

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 320/683 (46%), Positives = 440/683 (64%), Gaps = 45/683 (6%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+VFFI+ NEFCERF YYGMRTVL LY+  VL Y + TATV+FHI+T   YF  +FG 
Sbjct: 124 YPKSVFFIISNEFCERFNYYGMRTVLVLYLSRVLGYSDDTATVVFHIFTMFVYFLCVFGA 183

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
           II+D++LGKF TI+ LS+VY+ G+VLLT+ AI PLN+P  TFT++GL LIA+G+GGIKPC
Sbjct: 184 IISDSWLGKFKTILYLSLVYICGSVLLTLGAIGPLNLPMETFTMLGLALIALGSGGIKPC 243

Query: 139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
           VS+FGGDQF VPEQ  Q+  FFSLFYFSINAGSLIST +TPI R D+ CF    C+PLAF
Sbjct: 244 VSAFGGDQFKVPEQVKQITSFFSLFYFSINAGSLISTTVTPILREDVSCFDDINCYPLAF 303

Query: 199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
           GVPA+LM +++I+F++G+ +YK+  P GN+ + V      A+  K K KK+   +EHWLD
Sbjct: 304 GVPAVLMIVSVIIFVLGRSLYKMKPPAGNMVVLVSSTIWTALTTKCKEKKT-NPREHWLD 362

Query: 259 YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
           YA+ KYD+  I+D+K L+R+L L++PLP+FWALFDQQGSRWTFQA RMDG +   S +IK
Sbjct: 363 YADKKYDRQLIDDVKVLMRVLFLYLPLPVFWALFDQQGSRWTFQATRMDGDM--GSWDIK 420

Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNI 378
           PDQ+Q++NPLLIL FIPL+   +YP +   G+ RPL+KLT+GG+LA ++F++S +VE ++
Sbjct: 421 PDQLQVLNPLLILIFIPLYDVALYPALKLVGIRRPLQKLTMGGILAGIAFIISGVVELSL 480

Query: 379 RAHSQIAPQDRHFSLRIYNSM-DCDFVFHSPL--KNERVLRAMDMLALNNIPINGTQHF- 434
                + P   +  LR+++ + DCD+ F + L  +    LR +D     ++  N    F 
Sbjct: 481 EHTYPLIPSSGNTQLRVFSGIPDCDYRFSTNLGARESFTLRGLDFYYSGSVATNTDGIFQ 540

Query: 435 -----------AALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGE 483
                       A+ E  T   Y    T  S  L     IT+++   DE Q+++ +    
Sbjct: 541 LTYTVESLTEGCAILEGGTQQLY--EATAHSLFLRPSHAITKFWY-EDEVQKSN-RSWAF 596

Query: 484 FHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEV 543
             +L N+             L   R+    D G    +DLP        +  +  G Y V
Sbjct: 597 VRNLANL-------------LATTRVVWREDSGDTVALDLP---ARNHDLYELSTGGYNV 640

Query: 544 RSENKVLKSNMELQDDNVYVLNLNTEASPEHRT--ARLLKDDSSNKVSMLWLFPQYIIIT 601
           +  +  L S +EL+   VY L +       H T  +R+++  S N + MLWL PQY+++T
Sbjct: 641 QVADHNLTS-IELRAGGVYALLIGQ----SHGTFVSRIIEVTSPNSMHMLWLVPQYVVMT 695

Query: 602 AAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLF 661
             E+MFS+TG EF+++Q+P SMKS + ACWLLT AFGN+IV +VAE K F++QA EF LF
Sbjct: 696 LGEVMFSVTGLEFSYSQSPPSMKSVLQACWLLTVAFGNVIVVVVAELKFFDSQASEFFLF 755

Query: 662 ASLMVVDMGVFALLAMRYKYVEE 684
           A LM VDM VF  +A  YK  +E
Sbjct: 756 AGLMFVDMLVFMFVAYYYKPYDE 778

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195059924|ref|XP_001995722.1| GH17609 [Drosophila grimshawi] gi|193896508|gb|EDV95374.1| GH17609 [Drosophila grimshawi]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 316/680 (46%), Positives = 437/680 (64%), Gaps = 28/680 (4%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+VFFI+ NEFCERF YYGMRTVL LY+   L Y + TATV+FHI+T   YF  +FG 
Sbjct: 107 YPKSVFFIISNEFCERFNYYGMRTVLVLYLSRKLGYSDDTATVVFHIFTMFVYFLCVFGA 166

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
           II+D++LGKF TI+ LSIVY+ G+VLLT+ AI PLN+P  TFT++GL LIA+G+GGIKPC
Sbjct: 167 IISDSWLGKFKTILYLSIVYICGSVLLTLGAIGPLNLPMETFTILGLALIALGSGGIKPC 226

Query: 139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
           VS+FGGDQF VPEQ  Q+  FFSLFYF+INAGSLIST +TPI R D+ CF    C+PLAF
Sbjct: 227 VSAFGGDQFKVPEQLKQITSFFSLFYFAINAGSLISTTVTPILREDVHCFDDINCYPLAF 286

Query: 199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
           GVPA+LM ++++VF++G+P+YKI  P GN+ +EV      AI  K + KK+   +EHWLD
Sbjct: 287 GVPAILMIISVVVFVLGRPLYKIKPPAGNMVVEVSGTIWTAITTKCREKKT-NPREHWLD 345

Query: 259 YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
           YA+ KY++  I D+K L+R+L L++PLP+FWALFDQQGSRWTFQA RMDG +   S ++K
Sbjct: 346 YADHKYERQRIADVKVLMRVLFLYLPLPVFWALFDQQGSRWTFQATRMDGNM--GSWDLK 403

Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNI 378
           PDQ+Q++NPLLIL FIPL+    YP +   G+ RPL+KLT+GG+LA ++F++S +VE N+
Sbjct: 404 PDQLQVLNPLLILAFIPLYDLAFYPALSLIGIRRPLQKLTMGGILAGIAFIISGIVELNL 463

Query: 379 RAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALF 438
                  P  ++  LR++NS +C + F + +      +     A     +     F   +
Sbjct: 464 EKTYPALPYGQNAQLRVFNSDNCVYNFATNIDGLASFKVEPYSAYTKKDVYVPGSFDLKY 523

Query: 439 EPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQA------HLKRLGEFHDL-RNIN 491
             ST+ P   +   Q+  L  D K    +L       A       + +  E + L RNI 
Sbjct: 524 SISTTDPACKSYAEQTHTL-TDKKAWSLFLNGRNDTNAVFWETDFVNKPSEGYPLVRNI- 581

Query: 492 SSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLK 551
                    G+  Q + I   S  G Y+       A  T+ ++ + +  Y+V  +N  L 
Sbjct: 582 ---------GNVQQYREIVWSSKSGRYE-----FNANETKLLK-VSSSDYDVSIDNYSL- 625

Query: 552 SNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITG 611
             + ++   VY L +N   +  +    L++    N ++MLWL PQY+++T  E+MFS+TG
Sbjct: 626 GKVSVRTGGVYTLLVNELPNGGYAKLELIEVTEPNSMNMLWLIPQYVVMTLGEVMFSVTG 685

Query: 612 FEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGV 671
            EF++ QAP SMKS + ACWLLT AFGN+IV I+AEA +FE+QA EF LFA LM VDM V
Sbjct: 686 LEFSYAQAPASMKSVLQACWLLTVAFGNVIVVIIAEAALFESQASEFFLFAGLMFVDMLV 745

Query: 672 FALLAMRYKYVEEDEDEDHE 691
           F  +A  YK  + ++ E+ E
Sbjct: 746 FMFMAYNYKPNDPNKPEEIE 765

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193573527|ref|XP_001946019.1| PREDICTED: peptide transporter family 1-like [Acyrthosiphon pisum]

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/667 (47%), Positives = 438/667 (65%), Gaps = 12/667 (1%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+V+FI+  EFCERF YYG+RTVL LY+  +L YDE  +T+++H+   + YF PLFG 
Sbjct: 3   YPKSVWFIICTEFCERFSYYGLRTVLVLYLTSILQYDEDESTIIYHMAVFMAYFSPLFGA 62

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVT--AIDPLNIPKRTFTLVGLLLIAVGTGGIK 136
           I++D++LGKF TIV LS++Y  GN+++T +  A+      +R   L+GL+LIA+GTGGIK
Sbjct: 63  ILSDSFLGKFKTIVYLSLIYAVGNLVITGSSLAVSFSLSNQRYLALLGLVLIAIGTGGIK 122

Query: 137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
           PCVSSFGGDQF +P Q   L+KFFS+FYFSINAGSLIST +TP  R  +QCFG+ +CFPL
Sbjct: 123 PCVSSFGGDQFDLPAQEVYLQKFFSIFYFSINAGSLISTSVTPELRKGVQCFGRTSCFPL 182

Query: 197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHW 256
           AFGVPA+LM +AI +F+ GK +YKI KP+ NV +  F C   AIK +     S   K HW
Sbjct: 183 AFGVPAVLMLIAIFIFVCGKRLYKIKKPESNVIVTSFSCIYHAIKRRLSYVSSNTKKSHW 242

Query: 257 LDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLE 316
           L+YA+DK+ +  I DI+  L ++ LF+P P FWALFDQQGSRWT QA  M+GR+   +  
Sbjct: 243 LNYADDKFSEKEITDIRGALDVMYLFIPFPFFWALFDQQGSRWTLQATLMNGRINFLNWT 302

Query: 317 IKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEF 376
           +KPDQMQ++NPLL+L FIP+F+ V+YPL+ K G+ +PL+K+++GG LAAL+FV+SA+V+ 
Sbjct: 303 MKPDQMQVMNPLLVLLFIPVFETVVYPLMAKIGIKKPLQKISLGGFLAALAFVLSAVVQN 362

Query: 377 NIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAA 436
            I   S I   D    LR++N  DC+   +S       L +++ L +     +    F  
Sbjct: 363 KIIGGS-IQLSDGEGQLRVFNGFDCNITINSTNLPVYKLSSLETLEIRYTTTSNETSFPI 421

Query: 437 LFEPSTSC-PYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDL-RNINSSL 494
           +F    SC P +      SSV   +GK T Y+L R  K +  LKR+G   DL +  N S 
Sbjct: 422 VFIADPSCSPNLSTLNLTSSVSIVEGKATSYFLTR-LKDKLELKRIGYVDDLAKPKNGSP 480

Query: 495 KMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNM 554
            ++IL   +L  K +TL+  D      ++   +  T     +P G Y+   +N+ + S++
Sbjct: 481 VLRILNSDDLSNKVLTLKDTDNNSTVTEINLKSLTT---NTVPIGKYKAFLDNEFI-SDL 536

Query: 555 ELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEF 614
            L   +V  L L  + +  H  ++L+  +  N + + W  PQ I++TAAEIMFSIT  EF
Sbjct: 537 NLLPASVNTLVL--QRNLGHTDSKLVVLERGNFIHIAWQIPQIIVMTAAEIMFSITSLEF 594

Query: 615 AFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFAL 674
           AFTQAP SMKS ++A  LLT AFGNL+V IV+E + FENQAYE+LLFA LMV+DM +F L
Sbjct: 595 AFTQAPTSMKSLLAAVNLLTVAFGNLMVVIVSEVRYFENQAYEYLLFAGLMVLDMLIFIL 654

Query: 675 LAMRYKY 681
           ++ +YKY
Sbjct: 655 MSCKYKY 661

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793736|ref|XP_001120964.2| PREDICTED: peptide transporter family 1-like [Apis mellifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 317/702 (45%), Positives = 450/702 (64%), Gaps = 48/702 (6%)

Query: 12  SPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCY 71
           + +++ KYPK++FFIV NEFCERF YYGMRT+L+LY+   L+Y   T+TV++H+++ + Y
Sbjct: 7   TDTKKMKYPKSIFFIVSNEFCERFSYYGMRTILTLYLKNQLMYSSNTSTVIYHVFSMMVY 66

Query: 72  FFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVG 131
           FFPLFG ++AD+      TI  LSIVY  G +LL+++A  PL +P R  +L+ LLLIA+G
Sbjct: 67  FFPLFGAMLADSXXXXXXTIFYLSIVYAIGQILLSLSAAPPLGLPSRECSLLSLLLIAIG 126

Query: 132 TGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE 191
           TGGIKPCV++FGGDQF++P+Q   L  FFSLFYFSIN+GSLIS+F+ PI R+D+ CFG+ 
Sbjct: 127 TGGIKPCVAAFGGDQFMLPQQERYLSTFFSLFYFSINSGSLISSFLMPIIRNDIACFGEN 186

Query: 192 ACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSER 251
            C+ LAF VPA+LM L+II+FI GKP+YKI KP GNV L V +C   AI  K  +K  + 
Sbjct: 187 TCYSLAFFVPAVLMILSIILFIFGKPLYKIVKPTGNVVLNVSKCISHAIYKKITSKNVK- 245

Query: 252 TKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVF 311
            K++WLDYA+DKYD+  I DIK  L++++LF+P+PIFWALFDQQGSRWTFQA RM+G + 
Sbjct: 246 -KDYWLDYADDKYDKLLINDIKAALQVMILFIPIPIFWALFDQQGSRWTFQATRMNGEI- 303

Query: 312 GTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVS 371
           G  L ++PDQMQ+ NP L+L FIPLF+  +YP++ K G   PLR + +GG LAALSFV++
Sbjct: 304 GNFL-LQPDQMQVFNPFLVLAFIPLFETCLYPIMMKFGFRTPLRIMVIGGFLAALSFVIA 362

Query: 372 ALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER--------VLRAMDMLAL 423
           A+VEF + +   + P      LRI+N+++C       L++E         ++++MDM   
Sbjct: 363 AIVEFQLESTYPVLPSKDFAQLRIFNTLNCS--IEGKLRDENELSQELSFIVKSMDMWEN 420

Query: 424 NNIPINGTQHF-----------AALFEPSTS----CPYVLNKTFQSSVLGADGKITEYYL 468
             I  NG ++F           A +   S++      +V+     S ++  +G   +YY 
Sbjct: 421 KYIKANGQKNFSYEVNFKTCNEAGITNISSNKINGIIFVIEAEANSWIITPEG-FVDYY- 478

Query: 469 IRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGAC 528
               K      R G+          L   +++ + L+   + L  D   +  + +     
Sbjct: 479 ----KDSIDKSRTGD---------PLVRGLIFVNTLKSISLELMKDGTSFLKLMMNGTFD 525

Query: 529 YTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRT-ARLLKDDSSNK 587
             E +  I   +Y++    K ++SN+  +   VY +     +  E++T A ++     N 
Sbjct: 526 KNEELNSIKPNIYDIHLNGKKVQSNIPFKLGGVYTI---VGSVIENKTNAAMVTVTDPNS 582

Query: 588 VSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAE 647
           V +LWL PQY+IIT +E+MFS+TG EFAFTQAP SMKS + ACWLLT AFGNLIV IVAE
Sbjct: 583 VHILWLIPQYVIITMSEVMFSVTGLEFAFTQAPSSMKSLLQACWLLTVAFGNLIVVIVAE 642

Query: 648 AKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDED 689
             IF  QAYEFLLFA LM +D+ +FA++A  YKYV   E+E+
Sbjct: 643 VSIFNRQAYEFLLFAGLMFIDVIIFAVMAKLYKYVNTPENEE 684

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019719|ref|XP_003693750.1| PREDICTED: peptide transporter family 1-like [Apis florea]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 314/689 (45%), Positives = 445/689 (64%), Gaps = 24/689 (3%)

Query: 12  SPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCY 71
           + +++ KYPK++FFIV NEFCERF +YGMRT+L+LY+   L+Y   T+TV++HI++ + Y
Sbjct: 7   TDTKKMKYPKSIFFIVSNEFCERFSFYGMRTILTLYLKNQLMYSSNTSTVIYHIFSMMVY 66

Query: 72  FFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVG 131
           FFPLFG ++AD+ LGKF TI  LSI+Y  G +LL+++A  PL +P    +L+ LLLIA+G
Sbjct: 67  FFPLFGAMLADSLLGKFRTIFYLSIIYAIGQILLSLSA-APLGLPSNECSLLSLLLIAIG 125

Query: 132 TGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE 191
           TGGIKPCV++FGGDQF++P+Q   L  FFSLFYFSIN+GSLIS+F+ PI R+D+ CFG+ 
Sbjct: 126 TGGIKPCVAAFGGDQFVLPQQERYLSTFFSLFYFSINSGSLISSFLMPIIRNDIACFGEN 185

Query: 192 ACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSER 251
            C+ LAF VPA+LM L+II+F+ GKPMYKI KP GNV L V +C   AI  K  +K  +R
Sbjct: 186 TCYSLAFFVPAVLMILSIILFVFGKPMYKIVKPTGNVVLNVSKCISHAIYRKVTSKDVKR 245

Query: 252 TKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVF 311
             ++WLDYA+DKYD+  I DIK  L++++LF+P+PIFWALFDQQGSRWT QA +M+G + 
Sbjct: 246 --DYWLDYADDKYDKLLINDIKAALQVMILFIPIPIFWALFDQQGSRWTVQATKMNGEI- 302

Query: 312 GTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVS 371
           G  L ++PDQMQ+ NP  +L FIPLF+  +YP++ K G   PLR + +GG LAALSFVV+
Sbjct: 303 GNFL-LQPDQMQVFNPFFVLAFIPLFETCLYPIMMKFGFRTPLRIMVIGGFLAALSFVVA 361

Query: 372 ALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER-----VLRAMDMLALNNI 426
           A+VEF + +   + P      LRI+N+++C       ++NE      V+++MDM     I
Sbjct: 362 AIVEFQLESTYPVLPSKDFSQLRIFNTLNCSVEGKLQVENELEELSFVVKSMDMWENKYI 421

Query: 427 PINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKIT------EYYLIRDEKQQAHLKR 480
             NG ++F  L    T     +   F + +   DGKI+        ++I  +    H K 
Sbjct: 422 KTNGQKNFNYLINFKTCNEAGITNIFSNEI---DGKISISEAEANSWIITPKGLSDHYK- 477

Query: 481 LGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGV 540
             +  D       L   +++ +  +   + L  D      + + +     E ++ I    
Sbjct: 478 --DSVDKSRTGDPLVRGLIFVNTSESVSLELMKDGISSLKLMINSSFDTIEELKLIKPNR 535

Query: 541 YEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIII 600
           Y++   N+ ++SN+  +   VY   +        + A ++     N + +LWL PQYIII
Sbjct: 536 YDIYLNNEKVQSNVPFKLGGVY--TIVGSVFENKKNAAVVTVTDPNSIHILWLIPQYIII 593

Query: 601 TAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLL 660
           T +E+MFS+TG EFAFTQAP SMKS + ACWLLT AFGNLIV IVAE  IF  Q YEFLL
Sbjct: 594 TMSEVMFSVTGLEFAFTQAPSSMKSLLQACWLLTVAFGNLIVVIVAEVSIFNRQVYEFLL 653

Query: 661 FASLMVVDMGVFALLAMRYKYVEEDEDED 689
           FA LM +D+ +FA++A  YKYV   ++E+
Sbjct: 654 FAGLMFIDVIIFAVMAKLYKYVNTPKNEE 682

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133836|ref|XP_002011345.1| GI16478 [Drosophila mojavensis] gi|193907320|gb|EDW06187.1| GI16478 [Drosophila mojavensis]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 313/676 (46%), Positives = 440/676 (65%), Gaps = 19/676 (2%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
           YPK+VFFI+ NEFCERF YYGMRTVL LY+   L Y + TATV+FH++T   YF  +FG 
Sbjct: 84  YPKSVFFIISNEFCERFNYYGMRTVLVLYLSRQLGYSDDTATVVFHVFTMFVYFLCVFGA 143

Query: 79  IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
           II+D++LGKF TI+ LS+VY+GG+VLLT+ AI PL++P  TFT++GL LIA+G+GGIKPC
Sbjct: 144 IISDSWLGKFKTILYLSLVYIGGSVLLTLGAIGPLSLPVETFTILGLALIALGSGGIKPC 203

Query: 139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
           VS+FGGDQF VPEQ  Q+  FFSLFYF+INAGSLIST +TPI R D+ CF    C+PLAF
Sbjct: 204 VSAFGGDQFKVPEQLKQITSFFSLFYFAINAGSLISTTVTPILREDVHCFDDINCYPLAF 263

Query: 199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
           GVPA+LM ++++VF++G+P+YKI  P GN+ + V      AI  K K KK+   +EHWLD
Sbjct: 264 GVPAILMIISVVVFVLGRPLYKIKPPAGNMVVLVSSTIWTAITTKCKEKKT-NPREHWLD 322

Query: 259 YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
           YA+ KYD+  IED+K L+R+L L++PLP+FWALFDQQGSRWTFQA RMDG +   S ++K
Sbjct: 323 YADKKYDRKMIEDVKVLMRVLFLYLPLPVFWALFDQQGSRWTFQATRMDGDM--GSWDLK 380

Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNI 378
           PDQ+Q++NPLLIL FIPL+    YP +   G+ RPL+KLT+GG+LA ++F++S +VE N+
Sbjct: 381 PDQLQVLNPLLILVFIPLYDVAFYPALRLIGIRRPLQKLTMGGILAGIAFIISGIVELNL 440

Query: 379 RAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLK--NERVLRAMDMLALNNIPINGTQHFA- 435
                  P  ++  LRI+N   C + F + L+  +   L    M    +I +        
Sbjct: 441 EKTYPQLPYGQNVQLRIFNPESCAYTFKTNLESLDSWKLEPYSMQVEKHIYVKDKIELKY 500

Query: 436 ALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLK 495
            +     +CP   + T    VL  +   + +   R+E          + +  +  +S   
Sbjct: 501 EIISTDPACPEYKDGT---QVLTENAAWSLFLNARNETVPGSDSFWLKDYVNKPSDSYPL 557

Query: 496 MQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNME 555
           ++ L   + Q +RI  +S+   Y+       A  T  +  + +G Y V  +NK L     
Sbjct: 558 VRTLANVQ-QQRRIVWKSNKEQYE-----YNANETNLVR-VASGDYAVSIDNK-LVGQFS 609

Query: 556 LQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFA 615
           +    VY L +N E + ++   R+++    N +++LWL PQY+++T  E+MFS+TG EF+
Sbjct: 610 VHTGGVYTLLIN-EVNDDY-AHRMIEVTEPNSMNILWLIPQYVVMTLGEVMFSVTGLEFS 667

Query: 616 FTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALL 675
           + QAP SMKS + ACWLLT AFGN+IV I+AEA +FE+QA EF LFA LM VDM +F  +
Sbjct: 668 YAQAPPSMKSVLQACWLLTVAFGNVIVVIIAEAALFESQADEFFLFAGLMFVDMLLFMFM 727

Query: 676 AMRYKYVEEDEDEDHE 691
           A  YK  + ++ E+ E
Sbjct: 728 AYNYKPNDPNKSEEVE 743

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
FB|FBgn0028491	810	CG2930 [Drosophila melanogaste	0.927	0.791	0.444	4.4e-139
ZFIN|ZDB-GENE-030131-5866	719	slc15a2 "solute carrier family	0.933	0.897	0.392	6.9e-118
UNIPROTKB|Q16348	729	SLC15A2 "Solute carrier family	0.946	0.897	0.389	3.8e-117
UNIPROTKB|F1P0K5	714	SLC15A1 "Uncharacterized prote	0.568	0.550	0.463	9.8e-116
UNIPROTKB|F1MPK7	737	SLC15A2 "Uncharacterized prote	0.936	0.877	0.391	1.5e-115
RGD|61972	729	Slc15a2 "solute carrier family	0.976	0.925	0.382	3.9e-115
UNIPROTKB|G3V6A7	740	Slc15a2 "Solute carrier family	0.976	0.912	0.382	3.9e-115
UNIPROTKB|P46059	708	SLC15A1 "Solute carrier family	0.542	0.529	0.459	8.7e-115
UNIPROTKB|E2QWX1	740	SLC15A2 "Uncharacterized prote	0.930	0.868	0.388	1.3e-114
UNIPROTKB|A5A4L7	729	slc15A2 "Uncharacterized prote	0.945	0.895	0.383	1.7e-114

FB|FBgn0028491 CG2930 [Drosophila melanogaster (taxid:7227)]

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 307/690 (44%), Positives = 418/690 (60%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YPK+VFFI+ NEFCERF YYGMRTVL LY+  VL Y + TATV+FHI+T   YF  +FG 
Sbjct:   124 YPKSVFFIISNEFCERFNYYGMRTVLVLYLSRVLGYSDDTATVVFHIFTMFVYFLCVFGA 183

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPC 138
             II+D++LGKF TI+ LS+VY+ G+VLLT+ AI  LN+P  TFT++GL LIA+G+GGIKPC
Sbjct:   184 IISDSWLGKFKTILYLSLVYICGSVLLTLGAIGRLNLPMETFTMLGLALIALGSGGIKPC 243

Query:   139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF 198
             VS+FGGDQF VPEQ  Q+  FFSLFYFSINAGSLIST +TPI R D+ CF    C+PLAF
Sbjct:   244 VSAFGGDQFKVPEQVKQITSFFSLFYFSINAGSLISTTVTPILREDVSCFDDINCYPLAF 303

Query:   199 GVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLD 258
             GVPA+LM +++I+F++G+ +YK+  P GN+ + V      A+  K K KK+   +EHWLD
Sbjct:   304 GVPAVLMIVSVIIFVLGRSLYKMKPPAGNMVVLVSSTIWTALTTKCKEKKTN-PREHWLD 362

Query:   259 YANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
             YA+ KYD+  I+D+K               WALFDQQGSRWTFQA RMDG + G S +IK
Sbjct:   363 YADKKYDRQLIDDVKVLMRVLFLYLPLPVFWALFDQQGSRWTFQATRMDGDM-G-SWDIK 420

Query:   319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGXXXXXXXXXXXXXEFNI 378
             PDQ+Q++NPLLIL FIPL+   +YP +   G+ RPL+KLT+GG             E ++
Sbjct:   421 PDQLQVLNPLLILIFIPLYDVALYPALKLVGIRRPLQKLTMGGILAGIAFIISGVVELSL 480

Query:   379 RAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPIN--GTQHFA- 435
                    P  ++  LRI+N+ +CD+ F S +     +    + A  N  I   G+     
Sbjct:   481 EKTYPDLPYSQNIQLRIFNADNCDYFFTSNIPGAENVTVTSLNAYTNKDIYAPGSLDVEF 540

Query:   436 ALFEPSTSC-------PYVL-NKTFQSSVLGA-DGKITEYYLIRDEKQQAHLKRLGEFHD 486
             +L   S +C       P VL + T  S  L   +G  + YY   D      + +  + H 
Sbjct:   541 SLSSASEACTISADKIPKVLTDNTAWSLFLNPLNG--SGYYWEED-----FVDKPSQSHP 593

Query:   487 L-RNI-NSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIP---AGVY 541
             L RN+ N   ++ I +     G+ +    DD       L T     EY+  +     G +
Sbjct:   594 LIRNVANVPQELSIRWEKASTGEVVY---DD--LASKTLLTRVNSAEYVVMVGERNVGTF 648

Query:   542 EVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIIT 601
             +V +    + + +   ++N+Y  NL    SP             N V +LWL PQY+++T
Sbjct:   649 DVHTGG--VYTLLIKDNNNIYEANLEEVTSP-------------NSVKILWLVPQYVVMT 693

Query:   602 AAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLF 661
               E+MFS+TG EF++ QAP SMKS + ACWLLT AFGN+IV ++AEA +FE+QA EF LF
Sbjct:   694 LGEVMFSVTGLEFSYAQAPPSMKSVLQACWLLTVAFGNVIVVVIAEAALFESQASEFFLF 753

Query:   662 ASLMVVDMGVFALLAMRYKYVEEDEDEDHE 691
             A LM  DM +F ++A  Y YV  D ++  E
Sbjct:   754 AGLMFADMLIFMVMA--YYYVPNDPNKVEE 781

GO:0005427 "proton-dependent oligopeptide secondary active transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=IEA

ZFIN|ZDB-GENE-030131-5866 slc15a2 "solute carrier family 15 (H+/peptide transporter), member 2" [Danio rerio (taxid:7955)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 268/682 (39%), Positives = 391/682 (57%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++ FIV+NEFCERF YYGM+ VL+LY    L +D+  +T ++H ++GLCYF PL G 
Sbjct:    28 YPVSIAFIVVNEFCERFSYYGMKAVLTLYFMNYLHWDKNLSTAIYHAFSGLCYFTPLLGA 87

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL--NIPKRTFTLVGLLLIAVGTGGIK 136
             +IAD++LGKF TI+ LSIVY+ G+V+ +V AI  +  +      ++VGL LIA+GTGGIK
Sbjct:    88 LIADSWLGKFKTIIYLSIVYVIGHVVKSVGAIPDVGDSTVHIALSMVGLGLIALGTGGIK 147

Query:   137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
             PCV++FGGDQF   +   +  KFFS+FY SINAGS++ST ITPI R D+QCFG + C+ L
Sbjct:   148 PCVAAFGGDQFD-EDNIDERRKFFSIFYMSINAGSVLSTIITPILRGDVQCFGGD-CYAL 205

Query:   197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHW 256
             AFGVPA LM +A++VFI G  +YK + P+GNV + V +C   AI N++   K    + HW
Sbjct:   206 AFGVPAALMVIALVVFISGSGLYKKSPPEGNVLVRVCKCIGFAISNRWTNSKKSPKRSHW 265

Query:   257 LDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSLE 316
             LD+A +KY +  I++IK               WALFDQQGSRWT QA RM+   FG    
Sbjct:   266 LDWAEEKYSKRLIQEIKMVCRVLVLYIPLPMFWALFDQQGSRWTLQATRMN-MDFGGGFI 324

Query:   317 IKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXXXXXXXXXXXXXE 375
             IKPDQMQ++N LLIL FIP+F   IYPLV  C +   PL+K+  G              E
Sbjct:   325 IKPDQMQMLNALLILVFIPIFDMGIYPLVGLCRIKLTPLKKMATGMILAALAFCAATAVE 384

Query:   376 FNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKN---ERVLRAMDMLALNNIPINGTQ 432
               +       P  +   +++YN MD D     P  N   E +    +    +++P+ G  
Sbjct:   385 VYVIKTVVEPPPAKESLVQVYNLMDSDVTVQFPAHNVFSEPLKPYEEPSGYSSLPLTGES 444

Query:   433 HFAALFEPSTSCPYVLNKTFQS----SVL---GADGKITEYYLIRDEKQQAHLKRLGEFH 485
                 +        Y    TF      S+L    A    +   L++D   ++     G  +
Sbjct:   445 QLQNVVVSHNGVNYECRLTFTERMAYSLLLHPPAQSGGSVCNLVKDHITKSET---GAAY 501

Query:   486 DLRNINSSLK-MQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVR 544
              +R IN+  + + +  G+E     +   ++ G  ++I +P G    EY + +        
Sbjct:   502 -IRFINTHTENINVTVGTE----EVHASANYGISRNISVPRG----EYNKAVCV------ 546

Query:   545 SENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAE 604
             +++K  + N+ L D   +   + +E    +   + ++D  +N + + W  PQY+ +TA E
Sbjct:   547 TDSKEYEINLGLLDFGAFYTVILSETG-NNLAIKKMEDIQANNIHIGWQIPQYVFLTAGE 605

Query:   605 IMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASL 664
             +MFSITG EF+++QAP SMKS + A WL+T AFGN+IV IVAE    E Q  EFLLFA+L
Sbjct:   606 VMFSITGLEFSYSQAPASMKSVLQAGWLMTVAFGNVIVLIVAEGAGME-QWVEFLLFAAL 664

Query:   665 MVVDMGVFALLAMRYKYVEEDE 686
             +V    +F+++A  Y YV+ D+
Sbjct:   665 LVAVSIIFSIMAYFYTYVDPDQ 686

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042936 "dipeptide transporter activity" evidence=IDA

UNIPROTKB|Q16348 SLC15A2 "Solute carrier family 15 member 2" [Homo sapiens (taxid:9606)]

 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 263/676 (38%), Positives = 392/676 (57%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++ FIV+NEFCERF YYGM+ VL LY    L ++E T+T ++H ++ LCYF P+ G 
Sbjct:    42 YPLSIAFIVVNEFCERFSYYGMKAVLILYFLYFLHWNEDTSTSIYHAFSSLCYFTPILGA 101

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGIK 136
              IAD++LGKF TI+ LS+VY+ G+V+ ++ A+  L   +     +L+GL LIA+GTGGIK
Sbjct:   102 AIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGQVVHTVLSLIGLSLIALGTGGIK 161

Query:   137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
             PCV++FGGDQF   + + +  ++FS+FY SINAGSLISTFITP+ R D+QCFG++ C+ L
Sbjct:   162 PCVAAFGGDQF-EEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGED-CYAL 219

Query:   197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EH 255
             AFGVP LLM +A++VF +G  +Y    P+GN+  +VF+C   AI N+FK +  +  K +H
Sbjct:   220 AFGVPGLLMVIALVVFAMGSKIYNKPPPEGNIVAQVFKCIWFAISNRFKNRSGDIPKRQH 279

Query:   256 WLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSL 315
             WLD+A +KY +  I D+K               WAL DQQGSRWT QA RM+ R  G  +
Sbjct:   280 WLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQAIRMN-RNLGFFV 338

Query:   316 EIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXXXXXXXXXXXXX 374
              ++PDQMQ++NPLL+L FIPLF +VIY LV KCG+N   LRK+ VG              
Sbjct:   339 -LQPDQMQVLNPLLVLIFIPLFDFVIYRLVSKCGINFSSLRKMAVGMILACLAFAVAAAV 397

Query:   375 EFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIP-INGTQH 433
             E  I   +   P  +   L++ N  D D V  + + NE      + L + +I     T H
Sbjct:   398 EIKINEMAPAQPGPQEVFLQVLNLAD-DEVKVTVVGNEN-----NSLLIESIKSFQKTPH 451

Query:   434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRNI 490
             ++ L   + S  +  +  + +  L  +  + E   Y L+  E   +    + +  + R  
Sbjct:   452 YSKLHLKTKSQDFHFHLKYHNLSLYTEHSVQEKNWYSLVIREDGNSISSMMVKDTESRTT 511

Query:   491 NSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVL 550
             N    ++ +  +  +   I+L +D       D    A  T      PA     R+E+K  
Sbjct:   512 NGMTTVRFV-NTLHKDVNISLSTDTSLNVGEDYGVSAYRTVQRGEYPA--VHCRTEDKNF 568

Query:   551 KSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSIT 610
               N+ L D     L + T  + +   A  ++D  +NK+S+ W  PQY ++TA E+MFS+T
Sbjct:   569 SLNLGLLDFGAAYLFVITNNTNQGLQAWKIEDIPANKMSIAWQLPQYALVTAGEVMFSVT 628

Query:   611 GFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMG 670
             G EF+++QAP SMKS + A WLLT A GN+IV +VA+       A EF+LF+ L++V   
Sbjct:   629 GLEFSYSQAPSSMKSVLQAAWLLTIAVGNIIVLVVAQFSGLVQWA-EFILFSCLLLVICL 687

Query:   671 VFALLAMRYKYVEEDE 686
             +F+++   Y  V+ ++
Sbjct:   688 IFSIMGYYYVPVKTED 703

GO:0015031 "protein transport" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IEA

GO:0042895 "antibiotic transporter activity" evidence=IEA

GO:0042936 "dipeptide transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015893 "drug transport" evidence=NAS

GO:0006810 "transport" evidence=TAS

GO:0015333 "peptide:hydrogen symporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1P0K5 SLC15A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 895 (320.1 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
 Identities = 192/414 (46%), Positives = 255/414 (61%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++FFIVINEFCERF YYGMR VL LY    L +D+  +T ++H +  LCY  P+ G 
Sbjct:    18 YPLSIFFIVINEFCERFSYYGMRAVLVLYFKYFLRWDDNFSTAIYHTFVALCYLTPILGA 77

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAID----------PLNIPKR-TFTLVGLLL 127
             +IAD++LGKF TIV LSIVY  G  ++ V++I+          P NI      ++ GL+L
Sbjct:    78 LIADSWLGKFKTIVSLSIVYTIGQAVMAVSSINDMTDQNRDGNPDNIAVHIALSMTGLIL 137

Query:   128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
             IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY SINAGSLIST ITPI R   +C
Sbjct:   138 IALGTGGIKPCVSAFGGDQF-EEHQEKQRSRFFSIFYLSINAGSLISTIITPILRAQ-EC 195

Query:   188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
                 ++ C+PLAFGVPA LM ++++VFI G  MYK  +P+GN+ + V +C   AIKN+F+
Sbjct:   196 GIHSRQQCYPLAFGVPAALMAVSLVVFIAGSGMYKKVQPQGNIMVRVCKCIGFAIKNRFR 255

Query:   246 TKKSERTK-EHWLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQAN 304
              +  E  K EHWLD+A++KYD+  I   K               WALFDQQGSRWT QA 
Sbjct:   256 HRSKEYPKREHWLDWASEKYDKRLIAQTKMVLKVLFLYIPLPMFWALFDQQGSRWTLQAT 315

Query:   305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXX 363
              MDG  FG +++I+PDQMQ +NP+LI+  +P+   VIYPL+ KC +N  PLR++TVG   
Sbjct:   316 TMDGD-FG-AMQIQPDQMQTVNPILIIIMVPVVDAVIYPLIQKCKINFTPLRRITVGMFL 373

Query:   364 XXXXXXXXXXXEFNIRAHSQIAPQDRHFSLRIYNSMD--CDFVFHSPLKNERVL 415
                        +  I     + P      ++I N  D   +  F   L+N  VL
Sbjct:   374 AGLAFVAAALLQVQIDKTLPVFPAAGQAQIKIINLGDSNANVTFLPNLQNVTVL 427

GO:0005427 "proton-dependent oligopeptide secondary active transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MPK7 SLC15A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 264/674 (39%), Positives = 389/674 (57%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++ FIV+NEFCERF YYGM+ VL+LY    L + E T+T ++H ++ LCYF P+ G 
Sbjct:    49 YPLSIVFIVVNEFCERFSYYGMKAVLTLYFLYFLHWSENTSTSVYHAFSSLCYFTPILGA 108

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGIK 136
              IAD++LGKF TI+ LS+VY+ G+V+ ++ A+  L   +     ++VGL LIA+GTGGIK
Sbjct:   109 AIADSWLGKFKTIIYLSLVYVLGHVIKSMGALPILGGQMLHTVLSMVGLSLIALGTGGIK 168

Query:   137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR-HDMQCFGQEACFP 195
             PCV++FGGDQF   + + +  ++FS+FY SINAGSLISTF+TP+ R  D+QCFG++ C+ 
Sbjct:   169 PCVAAFGGDQF-EEKHAEERTRYFSVFYLSINAGSLISTFVTPMLRVGDVQCFGKD-CYA 226

Query:   196 LAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-E 254
             LAFGVP LLM +A++VF +G  +Y+   P+GN+  +V +C   AI ++FK    +  K E
Sbjct:   227 LAFGVPGLLMLIALVVFAMGSKLYRKPPPEGNILNQVVKCIWFAISSRFKNHSGDNPKRE 286

Query:   255 HWLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTS 314
             HWLD+A +KY +  I D+K               WAL DQQGSRWT QA RM+G + G  
Sbjct:   287 HWLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQATRMNGNL-GFF 345

Query:   315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXXXXXXXXXXXX 373
             + ++PDQMQ++NP L+L FIPLF  VIY LV KCG+N   LRK+ VG             
Sbjct:   346 V-LQPDQMQVLNPFLVLIFIPLFDLVIYRLVSKCGINFTSLRKMAVGMILACLAFAVAAA 404

Query:   374 XEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER-VLRAMDMLALNNIPINGTQ 432
              E  I   +   P  +   L++ N  D D V  + L +E   L A  + +  N+P     
Sbjct:   405 VEIKINEMAPHQPDSQEIFLQVLNLAD-DEVKVTVLGDENNTLLAESIKSFQNMP----- 458

Query:   433 HFAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRN 489
             H++ L   + S  +     + +  +  D  + E   Y LI  E  ++    + +  + + 
Sbjct:   459 HYSKLHLKTKSQNFHFQLKYHNVSVYTDHSVEEKIWYTLIIREDGESISSMMVKDEENKT 518

Query:   490 INSSLKMQILYGSELQGK-RITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENK 548
              N    M+ +  + L  K  ++L +D     D D    A  T      PA     R++ +
Sbjct:   519 TNGMTAMRFV--NTLHEKVNVSLGTDASLIVDEDYGVSAYRTVQRGEYPA--VHCRTKKE 574

Query:   549 VLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFS 608
                 N+ L D     L + T  + +   A  ++   +NK+S+ W  PQY ++TA E+MFS
Sbjct:   575 DFSLNLGLLDFGAVYLFVITNRTNQGPQAWKMEYMPANKMSIAWQLPQYALVTAGEVMFS 634

Query:   609 ITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVD 668
             +TG EF+++QAP SMKS + A WLLT A GN+IV IVA+       A EF+LF+ L++V 
Sbjct:   635 VTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLIVAQFSGLAQWA-EFILFSCLLLVV 693

Query:   669 MGVFALLAMRYKYV 682
               +F++  M Y YV
Sbjct:   694 CLIFSI--MGYYYV 705

GO:0016021 "integral to membrane" evidence=IEA

GO:0015198 "oligopeptide transporter activity" evidence=IEA

RGD|61972 Slc15a2 "solute carrier family 15 (H+/peptide transporter), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 268/701 (38%), Positives = 399/701 (56%)

Query:     1 MASAPVSSYMLSPSE--QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKT 58
             M   P S    SP +     YP ++ FIV+NEFCERF YYGM+ VL+LY    L ++E T
Sbjct:    22 MLPRPPSPPKKSPPKIFGSSYPVSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDT 81

Query:    59 ATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IP 116
             +T ++H ++ LCYF P+ G  IAD++LGKF TI+ LS+VY+ G+V  ++ AI  L   + 
Sbjct:    82 STSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPILGGKML 141

Query:   117 KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLE-KFFSLFYFSINAGSLIST 175
                 +LVGL LIA+GTGGIKPCV++FGGDQF   E+ A+   ++FS+FY +INAGSLIST
Sbjct:   142 HTILSLVGLSLIALGTGGIKPCVAAFGGDQF--EEEHAEARTRYFSVFYLAINAGSLIST 199

Query:   176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQC 235
             FITP+ R D++CFGQ+ C+ LAFGVP LLM LA++VF +G  MY+   P+GN+  +V +C
Sbjct:   200 FITPMLRGDVKCFGQD-CYALAFGVPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVIKC 258

Query:   236 TIRAIKNKFKTKKSERTK-EHWLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQ 294
                A+ N+F+ +  +  K +HWLD+A +KY +  I D+K               WAL DQ
Sbjct:   259 IWFALCNRFRNRSGDLPKRQHWLDWAAEKYPKHLIADVKALTRVLFLYIPLPMFWALLDQ 318

Query:   295 QGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RP 353
             QGSRWT QAN+M+G + G  + ++PDQMQ++NP L+L FIPLF  VIY L+ KC +N   
Sbjct:   319 QGSRWTLQANKMNGDL-GFFV-LQPDQMQVLNPFLVLIFIPLFDLVIYRLISKCRINFSS 376

Query:   354 LRKLTVGGXXXXXXXXXXXXXEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER 413
             LRK+ VG              E  I       P  +   L++ N  D D V  + L +  
Sbjct:   377 LRKMAVGMILACLAFAVAALVETKINGMIHPQPASQEIFLQVLNLADGD-VKVTVLGS-- 433

Query:   414 VLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIR 470
               R   +L  +      T H++ L   + S     +  + S  +  D  + E   Y L+ 
Sbjct:   434 --RNNSLLVESVSSFQNTTHYSKLHLEAKSQDLHFHLKYNSLSVHNDHSVEEKNCYQLLI 491

Query:   471 DEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYT 530
              +  ++    L +   ++  N    ++ +  +  +   I+L++D       D    A Y 
Sbjct:   492 HQDGESISSMLVKDTGIKPANGMAAIRFI-NTLHKDLNISLDTDAPLSVGKDYGVSA-YR 549

Query:   531 EYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSM 590
               + G    V+   +E+KV   ++   D     L + T  + +   A   +D   NK+S+
Sbjct:   550 TVLRGKYPAVH-CETEDKVFSLDLGQLDFGTTYLFVITNITSQGLQAWKAEDIPVNKLSI 608

Query:   591 LWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKI 650
              W  PQY+++TAAE+MFS+TG EF+++QAP SMKS + A WLLT A GN+IV +VA+   
Sbjct:   609 AWQLPQYVLVTAAEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLVVAQFSG 668

Query:   651 FENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE 691
                 A EF+LF+ L++V   +F+++A  Y YV    ++  E
Sbjct:   669 LAQWA-EFVLFSCLLLVVCLIFSVMA--YYYVPLKSEDTRE 706

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO

GO:0006857 "oligopeptide transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IEA;ISO

GO:0016020 "membrane" evidence=ISO

GO:0042891 "antibiotic transport" evidence=IMP

GO:0042895 "antibiotic transporter activity" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

UNIPROTKB|G3V6A7 Slc15a2 "Solute carrier family 15 member 2" [Rattus norvegicus (taxid:10116)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 268/701 (38%), Positives = 399/701 (56%)

Query:     1 MASAPVSSYMLSPSE--QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKT 58
             M   P S    SP +     YP ++ FIV+NEFCERF YYGM+ VL+LY    L ++E T
Sbjct:    33 MLPRPPSPPKKSPPKIFGSSYPVSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWNEDT 92

Query:    59 ATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IP 116
             +T ++H ++ LCYF P+ G  IAD++LGKF TI+ LS+VY+ G+V  ++ AI  L   + 
Sbjct:    93 STSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKSLGAIPILGGKML 152

Query:   117 KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLE-KFFSLFYFSINAGSLIST 175
                 +LVGL LIA+GTGGIKPCV++FGGDQF   E+ A+   ++FS+FY +INAGSLIST
Sbjct:   153 HTILSLVGLSLIALGTGGIKPCVAAFGGDQF--EEEHAEARTRYFSVFYLAINAGSLIST 210

Query:   176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQC 235
             FITP+ R D++CFGQ+ C+ LAFGVP LLM LA++VF +G  MY+   P+GN+  +V +C
Sbjct:   211 FITPMLRGDVKCFGQD-CYALAFGVPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVIKC 269

Query:   236 TIRAIKNKFKTKKSERTK-EHWLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQ 294
                A+ N+F+ +  +  K +HWLD+A +KY +  I D+K               WAL DQ
Sbjct:   270 IWFALCNRFRNRSGDLPKRQHWLDWAAEKYPKHLIADVKALTRVLFLYIPLPMFWALLDQ 329

Query:   295 QGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RP 353
             QGSRWT QAN+M+G + G  + ++PDQMQ++NP L+L FIPLF  VIY L+ KC +N   
Sbjct:   330 QGSRWTLQANKMNGDL-GFFV-LQPDQMQVLNPFLVLIFIPLFDLVIYRLISKCRINFSS 387

Query:   354 LRKLTVGGXXXXXXXXXXXXXEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER 413
             LRK+ VG              E  I       P  +   L++ N  D D V  + L +  
Sbjct:   388 LRKMAVGMILACLAFAVAALVETKINGMIHPQPASQEIFLQVLNLADGD-VKVTVLGS-- 444

Query:   414 VLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIR 470
               R   +L  +      T H++ L   + S     +  + S  +  D  + E   Y L+ 
Sbjct:   445 --RNNSLLVESVSSFQNTTHYSKLHLEAKSQDLHFHLKYNSLSVHNDHSVEEKNCYQLLI 502

Query:   471 DEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYT 530
              +  ++    L +   ++  N    ++ +  +  +   I+L++D       D    A Y 
Sbjct:   503 HQDGESISSMLVKDTGIKPANGMAAIRFI-NTLHKDLNISLDTDAPLSVGKDYGVSA-YR 560

Query:   531 EYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSM 590
               + G    V+   +E+KV   ++   D     L + T  + +   A   +D   NK+S+
Sbjct:   561 TVLRGKYPAVH-CETEDKVFSLDLGQLDFGTTYLFVITNITSQGLQAWKAEDIPVNKLSI 619

Query:   591 LWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKI 650
              W  PQY+++TAAE+MFS+TG EF+++QAP SMKS + A WLLT A GN+IV +VA+   
Sbjct:   620 AWQLPQYVLVTAAEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLVVAQFSG 679

Query:   651 FENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDEDHE 691
                 A EF+LF+ L++V   +F+++A  Y YV    ++  E
Sbjct:   680 LAQWA-EFVLFSCLLLVVCLIFSVMA--YYYVPLKSEDTRE 717

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IEA

UNIPROTKB|P46059 SLC15A1 "Solute carrier family 15 member 1" [Homo sapiens (taxid:9606)]

 Score = 882 (315.5 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
 Identities = 181/394 (45%), Positives = 250/394 (63%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++FFIV+NEFCERF YYGMR +L LY    + +D+  +T ++H +  LCY  P+ G 
Sbjct:    12 YPLSIFFIVVNEFCERFSYYGMRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGA 71

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL----------NIPKRT-FTLVGLLL 127
             +IAD++LGKF TIV LSIVY  G  + +V++I+ L          ++P     +L+GL L
Sbjct:    72 LIADSWLGKFKTIVSLSIVYTIGQAVTSVSSINDLTDHNHDGTPDSLPVHVVLSLIGLAL 131

Query:   128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC 187
             IA+GTGGIKPCVS+FGGDQF    Q  Q  +FFS+FY +INAGSL+ST ITP+ R   QC
Sbjct:   132 IALGTGGIKPCVSAFGGDQF-EEGQEKQRNRFFSIFYLAINAGSLLSTIITPMLRVQ-QC 189

Query:   188 --FGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFK 245
                 ++AC+PLAFGVPA LM +A+IVF++G  MYK  KP+GN+  +V +C   AIKN+F+
Sbjct:   190 GIHSKQACYPLAFGVPAALMAVALIVFVLGSGMYKKFKPQGNIMGKVAKCIGFAIKNRFR 249

Query:   246 TK-KSERTKEHWLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQAN 304
              + K+   +EHWLD+A +KYD+  I  IK               WALFDQQGSRWT QA 
Sbjct:   250 HRSKAFPKREHWLDWAKEKYDERLISQIKMVTRVMFLYIPLPMFWALFDQQGSRWTLQAT 309

Query:   305 RMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXX 363
              M G++ G +LEI+PDQMQ +N +LI+  +P+F  V+YPL+ KCG N   L+K+ VG   
Sbjct:   310 TMSGKI-G-ALEIQPDQMQTVNAILIVIMVPIFDAVLYPLIAKCGFNFTSLKKMAVGMVL 367

Query:   364 XXXXXXXXXXXEFNIRAHSQIAPQDRHFSLRIYN 397
                        +  I     + P+     +++ N
Sbjct:   368 ASMAFVVAAIVQVEIDKTLPVFPKGNEVQIKVLN 401

GO:0015031 "protein transport" evidence=IEA

GO:0005427 "proton-dependent oligopeptide secondary active transmembrane transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0007586 "digestion" evidence=TAS

GO:0015333 "peptide:hydrogen symporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2QWX1 SLC15A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
 Identities = 263/677 (38%), Positives = 391/677 (57%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++ FIV+NEFCERF YYGM+ VL+LY    L + E T+T ++H ++ LCYF P+ G 
Sbjct:    53 YPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWSEDTSTSIYHAFSSLCYFTPILGA 112

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN--IPKRTFTLVGLLLIAVGTGGIK 136
              IAD++LGKF TI+ LS+VY+ G+V+ ++ A+  +         +LVGL LIA+GTGGIK
Sbjct:   113 AIADSWLGKFKTIIYLSLVYVLGHVVKSLGALPIIGGQTVHTVLSLVGLSLIALGTGGIK 172

Query:   137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
             PCV++FGGDQF   + + +  ++FS+FY SINAGSLISTFITP+ R D+QCFG++ C+ L
Sbjct:   173 PCVAAFGGDQF-EEKHAEERTRYFSVFYLSINAGSLISTFITPMLRGDVQCFGED-CYAL 230

Query:   197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EH 255
             AFGVP LLM +A++VF +G  +Y+   P+GN+  +V +C   AI N+F  +  +  K +H
Sbjct:   231 AFGVPGLLMVIALVVFTMGSKIYRKPPPEGNIVTQVVKCIWFAISNRFNNRSGDIPKRQH 290

Query:   256 WLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSL 315
             WLD+A +KY +  I D+K               WAL DQQGSRWT QA RM+G + G  +
Sbjct:   291 WLDWAAEKYPKQLIMDVKALTRVLFLYIPLPMFWALLDQQGSRWTLQATRMNGNL-GFFV 349

Query:   316 EIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXXXXXXXXXXXXX 374
              ++PDQMQ++NPLL+L FIPLF  VIY LV KCG++   LRK+ VG              
Sbjct:   350 -LQPDQMQVLNPLLVLIFIPLFDLVIYRLVSKCGISFSSLRKMAVGMILASLAFAVAAAV 408

Query:   375 EFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNER-VLRAMDMLALNNIPINGTQH 433
             E  I   +   P  +   L+  N  D + V  + L +E  +L    + +   +P     H
Sbjct:   409 EIKINKMTPPQPGPKEIFLQALNLAD-EEVKVTVLGDENNILLEESIRSFQKMP-----H 462

Query:   434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE--YY--LIRDEKQQAHLKRLGEFHDLRN 489
             +A L   + S  +     + +  +     + E  +Y  +IR++ +  +   +    D  N
Sbjct:   463 YAQLHLKTRSQDFHFYLKYHNMSVYTKHSVEEKNWYSLIIREDGKNIYSMMV---KDEEN 519

Query:   490 INSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACY-TEYIEGIPAGVYEV---RS 545
               +S    + + + L  K I +        D+ L  G  Y       + +G Y V   R+
Sbjct:   520 KTTSGMTALRFVNTLH-KEINISLGT----DVSLSVGEDYGVSAYTTVQSGEYPVVHCRT 574

Query:   546 ENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI 605
             E+K    NM L +     L +   ++ +   A  ++D  +NK+S+ W  PQY ++TA E+
Sbjct:   575 EDKDFSLNMGLLESGAAYLFVIINSTNQDPQAWKMEDIPANKLSIAWQLPQYALVTAGEV 634

Query:   606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLM 665
             MFS+TG EF+++QAP SMKS + A WLLT A GN+IV +VA+       A EF+LF+ L+
Sbjct:   635 MFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLVVAQFSGLVQWA-EFILFSCLL 693

Query:   666 VVDMGVFALLAMRYKYV 682
             +V   VF++  M Y YV
Sbjct:   694 LVVCLVFSI--MGYYYV 708

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|A5A4L7 slc15A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 260/678 (38%), Positives = 393/678 (57%)

Query:    19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG 78
             YP ++ FIV+NEFCERF YYGM+ VL+LY    L + E T+T ++H ++ LCYF P+ G 
Sbjct:    42 YPLSIAFIVVNEFCERFSYYGMKAVLTLYFLYFLHWSEDTSTSVYHAFSSLCYFTPILGA 101

Query:    79 IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL--NIPKRTFTLVGLLLIAVGTGGIK 136
              IAD++LGKF TI+ LS+VY+ G+V+ ++ A+  L  ++     ++VGL LIA+GTGGIK
Sbjct:   102 AIADSWLGKFKTIIYLSLVYVLGHVIKSLGALPILGGHMIHTILSMVGLSLIALGTGGIK 161

Query:   137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
             PCV++FGGDQF   + + +  ++FS+FY SINAGSLISTF+TP+ R D+QCFG++ C+ L
Sbjct:   162 PCVAAFGGDQF-EEKHAEERTRYFSVFYLSINAGSLISTFVTPMLRGDVQCFGKD-CYAL 219

Query:   197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EH 255
             AFGVP +LM +A++VF +G  +YK   P+GN+  +V +C   AI N+FK +  +  K EH
Sbjct:   220 AFGVPGMLMIIALVVFSMGSKIYKKPPPEGNIVTQVVRCIWFAISNRFKNRSGDIPKREH 279

Query:   256 WLDYANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSL 315
             WLD+A++KY +  I D+K               WAL DQQGSRWT QA RM+G + G  +
Sbjct:   280 WLDWASEKYSKQLIMDVKALTRILFLYIPLPMFWALLDQQGSRWTLQATRMNGNL-GFFV 338

Query:   316 EIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGXXXXXXXXXXXXX 374
              ++PDQMQ++NP L+L FIPLF  V+Y LV KCG+N   LRK+ VG              
Sbjct:   339 -LQPDQMQVLNPFLVLIFIPLFDLVVYRLVAKCGINFTSLRKMAVGMILACLAFAVAAAV 397

Query:   375 EFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERV-LRAMDMLALNNIPINGTQH 433
             E  I   +   P  +   L++ N  + D V  + L NE   L    + +   +P     H
Sbjct:   398 EIKINGMAPPQPDSQEGFLQVLNLAN-DEVKVTVLGNENSSLLEESIKSFQTMP-----H 451

Query:   434 FAALFEPSTSCPYVLNKTFQSSVLGADGKITE---YYLIRDEKQQAHLKRLGEFHDLRNI 490
             ++ L   +    +     + +  +  +  + E   Y LI  E  ++    + +  + R  
Sbjct:   452 YSKLHLKTKREDFHFQLKYHNLSVYTEHSVEEKKLYTLIIREDGKSISSMMVKDAESRAT 511

Query:   491 NSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVL 550
             N    M+ +  +  +   I+L +D  F    D    A  T      P  V   R++++  
Sbjct:   512 NGMTAMRFV-NTLHEEVNISLGTDTSFSVGKDYGVSAYRTVQRGEYP--VVHCRTKDENF 568

Query:   551 KSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSIT 610
               N+ L D     L + T ++ +    + ++   +NK+S+ W  PQY ++TA E+MFS+T
Sbjct:   569 SLNLGLLDFGAAYLFVITNSTGQGPRVQKIEYTPANKMSIAWQLPQYALVTAGEVMFSVT 628

Query:   611 GFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMG 670
             G EF+++QAP SMKS + A WLLT A GN+IV IVA+       A EF+LF+ L++V   
Sbjct:   629 GLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLIVAQFSGLVQWA-EFILFSCLLLVVCL 687

Query:   671 VFALLAMRYKYVE-EDED 687
             +F++  M Y Y+  + ED
Sbjct:   688 IFSI--MGYYYIPIKPED 703

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O01840	PEPT3_CAEEL	No assigned EC number	0.3570	0.9319	0.9186	yes	N/A
Q8WMX5	S15A1_CANFA	No assigned EC number	0.3968	0.9348	0.9124	yes	N/A
Q9ES07	S15A2_MOUSE	No assigned EC number	0.4048	0.9348	0.8861	yes	N/A
P46029	S15A2_RABIT	No assigned EC number	0.4008	0.9493	0.8998	yes	N/A
Q63424	S15A2_RAT	No assigned EC number	0.4038	0.9536	0.9039	yes	N/A
P46059	S15A1_HUMAN	No assigned EC number	0.3909	0.9305	0.9081	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	691
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-177
pfam00854	372	pfam00854, PTR2, POT family	2e-80
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-72
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	4e-20
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	3e-19
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	4e-17
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	7e-14
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	3e-13
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-05

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  520 bits (1341), Expect = e-177
 Identities = 260/663 (39%), Positives = 365/663 (55%), Gaps = 40/663 (6%)

Query: 35  FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVIL 94
           F YYGM+T+L LY+   L ++E TAT ++H +T LCY  PL G +IAD++LGKF TI+ L
Sbjct: 1   FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60

Query: 95  SIVYLGGNVLLTVTAIDPLNIPKRT-FTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQS 153
           S+VY+ G+ L ++ A+  L  P     +LVGL LIA+GTGGIKPCVS+FGGDQF    Q 
Sbjct: 61  SLVYVVGHALASLGAVPSLGHPLHDALSLVGLALIALGTGGIKPCVSAFGGDQF-EERQL 119

Query: 154 AQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI 213
           +   +FFS FYF+INAGSL ST ITPI R D+ CFG + CFPLAFGVP +LM LA+IVF 
Sbjct: 120 SLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFS 179

Query: 214 IGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIK 273
           +G  MYK   P GN+  +V +C + A+K +F+T+  +  + HWLD+A  KY    I   K
Sbjct: 180 MGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLHWLDWAAPKYLIRMIRSTK 239

Query: 274 TLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTF 333
            LLR+L LF+PLP+FWALFDQQGSRWT QA RMDG V      I+PDQMQ +NPLL+L  
Sbjct: 240 RLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGL--FPIQPDQMQAVNPLLVLIL 297

Query: 334 IPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIR--AHSQIAPQDRH 390
           +P+F YV+YP + KCG     LRK+ VG LLAAL+F V+AL++  I      + +     
Sbjct: 298 VPIFDYVVYPALAKCGTRFTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASIIF 357

Query: 391 FSLRIYNSMDCDFVFHS----PLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPY 446
             +   +         S    P      L   +     N+    +   A     +     
Sbjct: 358 LQVLNTDCTITVVSGISKRVLPHDVYLHLDKKNTSGDQNLFTTKSS--AKACGDTGKLES 415

Query: 447 VLNKT----FQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHD--LRNINSSLKMQILY 500
            ++          VL       +   + D+   A      EF    +R +N+     ++ 
Sbjct: 416 TVDAHEVEKKIIYVLLGSQGYYQLTAVTDKPTDAK----TEFGMGIVRLVNTLNGGAMIS 471

Query: 501 GSEL----QGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMEL 556
            S                D +++    P+  C                          +L
Sbjct: 472 LSTSDFDSVHPCNPRSPYDFYFRGTKYPSHTCDRI-------------DNATSTDLLSQL 518

Query: 557 QDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAF 616
                Y+  +    + +    ++++D   N VS+LW  PQY++ TA E+MFS+TG EF++
Sbjct: 519 DFGIYYLTVITENPTIDGLQLQIVEDVPVNTVSILWQLPQYVLATAGEVMFSVTGLEFSY 578

Query: 617 TQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLA 676
           +QAP +MKS + A WLLT A GN+IV I+AE +    Q  EF+LF+SLM+V M +F++LA
Sbjct: 579 SQAPPNMKSVLQALWLLTVAIGNIIVLIIAEFENMAVQWAEFVLFSSLMLVVMAIFSILA 638

Query: 677 MRY 679
             Y
Sbjct: 639 YTY 641

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  260 bits (666), Expect = 2e-80
 Identities = 121/294 (41%), Positives = 163/294 (55%), Gaps = 15/294 (5%)

Query: 88  FLTIVILSIVYLGGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQ 146
           F TI++ SI+Y  G+VLLT+ AI P   P +     +GL LIA+GTGGIKP VS+FG DQ
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQ 60

Query: 147 FIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMF 206
           F    Q  + + FFS FYFSINAGSLI+T ITP  +       Q   +PL FG+PA+ M 
Sbjct: 61  F-DETQDPRRDGFFSWFYFSINAGSLIATIITPYLQ-------QNVGYPLGFGLPAVGML 112

Query: 207 LAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EHWLDYANDKYD 265
           LA++VF++G   YK   P G     V       I    K +K +  K  HWL +A +KY+
Sbjct: 113 LALLVFLLGSRRYKKKAPPGGSPFTVC--IAFIITAAGKNRKLQLPKDSHWLYWALEKYN 170

Query: 266 QGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLI 325
           + +I   K   R+ ++F+PLP FWALFDQQGS W  QA  +   ++     I PDQM   
Sbjct: 171 KRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAF--WILPDQMWTQ 228

Query: 326 NPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNI 378
              LI+  +P    +IYPL +    + +    L V  LL  L F+V  L+    
Sbjct: 229 LATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKR 282

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  242 bits (619), Expect = 3e-72
 Identities = 107/393 (27%), Positives = 179/393 (45%), Gaps = 39/393 (9%)

Query: 17  PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMH----LVLLYDEKTATVMFHIWTGLCYF 72
              P+ ++ I   E  ERF YYGMR +L LY++      L +DE  AT +F  +  L Y 
Sbjct: 17  FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYL 76

Query: 73  FPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGT 132
            P+ GG +AD  LG   TIV+ +I+   G+++L ++++            +GL LI VGT
Sbjct: 77  TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV-----SGPGGLYIGLALIIVGT 131

Query: 133 GGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEA 192
           G  KP +SS  G+ +  P+   + +  F+LFY  IN GSLI+  IT +            
Sbjct: 132 GLFKPNISSLLGELY--PKDDPRRDGGFTLFYMGINIGSLIAPIITGLL-------AINY 182

Query: 193 CFPLAFGVPALLMFLAIIVFIIGKPMYK----INKPKG-------NVALEVFQCTIRAI- 240
            + + FG+ A+ M + +++F++G+   K    +  P          V   +    + A+ 
Sbjct: 183 GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALL 242

Query: 241 -----KNKFKTKKSERTKEHWLDYANDKYDQ-GTIEDIKTLLRILLLFVPLPIFWALFDQ 294
                +N F       +    + Y  + +      ++ + LL  + LF+   IFWAL++Q
Sbjct: 243 TLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQ 302

Query: 295 QGSRWTFQANRM-DGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRP 353
            GS     A+R  + ++FG   E+ P   Q +NP  I+ F P+   +   L         
Sbjct: 303 MGSSLNLYADRNVNRQIFGF--EVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPST 360

Query: 354 LRKLTVGGLLAALSFVVSALVEFNIRAHSQIAP 386
             K  +G +LA L F++  L        S +  
Sbjct: 361 PIKFALGLILAGLGFLILLLAGIWFGGPSGLVS 393

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 90/383 (23%), Positives = 154/383 (40%), Gaps = 52/383 (13%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMH--LVLLYDEKTATVMFHIWTGLCYFFPLF 76
           +PK +F +   E  ERF YYGM+ +L++Y+     L + ++ A ++F  ++ L Y     
Sbjct: 8   HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSV 67

Query: 77  GGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIK 136
           G    D   G   T+V+  IV + G+ +L + +I P  I        GL  IAVG+G  K
Sbjct: 68  GWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM-SIYPDLI------FYGLGTIAVGSGLFK 120

Query: 137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL 196
              SS  G  +   +   + +  F+LFY SIN GS IS  +  +         +   + +
Sbjct: 121 ANPSSMVGKLYERGDM-PRRDGGFTLFYMSINIGSFISPLLAGV-------IAENYGYHV 172

Query: 197 AFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHW 256
            F + A+ M + ++ F  G+ M + +       L     T   +        +      W
Sbjct: 173 GFNLAAVGMVIGLLTFFAGRHMLR-DIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW 231

Query: 257 LDYANDKYDQGTIEDIKTLLRILLLF------------------VPLPIF------WALF 292
           L +         I  +   L +++ F                    + +F      W L+
Sbjct: 232 LMHHV---VIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLY 288

Query: 293 DQQGSRWTFQA-NRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCG-- 349
            Q  +   F A N M   + G S  +     Q +NP  ++   P+   +I+  + + G  
Sbjct: 289 AQMPTSLNFFADNNMHHEMLGMS--VPVIWFQSLNPFWVVVGSPVLA-MIWTRLGRKGKD 345

Query: 350 LNRPLRKLTVGGLLAALSFVVSA 372
              PL K T+G L    SF+  A
Sbjct: 346 PTTPL-KFTLGMLFCGASFLTFA 367

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 94/386 (24%), Positives = 159/386 (41%), Gaps = 70/386 (18%)

Query: 18  KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFG 77
           K PKA + I   E  ERF YYG++ ++++Y+   L   E  +  +F  ++ L Y     G
Sbjct: 18  KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIG 77

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKP 137
           G + D  LG    I++ +IV   G  L+  +  D           +G+  IAVG G  K 
Sbjct: 78  GWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDA------GIVYMGMATIAVGNGLFKA 131

Query: 138 CVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP------------------ 179
             SS         +   +L+  F+++Y SIN GS  S   TP                  
Sbjct: 132 NPSSLLST--CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189

Query: 180 ---------IFRHDMQCFGQEACF-PLAFGVPALLMFLAIIVFIIGKPMYKI-NKPKGNV 228
                      +  ++ +G +  F P+ +    LL+ +  +V +I    + + N+    +
Sbjct: 190 MLITVVNFAFCQRWVKQYGSKPDFEPINYR--KLLLTIVGVVALIAIATWLLHNQEIARM 247

Query: 229 ALEVFQCTIRAI--KNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLP 286
           AL V    I  I  K  F  K + R K                     ++   +L +   
Sbjct: 248 ALGVVALGIVVIFGKEAFAMKGAARRK---------------------MIVAFILMLEAI 286

Query: 287 IFWALFDQQGSRWTFQANR-MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLV 345
           IF+ L+ Q  +   F A R ++  + G ++E  P+Q Q +NP  I+   P+    IY   
Sbjct: 287 IFFVLYSQMPTSLNFFAIRNVEHSILGIAVE--PEQYQALNPFWIMIGSPILA-AIY--- 340

Query: 346 DKCGLNRPL-RKLTVGGLLAALSFVV 370
           +K G   P+  K  +G +L + +F+V
Sbjct: 341 NKMGDRLPMPHKFAIGMVLCSGAFLV 366

Length = 500

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 84.6 bits (209), Expect = 4e-17
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 18/206 (8%)

Query: 10  MLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGL 69
           M   + QP+   A++++V  +  E F +YGMR +L LY+   L YD+  A  +F  +  L
Sbjct: 1   MNKHASQPR---AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSL 57

Query: 70  CYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIA 129
            Y  P+ GG +AD  LG  + +++ +++   G+V+L  + I P      +F  + L +I 
Sbjct: 58  VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP------SFLYLSLAIIV 111

Query: 130 VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG 189
            G G  K  VS   G+ +  P    + +  FSL Y + N GS+I+    PI     Q   
Sbjct: 112 CGYGLFKSNVSCLLGELY-EPTDPRR-DGGFSLMYAAGNVGSIIA----PIACGYAQ--- 162

Query: 190 QEACFPLAFGVPALLMFLAIIVFIIG 215
           +E  + + FG+ A+ M   +++F+ G
Sbjct: 163 EEYSWAMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 73/389 (18%)

Query: 20  PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGI 79
           P+  F I   E  ERF YYG++ +L+++    L + ++ A + F  +  L Y     GG 
Sbjct: 13  PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGY 72

Query: 80  IADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCV 139
           + D  LG   TIV+ +IV   G  +  ++ + P          + L  IAVG G  K   
Sbjct: 73  VGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKP------DLIFIALGTIAVGNGLFKANP 126

Query: 140 SSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF------------------ 181
           +S     +  P +  +L+  F+LFY SIN GSLIS  + P+                   
Sbjct: 127 ASLLSKCY--PPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184

Query: 182 ---------RHDMQCFGQEACF-PLAFGVPALLMFLA---IIVFIIGKPMYKINKPKGNV 228
                    R  ++  G E    P++F    LL+ L    +++F+    M+  N    N+
Sbjct: 185 IALLVYFACRGMVKDIGSEPDHKPMSFS--KLLLVLLGSVVMIFVCAWLMH--NVEVANL 240

Query: 229 ALEVFQCTIRAI--KNKFKTKKSERTKEHWLDYANDKYDQGTIEDIKTLLRILLLFVPLP 286
            L V    +  I  +  FK  K+ R K                     +    +L +   
Sbjct: 241 VLIVLSIVVTIIFFREAFKLDKTGRNK---------------------MFVAFVLMLEAV 279

Query: 287 IFWALFDQQGSRWTFQA-NRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLV 345
           +F+ L+ Q  +   F A N +   + G S  I P   Q +NP  ++   P+    IY  +
Sbjct: 280 VFYILYAQMPTSLNFFAINNVHHEILGFS--INPVSFQALNPFWVVVASPILA-GIYTHL 336

Query: 346 DKCG--LNRPLRKLTVGGLLAALSFVVSA 372
              G  L+ P+ K T+G  L +L F+ +A
Sbjct: 337 GSKGKDLSMPM-KFTLGMFLCSLGFLTAA 364

Length = 489

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 72.3 bits (178), Expect = 3e-13
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 577 ARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTA 636
           A +     S  VS+ WL   Y++ +  E+  S  G       AP ++KS + A W LT A
Sbjct: 381 AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440

Query: 637 FGNLIVAIVA 646
            G  +   VA
Sbjct: 441 AGQTLGGQVA 450

Length = 498

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 27/195 (13%), Positives = 68/195 (34%), Gaps = 20/195 (10%)

Query: 23  VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD 82
           +  + +  F        +   L L    + L   +   ++   ++       L  G ++D
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVS-AFSLGYALGSLLAGYLSD 59

Query: 83  TYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSF 142
            + G+   +++  +++  G++LL                LVG  L+ +G G + P  ++ 
Sbjct: 60  RF-GRRRVLLLGLLLFALGSLLLAFA-------SSLWLLLVGRFLLGLGGGALYPAAAAL 111

Query: 143 GGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPA 202
             + F       +  +   LF      G+L+   +  +    +        +   F + A
Sbjct: 112 IAEWF----PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-------WRWLFLILA 160

Query: 203 LLMFLAIIVFIIGKP 217
           +L  L  ++ +    
Sbjct: 161 ILGLLLALLLLFLLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 19  YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFF-PLFG 77
             + +  + +  F   F YYG+ T L LY+  VL      A ++     GL      L G
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLL-SLFGLGGILGALLG 231

Query: 78  GIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKP 137
           G+++D    + L ++I  ++   G +LL +        P     LV LLL+  G G   P
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------PSLALLLVALLLLGFGLGFAFP 284

Query: 138 CVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLA 197
            + +   +    PE          LF    + G  +   +  +             +   
Sbjct: 285 ALLTLASELA-PPEARGTA---SGLFNTFGSLGGALGPLLAGLLLDTG-------GYGGV 333

Query: 198 FGVPALLMFLAIIVFII 214
           F + A L  LA ++ ++
Sbjct: 334 FLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
KOG1237|consensus	571		100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.95
KOG0569|consensus	485		99.89
PRK05122	399	major facilitator superfamily transporter; Provisi	99.88
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.87
KOG0254|consensus	513		99.87
PRK12382	392	putative transporter; Provisional	99.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.85
PRK03545	390	putative arabinose transporter; Provisional	99.85
PRK10489	417	enterobactin exporter EntS; Provisional	99.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.84
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.84
PRK10054	395	putative transporter; Provisional	99.84
PRK10504	471	putative transporter; Provisional	99.84
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.83
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.83
TIGR00900	365	2A0121 H+ Antiporter protein.	99.83
TIGR00893	399	2A0114 d-galactonate transporter.	99.83
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.83
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.82
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.82
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
PRK03633	381	putative MFS family transporter protein; Provision	99.8
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.8
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.8
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.79
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.79
PRK11663	434	regulatory protein UhpC; Provisional	99.79
TIGR00891	405	2A0112 putative sialic acid transporter.	99.79
PRK12307	426	putative sialic acid transporter; Provisional	99.79
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.78
KOG2532|consensus	466		99.78
PRK03699	394	putative transporter; Provisional	99.78
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.78
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.78
TIGR00898	505	2A0119 cation transport protein.	99.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.78
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.77
PRK10091	382	MFS transport protein AraJ; Provisional	99.77
TIGR00895	398	2A0115 benzoate transport.	99.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.77
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.77
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.77
PRK09528	420	lacY galactoside permease; Reviewed	99.77
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.77
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.76
PRK10642	490	proline/glycine betaine transporter; Provisional	99.76
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.76
PRK15011	393	sugar efflux transporter B; Provisional	99.76
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.76
PLN00028	476	nitrate transmembrane transporter; Provisional	99.76
PRK09705	393	cynX putative cyanate transporter; Provisional	99.75
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.75
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.74
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.74
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.73
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.73
PRK03893	496	putative sialic acid transporter; Provisional	99.73
PRK11043	401	putative transporter; Provisional	99.72
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.72
PRK15075	434	citrate-proton symporter; Provisional	99.71
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.71
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.71
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.71
PRK09952	438	shikimate transporter; Provisional	99.71
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.71
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.7
PRK10133	438	L-fucose transporter; Provisional	99.69
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.66
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.65
PRK11010	491	ampG muropeptide transporter; Validated	99.64
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.63
KOG1330|consensus	493		99.62
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.61
TIGR00901	356	2A0125 AmpG-related permease.	99.61
TIGR00805	633	oat sodium-independent organic anion transporter.	99.6
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.59
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.58
PRK11902	402	ampG muropeptide transporter; Reviewed	99.58
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.52
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.51
KOG0255|consensus	521		99.5
PRK09848	448	glucuronide transporter; Provisional	99.48
KOG0252|consensus	538		99.47
PRK09669	444	putative symporter YagG; Provisional	99.45
PRK10429	473	melibiose:sodium symporter; Provisional	99.45
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.42
PF13347	428	MFS_2: MFS/sugar transport protein	99.42
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.35
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.35
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.34
PRK15011	393	sugar efflux transporter B; Provisional	99.34
KOG2533|consensus	495		99.33
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.3
KOG3764|consensus	464		99.3
PRK05122	399	major facilitator superfamily transporter; Provisi	99.29
PRK09705	393	cynX putative cyanate transporter; Provisional	99.29
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.28
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.26
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.26
KOG2615|consensus	451		99.26
PRK03699	394	putative transporter; Provisional	99.24
KOG2504|consensus	509		99.24
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.23
PRK09952	438	shikimate transporter; Provisional	99.23
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.23
PTZ00207	591	hypothetical protein; Provisional	99.22
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.22
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.19
KOG0253|consensus	528		99.18
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.18
PRK12382	392	putative transporter; Provisional	99.17
PRK09874	408	drug efflux system protein MdtG; Provisional	99.17
PRK03633	381	putative MFS family transporter protein; Provision	99.17
PRK10489	417	enterobactin exporter EntS; Provisional	99.15
TIGR00893	399	2A0114 d-galactonate transporter.	99.14
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.14
PRK11663	434	regulatory protein UhpC; Provisional	99.14
PRK03545	390	putative arabinose transporter; Provisional	99.13
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.12
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.12
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.12
PRK11462	460	putative transporter; Provisional	99.1
PRK03893	496	putative sialic acid transporter; Provisional	99.09
TIGR00891	405	2A0112 putative sialic acid transporter.	99.09
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.09
PRK09528	420	lacY galactoside permease; Reviewed	99.09
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.08
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.05
PRK15075	434	citrate-proton symporter; Provisional	99.05
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.04
COG2211	467	MelB Na+/melibiose symporter and related transport	99.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.01
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.01
PRK11010	491	ampG muropeptide transporter; Validated	99.0
TIGR00900	365	2A0121 H+ Antiporter protein.	98.97
PRK10504	471	putative transporter; Provisional	98.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.94
PRK10091	382	MFS transport protein AraJ; Provisional	98.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.94
TIGR00895	398	2A0115 benzoate transport.	98.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.93
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.92
KOG2563|consensus	480		98.92
PLN00028	476	nitrate transmembrane transporter; Provisional	98.92
PRK12307	426	putative sialic acid transporter; Provisional	98.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.89
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.89
KOG4686|consensus	459		98.89
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.88
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.86
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.85
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.84
PRK10133	438	L-fucose transporter; Provisional	98.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.83
KOG2325|consensus	488		98.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.82
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.82
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.82
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.81
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.78
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.73
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.72
TIGR00901	356	2A0125 AmpG-related permease.	98.71
PRK09848	448	glucuronide transporter; Provisional	98.71
KOG3626|consensus	735		98.71
PRK11902	402	ampG muropeptide transporter; Reviewed	98.7
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.7
PF13347	428	MFS_2: MFS/sugar transport protein	98.69
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.68
PRK10054	395	putative transporter; Provisional	98.66
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.65
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.64
TIGR00898	505	2A0119 cation transport protein.	98.62
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.62
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.61
PRK11043	401	putative transporter; Provisional	98.6
KOG2504|consensus	509		98.59
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.57
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.57
KOG4686|consensus	459		98.54
PRK10429	473	melibiose:sodium symporter; Provisional	98.5
PRK09669	444	putative symporter YagG; Provisional	98.45
KOG2816|consensus	463		98.44
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.4
KOG2532|consensus	466		98.39
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.35
KOG0253|consensus	528		98.26
KOG3098|consensus	461		98.26
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.25
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.23
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.23
COG2211	467	MelB Na+/melibiose symporter and related transport	98.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.2
PRK11462	460	putative transporter; Provisional	98.18
KOG0569|consensus	485		98.17
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.17
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.14
COG0477	338	ProP Permeases of the major facilitator superfamil	98.09
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.08
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.07
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.96
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.95
PF12832	77	MFS_1_like: MFS_1 like family	97.92
KOG3762|consensus	618		97.91
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.7
KOG3764|consensus	464		97.64
KOG2533|consensus	495		97.59
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.58
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.46
KOG3762|consensus	618		97.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.39
KOG4332|consensus	454		97.25
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.18
PTZ00207	591	hypothetical protein; Provisional	97.16
KOG0637|consensus	498		97.15
KOG0254|consensus	513		96.96
KOG2615|consensus	451		96.96
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.75
TIGR00805	633	oat sodium-independent organic anion transporter.	96.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.44
PRK03612	521	spermidine synthase; Provisional	96.37
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.09
KOG0255|consensus	521		96.06
KOG2816|consensus	463		95.97
KOG2563|consensus	480		95.89
KOG0252|consensus	538		95.86
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.38
KOG1330|consensus	493		94.36
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.15
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.42
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.2
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.1
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.01
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.91
KOG3098|consensus	461		91.38
KOG4332|consensus	454		90.14
KOG3626|consensus	735		89.11
COG3202	509	ATP/ADP translocase [Energy production and convers	87.1
KOG3574|consensus	510		85.99
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	85.92
KOG3097|consensus	390		83.13
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	82.46

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=2.1e-62  Score=565.11  Aligned_cols=623  Identities=45%  Similarity=0.740  Sum_probs=504.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy195           35 FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLN  114 (691)
Q Consensus        35 ~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~  114 (691)
                      ++|||+...+..|+++.+|++.+.+..+...+...+++.++++|+++|+++||++++.++.+++.+|.+++++++.+...
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999998876543221


Q ss_pred             Cchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Q psy195          115 IPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEAC  193 (691)
Q Consensus       115 ~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~  193 (691)
                      .... ...++++.+.++|.|+++|++.++++||++ +.++++|.++++|+|+++|+|+++++.+.+++.+..+|||...+
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~-~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~  159 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE-ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC  159 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence            1112 457789999999999999999999999998 66667799999999999999999999999998765556665568


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcchhHHHHHHHHHhhhcccccccccccchhhhcccccCCccHHHHH
Q psy195          194 FPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDIK  273 (691)
Q Consensus       194 w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~vi~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~k  273 (691)
                      |+.+|.+++++++++++++..+++++++.+|.+++..++.+++..+.+++...... +...+|++++.....+++++|+|
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~-~~~~~~ld~a~~~~~~~~V~evk  238 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE-HWPLHWLDYAKDKHDIRMIRSTK  238 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc-ccchhHHHHhccccccchHHHHH
Confidence            99999999999999999999999888877787787888888888777765433221 11156777766666667889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-C
Q psy195          274 TLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-R  352 (691)
Q Consensus       274 ~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s  352 (691)
                      ++++++++++..+++|..+.|.++.+..|+.+++.++  +++++++++++.+|++.++++.|++++.++|+++|++.+ +
T Consensus       239 rll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l--~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls  316 (654)
T TIGR00926       239 RLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDV--GGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFT  316 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCcc--CCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999998877  788999999999999999999999999999999999777 9


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCceeEEEEecCC--CceeEecCCCcc----cccccc--c---cc
Q psy195          353 PLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMD--CDFVFHSPLKNE----RVLRAM--D---ML  421 (691)
Q Consensus       353 ~l~~i~iG~ll~~~s~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~--~---~~  421 (691)
                      +++|+++|++++++++++++.+|..++++.+..|..+.+.+..+|..+  |.+.+..+..+.    .-+++.  +   ++
T Consensus       317 ~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (654)
T TIGR00926       317 SLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGL  396 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCcccccccccc
Confidence            999999999999999999999999999999999999999999999977  999998776431    123443  2   11


Q ss_pred             cccc-----c--cccccccccc-----cCCCCCCCcccccccceeeee-ccCCcceeeeeecchhhhhhcccCcceeeee
Q psy195          422 ALNN-----I--PINGTQHFAA-----LFEPSTSCPYVLNKTFQSSVL-GADGKITEYYLIRDEKQQAHLKRLGEFHDLR  488 (691)
Q Consensus       422 ~~~~-----~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (691)
                      .++.     .  +.+++  ...     ..|.+.++...+++++.++++ ..++..+.-...++ ...||++|.+.+|+++
T Consensus       397 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~  473 (654)
T TIGR00926       397 FTTKSSAKGWTLTYDLS--YDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKP-TDAKTEKGMGSVRLVN  473 (654)
T ss_pred             ccccccccccceEEEEe--ccccccccCCCCccccceeecCCceEEEEEecCCcceeeeeecC-ccCCCCCCCceEEEEe
Confidence            1111     1  12222  111     113333455667778888888 44443232233444 6679999999999999


Q ss_pred             ccCchhhhhhhhccccccccceeeecCCccc-cCCCCCCcccceeecC-cccceeeecccchhhh---ccccccCCceeE
Q psy195          489 NINSSLKMQILYGSELQGKRITLESDDGFYQ-DIDLPTGACYTEYIEG-IPAGVYEVRSENKVLK---SNMELQDDNVYV  563 (691)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  563 (691)
                      +.+++              -.+++.++.++. ..+..+.+.|..+..| .++..... .....+.   .....+.||.|+
T Consensus       474 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  538 (654)
T TIGR00926       474 TLNGE--------------FGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCD-RIDNAKSSTFLSNQLDMGIYYL  538 (654)
T ss_pred             cCCCc--------------ceeeEEecccCcccccCCcccccccccccceeeeeecc-cccccccccccccccccceEEE
Confidence            87554              034555555543 4444667888887777 66553311 1111111   112257799999


Q ss_pred             EeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHH
Q psy195          564 LNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVA  643 (691)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~  643 (691)
                      +.++++...+...++.+++.++|.+|++||+|||++++++|+++++|++||+|+|||++||+.++|+|+++.++||+|+.
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~  618 (654)
T TIGR00926       539 IVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVV  618 (654)
T ss_pred             EEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876521233367788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhccc
Q psy195          644 IVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRY  679 (691)
Q Consensus       644 ~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  679 (691)
                      ++++...++.||.+|++||++|++.+++|.++++.|
T Consensus       619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       619 VIAEFENFSVQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999876

>KOG1237|consensus

Probab=100.00  E-value=7.3e-50  Score=453.53  Aligned_cols=465  Identities=32%  Similarity=0.548  Sum_probs=399.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH
Q psy195           17 PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI   96 (691)
Q Consensus        17 ~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i   96 (691)
                      ...++++.++++.+.+++.+++++..++..|++..+|.+...+...+..+...+...++++++++|.|+||++++.++.+
T Consensus        33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~  112 (571)
T KOG1237|consen   33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSL  112 (571)
T ss_pred             echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh-cCCCC--------------Cch--h-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcch--hhhH
Q psy195           97 VYLGGNVLLTVTA-IDPLN--------------IPK--R-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQ--SAQL  156 (691)
Q Consensus        97 l~~ig~ill~~s~-~~~~~--------------~~~--~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~--~~~r  156 (691)
                      ++.+|+.++++++ .+.+.              ..+  + ..++.++.+.++|.|+.+|++.++.+|||++..+  ...+
T Consensus       113 i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~  192 (571)
T KOG1237|consen  113 ISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGI  192 (571)
T ss_pred             HHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCc
Confidence            9999988887663 33211              112  1 6888999999999999999999999999983222  3345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcchhHHHHH
Q psy195          157 EKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCT  236 (691)
Q Consensus       157 g~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~vi  236 (691)
                      .++++|+++..++|..++-.+..++++       +.+|..+|.++.+++++++++|+.+.+.|++++|.++|..++.+++
T Consensus       193 ~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vl  265 (571)
T KOG1237|consen  193 PSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVL  265 (571)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHH
Confidence            589999999999999999999989877       6889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccccccc---------------ccc-cchhhhcccc----------------cCCccHHHHHHHHHHHHHHHH
Q psy195          237 IRAIKNKFKTKKSE---------------RTK-EHWLDYANDK----------------YDQGTIEDIKTLLRILLLFVP  284 (691)
Q Consensus       237 ~~~i~~~~~~~~~~---------------~~~-~~~l~~~~~~----------------~~~~~v~~~k~~l~~l~l~~~  284 (691)
                      ..+.++|....+.+               +.+ .+++|++...                +..+++||.|++++.++++..
T Consensus       266 vaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~  345 (571)
T KOG1237|consen  266 VAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT  345 (571)
T ss_pred             HHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence            99998876433211               111 3455554321                456789999999999999999


Q ss_pred             HHHHHHHHhcccchHHHHHHHhcCcccCCc-eeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCC---C-CchhHHHH
Q psy195          285 LPIFWALFDQQGSRWTFQANRMDGRVFGTS-LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGL---N-RPLRKLTV  359 (691)
Q Consensus       285 ~~~~~~~~~q~~s~~~~~~~~~~~~l~~G~-~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~---~-s~l~~i~i  359 (691)
                      .++++.++.|+.+.++.|+..|++++  ++ +++|++.++.+..+.+++..|+.+++++|+.+|...   . ++++|+.+
T Consensus       346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~--~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~  423 (571)
T KOG1237|consen  346 TIIYSTVYAQMVTFFVLQATTMDRHL--GSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGI  423 (571)
T ss_pred             HHHHHHHHHhhhhheehhhhhcCCCC--CCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeec
Confidence            99999999999999999999999998  77 999999999999999999999999999999998754   2 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCC
Q psy195          360 GGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFE  439 (691)
Q Consensus       360 G~ll~~~s~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (691)
                      |+++..++|..++.+|.++.+....                                                       
T Consensus       424 G~~~si~sm~~aa~vE~krl~~~~~-------------------------------------------------------  448 (571)
T KOG1237|consen  424 GLVLSILSMAVAGIVEAKRLKTAVS-------------------------------------------------------  448 (571)
T ss_pred             cchHHHHHHHHHHHHHHHHhhhhhh-------------------------------------------------------
Confidence            9999999999999999876321000                                                       


Q ss_pred             CCCCCcccccccceeeeeccCCcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccc
Q psy195          440 PSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQ  519 (691)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (691)
                                                                                                      
T Consensus       449 --------------------------------------------------------------------------------  448 (571)
T KOG1237|consen  449 --------------------------------------------------------------------------------  448 (571)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcccceeecCcccceeeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHH
Q psy195          520 DIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYII  599 (691)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~  599 (691)
                                                                                   ...+++++|++||+|||++
T Consensus       449 -------------------------------------------------------------~~~~~~~mSi~W~iPQyvL  467 (571)
T KOG1237|consen  449 -------------------------------------------------------------LLVETNPMSILWQIPQYVL  467 (571)
T ss_pred             -------------------------------------------------------------ccCCCCCeeHHHHHHHHHH
Confidence                                                                         0123468899999999999


Q ss_pred             HHHHhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCc----------------hHHHHHHHHH
Q psy195          600 ITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFEN----------------QAYEFLLFAS  663 (691)
Q Consensus       600 ~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~----------------~~~~~~~~a~  663 (691)
                      +|++|++++++++||+|+|||++|||.++|+|+++.++||+++..+..+.....                -.++||+++.
T Consensus       468 ig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~  547 (571)
T KOG1237|consen  468 LGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAV  547 (571)
T ss_pred             HHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998766653322111                1347999999


Q ss_pred             HHHHHHHHHHhhhccceecCCCc
Q psy195          664 LMVVDMGVFALLAMRYKYVEEDE  686 (691)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~  686 (691)
                      +..++...|.+++++|++++.++
T Consensus       548 ~~~~n~~~~~~~~~~y~~~~~~~  570 (571)
T KOG1237|consen  548 YSAVNFLYFLICAKRYDYKDDKD  570 (571)
T ss_pred             HHhhhhhheEEEEEeeeeccccC
Confidence            99999999999999999987664

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-46  Score=408.40  Aligned_cols=447  Identities=28%  Similarity=0.433  Sum_probs=352.9

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch
Q psy195           12 SPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLL----YDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK   87 (691)
Q Consensus        12 ~~~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg----~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR   87 (691)
                      ..+...+|||.++.++.++++||++|||+...+..|++.+++    ++++++..+.+.|....++.+++|||++||++|+
T Consensus        12 ~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~   91 (498)
T COG3104          12 LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT   91 (498)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            445566799999999999999999999999999999999888    9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195           88 FLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus        88 kk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      ||++..|.+++++|+++++.++....     ..++++++++++|+|++++++.++++|++| +.+++ |...++++|+++
T Consensus        92 ~~tI~lGail~~iGh~~L~~~~~~~~-----~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~-~~Dpr-rD~gFt~fY~~i  164 (498)
T COG3104          92 RRTIVLGAILMAIGHLVLAISSVSGP-----GGLYIGLALIIVGTGLFKPNISSLLGELYP-KDDPR-RDGGFTLFYMGI  164 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccccc-----cHHHHHHHHHHhccccccccHHHHHHHhcC-CCCcc-cCCCccEEEEEe
Confidence            99999999999999999998741111     688999999999999999999999999998 66666 899999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCC--CCCcc-----hh-HHHHHHHH
Q psy195          168 NAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKP--KGNVA-----LE-VFQCTIRA  239 (691)
Q Consensus       168 nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~--~~~~~-----~~-i~~vi~~~  239 (691)
                      |+|++++|.+++++.+       +.||+.+|.++++.+.++++.++++++.+...+.  ...+.     .. ....+...
T Consensus       165 NiGsl~~p~i~~~~~~-------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (498)
T COG3104         165 NIGSLIAPIITGLLAI-------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI  237 (498)
T ss_pred             ehHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHH
Confidence            9999999999999987       6889999999999999999999999876654432  22221     11 11111111


Q ss_pred             Hhhh--cccccccccccchhh-----------hcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-
Q psy195          240 IKNK--FKTKKSERTKEHWLD-----------YANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR-  305 (691)
Q Consensus       240 i~~~--~~~~~~~~~~~~~l~-----------~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-  305 (691)
                      +...  ........  ...+.           .....+.+.+ +|+||++..+++++..++||+++.|.++.+..|+.+ 
T Consensus       238 ~~~~~~~~l~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~  314 (498)
T COG3104         238 LAALLTLLLNQNTF--SGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRN  314 (498)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence            1100  00000000  00000           0011233334 889999999999999999999999999999999876 


Q ss_pred             hcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q psy195          306 MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIA  385 (691)
Q Consensus       306 ~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~ll~~~s~li~a~v~~~~~~~~~~~  385 (691)
                      .+++.  .++++|++++|++|++.++++.|+++++++|+.++++..++..|+++|+.+++++++++........+     
T Consensus       315 v~~~~--~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~-----  387 (498)
T COG3104         315 VNRQI--FGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG-----  387 (498)
T ss_pred             hcccc--cceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC-----
Confidence            46664  45999999999999999999999999888887666532288999999999999999988777532210     


Q ss_pred             CCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccCCccee
Q psy195          386 PQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITE  465 (691)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (691)
                                                                                                      
T Consensus       388 --------------------------------------------------------------------------------  387 (498)
T COG3104         388 --------------------------------------------------------------------------------  387 (498)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccceeeecc
Q psy195          466 YYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRS  545 (691)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (691)
                                                                                                      
T Consensus       388 --------------------------------------------------------------------------------  387 (498)
T COG3104         388 --------------------------------------------------------------------------------  387 (498)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhH
Q psy195          546 ENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKS  625 (691)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~  625 (691)
                                                            .+++.|++|++|+|++++++|++.+|+|+|.+++.||++|+|
T Consensus       388 --------------------------------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s  429 (498)
T COG3104         388 --------------------------------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS  429 (498)
T ss_pred             --------------------------------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHH
Confidence                                                  012358999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhc-------CCchHHHHHHHHHHHHHHHHHHHhhhccce
Q psy195          626 AVSACWLLTTAFGNLIVAIVAEAKI-------FENQAYEFLLFASLMVVDMGVFALLAMRYK  680 (691)
Q Consensus       626 ~~~a~~~~~~~~g~~i~~~v~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  680 (691)
                      ..+|.|+++++.|+.+...+++..-       ....-..|...+...++..++...++++.+
T Consensus       430 ~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~  491 (498)
T COG3104         430 FIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN  491 (498)
T ss_pred             HHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999999999888877322       111122455555555555555555555444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.8e-38  Score=356.43  Aligned_cols=445  Identities=22%  Similarity=0.323  Sum_probs=341.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH
Q psy195           14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLV--LLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI   91 (691)
Q Consensus        14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~--lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i   91 (691)
                      ++..++||.++.+++.++++++++|++.++++.|++++  +|++..+++.+.+.+.++..++++++|+++||++||||++
T Consensus         3 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l   82 (475)
T TIGR00924         3 KTFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM   82 (475)
T ss_pred             CcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence            34567999999999999999999999999999999987  9999999999999999999999999999999933999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy195           92 VILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGS  171 (691)
Q Consensus        92 ~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~  171 (691)
                      .++.+++.++.++++.+..+       ..+++++++.|+|.|+..++.+++++|++| +.++++|++++++++++.|+|+
T Consensus        83 ~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~-~~~~~~r~~~~~~~~~~~niG~  154 (475)
T TIGR00924        83 VLGGIVLMLGHFMLAMSIYP-------DLIFYGLGTIAVGSGLFKANPSSMVGKLYE-RGDMPRRDGGFTLFYMSINIGS  154 (475)
T ss_pred             HHHHHHHHHHHHHHHhcccH-------hHHHHHHHHHHhccccccCCHHHHHHHhcC-CCCcccccceehhHHHHHHHHH
Confidence            99999999998888765322       667789999999999999999999999998 4444568999999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcchh----H-H--H----HHHHHH
Q psy195          172 LISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALE----V-F--Q----CTIRAI  240 (691)
Q Consensus       172 ~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~----i-~--~----vi~~~i  240 (691)
                      ++||.+++++.+       ..+|+..|.++++.++++++.++..++.+++.++++++...    . .  .    .+....
T Consensus       155 ~ig~~l~g~l~~-------~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (475)
T TIGR00924       155 FISPLLAGVIAE-------NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVF  227 (475)
T ss_pred             HHHHHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Confidence            999999999877       46899999998877777766666666555433322221110    0 0  0    000011


Q ss_pred             hhhcccccccccc--c--------chhhhcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-hcCc
Q psy195          241 KNKFKTKKSERTK--E--------HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR-MDGR  309 (691)
Q Consensus       241 ~~~~~~~~~~~~~--~--------~~l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~~~~  309 (691)
                      +..+........+  .        -+..+.. ........++++..+.+++++...++|+.+.|..++++.+..+ ++..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~  306 (475)
T TIGR00924       228 FCAWLMHHVVIANILLMTVTLAVIIFFFRLA-FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHE  306 (475)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence            1100000000000  0        0000000 0111222344555667888899999999999999998877654 7777


Q ss_pred             ccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q psy195          310 VFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQD  388 (691)
Q Consensus       310 l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~~s~li~a~v~~~~~~~~~~~~~~  388 (691)
                      .  +++++|+++++++|++.+++++|++++ +++.++||+.. +...|+.+|+++.+++++++++.....          
T Consensus       307 ~--~~~~ip~~~~~~~n~~~iil~~p~~~~-~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~----------  373 (475)
T TIGR00924       307 M--LGMSVPVIWFQSLNPFWVVVGSPVLAM-IWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA----------  373 (475)
T ss_pred             c--cceEECHHHHHhhhHHHHHHHHHHHHH-HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc----------
Confidence            7  788999999999999999999999994 56777776555 788899999999999999888763110          


Q ss_pred             CceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccCCcceeeee
Q psy195          389 RHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYL  468 (691)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (691)
                                                                     .                                
T Consensus       374 -----------------------------------------------~--------------------------------  374 (475)
T TIGR00924       374 -----------------------------------------------D--------------------------------  374 (475)
T ss_pred             -----------------------------------------------C--------------------------------
Confidence                                                           0                                


Q ss_pred             ecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccceeeecccch
Q psy195          469 IRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENK  548 (691)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (691)
                                                                                                      
T Consensus       375 --------------------------------------------------------------------------------  374 (475)
T TIGR00924       375 --------------------------------------------------------------------------------  374 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHH
Q psy195          549 VLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVS  628 (691)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~  628 (691)
                                                         ++.++|++|++||+++.+++|++.+|++.++.+++||+++||.++
T Consensus       375 -----------------------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       375 -----------------------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             -----------------------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence                                               001247999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCchH-HHHHHHHHHHHHHHHHHHhhhcccee
Q psy195          629 ACWLLTTAFGNLIVAIVAEAKIFENQA-YEFLLFASLMVVDMGVFALLAMRYKY  681 (691)
Q Consensus       629 a~~~~~~~~g~~i~~~v~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~  681 (691)
                      |+|.++.++|+.+...+........++ ..|...++++++..+++++..++.++
T Consensus       420 g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       420 GMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988877765554444 45667777777777777777776553

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=4.3e-38  Score=355.77  Aligned_cols=441  Identities=22%  Similarity=0.343  Sum_probs=340.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHH
Q psy195           15 EQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVIL   94 (691)
Q Consensus        15 ~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig   94 (691)
                      .+++|||.++.+++.+++++++||++..+++.|+++++|++..+++++.+.+....++.++++|+++||++||||++.++
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g   87 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG   87 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence            34679999999999999999999999999999999999999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy195           95 SIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIS  174 (691)
Q Consensus        95 ~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~ig  174 (691)
                      .+++.++.+++.++..+ .     ..++++|+++++|.|+.+|+..++++|+|| +.+ ++|++.++++++++|+|.++|
T Consensus        88 ~~~~~~g~~~~~~~~~~-~-----~ll~~~~~l~~ig~g~~~~~~~~li~~~~p-~~~-~~~~~~~~~~~~~~nig~~~g  159 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLK-P-----DLIFIALGTIAVGNGLFKANPASLLSKCYP-PKD-PRLDGAFTLFYMSINIGSLIS  159 (489)
T ss_pred             HHHHHHHHHHHHHhccc-h-----hHHHHHHHHHHhccccccCCHHHHHHHhcC-CCc-hhhhcchhHHHHHHHHHHHHH
Confidence            99999999888875321 0     446689999999999999999999999997 322 367889999999999999999


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhccccccc--CCCCCcc--hhHHHHH------HHHHhhhc
Q psy195          175 TFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKIN--KPKGNVA--LEVFQCT------IRAIKNKF  244 (691)
Q Consensus       175 p~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~--~~~~~~~--~~i~~vi------~~~i~~~~  244 (691)
                      |.+++++.+       ..|||++|+++++.++++++.+...++.+++.  +|++.+.  +......      ........
T Consensus       160 ~~l~g~l~~-------~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~  232 (489)
T PRK10207        160 LSLAPVIAD-------KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLM  232 (489)
T ss_pred             HHHHHHHHH-------hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999987       56899999998776666666666665444332  2222211  1111100      00000000


Q ss_pred             ccccccccc-c----------chhhhcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-hcCcccC
Q psy195          245 KTKKSERTK-E----------HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR-MDGRVFG  312 (691)
Q Consensus       245 ~~~~~~~~~-~----------~~l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~~~~l~~  312 (691)
                       ... .... .          .+..+   ..+ .+..+++|.+..+.++....++|..+.|..+.++.+..+ .++..  
T Consensus       233 -~~~-~~~~~~~~~~~~i~~~~f~~~---~~~-~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~--  304 (489)
T PRK10207        233 -HNV-EVANLVLIVLSIVVTIIFFRE---AFK-LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEI--  304 (489)
T ss_pred             -hhh-hHHHHHHHHHHHHHHHHHHHH---Hhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccc--
Confidence             000 0000 0          00000   011 123445667677777888899999999999999988864 66655  


Q ss_pred             CceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCce
Q psy195          313 TSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHF  391 (691)
Q Consensus       313 G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~~s~li~a~v~~~~~~~~~~~~~~~~~  391 (691)
                      .++++++++++++|++.++++.|+.+ .++|+++||+.. ++..|+.+|+++.++++++++.......            
T Consensus       305 ~G~~i~~~~~~~~n~~~iii~~pl~~-~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------------  371 (489)
T PRK10207        305 LGFSINPVSFQALNPFWVVVASPILA-GIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFA------------  371 (489)
T ss_pred             cceEECHHHHHhHhHHHHHHHHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc------------
Confidence            67889999999999999999999998 588999999877 9999999999999999888766542110            


Q ss_pred             eEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccCCcceeeeeecc
Q psy195          392 SLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRD  471 (691)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (691)
                                                                 ..                                   
T Consensus       372 -------------------------------------------~~-----------------------------------  373 (489)
T PRK10207        372 -------------------------------------------DA-----------------------------------  373 (489)
T ss_pred             -------------------------------------------CC-----------------------------------
Confidence                                                       00                                   


Q ss_pred             hhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccceeeecccchhhh
Q psy195          472 EKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLK  551 (691)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (691)
                                                                                                      
T Consensus       374 --------------------------------------------------------------------------------  373 (489)
T PRK10207        374 --------------------------------------------------------------------------------  373 (489)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHHHHH
Q psy195          552 SNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACW  631 (691)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~  631 (691)
                                                       ..+.|++|++++|++.|++|.++++++++++++.||++++|.++|+|
T Consensus       374 ---------------------------------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~  420 (489)
T PRK10207        374 ---------------------------------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW  420 (489)
T ss_pred             ---------------------------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence                                             00136899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc------CC-----chHHHHHHHHHHHHHHHHHHHhhhccceec
Q psy195          632 LLTTAFGNLIVAIVAEAKI------FE-----NQAYEFLLFASLMVVDMGVFALLAMRYKYV  682 (691)
Q Consensus       632 ~~~~~~g~~i~~~v~~~~~------~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  682 (691)
                      .++.++|+.++..++....      ++     .-...|..+++..++..++++++.++.++.
T Consensus       421 ~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999877764321      11     124567888888888888888888887754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=5.4e-36  Score=335.57  Aligned_cols=337  Identities=23%  Similarity=0.381  Sum_probs=257.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      +|||.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+.+..+++++++|+++||++||||++.+|.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.+++...... .     ..++++..+.++|.|..+++.+++++|+|| + ++++|+++++++|...|+|++++|.+
T Consensus        86 ~~lg~lll~~~~~~-~-----~~~~l~l~li~iG~G~~~~~~~alv~elfp-~-~~~~R~sgf~i~Y~~~nlG~~iap~l  157 (493)
T PRK15462         86 MAIGHVVLGASEIH-P-----SFLYLSLAIIVCGYGLFKSNVSCLLGELYE-P-TDPRRDGGFSLMYAAGNVGSIIAPIA  157 (493)
T ss_pred             HHHHHHHHHHhhcc-h-----hHHHHHHHHHHHhcccccccHHHHHHHHCC-C-CCccccceehHHHHHHHHHHHHHHHH
Confidence            99998766543210 0     335566677778899999999999999997 2 22468999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCC-CCCcc--hhHHH----HH-HHH-----Hhhhc
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKP-KGNVA--LEVFQ----CT-IRA-----IKNKF  244 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~-~~~~~--~~i~~----vi-~~~-----i~~~~  244 (691)
                      ++++.+       ..||+.+|.++++.++++++.++..++.+.+..+ ++++.  ++...    .+ ...     .....
T Consensus       158 ~g~L~~-------~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (493)
T PRK15462        158 CGYAQE-------EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVL  230 (493)
T ss_pred             HHHHHh-------hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999977       5689999999888787777777776655433211 11111  11000    00 000     00000


Q ss_pred             cccccccccc---------chhhhcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-hcCcccCCc
Q psy195          245 KTKKSERTKE---------HWLDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR-MDGRVFGTS  314 (691)
Q Consensus       245 ~~~~~~~~~~---------~~l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~~~~l~~G~  314 (691)
                      ...... ...         -+.-.. . ......+|+||+...+.++....+||..|.|.++.+.+++.+ .|+++  ++
T Consensus       231 ~~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~--~g  305 (493)
T PRK15462        231 FWKEWS-VYALIVATIIGLGVLAKI-Y-RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM--FG  305 (493)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHH-H-HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh--cc
Confidence            000000 000         000000 0 011345678899999999999999999999999999999866 78888  89


Q ss_pred             eeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy195          315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVE  375 (691)
Q Consensus       315 ~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~~s~li~a~v~  375 (691)
                      +++|+.++|++|++.++++.|++.. ++..+.|+++. +...|+.+|+++++++++++.+..
T Consensus       306 ~~ip~~~~qslNp~~ii~l~P~~a~-lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~  366 (493)
T PRK15462        306 YTVPTAMFQSINAFAVMLCGVFLAW-VVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSA  366 (493)
T ss_pred             eeeCHHHHHhHhHHHHHHHHHHHHH-HHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999995 44555444334 889999999999999998887655

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.8e-35  Score=335.67  Aligned_cols=446  Identities=24%  Similarity=0.352  Sum_probs=329.2

Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH
Q psy195           12 SPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI   91 (691)
Q Consensus        12 ~~~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i   91 (691)
                      +.+.+ ++||.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.......++++|+++||++|||+++
T Consensus        13 ~~~~~-~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~   91 (500)
T PRK09584         13 SLNAF-KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI   91 (500)
T ss_pred             Chhhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            34444 68899999999999999999999999999999999999999999998888888888889999999944999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy195           92 VILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGS  171 (691)
Q Consensus        92 ~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~  171 (691)
                      .++.++..++..+++++... .     ..++++++++|+|.|...++..++++|++| +. +++|++++++++++.|+|+
T Consensus        92 ~~g~~~~~ig~~l~~~~~~~-~-----~~l~~~~~l~gig~g~~~~~~~~l~~~~f~-~~-~~~~~~~~~~~~~~~~iG~  163 (500)
T PRK09584         92 MLGAIVLAIGYALVAWSGHD-A-----GIVYMGMATIAVGNGLFKANPSSLLSTCYE-KD-DPRLDGAFTMYYMSINIGS  163 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccc-H-----HHHHHHHHHHHHhhhcccCCHHHHHHHhcC-CC-chhhhhcchHHHHHHHHHH
Confidence            99999999998877764211 1     556788999999999999999999999997 32 3456678999999999999


Q ss_pred             HHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhccccccc--CCCCCcc--hhH----HHHHHHHHhhh
Q psy195          172 LISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKIN--KPKGNVA--LEV----FQCTIRAIKNK  243 (691)
Q Consensus       172 ~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~--~~~~~~~--~~i----~~vi~~~i~~~  243 (691)
                      ++||.+++++.+       ..||++.|.+.++.++++++.++..++.+++.  +|++++.  ...    ...........
T Consensus       164 ~~gp~i~g~l~~-------~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (500)
T PRK09584        164 FFSMLATPWLAA-------KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIAT  236 (500)
T ss_pred             HHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHH
Confidence            999999999987       57899999998877777666555544433332  1222211  111    11111111111


Q ss_pred             cccccccccc--cch------hhhcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-hcCcccCCc
Q psy195          244 FKTKKSERTK--EHW------LDYANDKYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANR-MDGRVFGTS  314 (691)
Q Consensus       244 ~~~~~~~~~~--~~~------l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~~~~l~~G~  314 (691)
                      ......+...  ...      .......+ +....|++|.+..+.+++..+++|..+.|.++.+..++.+ .++..  ++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~--~g  313 (500)
T PRK09584        237 WLLHNQEIARMALGVVALGIVVIFGKEAF-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSI--LG  313 (500)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccc--cc
Confidence            1000000000  000      00000011 1233456677777778888899999999999999998866 56566  67


Q ss_pred             eeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCceeEE
Q psy195          315 LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAPQDRHFSLR  394 (691)
Q Consensus       315 ~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~ll~~~s~li~a~v~~~~~~~~~~~~~~~~~~~~  394 (691)
                      +.+++++++++|++.++++.|+.++ +++.++||.  ++.+|+.+|++++++++++++......                
T Consensus       314 ~~i~~~~~~s~n~i~iil~~p~~~~-~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~----------------  374 (500)
T PRK09584        314 IAVEPEQYQALNPFWIMIGSPILAA-IYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFA----------------  374 (500)
T ss_pred             eEECHHHHHHHhHHHHHHHHHHHHH-HHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhc----------------
Confidence            8899999999999999999999985 443333331  788999999999999999887655211                


Q ss_pred             EEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccCCcceeeeeecchhh
Q psy195          395 IYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGADGKITEYYLIRDEKQ  474 (691)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (691)
                                                               .                                      
T Consensus       375 -----------------------------------------~--------------------------------------  375 (500)
T PRK09584        375 -----------------------------------------N--------------------------------------  375 (500)
T ss_pred             -----------------------------------------C--------------------------------------
Confidence                                                     0                                      


Q ss_pred             hhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccceeeecccchhhhccc
Q psy195          475 QAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGVYEVRSENKVLKSNM  554 (691)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (691)
                                                                                                      
T Consensus       376 --------------------------------------------------------------------------------  375 (500)
T PRK09584        376 --------------------------------------------------------------------------------  375 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHHHHHHHH
Q psy195          555 ELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLT  634 (691)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~  634 (691)
                                                   +.+.+|.+|++++|++.|++|++.+|.+++++.+.||+++||+++|+|.++
T Consensus       376 -----------------------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~  426 (500)
T PRK09584        376 -----------------------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLT  426 (500)
T ss_pred             -----------------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence                                         001246889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh------cCCc-----hHHHHHHHHHHHHHHHHHHHhhhccceecC
Q psy195          635 TAFGNLIVAIVAEAK------IFEN-----QAYEFLLFASLMVVDMGVFALLAMRYKYVE  683 (691)
Q Consensus       635 ~~~g~~i~~~v~~~~------~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  683 (691)
                      .++|+++...+....      .+..     -...|..++++.++..+++++..++.++..
T Consensus       427 ~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~  486 (500)
T PRK09584        427 TAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMT  486 (500)
T ss_pred             HHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987776321      1111     134667777777767777777777666543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.95  E-value=9.2e-28  Score=262.65  Aligned_cols=280  Identities=34%  Similarity=0.620  Sum_probs=199.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCch-h-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHH
Q psy195           88 FLTIVILSIVYLGGNVLLTVTAIDPLNIPK-R-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYF  165 (691)
Q Consensus        88 kk~i~ig~il~~ig~ill~~s~~~~~~~~~-~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~  165 (691)
                      +|++++|.+++++|++++++++.+.....+ . ..++++++++++|.|+.+|++.++++||++ +.++++|.++++|+|+
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~-~~~~~~~~~~F~~fY~   79 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD-EDDDSRRDSFFNWFYW   79 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS-TTTTTHHHHHHHHHHH
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc-ccchhhhhhhHHHHHH
Confidence            589999999999999998888766543221 1 688999999999999999999999999998 6657889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhccccccc-CCCCCcchh-HHHHHHHHHhhh
Q psy195          166 SINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKIN-KPKGNVALE-VFQCTIRAIKNK  243 (691)
Q Consensus       166 ~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~-~~~~~~~~~-i~~vi~~~i~~~  243 (691)
                      ++|+|+++++.+.+++.+       +.+|.++|.++++.++++++.++.+++++... +|.+++..+ ...+.....+++
T Consensus        80 ~in~G~~~~~~~~~~i~~-------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (372)
T PF00854_consen   80 GINIGSLFSPTLVPYIQQ-------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKR  152 (372)
T ss_dssp             HHHHHHHHHHHCCCHHHH-------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHH
T ss_pred             HHhhhhHhhcccchhhcc-------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHh
Confidence            999999999999999987       68899999999999999999999999988877 666676666 333333333333


Q ss_pred             cccccccc----------cc----c--chhh---------hccc-ccCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy195          244 FKTKKSER----------TK----E--HWLD---------YAND-KYDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGS  297 (691)
Q Consensus       244 ~~~~~~~~----------~~----~--~~l~---------~~~~-~~~~~~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s  297 (691)
                      ....+.+.          +.    .  ....         .... ...++++++.|...+.++.+.+..+++..+.|...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~  232 (372)
T PF00854_consen  153 KLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNT  232 (372)
T ss_dssp             CCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHH
T ss_pred             hcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhh
Confidence            32221100          00    0  0000         0000 12345667777777777888888888888888777


Q ss_pred             hHHHHHHHhcCcccCCc-eeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Q psy195          298 RWTFQANRMDGRVFGTS-LEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVE  375 (691)
Q Consensus       298 ~~~~~~~~~~~~l~~G~-~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~~s~li~a~v~  375 (691)
                      ....+...++...  ++ +++|++.++++|++.++++.|+++++++|+++ ++.. +++.|+.+|++++++++++++.++
T Consensus       233 ~~~~~~~~~~~~~--~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~~~~~~k~~~G~~~~~~~~~~~~~v~  309 (372)
T PF00854_consen  233 FFLLQVPQMDRGI--GGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQPSPPQKFGIGMVFAILAMFVAAIVE  309 (372)
T ss_dssp             HHHHCGGGTTT-S--S------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T------HHHHHHH-HHHHHHHHTTTHHH
T ss_pred             HHHHhcccccccc--ccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            7777777777766  66 88999999999999999999999999999888 4444 899999999999999999998888


Q ss_pred             Hhh
Q psy195          376 FNI  378 (691)
Q Consensus       376 ~~~  378 (691)
                      ..+
T Consensus       310 ~~r  312 (372)
T PF00854_consen  310 IRR  312 (372)
T ss_dssp             H--
T ss_pred             hhh
Confidence            643

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0569|consensus

Probab=99.89  E-value=5.2e-22  Score=220.23  Aligned_cols=387  Identities=14%  Similarity=0.136  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhh
Q psy195           60 TVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPC  138 (691)
Q Consensus        60 g~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~  138 (691)
                      +.+++++.+|.++|++++|+++||+ |||..++++.++..++.++...+. .+..     .+++++|++.|+..|.....
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~~-----e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPSF-----EMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHhHHHHHH
Confidence            5678899999999999999999998 999999999998888888777663 2222     78999999999999999999


Q ss_pred             hhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccccCCCCchhHHHHHHHHHHH--HHHHHHHhh
Q psy195          139 VSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP-IFRHDMQCFGQEACFPLAFGVPALLMF--LAIIVFIIG  215 (691)
Q Consensus       139 ~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~-~l~~~~~~~g~~~~w~~~F~i~~~l~~--l~~l~~~~~  215 (691)
                      .+.|+.|    .+|.+.||.......++.++|.++|..++. .+..+      ...|++.+.+..+..+  +++..++++
T Consensus       137 ~pmyl~E----~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt------~~~W~~l~~~~~i~~~~~l~~l~~~PE  206 (485)
T KOG0569|consen  137 VPMYLTE----ISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT------EDLWPYLLAFPLIPALLQLALLPFLPE  206 (485)
T ss_pred             HHHHHhh----cChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC------CcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999    555999999999999999999998855443 33321      5679988877776444  444556677


Q ss_pred             ccccccc-CCCCCcchhHHHHHHHHHhhhcccccccccc-cchh--hhccccc--CCccH-------HHHHHHHHHHHHH
Q psy195          216 KPMYKIN-KPKGNVALEVFQCTIRAIKNKFKTKKSERTK-EHWL--DYANDKY--DQGTI-------EDIKTLLRILLLF  282 (691)
Q Consensus       216 ~~~~~~~-~~~~~~~~~i~~vi~~~i~~~~~~~~~~~~~-~~~l--~~~~~~~--~~~~v-------~~~k~~l~~l~l~  282 (691)
                      +|+|.-. +.+.+++++.++       ..+... .+.++ ++..  .+.+...  .+...       ..++..+..+.+.
T Consensus       207 SPk~Ll~~k~~~~~A~~sl~-------~y~G~~-~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~  278 (485)
T KOG0569|consen  207 SPKYLLIKKGDEEEARKALK-------FYRGKE-DVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS  278 (485)
T ss_pred             CcchHHHHcCCHHHHHHHHH-------HHhCCC-cchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence            7777544 333333333322       222111 11111 1111  1111111  11111       1133444455666


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHhcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q psy195          283 VPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGL  362 (691)
Q Consensus       283 ~~~~~~~~~~~q~~s~~~~~~~~~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~l  362 (691)
                      +.+++.+.....+|++..+...+.....    .+..+..+..+|....++..     ++.|.++||..      +..+..
T Consensus       279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~----a~~an~~~g~v~~~~t~~~~-----~lid~~gRRpL------ll~~~~  343 (485)
T KOG0569|consen  279 FAQQFSGINAIFFYSTSIFKTAGFTPEE----AQYANLGIGIVNLLSTLVSP-----FLIDRLGRRPL------LLISLS  343 (485)
T ss_pred             HHHHhcCcceeHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHhcCCcHH------HHHHHH
Confidence            6677777766666666655533322211    01112333444444444444     44445687764      677777


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCC
Q psy195          363 LAALSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPST  442 (691)
Q Consensus       363 l~~~s~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (691)
                      ++.++.+++.+.....+...+   --....+.+...+.|.|.                                      
T Consensus       344 ~~~~~~~~~~~~~~l~~~~~~---~~~y~~i~~~~~~~~~f~--------------------------------------  382 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNSFGS---WLSYLCIAAIFLFIISFA--------------------------------------  382 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhh--------------------------------------
Confidence            777766666555543311000   000000000000000000                                      


Q ss_pred             CCcccccccceeeeeccCCcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCC
Q psy195          443 SCPYVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDID  522 (691)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (691)
                                                                                                      
T Consensus       383 --------------------------------------------------------------------------------  382 (485)
T KOG0569|consen  383 --------------------------------------------------------------------------------  382 (485)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccceeecCcccceeeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHH
Q psy195          523 LPTGACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITA  602 (691)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~  602 (691)
                                                       .+                             .-++.|.++       
T Consensus       383 ---------------------------------~G-----------------------------~gpi~~fi~-------  393 (485)
T KOG0569|consen  383 ---------------------------------IG-----------------------------PGPIPWFIG-------  393 (485)
T ss_pred             ---------------------------------cC-----------------------------CCchhHHHH-------
Confidence                                             01                             126999999       


Q ss_pred             HhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhccceec
Q psy195          603 AEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYV  682 (691)
Q Consensus       603 ~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  682 (691)
                      +|.+             |++-|+.+++...+.+|++|+++....+....-.+.+.|++|++.+++..++.+...+|+|+|
T Consensus       394 aELf-------------~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  394 AELF-------------PQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHhC-------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            9999             999999999999999999999998888776554556889999999999999999999999999


Q ss_pred             CCCccc
Q psy195          683 EEDEDE  688 (691)
Q Consensus       683 ~~~~~~  688 (691)
                      +.+|+.
T Consensus       461 ~~~eI~  466 (485)
T KOG0569|consen  461 TPYEII  466 (485)
T ss_pred             CHHHHH
Confidence            977653

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.88  E-value=2.9e-19  Score=196.37  Aligned_cols=177  Identities=15%  Similarity=0.061  Sum_probs=145.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH
Q psy195           17 PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI   96 (691)
Q Consensus        17 ~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i   96 (691)
                      .+..|.+..+.+..+...++.....+.++.++.+++|.|..+.|++.+++.++..++.++.|+++||+ ||||++..+.+
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~   89 (399)
T PRK05122         11 LRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLC   89 (399)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHH
Confidence            34567777788888888888888888999999999999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTAI-DPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus        97 l~~ig~ill~~s~~-~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      ++.++.+.+..+.. .+........++++|++.|+|.+...+...++..|++|    +++|+++.++...+.++|..+|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~  165 (399)
T PRK05122         90 GCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG----ALHTGRVISWNGIATYGALAIGA  165 (399)
T ss_pred             HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC----hhhhccchhhhhhhhhHHHHHHH
Confidence            88777665544321 10000001578899999999999999999999999887    88899999999999999999999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHH
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLM  205 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~  205 (691)
                      .+++.+.+       ..+|+..+.+..++.
T Consensus       166 ~l~~~l~~-------~~g~~~~~~~~~~~~  188 (399)
T PRK05122        166 PLGVLLYH-------WGGLAGLGLLIMLLA  188 (399)
T ss_pred             HHHHHHHH-------cccHHHHHHHHHHHH
Confidence            99998876       467998777655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.87  E-value=3.3e-19  Score=196.96  Aligned_cols=176  Identities=19%  Similarity=0.258  Sum_probs=151.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHH
Q psy195           14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVI   93 (691)
Q Consensus        14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~i   93 (691)
                      ++.+|.+|  ++++...++...+++.+.+.++.|+++++|++..+.|.+.+...+...+..+++|+++||+ |||+++.+
T Consensus         5 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~   81 (400)
T PRK11646          5 SQARNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVT   81 (400)
T ss_pred             cccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHH
Confidence            44567777  5666778888999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy195           94 LSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI  173 (691)
Q Consensus        94 g~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i  173 (691)
                      +.++..++.+++.....+       +.++++|++.|++.+...+...+++.|.+|    +++|+++.++.+...++|..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~-------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~g~~i  150 (400)
T PRK11646         82 GMLMRAAGFATMAIAHEP-------WLLWLSCILSGLGGTLFDPPRTALVIKLIR----PHQRGRFFSLLMMQDSAGAVI  150 (400)
T ss_pred             HHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHH
Confidence            999988888877664322       678899999999999999999999999877    889999999999999999999


Q ss_pred             HHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          174 STFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       174 gp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      ||.+++++..        .+|+..|++.++..++..++
T Consensus       151 g~~l~g~l~~--------~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        151 GALLGSWLLQ--------YDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHH
Confidence            9999998864        46999988877655544433

>KOG0254|consensus

Probab=99.87  E-value=7.9e-21  Score=216.75  Aligned_cols=279  Identities=16%  Similarity=0.164  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchh
Q psy195           57 KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIK  136 (691)
Q Consensus        57 ~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~  136 (691)
                      .+.+++.+...+++.++.+++|.++|++ |||++++++.+++.+|.++.+.+..  .     .+++++|++.|+|.|+..
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~--~-----~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS--W-----YQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh--H-----HHHHHHHHHhccchhhhh
Confidence            3558999999999999999999999998 9999999999999999999988742  2     899999999999999999


Q ss_pred             hhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHH--HHHh
Q psy195          137 PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAII--VFII  214 (691)
Q Consensus       137 ~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l--~~~~  214 (691)
                      ..+|.+++|    .++++.||...+..++..++|..++..++....+.      ..+||..+.+..+..++.++  .+.+
T Consensus       161 ~~~piy~sE----iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~------~~~Wr~~~~~~~i~~~~~~~~~~~~p  230 (513)
T KOG0254|consen  161 VLAPVYISE----IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV------YAGWRIPLGLALIPAVILALGMLFLP  230 (513)
T ss_pred             hcchhhHhh----cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC------CccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999    45599999999999999999999996666554331      13799777765554333333  3333


Q ss_pred             hcccccccCCCCCcchhHHHHHHHHHhhhcccccccccc--cchh-hhcccc--------cCCcc-HHHHHHHHHHHHHH
Q psy195          215 GKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTK--EHWL-DYANDK--------YDQGT-IEDIKTLLRILLLF  282 (691)
Q Consensus       215 ~~~~~~~~~~~~~~~~~i~~vi~~~i~~~~~~~~~~~~~--~~~l-~~~~~~--------~~~~~-v~~~k~~l~~l~l~  282 (691)
                      .+|++..++.+..+..+.++       +.+...+.+.+.  .+.. +.....        +.+.. ..-.|+....+.+.
T Consensus       231 esp~~L~~~g~~~~a~~~l~-------~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~  303 (513)
T KOG0254|consen  231 ESPRWLIEKGRLEEAKRSLK-------RLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQ  303 (513)
T ss_pred             CChHHHHHcCChHHHHHHHH-------HHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHH
Confidence            45554433222222222111       111101111111  0000 000000        00000 12345666677888


Q ss_pred             HHHHHHHHHHhcccchHHHHHHHhcCc-ccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q psy195          283 VPLPIFWALFDQQGSRWTFQANRMDGR-VFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGG  361 (691)
Q Consensus       283 ~~~~~~~~~~~q~~s~~~~~~~~~~~~-l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~  361 (691)
                      .+++..+.+...+|+....+..+.... .      .....+..++.+..++..     ++.|.++||..      +..|.
T Consensus       304 ~fqq~tG~~~~~~Y~~~if~~~g~~~~~~------~~~~~~~~v~~~~t~~~~-----~lvd~~gRr~l------ll~s~  366 (513)
T KOG0254|consen  304 LFQQLTGINYVFYYSTTIFKSAGLKSDTF------LASIILGVVNFLGTLVAT-----YLVDRFGRRKL------LLFGA  366 (513)
T ss_pred             HHHHHhCCceEEeehHHHHHhcCCCCchH------HHHHHHHHHHHHHHHHHH-----HHHHHhccHHH------HHHhH
Confidence            888888888888888777655443321 1      112233334444444433     44455687765      88899


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy195          362 LLAALSFVVSALVEFN  377 (691)
Q Consensus       362 ll~~~s~li~a~v~~~  377 (691)
                      ..+++++++.+..-..
T Consensus       367 ~~m~~~~~~~~~~~~~  382 (513)
T KOG0254|consen  367 AGMSICLVILAVVGVF  382 (513)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999888877653

>PRK12382 putative transporter; Provisional

Probab=99.86  E-value=1e-18  Score=191.78  Aligned_cols=173  Identities=13%  Similarity=0.072  Sum_probs=138.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      ...+.++.+.+..++...+.....+.+|.|+.+++|+|..+.|++.+.+.++..++++++|+++||+ ||||++.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLA   90 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHH
Confidence            3456666666777777777777778899999999999999999999999999999999999999998 999999998887


Q ss_pred             HHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        98 ~~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      ..++.+...... .+.....+...++++|++.|+|.+...+...+++.|.+|    +++|++++++...+.+.|..++|.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~a~~~~~~~~~~g~~~g~~  166 (392)
T PRK12382         91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVG----PKHSGKVMSWNGMAMYGALAAGAP  166 (392)
T ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----ccccchhhhHHHHHHHHHHHHHHH
Confidence            766654332221 110000011678899999999999988888889999887    889999999999999999999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPA  202 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~  202 (691)
                      +++++.+       ..+|+..+.+..
T Consensus       167 ~~~~l~~-------~~g~~~~~~~~~  185 (392)
T PRK12382        167 LGLLLHS-------HFGFAALALTTM  185 (392)
T ss_pred             HHHHHHh-------ccChHHHHHHHH
Confidence            9988866       467887665543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.85  E-value=6.3e-19  Score=198.33  Aligned_cols=153  Identities=11%  Similarity=0.101  Sum_probs=119.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhc--CCCC-Cc-hh-HHHHHHHHH
Q psy195           53 LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAI--DPLN-IP-KR-TFTLVGLLL  127 (691)
Q Consensus        53 g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~--~~~~-~~-~~-~~l~i~~~l  127 (691)
                      +++..+++++.+++.++..++++++|+++||+ ||||++.++.+++.++.++.+.+..  .... .. .. ..++++|++
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            89999999999999999999999999999998 9999999999998888777665321  0000 00 11 567899999


Q ss_pred             HHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCCCchhHHHHHHHHHHH
Q psy195          128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDM-QCFGQEACFPLAFGVPALLMF  206 (691)
Q Consensus       128 ~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~-~~~g~~~~w~~~F~i~~~l~~  206 (691)
                      .|++.|...+..+++++|++|    +++|++.++....+..+|.++++.++..+.... ...-...+||+.|.+.++..+
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~----~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~  205 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAP----AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPAL  205 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCC----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHH
Confidence            999999999999999999887    889999999999999999999888776553210 000014579999988766555


Q ss_pred             HHHH
Q psy195          207 LAII  210 (691)
Q Consensus       207 l~~l  210 (691)
                      +.++
T Consensus       206 ~~~~  209 (479)
T PRK10077        206 LFLM  209 (479)
T ss_pred             HHHH
Confidence            4443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.85  E-value=3.4e-18  Score=187.69  Aligned_cols=170  Identities=11%  Similarity=0.084  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .++.+.+..++.....+...+.+| .+.+++|.+..+.|++.+.+.++..++.++.|+++||+ ||||++..+.++..++
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   87 (390)
T PRK03545         10 RVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIAS   87 (390)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence            344444444443333333333344 45678999999999999999999999999999999998 9999999999998888


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++...+..  .     +.++++|+++|++.+...+...++++|++|    +++|++++++...+.++|.+++|.+++.+
T Consensus        88 ~~~~~~~~~--~-----~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545         88 HVLSALAWN--F-----TVLLISRIGIAFAHAIFWSITASLAIRVAP----AGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             HHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----hhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            887776532  2     788999999999999988999999999887    88999999999999999999999999988


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      .+       ..+||+.|.+.+++.++..+.
T Consensus       157 ~~-------~~gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        157 GQ-------YLGWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HH-------HhcHHHHHHHHHHHHHHHHHH
Confidence            76       468999999877665554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.85  E-value=1.7e-18  Score=191.90  Aligned_cols=172  Identities=14%  Similarity=0.101  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+..++...++..++.......+|.+. ++++.+..++|++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG   95 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence            344444455566666555555666665 45788999999999999999999999999999998 9999999888777776


Q ss_pred             HHHHHHhh---cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          102 NVLLTVTA---IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       102 ~ill~~s~---~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      .+++....   .+++     +.+++.|++.|++.|...++..+++.|.+|    +++|+++.++.+...++|..+||.++
T Consensus        96 ~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~  166 (417)
T PRK10489         96 FIGLALNAFLPEPSL-----LAIYLLGLWDGFFGSLGVTALLAATPALVG----RENLMQAGAITMLTVRLGSVISPALG  166 (417)
T ss_pred             HHHHHHHHHcCCCcH-----HHHHHHHHHHHHHHHHHHHHHhhhhhhccC----HHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence            66554321   1111     667789999999998888888899999776    78899999999999999999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +.+.+       ..+|++.|.+.++..+++.+.
T Consensus       167 g~l~~-------~~~~~~~~~~~~~~~~~~~~~  192 (417)
T PRK10489        167 GLLIA-------AGGVAWNYGLAAAGTFITLLP  192 (417)
T ss_pred             HHHHH-------HHhhHHHHHHHHHHHHHHHHH
Confidence            98876       356888888766655544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.84  E-value=1.4e-17  Score=183.67  Aligned_cols=173  Identities=12%  Similarity=0.035  Sum_probs=134.5

Q ss_pred             chHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERF---CYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI   96 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~---~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i   96 (691)
                      ++..+..+...+.+..   +.....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            4444444444444433   33334444554 4578999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        97 l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +..++.++...+..  .     +.+++.|++.|++.+...+...+++.|.+|    +++|.+..++......+|..++|.
T Consensus        87 ~~~~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402         87 FFILTCLAILLAQS--I-----EQFTLLRFLQGIGLCFIGAVGYAAIQESFE----EADAIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             HHHHHHHHHHHHcc--H-----HHHHHHHHHHHhHhhhHHHHHHHHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777665432  2     678899999999999888888999999887    778888888888888889999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      +++.+.+       ..+|+..|.+.+++.++..+..
T Consensus       156 i~~~l~~-------~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        156 VGAALIH-------VLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHH-------ccCccHHHHHHHHHHHHHHHHH
Confidence            9988876       4679999988776655554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.84  E-value=1.8e-18  Score=196.66  Aligned_cols=160  Identities=14%  Similarity=0.111  Sum_probs=121.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHH
Q psy195           53 LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPK-RTFTLVGLLLIAVG  131 (691)
Q Consensus        53 g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~-~~~l~i~~~l~gig  131 (691)
                      +.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++.+.+...  .... ...++++|++.|++
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~  128 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS--SPKSVMATLCFWRFWLGVG  128 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999999998 99999999999988888777664210  0000 16789999999999


Q ss_pred             hhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-c---------------CCCCchh
Q psy195          132 TGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC-F---------------GQEACFP  195 (691)
Q Consensus       132 ~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~-~---------------g~~~~w~  195 (691)
                      .|+..+..+.+++|.+|    +++|+++.++.+....+|.++++.++..+...... .               ....+||
T Consensus       129 ~g~~~~~~~~~~~e~~p----~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR  204 (502)
T TIGR00887       129 IGGDYPLSAIITSEFAT----KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR  204 (502)
T ss_pred             HhhhhHHHHHHHHHhcC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence            99999999999999888    99999999999999999999999887654321000 0               0013699


Q ss_pred             HHHHHHHHHHHHHHH--HHHhhcccc
Q psy195          196 LAFGVPALLMFLAII--VFIIGKPMY  219 (691)
Q Consensus       196 ~~F~i~~~l~~l~~l--~~~~~~~~~  219 (691)
                      ..|.+.++..++..+  .+++++|++
T Consensus       205 ~~~~~~~ip~~i~~~~~~~lpESpr~  230 (502)
T TIGR00887       205 ILIGFGAVPALLALYFRLTIPETPRY  230 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            998776654443333  234455554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10054 putative transporter; Provisional

Probab=99.84  E-value=3.3e-18  Score=188.77  Aligned_cols=174  Identities=14%  Similarity=0.183  Sum_probs=149.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      +.+|+++.+.+..++...+++...++++.|+++++|++..++|++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            3577888888889999999999999999999999999999999999999999999999999999997 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.+++.+....       +.+++++.+.+.+.+...++..++.+|.+|    +++|++.+++.+...++|.++||.+
T Consensus        83 ~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~lg~~igp~l  151 (395)
T PRK10054         83 FASGFIAIPLVNNV-------TLVVLFFALINCAYSVFSTVLKAWFADNLS----STSKTKIFSLNYTMLNIGWTVGPPL  151 (395)
T ss_pred             HHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777665321       566677888888888888889999999776    8889999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      ++++..        .+|+..|.+.+++.++++++
T Consensus       152 ~~~l~~--------~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        152 GTLLVM--------QSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHH--------hccCcHHHHHHHHHHHHHHH
Confidence            998764        36898888877666655433

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=1.3e-17  Score=187.75  Aligned_cols=180  Identities=12%  Similarity=0.095  Sum_probs=149.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      +.++.++.+.+..++..+..+.+.+.+|.+.. ++|.+..+.+++.+.+.++..++.+++|+++||+ ||||++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~   84 (471)
T PRK10504          7 SVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVL   84 (471)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence            34567777888788877787777787888775 6999999999999999999999999999999998 999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.++...+..  .     ..++++|++.|+|.|...+...+++.|.+|    +++|++..++.....++|..+||.+
T Consensus        85 ~~~~~~~~~~~~~--~-----~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         85 FTLGSLFCALSGT--L-----NELLLARVLQGVGGAMMVPVGRLTVMKIVP----REQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             HHHHHHHHHHhCC--H-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            8877776655422  2     678899999999999999999999999887    8899999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      ++.+.+       ..+|++.|.+......++.+......+
T Consensus       154 ~g~l~~-------~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        154 GGLLVE-------YASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHh-------hccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            998877       467999998877655555544444333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.83  E-value=1e-17  Score=196.72  Aligned_cols=157  Identities=17%  Similarity=0.067  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q psy195           41 RTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTF  120 (691)
Q Consensus        41 ~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~  120 (691)
                      ...+...+.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++.+++..  .     +.
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s--~-----~~  257 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG--Y-----GF  257 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh--H-----HH
Confidence            44455667778999999999999999999999999999999998 9999999999888888877766522  2     78


Q ss_pred             HHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cC---CCCch
Q psy195          121 TLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC---FG---QEACF  194 (691)
Q Consensus       121 l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~---~g---~~~~w  194 (691)
                      ++++|++.|+|.|+..+..+++++|.+|    ++.|+..+++...+..+|.++++.++..+....++   .+   ...+|
T Consensus       258 llv~R~l~G~g~g~~~p~~~~~isE~~p----~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gW  333 (742)
T TIGR01299       258 FLFCRLLSGFGIGGAIPIVFSYFAEFLA----QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSW  333 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccH
Confidence            8899999999999999999999999887    89999999999999999999999877655431110   00   02469


Q ss_pred             hHHHHHHHHHHHHHH
Q psy195          195 PLAFGVPALLMFLAI  209 (691)
Q Consensus       195 ~~~F~i~~~l~~l~~  209 (691)
                      |+.|++.++..++++
T Consensus       334 R~l~~i~~lp~ll~l  348 (742)
T TIGR01299       334 RVFVIVCAFPCVFAI  348 (742)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988877665544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.83  E-value=3.2e-17  Score=180.55  Aligned_cols=168  Identities=17%  Similarity=0.127  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+...+...++..+..+......| .+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   93 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGLF   93 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHH
Confidence            333444444444444444433344 45577999999999999999999999999999999998 9999999998888777


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++......  .     ..++++|++.|++.+...+...++++|.+|    +++|+++.++.+.+.++|..+++.+++.+
T Consensus        94 ~~~~~~~~~--~-----~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551         94 SLATAQAWD--F-----PSLLVARLLTGVGLGGALPNLIALTSEAVG----PRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             HHHHHHhcc--H-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766665422  2     778899999999999999999999999887    88999999999999999999999988777


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      .+       ..+|+..|.+.+++.++..
T Consensus       163 ~~-------~~~~~~~~~~~~~~~~~~~  183 (406)
T PRK11551        163 AG-------DAAWRHIFYVGGVGPLLLV  183 (406)
T ss_pred             cc-------ccCHHHHHHHHHHHHHHHH
Confidence            65       4679998888665544443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.83  E-value=1.8e-17  Score=178.06  Aligned_cols=169  Identities=12%  Similarity=0.032  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHH
Q psy195           26 IVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLL  105 (691)
Q Consensus        26 l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill  105 (691)
                      ++...++..++.......+|.|.. +++.+..+.+++.+++.++..++.++.|+++||+ ||||++.++.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445566666666666667777775 5899999999999999999999999999999998 99999999988877777666


Q ss_pred             HHhhc-C--CCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          106 TVTAI-D--PLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       106 ~~s~~-~--~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      ..... +  +.     +.++++|++.|++.+...+...++++|.+|    +++|++.+++.+.+.++|.++||.+++.+.
T Consensus        82 ~~~~~~~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900        82 PFVALLGGLNI-----WQVYVLAGILAIAQAFFTPAYQAMLPDLVP----EEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHcCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            55431 1  12     778899999999999999999999999887    789999999999999999999999999887


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      +       ..+|+..|.+.++..+++.+..
T Consensus       153 ~-------~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       153 A-------TLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             H-------HhhHHHHHHHHHHHHHHHHHHH
Confidence            6       4679998888766555544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.83  E-value=2.1e-17  Score=178.37  Aligned_cols=152  Identities=12%  Similarity=0.112  Sum_probs=131.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q psy195           43 VLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTL  122 (691)
Q Consensus        43 ~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~  122 (691)
                      ....++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+.+..  .     +.++
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~   86 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAGA--Y-----VSLY   86 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHcC--H-----HHHH
Confidence            344457788999999999999999999999999999999998 9999999999988888887776532  2     7889


Q ss_pred             HHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHH
Q psy195          123 VGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPA  202 (691)
Q Consensus       123 i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~  202 (691)
                      ++|++.|++.|...+...++++|.+|    +++|++.+++.....++|.++++.+++.+.+       ..+|+..|.+.+
T Consensus        87 ~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~~~~~  155 (399)
T TIGR00893        87 ILRVLLGAAEAPFFPGIILIVASWFP----ASERATAVSIFNSAQGLGGIIGGPLVGWILI-------HFSWQWAFIIEG  155 (399)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCC----HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------hCCchHHHHHHH
Confidence            99999999999999999999999887    8899999999999999999999999998766       467999998877


Q ss_pred             HHHHHHHHHHH
Q psy195          203 LLMFLAIIVFI  213 (691)
Q Consensus       203 ~l~~l~~l~~~  213 (691)
                      ++.++..++..
T Consensus       156 ~~~~~~~~~~~  166 (399)
T TIGR00893       156 VLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHHHhh
Confidence            66555544433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.83  E-value=7.7e-18  Score=187.08  Aligned_cols=140  Identities=18%  Similarity=0.328  Sum_probs=117.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhc-CCCCCchhHHHHHHHHHHHHHh
Q psy195           54 YDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAI-DPLNIPKRTFTLVGLLLIAVGT  132 (691)
Q Consensus        54 ~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~-~~~~~~~~~~l~i~~~l~gig~  132 (691)
                      .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.++...... .+.     +.++++|++.|+|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~l~G~~~  141 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFALSV-----EMLIVGRVLLGIGV  141 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHhhh
Confidence            3389999999999999999999999999998 9999999999998888888765422 111     47899999999999


Q ss_pred             hchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          133 GGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT---PIFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       133 G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~---~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      |...+...++++|.+|    +++|+++.++.+.+.++|.++++.++   .....       ..+||+.|.+.++..++.+
T Consensus       142 ~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-------~~~w~~~f~~~~~~~~~~~  210 (481)
T TIGR00879       142 GIASALVPMYLSEIAP----KALRGALTSLYQLAITFGILVAYGFGSGKVSLNN-------TLGWRIPLGLQLIPAGLLF  210 (481)
T ss_pred             hHHHhHHHHHHHccCC----hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-------CccHHHHHHHHHHHHHHHH
Confidence            9999999999999887    88999999999999999999999988   44333       4689999988655444443


Q ss_pred             H
Q psy195          210 I  210 (691)
Q Consensus       210 l  210 (691)
                      +
T Consensus       211 ~  211 (481)
T TIGR00879       211 L  211 (481)
T ss_pred             H
Confidence            3

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.82  E-value=8.3e-17  Score=174.95  Aligned_cols=175  Identities=10%  Similarity=0.078  Sum_probs=140.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++..+.+....+....+.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            344444444444445555555555554 4567999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++......  .     +.++++|++.|++.+...+...+++.|.+|    +++|++.+++.+...++|..+++.+++
T Consensus        82 ~~~~~~~~~~~--~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        82 LSSLGLALSNN--I-----ETLLVLRFVQAFGASAGSVISQALVRDIYP----GEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHcc--H-----HHHHHHHHHHHcchhHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887766532  2     778899999999999999999999999887    889999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      .+.+       ..+|+..|.+.++..++..+....
T Consensus       151 ~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       151 YILV-------WLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHH-------HcCHHHHHHHHHHHHHHHHHHHHH
Confidence            8876       467999888877665555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.82  E-value=1.1e-16  Score=176.50  Aligned_cols=177  Identities=14%  Similarity=0.153  Sum_probs=144.9

Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH
Q psy195           13 PSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV   92 (691)
Q Consensus        13 ~~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~   92 (691)
                      .+..++.|+....+.+..++.....|...+.+|.+ .+++|+++.+.++..+.+.++..++.++.|+++||+ |||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~   89 (394)
T PRK10213         12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI   89 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence            34555666665555555545555555555566654 567999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy195           93 ILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSL  172 (691)
Q Consensus        93 ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~  172 (691)
                      .+.++..++.++...+.  +.     +.+++.|++.|++.|...+...+++.|++|    +++|+++.++...+.++|.+
T Consensus        90 ~~~~~~~~~~~~~~~~~--~~-----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~----~~~~~~a~~~~~~~~~~g~~  158 (394)
T PRK10213         90 LFAVLLTLSCLLVSFAN--SF-----SLLLIGRACLGLALGGFWAMSASLTMRLVP----PRTVPKALSVIFGAVSIALV  158 (394)
T ss_pred             HHHHHHHHHHHHHHHHC--hH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHcC----HhHHHHHHHHHHHHHHHHHH
Confidence            99999988887776642  22     789999999999999999999999999887    88999999999999999999


Q ss_pred             HHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          173 ISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       173 igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      ++|.+++++.+       ..+|+..|.+.+++.++..
T Consensus       159 ig~~l~~~l~~-------~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        159 IAAPLGSFLGE-------LIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHh-------hcCHHHHHHHHHHHHHHHH
Confidence            99999999876       4689999988766554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.82  E-value=3e-17  Score=174.65  Aligned_cols=167  Identities=17%  Similarity=0.301  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      .+....++...+++...+.++.|.. ++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            3445566667777777777777764 5799999999999999999999999999999998 9999999999999888887


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      ......  .     +.++++|++.|++.+...+...++..|.+|    +++|++.+++.+...++|..++|.+++.+.+ 
T Consensus        81 ~~~~~~--~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-  148 (352)
T cd06174          81 LAFASS--L-----WLLLVGRFLLGLGGGALYPAAAALIAEWFP----PKERGRALGLFSAGFGLGALLGPLLGGLLAE-  148 (352)
T ss_pred             HHHhcc--H-----HHHHHHHHHHHcccccccHhHHHHHHHhCC----ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence            776521  2     778899999999999999999999999887    7899999999999999999999999998876 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                            ..+|+..|.+.++..++..+.
T Consensus       149 ------~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         149 ------SLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             ------HhhHHHHHHHHHHHHHHHHHH
Confidence                  456998888877665555444

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=4.9e-17  Score=178.72  Aligned_cols=173  Identities=15%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKT-----ATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVI   93 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~-----ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~i   93 (691)
                      ..|.+..+++..++..+++....+++|.|++ ++|++..+     +|.+.+++.++..++.++.|+++||+ |||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~   89 (408)
T PRK09874         12 WKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLR   89 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHH
Confidence            3556667777777888888878888999886 58888654     48888999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy195           94 LSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI  173 (691)
Q Consensus        94 g~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i  173 (691)
                      +.++..++.+++.....  .     +.++++|++.|++.+. .+...+++.+++|    +++|++..++...+.++|.++
T Consensus        90 ~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~  157 (408)
T PRK09874         90 SALGMGIVMVLMGLAQN--I-----WQFLILRALLGLLGGF-VPNANALIATQVP----RNKSGWALGTLSTGGVSGALL  157 (408)
T ss_pred             HHHHHHHHHHHHHHHhh--H-----HHHHHHHHHHHHhhhh-HHhHHHHHHHhcC----HhhhhHHHHHHHHHHHHHHHH
Confidence            98888887777665422  1     7788899999988654 5677788889877    888999999999999999999


Q ss_pred             HHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          174 STFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       174 gp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      +|.+++.+.+       ..+|+..|.+.+++.++..+..
T Consensus       158 ~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~  189 (408)
T PRK09874        158 GPLAGGLLAD-------SYGLRPVFFITASVLFLCFLVT  189 (408)
T ss_pred             HHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHH
Confidence            9999998876       4679999888777655554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.80  E-value=2.7e-16  Score=172.30  Aligned_cols=153  Identities=12%  Similarity=0.104  Sum_probs=134.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      .++|.++.+++..++...+...+.+.+|.|+. ++|.|..++|++.+.+.++..+++++.|+++||+ |||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~   80 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLI   80 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHH
Confidence            45677888888888888888888888998886 5899999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.++...+..  .     +.++++|++.|++.|...+...+...+..+    +++|++.++++..+.++|..+||.+
T Consensus        81 ~~~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~~  149 (381)
T PRK03633         81 FAAGCAGLGLMVG--F-----WSWLAWRFVAGIGCAMIWVVVESALMCSGT----SRNRGRLLAAYMMVYYLGTVLGQLL  149 (381)
T ss_pred             HHHHHHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877766432  2     778899999999999988888777788665    7789999999999999999999999


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      ++.+.+
T Consensus       150 ~~~l~~  155 (381)
T PRK03633        150 VSKVST  155 (381)
T ss_pred             Hhcccc
Confidence            988755

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.80  E-value=1.6e-16  Score=180.62  Aligned_cols=173  Identities=10%  Similarity=0.074  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV  103 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i  103 (691)
                      ..+++..+....-.-.+..-+| .+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.++.+
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~~   86 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence            3333434333333323333344 44578999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          104 LLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       104 ll~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      +++.+..  .     +.++++|+++|+|.|+..+.....+.+.++   ++++|+++++++....++|..+||.+++++.+
T Consensus        87 ~~~~a~~--~-----~~li~~r~l~G~g~~~~~~~~~~~l~~~~~---~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         87 AAAFSPT--A-----SWLIATRALLAIGAAMIVPATLAGIRATFT---EEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHcCC--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8877532  2     789999999999999988888777777663   37889999999999999999999999999987


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          184 DMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       184 ~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                             ..+||+.|++...+.++.+++....
T Consensus       157 -------~~gwr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        157 -------HFYWGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             -------cCChHHHHHHHHHHHHHHHHHHHHh
Confidence                   5789999998766555554444333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.80  E-value=6.2e-17  Score=182.21  Aligned_cols=169  Identities=9%  Similarity=0.103  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      .+++..+...+........+| .+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   83 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLL   83 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHH
Confidence            333444444444433333344 55678999999999999999999999999999999998 9999999999999888887


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      ...+.  +.     ..++++|++.|++.|...+...+++.|.+|    +++|+++.+++.....+|..+||.+++++.+ 
T Consensus        84 ~~~~~--~~-----~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-  151 (485)
T TIGR00711        84 CGVAP--NL-----ELMIIFRVIQGFGGGPLIPLSFSTLLNIYP----PEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-  151 (485)
T ss_pred             HhCcC--CH-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-
Confidence            76643  22     788999999999999999999999999887    8899999999999999999999999998876 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                            ..+|++.|++.+.+.++.+++..
T Consensus       152 ------~~~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711       152 ------NYHWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             ------CcCceehhhhhhHHHHHHHHHHH
Confidence                  57899998887665554444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.80  E-value=4.2e-16  Score=171.84  Aligned_cols=164  Identities=18%  Similarity=0.182  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.++...++..++.......++.. .+++|.+..+.+++.+.+.+...++.+++|+++||+ ||||++.++.++..+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            456666777777766655444444444 568899999999999999999999999999999998 999999999998888


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +.+++....         . .++.|+++|++.|...|...+++.|.+|    +++|+++.++.....++|.++||.++++
T Consensus        81 ~~~~~~~~~---------~-~~~~r~l~G~~~a~~~pa~~a~i~~~~~----~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         81 GCLLMLFGI---------H-PLLAYGLVGIGAAAYSPAKYGILTELLP----GEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777655431         2 3678999999999999999999999998    8999999999999999999999999999


Q ss_pred             hhccccccCCCCchhHHHHHHHHHHHHH
Q psy195          181 FRHDMQCFGQEACFPLAFGVPALLMFLA  208 (691)
Q Consensus       181 l~~~~~~~g~~~~w~~~F~i~~~l~~l~  208 (691)
                      +.+.        .|+..+.+.+...+++
T Consensus       147 l~~~--------~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        147 LADP--------HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHH--------HHHHHHHHHHHHHHHH
Confidence            8762        2666666555443333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.79  E-value=2.2e-17  Score=176.65  Aligned_cols=165  Identities=19%  Similarity=0.357  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTV  107 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~  107 (691)
                      +..++..++.....+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence            445555666666666677688889999999999999999999999999999999997 9999999999998888555544


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy195          108 TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC  187 (691)
Q Consensus       108 s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~  187 (691)
                      +  ++.     +.++++|++.|++.+...+...+++.|.+|    +++|++.+++...+.++|.+++|.+++.+.+    
T Consensus        82 ~--~~~-----~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  146 (352)
T PF07690_consen   82 A--SNF-----WLLLIARFLLGIGSGFFSPASNALIADWFP----PEERGRAFGILSAGFSLGSILGPLLGGFLIS----  146 (352)
T ss_dssp             H--CCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----TCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             h--hhH-----HHHhhhccccccccccccccccccccccch----hhhhhhccccccchhhhhhhcccchhhhhhh----
Confidence            3  222     778999999999999999999999999987    7899999999999999999999999998875    


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHH
Q psy195          188 FGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       188 ~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                         ..+|+..|++.+++.++..++
T Consensus       147 ---~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  147 ---YFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             ---HCHHCCHHHHHHHHHHHHHHH
T ss_pred             ---ccccccccccccchhhhhhhh
Confidence               467999999988877776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.79  E-value=1.9e-16  Score=178.11  Aligned_cols=147  Identities=10%  Similarity=0.080  Sum_probs=125.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy195           51 VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAV  130 (691)
Q Consensus        51 ~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gi  130 (691)
                      +++++..+.|.+.+.+.++..++.+++|+++||+ |||+++.++.++..++.++...+.....     ..+++.|++.|+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAGGGI-----ALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHHcCc-----hHHHHHHHHHHH
Confidence            6889999999999999999999999999999998 9999999999888888776654322112     678899999999


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC-CchhHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE-ACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~-~~w~~~F~i~~~l~~l~~  209 (691)
                      +.|...+....+++|++|    +++|+++.++...+.++|.++++.+++++.+       . .+|+..|++.++..++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f~i~~~~~~~~~  212 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAP----PKERSRLLGMSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIFYVFGIVGCAWS  212 (465)
T ss_pred             hcccchhhHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeehhhhhHHHHHHH
Confidence            999999999999999998    8999999999999999999999999998876       4 389999998777655554


Q ss_pred             HHHHh
Q psy195          210 IVFII  214 (691)
Q Consensus       210 l~~~~  214 (691)
                      ++++.
T Consensus       213 ~~~~~  217 (465)
T TIGR00894       213 LLWFV  217 (465)
T ss_pred             HHHHH
Confidence            44433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.79  E-value=3.7e-16  Score=174.45  Aligned_cols=150  Identities=9%  Similarity=0.035  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      .....++.+ .+++|++..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++...+...       
T Consensus        41 ~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~-------  111 (434)
T PRK11663         41 SFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGFSSSL-------  111 (434)
T ss_pred             hHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHHHhHH-------
Confidence            333445555 456999999999999999999999999999999998 99999999999888888877665321       


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      +.+++.|++.|++.|...+...+++++++|    +++|++.+++++.+.++|..+++.+.+++.+       ..+|+..|
T Consensus       112 ~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~----~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~f  180 (434)
T PRK11663        112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYS----RTERGGWWAIWNTAHNVGGALIPLVVGAIAL-------HYGWRYGM  180 (434)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cccHHHHH
Confidence            677888999999999988999999999997    8899999999999999999999999998876       46799999


Q ss_pred             HHHHHHHHHH
Q psy195          199 GVPALLMFLA  208 (691)
Q Consensus       199 ~i~~~l~~l~  208 (691)
                      .+.+++.++.
T Consensus       181 ~~~~i~~~~~  190 (434)
T PRK11663        181 MIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHH
Confidence            8877654443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.79  E-value=2.4e-16  Score=172.09  Aligned_cols=172  Identities=14%  Similarity=0.162  Sum_probs=139.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      .+++.+..+++..+...+..+......+ .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~   86 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVL   86 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            3456666666666666666665544444 56778999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.++......  +     +.++++|++.|++.+...+...+++.|++|    +++|+++.++...+.++|..+++.+
T Consensus        87 ~~~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~l  155 (405)
T TIGR00891        87 FSAGTLACGFAPG--Y-----ITMFIARLVIGIGMGGEYGSSAAYVIESWP----KHLRNKASGLLISGYAVGAVVAAQV  155 (405)
T ss_pred             HHHHHHHHHHhcc--H-----HHHHHHHHHHHhhhhhhhHHHHHHHHHhCC----hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888877766422  2     778899999999999999999999999887    8899999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFL  207 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l  207 (691)
                      .+.+.+.   .  ..+|+..|.+.++..++
T Consensus       156 ~~~l~~~---~--~~~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       156 YSLVVPV---W--GDGWRALFFISILPIIF  180 (405)
T ss_pred             HHHHHHh---c--CccHHHHHHHHHHHHHH
Confidence            8887652   0  12499888875544333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.79  E-value=3.3e-16  Score=173.59  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.+....+..+...+..+.. ..+..++.+++|+++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~   95 (426)
T PRK12307         18 NALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence            34444444444444554443 3344556788999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +.++...+...       +.++++|++.|+|.|...+...++++|.+|    +++|+++.++...+..+|.++++.+.+.
T Consensus        96 ~~~~~~~~~~~-------~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         96 GTGLSGLASGV-------IMLTLSRFIVGMGMAGEYACASTYAVESWP----KHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHhHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHhCC----HhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            88877765322       788999999999999999999999999887    8899999999999999999999988887


Q ss_pred             hhccccccCCCCchhHHHHHHHH
Q psy195          181 FRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       181 l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      +.+       ..+|+..|.+...
T Consensus       165 l~~-------~~~w~~~f~i~~~  180 (426)
T PRK12307        165 FAE-------AYGWRAAFFVGLL  180 (426)
T ss_pred             Hcc-------cCCHHHHHHHHHH
Confidence            766       4689999887543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.78  E-value=3.4e-16  Score=168.58  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT  121 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l  121 (691)
                      +.+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+.+...       +.+
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~   94 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIADSL-------AAL   94 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHHHH-------HHH
Confidence            4456677789999999999999999999999999999999998 99999999999999998887775322       778


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHH
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVP  201 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~  201 (691)
                      +++|++.|++.|...+.......+++|     ++|+++.++...+.++|.++++.+.+.+.+       ..+||..|.+.
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~f~~~  162 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-----DKRGLASGIIIGGYGLGSFILSPLITSVIN-------LEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-----cccHHHHHHHHHhcchhHhHHHHHHHHHHh-------cccHHHHHHHH
Confidence            899999999999888777888888775     468999999999999998876666655544       46799999887


Q ss_pred             HHHHHHHHHHH
Q psy195          202 ALLMFLAIIVF  212 (691)
Q Consensus       202 ~~l~~l~~l~~  212 (691)
                      +++.++..+..
T Consensus       163 ~~~~~~~~~~~  173 (377)
T TIGR00890       163 GIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHHH
Confidence            77655554433

>KOG2532|consensus

Probab=99.78  E-value=9.3e-17  Score=179.77  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=133.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy195           51 VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAV  130 (691)
Q Consensus        51 ~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gi  130 (691)
                      +++++..+.+++.+.+.+|+.++.+++|+++||+ |-|+++.++.++..+++++.+.+...+.     +.+++.|+++|+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~~-----~~~~~~R~lqGl  140 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIGF-----YLLLVLRFLQGL  140 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhcc-----hhhHHHHHHhHH
Confidence            5789999999999999999999999999999998 9999999999999999999988753222     667999999999


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      +.|...|++..+.+.+.|    +++|+++.+..+.+..+|.+++-.+++++.+.      ..||+..|++.+++.++..+
T Consensus       141 ~~g~~~pa~~~i~~~W~P----~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW~sifY~~g~~g~i~~~  210 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAP----PNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGWPSIFYVFGIVGLIWFI  210 (466)
T ss_pred             HHhHHHhhhhceeeeECC----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCCchHHHHHHHHHHHHHH
Confidence            999999999999999998    99999999999999999999999999998873      47899999998887776666


Q ss_pred             HHHhhc
Q psy195          211 VFIIGK  216 (691)
Q Consensus       211 ~~~~~~  216 (691)
                      +++...
T Consensus       211 ~w~~~~  216 (466)
T KOG2532|consen  211 LWFLFY  216 (466)
T ss_pred             HHHHHh
Confidence            655543

>PRK03699 putative transporter; Provisional

Probab=99.78  E-value=6.8e-16  Score=169.93  Aligned_cols=175  Identities=7%  Similarity=-0.010  Sum_probs=139.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      |++|..+...+..++...........++. +.+++|+|..+.+++.+.+.++..++.+++|+++||+ ||||++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            45566776666666655554444444554 5578999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ..++.++...+..  .     ..++++|++.|++.|...+...+++.|.+|    +++|+...+..+...++|+.++|.+
T Consensus        82 ~~i~~~l~~~~~~--~-----~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~  150 (394)
T PRK03699         82 MILAVAGLMFSHS--L-----ALFSIAMFVLGVVSGITMSIGTFLITHVYE----GKQRGSRLLFTDSFFSMAGMIFPII  150 (394)
T ss_pred             HHHHHHHHHHcch--H-----HHHHHHHHHHHHhhHhhccchhHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887776422  1     678899999999999988888999999887    6789999998888888999999988


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      .+.+...      ..+||..|.+.+++.++.+++
T Consensus       151 ~~~l~~~------~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        151 AAYLLAR------SIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHhc------cccHHHHHHHHHHHHHHHHHH
Confidence            8876542      468999998877655544433

>TIGR00897 2A0118 polyol permease family

Probab=99.78  E-value=2.5e-15  Score=165.95  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=128.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      +.||.+....+..++...+.+...++++.++ +++|++..++|++.+.+.++..++.+++|+++||+ ||||++.++.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4678888888888887788777777888888 56899999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHH-HHH
Q psy195           98 YLGGNVLLTVTA--IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGS-LIS  174 (691)
Q Consensus        98 ~~ig~ill~~s~--~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~-~ig  174 (691)
                      ..++.+++....  .++.     ..+++.|++.|+|.+...+...+.+.+.+|    +++|+++.++.+.+.++|. .++
T Consensus        88 ~~~~~~~~~~~~~~~~~~-----~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        88 WCVGHAAFIVFGLGHANY-----PLILLFYGIRGLGYPLFAYSFLVWVVYNTK----QDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHhccCccH-----HHHHHHHHHHHcchHHHHhHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            888766543211  1112     667789999999988877777788888776    8899999999999999996 578


Q ss_pred             HHHHHHhhc
Q psy195          175 TFITPIFRH  183 (691)
Q Consensus       175 p~i~~~l~~  183 (691)
                      |.+++++.+
T Consensus       159 ~~~~~~l~~  167 (402)
T TIGR00897       159 SYYSSYAIP  167 (402)
T ss_pred             HHHHHhccc
Confidence            988887765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.78  E-value=3.1e-15  Score=164.21  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      ...+..+....+++...+.+|.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            33444445556665555556554 467999999999999999999999999999999998 9999999999888888877


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      +..+..  .     ..++++|++.|++.+...+...+++.|.+|    +++|++..++.+...++|..++|.+++.+.+ 
T Consensus        85 ~~~~~~--~-----~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~-  152 (392)
T PRK10473         85 CSLAET--S-----SLFLAGRFLQGIGAGCCYVVAFAILRDTLD----DRRRAKVLSLLNGITCIIPVLAPVLGHLIML-  152 (392)
T ss_pred             HHHhCc--H-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            765422  1     667889999999999988889999999887    8899999999999999999999999888765 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                            ..+|+..|.+.+++.++..++
T Consensus       153 ------~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        153 ------KFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             ------CcChHHHHHHHHHHHHHHHHH
Confidence                  467998888877655554443

>TIGR00898 2A0119 cation transport protein

Probab=99.78  E-value=1.9e-16  Score=179.84  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             HHHhcCCC---HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q psy195           48 MHLVLLYD---EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVG  124 (691)
Q Consensus        48 l~~~lg~s---~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~  124 (691)
                      +.+++|++   ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++.  ++     +.++++
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--~~-----~~~~~~  186 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--NY-----TVFLVF  186 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--cH-----HHHHHH
Confidence            45678998   89999999999999999999999999997 999999999988888887776652  22     788999


Q ss_pred             HHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHH
Q psy195          125 LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       125 ~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      |++.|++.|...+...++++|.+|    +++|+...++...+..+|.++++.++..+.+          ||..|.+.++.
T Consensus       187 r~l~G~~~~~~~~~~~~~~~e~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----------wr~~~~~~~i~  252 (505)
T TIGR00898       187 RLLVGMGIGGIWVQAVVLNTEFLP----KKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----------WRWLQLAVSLP  252 (505)
T ss_pred             HHHHHhhccchHHHHHHHhheecC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHH
Confidence            999999999999999999999887    8889999999988999999999888765532          99888887765


Q ss_pred             HHHHHHH
Q psy195          205 MFLAIIV  211 (691)
Q Consensus       205 ~~l~~l~  211 (691)
                      .++..+.
T Consensus       253 ~~~~~~~  259 (505)
T TIGR00898       253 TFLFFLL  259 (505)
T ss_pred             HHHHHHH
Confidence            5544443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.78  E-value=2.6e-15  Score=166.69  Aligned_cols=145  Identities=11%  Similarity=0.091  Sum_probs=124.9

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q psy195           48 MHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLL  127 (691)
Q Consensus        48 l~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l  127 (691)
                      +.+++|.+..++++..+++.++..++.++.|+++||+ |||+++.++.+++.++.++...+..  .     ..++++|++
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~--~-----~~l~~~r~l  113 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTTS--M-----TQFLIARFI  113 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHH
Confidence            4568999999999999999999999999999999998 9999999999988888887776532  2     788999999


Q ss_pred             HHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHH
Q psy195          128 IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFL  207 (691)
Q Consensus       128 ~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l  207 (691)
                      +|++.+...+...++..|.+|    ++++++.+++...+.++|..+||.+++.+.+       ..+|+..|.+.++..++
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~~gw~~~f~~~~~~~~i  182 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFG----QTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------FVHWKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHH
Confidence            999998777777788889887    7889999999999999999999999988876       46899999887776555


Q ss_pred             HHHH
Q psy195          208 AIIV  211 (691)
Q Consensus       208 ~~l~  211 (691)
                      +.+.
T Consensus       183 ~~~~  186 (413)
T PRK15403        183 AFVG  186 (413)
T ss_pred             HHHH
Confidence            5544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.77  E-value=2.1e-15  Score=165.39  Aligned_cols=158  Identities=8%  Similarity=-0.026  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH----HHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV----ILSIVY   98 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~----ig~il~   98 (691)
                      .+.+.+..++...++....+++|.|++ ++|+|..+.|++.+.+.+...+++++.|.++||+ ||++...    ++..+.
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            344445555666666677788999995 5899999999999999999999999999999998 9854332    222111


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      .+  .+...++.  .     +.+++.|++.+.+.+...|...++..+      ..++|++.++......++|.+++|.++
T Consensus        84 ~~--~~~~~~~~--~-----~~l~~~~~l~~~~~~~~~p~~~al~~~------~~~~~~~~~g~~~~~~slG~~~g~~l~  148 (382)
T TIGR00902        84 AA--AFSAGAHN--A-----WLLFIAIGLFALFFSAGMPIGDALANT------WQKQFGLDYGKVRLIGSAAFIIGSALF  148 (382)
T ss_pred             HH--HHHHhhhh--H-----HHHHHHHHHHHHHHccchhHHHHHHHH------HHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            11  11112211  1     778888999998888877877776544      246788899999999999999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHH
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      +.+.+       ..||+..|.+..++
T Consensus       149 g~l~~-------~~g~~~~f~~~~~~  167 (382)
T TIGR00902       149 GGLIG-------MFDEQNILAILTAG  167 (382)
T ss_pred             HHHHH-------HcChhHHHHHHHHH
Confidence            99877       46899888876554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.77  E-value=8.4e-16  Score=168.49  Aligned_cols=172  Identities=11%  Similarity=0.121  Sum_probs=143.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++.++.+.+..+....+.+...+.+|. +.+++|++..+.|++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            455666777777776776666666665 4568999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++...+..  .     +.++++|++.|++.|...+...+++.|.+|    +++|++.++....+..+|..++|.+++
T Consensus        80 ~~~~l~~~~~~--~-----~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~g~~l~~  148 (382)
T PRK10091         80 IGNAMFTLSSS--Y-----LMLAIGRLVSGFPHGAFFGVGAIVLSKIIK----PGKVTAAVAGMVSGMTVANLLGIPLGT  148 (382)
T ss_pred             HHHHHHHHhCc--H-----HHHHHHHHHHHhhhHHHHHHHHHHHHHhCC----hHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence            88888776532  2     788999999999999988888888999876    778999999999999999999999988


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      ++.+       ..+||+.|.+.+++.++..+.
T Consensus       149 ~l~~-------~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        149 YLSQ-------EFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHhh-------hccHHHHHHHHHHHHHHHHHH
Confidence            8866       467999999877765544443

>TIGR00895 2A0115 benzoate transport

Probab=99.77  E-value=5.9e-16  Score=168.25  Aligned_cols=150  Identities=15%  Similarity=0.149  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT  121 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l  121 (691)
                      .....++.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.++.....  +.     +.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~  108 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVFTLLCALAT--NV-----TQL  108 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHcc--ch-----HHH
Confidence            3445556678999999999999999999999999999999998 999999999888888777766542  22     678


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHH
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVP  201 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~  201 (691)
                      ++++++.|++.|...+...++++|.+|    +++|++..++...+.++|..+++.+.+++.+       ..+|+..|.+.
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~~~~~  177 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAP----KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP-------VFGWRSLFYVG  177 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcC----HHhhchhHhhHhhHHHHHHHHHHHHHHHHhh-------cccceeehhhh
Confidence            889999999999999999999999887    8899999999999999999999999998876       46799888877


Q ss_pred             HHHHHHHHH
Q psy195          202 ALLMFLAII  210 (691)
Q Consensus       202 ~~l~~l~~l  210 (691)
                      +++.++..+
T Consensus       178 ~~~~~~~~~  186 (398)
T TIGR00895       178 GIAPLLLLL  186 (398)
T ss_pred             hhHHHHHHH
Confidence            544444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.77  E-value=1.3e-16  Score=179.74  Aligned_cols=154  Identities=12%  Similarity=-0.040  Sum_probs=123.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh---cCCCCCchhHHH
Q psy195           45 SLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA---IDPLNIPKRTFT  121 (691)
Q Consensus        45 ~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~---~~~~~~~~~~~l  121 (691)
                      ...+.+++|++..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++.+...   .++.     ..+
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l  125 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGSGSVSL-----GLM  125 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhcccchH-----HHH
Confidence            4456788999999999999999999999999999999998 999999888887777666555421   1112     788


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHH
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVP  201 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~  201 (691)
                      ++.|++.|++.|...|....+++|++|    +++|+++++++..+.++|.++++.+..++....  +  ..+|+..|.+.
T Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~----~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~--~--~~~~~~~f~~~  197 (467)
T PRK09556        126 IALWALSGFFQSTGGPCSYSTITRWTP----RRKRGRFLGFWNISHNLGGAGAGGVALWGANYF--F--DGHVIGMFIFP  197 (467)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHcC----ccceeeeEEeeecccchhhhHHHHHHHHHHHhh--c--cCcchhHHHHH
Confidence            999999999999999999999999998    888999999999999999999988877654410  0  12588888776


Q ss_pred             HHHHHHHHHHH
Q psy195          202 ALLMFLAIIVF  212 (691)
Q Consensus       202 ~~l~~l~~l~~  212 (691)
                      +++.++..++.
T Consensus       198 g~~~~~~~i~~  208 (467)
T PRK09556        198 SIIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHHHH
Confidence            66554443333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.77  E-value=2.4e-15  Score=163.60  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q psy195           38 YGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPK  117 (691)
Q Consensus        38 y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~  117 (691)
                      ....+.+|.+.+ ++|++..+++++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.....  .    
T Consensus         8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~--~----   79 (377)
T PRK11102          8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQT--I----   79 (377)
T ss_pred             HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHcc--H----
Confidence            344567777764 6899999999999999999999999999999998 9999999999988888887766532  2    


Q ss_pred             hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHH
Q psy195          118 RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLA  197 (691)
Q Consensus       118 ~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~  197 (691)
                       +.++++|++.|++.+...+...+++.|.+|    +++|++.+++.+...++|..++|.+++.+.+       ..+|+..
T Consensus        80 -~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~  147 (377)
T PRK11102         80 -DQLIYMRFLHGLAAAAASVVINALMRDMFP----KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-------WFSWHAI  147 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcChHHH
Confidence             678899999999999999999999999887    8899999999999999999999999998876       4679999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy195          198 FGVPALLMFLAIIVF  212 (691)
Q Consensus       198 F~i~~~l~~l~~l~~  212 (691)
                      |.+.+++.++..++.
T Consensus       148 ~~~~~~~~~~~~~~~  162 (377)
T PRK11102        148 FWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887776655554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=1.1e-15  Score=165.72  Aligned_cols=167  Identities=13%  Similarity=0.048  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHH-HHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVI-LSIVYLGGNVLLT  106 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~i-g~il~~ig~ill~  106 (691)
                      +..++..++.....+.++.|+++++|.+..+.|++.+.+.+...+..++.|+++||+ ||||.+++ +.++..++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            445666777778889999999999999999999999999999999999999999998 99987665 4444445555555


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          107 VTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEK--FFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       107 ~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~--~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      .+..  +     +.+++.|++.+.+.+...|...++..|..|    +++|++  ..++.....++|..+||.+++++.+ 
T Consensus        83 ~~~~--~-----~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-  150 (375)
T TIGR00899        83 WNRN--Y-----FLLLVLGVLLSSFASTANPQLFALAREHAD----RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-  150 (375)
T ss_pred             hcch--H-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHhh----hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-
Confidence            4321  1     667778888887777777777777777654    444443  3577777889999999999998876 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                            ..+|+..|.+.++..++.+++.+
T Consensus       151 ------~~~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899       151 ------GFGFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             ------hcccHHHHHHHHHHHHHHHHHHH
Confidence                  46799999987776555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.77  E-value=3.6e-16  Score=175.84  Aligned_cols=150  Identities=8%  Similarity=-0.030  Sum_probs=121.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH-HH
Q psy195           46 LYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTL-VG  124 (691)
Q Consensus        46 ~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~-i~  124 (691)
                      ..+.+++|++..+++++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++.+..  .     +.++ ..
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~-----~~l~~~~  114 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN--V-----IELYLTA  114 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh--H-----HHHHHHH
Confidence            345578999999999999999999999999999999998 9999999998888888877766422  1     4444 35


Q ss_pred             HHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHH
Q psy195          125 LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       125 ~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      |++.|++.|...+...+++.++++     ++|+++.++.+.+.++|..++|.+.+.+.+       ..+||.+|++.+++
T Consensus       115 ~~l~G~~~~~~~~~~~~~~~~~~~-----~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-------~~gwr~~f~~~~~~  182 (455)
T TIGR00892       115 GFITGLGLAFNFQPSLTMLGKYFY-----RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-------SFGWRGSFLILGGL  182 (455)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHH-----hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-------HhChHHHHHHHHHH
Confidence            688899998766666677788773     679999999999999999999999998876       46899999998877


Q ss_pred             HHHHHHHHHhh
Q psy195          205 MFLAIIVFIIG  215 (691)
Q Consensus       205 ~~l~~l~~~~~  215 (691)
                      .+++.+..+..
T Consensus       183 ~~~~~v~~~~~  193 (455)
T TIGR00892       183 LLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHh
Confidence            66554444333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.77  E-value=3e-16  Score=174.11  Aligned_cols=180  Identities=11%  Similarity=0.045  Sum_probs=119.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .+.+|.+.+..++..++++...++++.|+++++|++..+.|.+.+.+.++..+++++.|+++||+ ||||++.++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            35667766777777787778889999999999999999999999999999999999999999998 99999988766555


Q ss_pred             HHHHHHHHh-hcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVT-AIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 ig~ill~~s-~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      ++...+... ..+...    .....+.++.++..|...+...+...++.+  ...++++..++..+...++|.+++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         88 VLFGPFFIYVFAPLLQ----YNILLGAIVGGIYLGFGFLAGAGAIEAYIE--RVSRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhccchhhhhhHHH--HHHhhccccchhhHHhhhHHHHHHHHHH
Confidence            443322111 000000    011222222333333222222222222221  1134567778888888899999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      +.+.+        .+|+..|++.+++.++.+++.+.
T Consensus       162 g~l~~--------~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        162 GILFN--------INPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             HHHHh--------cCchHhHHHHHHHHHHHHHHHhc
Confidence            98865        36888888877665555444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.77  E-value=2.6e-15  Score=164.27  Aligned_cols=155  Identities=14%  Similarity=0.061  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      ...+.+| .+.+++|++..+.|++.+.+.++..++.+++|+++||+ |||+++..+.+....+.+.....  +++     
T Consensus         9 ~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~--~~~-----   79 (368)
T TIGR00903         9 TFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP--FNY-----   79 (368)
T ss_pred             HHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh--ccH-----
Confidence            3334444 45678999999999999999999999999999999998 99987765544443333212211  122     


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      ..++++|++.|+|.|.. .+.....+|++|    +++|+++.++.+.+.++|.++++.+++++.+       ..+||..|
T Consensus        80 ~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~----~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr~~f  147 (368)
T TIGR00903        80 EWLLACQLLAALGQPFL-LNAFAPAASQIR----EERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQLLI  147 (368)
T ss_pred             HHHHHHHHHHHhHhHHH-HHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchHHHH
Confidence            78999999999999964 445555689887    8999999999999999999999999998876       57899999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy195          199 GVPALLMFLAIIVFII  214 (691)
Q Consensus       199 ~i~~~l~~l~~l~~~~  214 (691)
                      .+.+++.++..+++..
T Consensus       148 ~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       148 IPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8866665554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.76  E-value=1.3e-15  Score=171.05  Aligned_cols=170  Identities=12%  Similarity=0.042  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGM---RTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i---~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++...++....++..   ......++.++ |++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i  105 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHH
Confidence            33333343444444432   23344567777 99999999999999999999999999999998 999999999988888


Q ss_pred             HHHHHHHhhc--CCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy195          101 GNVLLTVTAI--DPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSL-ISTFI  177 (691)
Q Consensus       101 g~ill~~s~~--~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~-igp~i  177 (691)
                      +.+++++...  .+.     ..+++.|++.|++.|...+.....+++++|    +++|+++.++++.+.++|+. ++|.+
T Consensus       106 ~~~~~~~~~~~~~~~-----~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        106 VMLFMGFVPWATSSI-----AVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHHHHHhhhcccccH-----HHHHHHHHHHHHHHhccchHHHHHHHHhCC----hHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            8877765421  111     567888999999999988888888999887    88899999999999998864 45554


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      ...+..       ..+|+..|++.+++.++..++
T Consensus       177 ~~~~~~-------~~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        177 LLGMAW-------FNDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHH-------hccHHHHHHHHHHHHHHHHHH
Confidence            433322       247999998877665554333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.76  E-value=1.4e-15  Score=172.62  Aligned_cols=178  Identities=14%  Similarity=0.108  Sum_probs=125.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHH--HHHHHHHHHHHhHHHHHHHhHhcCchhHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKT----ATV--MFHIWTGLCYFFPLFGGIIADTYLGKFLTIVI   93 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~----ag~--i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~i   93 (691)
                      ++.+....+..+++.+-+. +..+...++.++++.+...    .+.  +.++..++..++++++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            3444455555556554443 4455666777777543321    111  24667788899999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchh---HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q psy195           94 LSIVYLGGNVLLTVTAIDPLNIPKR---TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAG  170 (691)
Q Consensus        94 g~il~~ig~ill~~s~~~~~~~~~~---~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG  170 (691)
                      +.+++.++.++.+++.  ++..-+.   ..++++|+++|+|.|+..++..++++|++|    +++|++..++...+..+|
T Consensus        93 ~~~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p----~~~Rg~~~~~~~~~~~~G  166 (490)
T PRK10642         93 TIVIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP----DRKRGFMGSWLDFGSIAG  166 (490)
T ss_pred             HHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC----CCCCcHHHHHHHHHHHHH
Confidence            9999999998887752  1100000   248899999999999999999999999998    788999999988888888


Q ss_pred             HHHHHHHHHHhhcccc--ccCCCCchhHHHHHHHHHHH
Q psy195          171 SLISTFITPIFRHDMQ--CFGQEACFPLAFGVPALLMF  206 (691)
Q Consensus       171 ~~igp~i~~~l~~~~~--~~g~~~~w~~~F~i~~~l~~  206 (691)
                      ..+|+.+...+.....  ... ..|||..|++.++..+
T Consensus       167 ~~lg~~~~~~~~~~~~~~~~~-~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        167 FVLGAGVVVLISTIVGEANFL-DWGWRIPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHHHHhcCHHHhc-CccHHHHHHHHHHHHH
Confidence            8888766554321000  000 3679999988654333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.76  E-value=1.8e-15  Score=167.98  Aligned_cols=179  Identities=8%  Similarity=0.003  Sum_probs=140.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++.++.+++..++...... ........+++++|++..+.|++.+++.++..++++++|+++||+ |||+++..+.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~   84 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWG   84 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHH
Confidence            4444444443333333332 334455578899999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++.+++...       ..++++|++.|++.|...+....+++|++|    +++|++..+++..+.++|.++++.+++
T Consensus        85 ~~~~~~~~~~~~-------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332        85 IASTATMFATGP-------ESLYLLRILVGIAEAGFLPGILLYLTFWFP----AYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHHHHhcCH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888775322       788999999999999999999999999998    889999999999999999999999998


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      ++.......+ ..+||..|.+.++..++.+++.
T Consensus       154 ~l~~~~~~~~-~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       154 YILALDGLMA-LKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHhCCCCCC-ccchhHHHHHHHHHHHHHHHHH
Confidence            8753100000 3589999998776655444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.76  E-value=3.9e-15  Score=163.92  Aligned_cols=174  Identities=10%  Similarity=0.073  Sum_probs=121.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHhHHHHHHHhHhcCchhHHHHH-HHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTG-LCYFFPLFGGIIADTYLGKFLTIVI-LSIV   97 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~lGRkk~i~i-g~il   97 (691)
                      .+..+.+++..++...+.....+.++.|+.+++|++.++.|++.+...+ +..++++++|+ +||+ ||||.+++ +.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            4445666666788888888888999999999999999999999876655 55566666666 9998 99987654 4444


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHH-HHHHHHHhhchhhhhhhhhhccCCCcchhhhH--HHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVG-LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQL--EKFFSLFYFSINAGSLIS  174 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~-~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~r--g~~~~~~~~~~nlG~~ig  174 (691)
                      ..++..+.+++...       +.+++. +++.+.+ +...|....+..|..+    ++.|  +...++.+.+.++|.++|
T Consensus        92 ~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lg~~~g  159 (393)
T PRK15011         92 GVLACTLFAWNRNY-------FVLLFVGVFLSSFG-STANPQMFALAREHAD----KTGREAVMFSSFLRAQVSLAWVIG  159 (393)
T ss_pred             HHHHHHHHHHhhHH-------HHHHHHHHHHHHHH-HhhHHHHHHHHHHHhh----hccchHHHHHHHHHHHHHHHHHHh
Confidence            44555555443211       444334 4444444 4556777777777554    3333  444578888899999999


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          175 TFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       175 p~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      |.+++++.+       ..|||..|.+.+++.++..+..+.
T Consensus       160 ~~i~~~l~~-------~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        160 PPLAYALAM-------GFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             hHHHHHHHH-------hcChHHHHHHHHHHHHHHHHHHHh
Confidence            999999876       468999998877665555444333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.76  E-value=6.4e-15  Score=164.36  Aligned_cols=170  Identities=15%  Similarity=0.217  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHH---HHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195           30 EFCERFCYYGMRTVLSLYMHLVLL---YDEKTATVMFH---IWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV  103 (691)
Q Consensus        30 ~~~~~~~~y~i~~~l~~yl~~~lg---~s~~~ag~i~~---~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i  103 (691)
                      .+++.+.+. ..+++..++.++++   .+..+.+.+.+   ...++..++++++|+++||+ ||||++.++.+++.++.+
T Consensus        31 ~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         31 NLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            344444433 45667778888874   55554444444   44445559999999999998 999999999999999888


Q ss_pred             HHHHhhcCCCCCc---hhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          104 LLTVTAIDPLNIP---KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       104 ll~~s~~~~~~~~---~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +.+++.  ++...   ....+++.|+++|+|.|+..+...++++|++|    +++|++..++.+.+.+.|.++++.+...
T Consensus       109 ~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p----~~~rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        109 VIACLP--GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV----EGRKGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             HHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC----CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877642  11100   00468899999999999999999999999887    7889999999988889998888876654


Q ss_pred             hhcccccc-CCCCchhHHHHHHHHHHHH
Q psy195          181 FRHDMQCF-GQEACFPLAFGVPALLMFL  207 (691)
Q Consensus       181 l~~~~~~~-g~~~~w~~~F~i~~~l~~l  207 (691)
                      +....... -...|||.+|.+.++..++
T Consensus       183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        183 LQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence            43200000 0035799999886665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.76  E-value=4.8e-15  Score=167.68  Aligned_cols=178  Identities=15%  Similarity=0.085  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+.......++.....++..+.+ .++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~~  114 (476)
T PLN00028         37 AFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAPA  114 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence            33333333444444444444433 356778999999999999999999999999999999998 9999999998888888


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++.+.+...       ..++++|++.|++.+... ....++++++|    +++|+++.++.....++|+.+++.+.+.+
T Consensus       115 ~~~~~~~~s~-------~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~----~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        115 VFCMSLVSSA-------TGFIAVRFFIGFSLATFV-SCQYWMSTMFN----GKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHhcCH-------HHHHHHHHHHHHHHHhhH-HHHHHHHHhcC----hhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776665322       677789999999988754 34567899897    88999999998888888888887766554


Q ss_pred             hccccccC--CCCchhHHHHHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFG--QEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       182 ~~~~~~~g--~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .......+  +..+||..|.+.+++.++..++.+
T Consensus       183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            32100000  024799999987776655444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.75  E-value=3.1e-15  Score=164.88  Aligned_cols=152  Identities=14%  Similarity=0.111  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy195           36 CYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNI  115 (691)
Q Consensus        36 ~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~  115 (691)
                      .++...+.+| .+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.++.+++..  +  
T Consensus        24 ~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~--~--   97 (393)
T PRK09705         24 LLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ--S--   97 (393)
T ss_pred             hhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc--h--
Confidence            3344445455 45678999999999999999999999999999999998 9999999999999999998887632  2  


Q ss_pred             chhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchh
Q psy195          116 PKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP  195 (691)
Q Consensus       116 ~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~  195 (691)
                         ..++++|++.|+|.|...+..+.++.+++|     ++|+++.+.+..+.++|..+|+.+++++.+.      ..+|+
T Consensus        98 ---~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~  163 (393)
T PRK09705         98 ---ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-----QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWY  163 (393)
T ss_pred             ---HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHH
Confidence               778899999999999999999999988774     5689999999999999999999999887662      23799


Q ss_pred             HHHHHHHHHHHH
Q psy195          196 LAFGVPALLMFL  207 (691)
Q Consensus       196 ~~F~i~~~l~~l  207 (691)
                      ..+.+.++..++
T Consensus       164 ~~~~~~~~~~~~  175 (393)
T PRK09705        164 QTLAWWALPAVV  175 (393)
T ss_pred             HHHHHHHHHHHH
Confidence            777654444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.75  E-value=1.8e-14  Score=158.21  Aligned_cols=170  Identities=15%  Similarity=0.138  Sum_probs=134.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .|..+......++..++.....+.+|.+ .+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~   84 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            4445555555555455544444445544 567999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++.....  +.     ..++++|++.|++.+...+....+..|.++    ++++++..++...+..+|..++|.+++
T Consensus        85 ~~~~~~~~~~--~~-----~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652         85 LGTLVALFAH--SL-----TVLIAASAIQGLGTGVGGVMARTLPRDLYE----GTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHc--cH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766542  22     778899999999998888888888888776    778899999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      .+.+       ..+|+..|.+.++..++..
T Consensus       154 ~l~~-------~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        154 LLTT-------LFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHh-------ccChHHHHHHHHHHHHHHH
Confidence            8876       4679999988765544433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.74  E-value=8.1e-15  Score=158.72  Aligned_cols=181  Identities=10%  Similarity=0.103  Sum_probs=157.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH
Q psy195           17 PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI   96 (691)
Q Consensus        17 ~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i   96 (691)
                      +..+..++.+.+..|+....-+.....+|.- .+++|.|...+|+.++.|..+..++.|+...++||+ .||++++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            3446666777777777767767666666655 467999999999999999999999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        97 l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +++++.++.+++.  ++     ..+.++|++.|+..|.+.+...+..++..|    +++|+++.+....+..++..+|..
T Consensus        87 lFi~~n~l~alAp--~f-----~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp----p~~~~~Aiaiv~~G~tlA~v~GvP  155 (394)
T COG2814          87 LFIVSNLLSALAP--SF-----AVLLLARALAGLAHGVFWSIAAALAARLVP----PGKRGRALALVFTGLTLATVLGVP  155 (394)
T ss_pred             HHHHHHHHHHHhc--cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ccchhhHHHHHHHHHHHHHHHhcc
Confidence            9999999999873  23     899999999999999999999999999887    999999999999999999999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      ++.++.+       ..|||..|.+.+++.++.++..+...|
T Consensus       156 LGt~ig~-------~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         156 LGTFLGQ-------LFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999987       578999999988877777766666555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.74  E-value=3.2e-15  Score=164.55  Aligned_cols=177  Identities=11%  Similarity=0.053  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+|.+....++...++....++++.|+++++|++..+.|++.+++.++..+++++.|+++||+ ||||.+..+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567777778888888888889999999999999999999999999999999999999999998 999999887666555


Q ss_pred             HHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      +...+.... .+.........+.+++++.+++.+...+....+..|.      .++++..++......++|.++||.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        81 LFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV------SRNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh------hhhcccccchhhhhcccHHHHHHHHHh
Confidence            443322110 0000000003345667788888888788877776662      123345667777888999999999998


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+.+        .+|+..|++.+++.++..++.
T Consensus       155 ~l~~--------~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       155 ILFS--------IDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             hhhc--------cCchHHHHHHHHHHHHHHHHH
Confidence            7754        479999988776655554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.73  E-value=1.1e-21  Score=219.12  Aligned_cols=160  Identities=18%  Similarity=0.236  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcC-CCCCchhHHHHHHHHHHHHHhhch
Q psy195           57 KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAID-PLNIPKRTFTLVGLLLIAVGTGGI  135 (691)
Q Consensus        57 ~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~-~~~~~~~~~l~i~~~l~gig~G~~  135 (691)
                      ...+++.+...++..++.+++|+++||+ |||+++.++.++..+|.++..++... +.     ..+.++|++.|+|.|+.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSYNNF-----WMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccccccc-----ccccccccccccccccc
Confidence            4578899999999999999999999998 99999999999999999888776411 22     78899999999999999


Q ss_pred             hhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHH--HHHHHHH
Q psy195          136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMF--LAIIVFI  213 (691)
Q Consensus       136 ~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~--l~~l~~~  213 (691)
                      .+..+.++.|..|    ++.|+....+.+.+..+|.+++..++..+...    ..+.+||..+.+..+..+  +....++
T Consensus       120 ~~~~~~~~~E~~~----~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~Wr~~~~~~~~~~l~~~~~~~~~  191 (451)
T PF00083_consen  120 YVVSPIYISEIAP----PKHRGFLSSLFQLFWALGILLASLIGYIVSYY----SDNWGWRILLIFGAIPSLLVLLLRFFL  191 (451)
T ss_pred             ccccccccccccc----cccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccc
Confidence            9999999999665    89999999999999999998888776554321    002459987776665432  3334556


Q ss_pred             hhcccccccCCCCCcch
Q psy195          214 IGKPMYKINKPKGNVAL  230 (691)
Q Consensus       214 ~~~~~~~~~~~~~~~~~  230 (691)
                      +++|++...+.+.+++.
T Consensus       192 pESP~wL~~~~~~~~A~  208 (451)
T PF00083_consen  192 PESPRWLLSKGRDEEAE  208 (451)
T ss_pred             ccccceecccccccccc
Confidence            77777765544444333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.73  E-value=4.8e-15  Score=184.51  Aligned_cols=154  Identities=12%  Similarity=0.113  Sum_probs=122.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDE--KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~--~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      .+.+..+++..++..++..+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            4556666666666666555555556566665566653  4568889999999999999999999998 999999998877


Q ss_pred             HHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        98 ~~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      .+++.++..+.. ..++     +.++++|++.|++.|...+...++++|.+|    +++|++++++...+.++|.++|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~-----~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         87 EVGLTLLIVLAYYLGWF-----WLAFAVTFLLGAQSAIYSPAKYGIIPELVG----KENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHhhchHHHhhhHHhcC----cccchhhhhHHHHHHHHHHHHHHH
Confidence            666655544331 1122     788999999999999999999999999887    788999999999999999999999


Q ss_pred             HHHHhhc
Q psy195          177 ITPIFRH  183 (691)
Q Consensus       177 i~~~l~~  183 (691)
                      +++++..
T Consensus       158 l~~~l~~  164 (1146)
T PRK08633        158 LFSFLFE  164 (1146)
T ss_pred             HHHHHHH
Confidence            9998765

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.73  E-value=1.6e-14  Score=163.56  Aligned_cols=165  Identities=13%  Similarity=0.109  Sum_probs=136.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      +++.+..+.+..++..+.+..... +..++.+++|++..+++++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   95 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            344555555555555555544443 44556678999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      .++.+++.+...  +     +.++++|++.|++.+...+...+++.|.+|    +++|++..++...+.++|..++|.+.
T Consensus        96 ~~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         96 SVGTLACGFAPG--Y-----WTLFIARLVIGMGMAGEYGSSATYVIESWP----KHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHhH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887776522  1     778899999999999999999999999887    88999999999999999999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHH
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      +.+.+       ..+|+..|.+..+
T Consensus       165 ~~l~~-------~~~w~~~f~~~~~  182 (496)
T PRK03893        165 SLVVP-------VWGWRALFFIGIL  182 (496)
T ss_pred             HHHhc-------cCCHHHHHHHHHH
Confidence            98876       5789998876443

>PRK11043 putative transporter; Provisional

Probab=99.72  E-value=3.6e-14  Score=156.22  Aligned_cols=160  Identities=11%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy195           34 RFCYYGMRTVLSLY--MHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAID  111 (691)
Q Consensus        34 ~~~~y~i~~~l~~y--l~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~  111 (691)
                      ..++.+...++|.+  +.+++|.+..+++++.+++.++..++.+++|+++||+ |||+++.++.++..++.++.....  
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--   92 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE--   92 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc--
Confidence            33444333444433  5678999999999999999999999999999999998 999999999888888777766542  


Q ss_pred             CCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q psy195          112 PLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE  191 (691)
Q Consensus       112 ~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~  191 (691)
                      +.     +.++++|++.|++.+...+...+++.|.+|    ++++++.++......++|..++|.+++++.+       .
T Consensus        93 ~~-----~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~  156 (401)
T PRK11043         93 SA-----AQLLVLRFVQAVGVCSAAVIWQALVIDRYP----AQKANRVFATIMPLVALSPALAPLLGAWLLN-------H  156 (401)
T ss_pred             CH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c
Confidence            12     778889999999988888888889999887    7778888888888889999999999998876       4


Q ss_pred             CchhHHHHHHHHHHHHHHHHH
Q psy195          192 ACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       192 ~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+|+..|.+.++..++..+..
T Consensus       157 ~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        157 FGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             CChHHHHHHHHHHHHHHHHHH
Confidence            689998888776655544433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.72  E-value=3.4e-14  Score=161.64  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+..++...++.+++......-++-++ .++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++..+
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            4556666677777777664444444444 45678999999999999999999999999999998 999999999887766


Q ss_pred             HHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ..+++++.. .....   .+.+++..++.|++.+...|+..+++.+.+|    +++...+.++.....|+..++||.++|
T Consensus        88 ~~~~L~~l~~~~~~~---~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~----~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   88 VALLLAVLAFFGLLS---PWLLLILTFLLGIGSAFFNPAWQAIIPELVP----KEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHhCcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----HhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            555554432 11111   1778888899999999999999999999887    888999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .+..       ..|-...|.+.++..++.++.+.
T Consensus       161 ~Lva-------~~G~~~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  161 ILVA-------FFGAAAAFLINALSFLISILALL  187 (524)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876       34556777777665555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.71  E-value=2.2e-14  Score=160.15  Aligned_cols=178  Identities=11%  Similarity=0.093  Sum_probs=121.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHH-----HHHHHhHHHHHHHhHhcCchhHH
Q psy195           17 PKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMF-HIWT-----GLCYFFPLFGGIIADTYLGKFLT   90 (691)
Q Consensus        17 ~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~-~~~~-----i~~~i~~l~~G~LaDr~lGRkk~   90 (691)
                      ++.++.....++..++..+-... .......+.++++.++.+.+... +...     ++..+++++.|+++||+ ||||.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~   88 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKG   88 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHH
Confidence            33444444444544444444433 34455577788998877654332 2222     12236789999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCch---hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195           91 IVILSIVYLGGNVLLTVTAIDPLNIPK---RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus        91 i~ig~il~~ig~ill~~s~~~~~~~~~---~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      +.++.+++.++.++.+++..  ...-.   ...++++|++.|++.|...++...+++|++|    +++|++..++...+.
T Consensus        89 l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p----~~~rg~~~~~~~~~~  162 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPG--YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT----PGRKGFYTSWQSASQ  162 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC----cccchHHHHHHHHHH
Confidence            99999999998888876521  10000   0246899999999999999999999999988    889999999988888


Q ss_pred             HHHHHHHHHHHHHhhcccccc-CCCCchhHHHHHHH
Q psy195          168 NAGSLISTFITPIFRHDMQCF-GQEACFPLAFGVPA  202 (691)
Q Consensus       168 nlG~~igp~i~~~l~~~~~~~-g~~~~w~~~F~i~~  202 (691)
                      ++|..+++.+++.+....... ....+||..|.+..
T Consensus       163 ~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        163 QVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            888888887776653210000 00467999998744

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.71  E-value=2.2e-15  Score=162.44  Aligned_cols=150  Identities=12%  Similarity=0.065  Sum_probs=127.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q psy195           44 LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV  123 (691)
Q Consensus        44 l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i  123 (691)
                      ...++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++...+..  .     +.+++
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~   88 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS--L-----WVMAA   88 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh--H-----HHHHH
Confidence            44567788999999999999999999999999999999998 9999999999998888888776532  2     78889


Q ss_pred             HHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccCCCCchhHHHHHHH
Q psy195          124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST-FITPIFRHDMQCFGQEACFPLAFGVPA  202 (691)
Q Consensus       124 ~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp-~i~~~l~~~~~~~g~~~~w~~~F~i~~  202 (691)
                      +|++.|++.|...+...++++|.+|    +++|++..++...+.++|..+++ .+++.+..       ..+|+..|.+.+
T Consensus        89 ~~~~~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~  157 (379)
T TIGR00881        89 LWALNGIFQGMGWPPCGRTVTKWFS----RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYSWHWVFIVPG  157 (379)
T ss_pred             HHHHHHhhccccCCchHHHHHHhcC----HhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCCchhHHHHHH
Confidence            9999999999999999999999887    78899999999999999999999 45555544       467998888777


Q ss_pred             HHHHHHHHHH
Q psy195          203 LLMFLAIIVF  212 (691)
Q Consensus       203 ~l~~l~~l~~  212 (691)
                      ++.++..++.
T Consensus       158 ~~~~~~~~~~  167 (379)
T TIGR00881       158 IIAIIVSLIC  167 (379)
T ss_pred             HHHHHHHHHH
Confidence            6555444333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.71  E-value=6.7e-15  Score=164.51  Aligned_cols=154  Identities=12%  Similarity=0.011  Sum_probs=122.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q psy195           44 LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV  123 (691)
Q Consensus        44 l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i  123 (691)
                      ...++++ .|++..+.+++.+++.++..++.+++|+++||+ |||+.+.++.++..++.++......  .. .....+.+
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~  123 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW--AT-SSIAIMFV  123 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc--cc-chHHHHHH
Confidence            4456665 599999999999999999999999999999997 9999999998888887776554311  00 00156678


Q ss_pred             HHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q psy195          124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       124 ~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      .|++.|++.|...+.....+.|++|    +++|++++++++.+.++|+.+++.+.+.....      ..+||..|++.++
T Consensus       124 ~~~l~g~~~g~~~~~~~~~i~~~~~----~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~------~~~w~~~f~~~~~  193 (438)
T TIGR00712       124 LLFLNGWFQGMGWPPCGRTMVHWWS----QSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW------FNDWHAALYFPAI  193 (438)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHhcC----cccchhHHHHHHHHHHhHhHHHHHHHHHHHHH------hhhhHHHHHHHHH
Confidence            8999999999988888999999887    88899999999999999999988877654331      3579999998777


Q ss_pred             HHHHHHHHH
Q psy195          204 LMFLAIIVF  212 (691)
Q Consensus       204 l~~l~~l~~  212 (691)
                      +.++..++.
T Consensus       194 ~~~i~~~~~  202 (438)
T TIGR00712       194 CAIIVALFA  202 (438)
T ss_pred             HHHHHHHHH
Confidence            665544333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.71  E-value=2.3e-14  Score=157.08  Aligned_cols=155  Identities=10%  Similarity=0.020  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchh----HHHHHHHHHHHHHHHHH
Q psy195           30 EFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKF----LTIVILSIVYLGGNVLL  105 (691)
Q Consensus        30 ~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRk----k~i~ig~il~~ig~ill  105 (691)
                      .++...++....+++|.|++ ++|.|..++|++.+++.++..++.+++|.++||+ ||+    +.+.++.++..   +++
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~---~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA---VAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH---HHH
Confidence            34444566677788999995 5899999999999999999999999999999998 984    33322222111   111


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy195          106 TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDM  185 (691)
Q Consensus       106 ~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~  185 (691)
                      ... .++.     +.+++.|++.|++.+...|...++..++      .++|++.++..+...++|.++||.+++++.+  
T Consensus        88 ~~~-~~~~-----~~l~i~~~l~g~~~~~~~~~~~a~~~~~------~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~--  153 (382)
T PRK11128         88 WFG-AHSF-----WLLFVAIGLFNLFFSPLVPLTDALANTW------QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS--  153 (382)
T ss_pred             HHh-cccH-----HHHHHHHHHHHHHHcccccHHHHHHHHH------HhhccCCcchHHHHHHHHHHHHHHHHHHHHH--
Confidence            111 1112     6777899999999988888877776663      3456777888888889999999999999887  


Q ss_pred             cccCCCCchhHHHHHHHHHHHHH
Q psy195          186 QCFGQEACFPLAFGVPALLMFLA  208 (691)
Q Consensus       186 ~~~g~~~~w~~~F~i~~~l~~l~  208 (691)
                           ..+|+..|++.++..++.
T Consensus       154 -----~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        154 -----WFGEQAILWILTAGVASM  171 (382)
T ss_pred             -----HcChhHHHHHHHHHHHHH
Confidence                 468999888766544433

>PRK09952 shikimate transporter; Provisional

Probab=99.71  E-value=2.6e-14  Score=159.98  Aligned_cols=179  Identities=8%  Similarity=-0.009  Sum_probs=122.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHH-----HHHHHHHHHhHHHHHHHhHhcCchhHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVL--LYDEKTATVMF-----HIWTGLCYFFPLFGGIIADTYLGKFLTI   91 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~l--g~s~~~ag~i~-----~~~~i~~~i~~l~~G~LaDr~lGRkk~i   91 (691)
                      ++|.++..++..+++.+-........+.+..+++  +.++.. +.+.     ++..++..++.++.|+++||+ |||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l   97 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence            3444555555555555444433333444555554  666663 4443     233455668888899999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCchh---HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHH
Q psy195           92 VILSIVYLGGNVLLTVTAIDPLNIPKR---TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSIN  168 (691)
Q Consensus        92 ~ig~il~~ig~ill~~s~~~~~~~~~~---~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~n  168 (691)
                      .++.+++.++.++.+++..  +.....   ..++++|+++|++.|+..+....+++|++|    +++|+...+....+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p----~~~rg~~~~~~~~g~~  171 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPS--FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP----KNKKAFYSSGVQVGYG  171 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC----CCCCcHHHHHHHHHHH
Confidence            9999999998888777522  100000   258889999999999999999999999887    7889999999888888


Q ss_pred             HHHHHHHHHHHHhhccccccC-CCCchhHHHHHHHHHH
Q psy195          169 AGSLISTFITPIFRHDMQCFG-QEACFPLAFGVPALLM  205 (691)
Q Consensus       169 lG~~igp~i~~~l~~~~~~~g-~~~~w~~~F~i~~~l~  205 (691)
                      +|.+++..+...+........ ...+||..|.+.++..
T Consensus       172 ~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~  209 (438)
T PRK09952        172 VGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV  209 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence            888888776665432100000 0357999998876543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.71  E-value=4.5e-15  Score=160.54  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .++..++..++.....+...+.+|.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            345556666666666666777777788899999999999999999999999999999999998 9999999999999998


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++...+.. +.     +.++++|++.|++.+.. +...++++|.+|    +++|++..++.....++|..+++.+++.+
T Consensus        81 ~~~~~~~~~-~~-----~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        81 CLWAGLAVQ-SY-----SVLLLLRLFIGIAGGSF-ASCMPWISFFFP----KKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHhh-hH-----HHHHHHHHHHHHhchhh-HhHHHHHHHhcC----HhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            887776530 12     77889999999996654 556788999887    88899999999888888888888777655


Q ss_pred             hcccc-ccC--CCCchhHHHHH
Q psy195          182 RHDMQ-CFG--QEACFPLAFGV  200 (691)
Q Consensus       182 ~~~~~-~~g--~~~~w~~~F~i  200 (691)
                      ..... ..+  ...+|++.|++
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHhcccccccccccchhHH
Confidence            43100 000  02479988843

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.70  E-value=1.6e-14  Score=180.05  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH--HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhc
Q psy195           57 KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI--VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG  134 (691)
Q Consensus        57 ~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i--l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~  134 (691)
                      ...+++.+++.+...++.+++|+++||+ |||+++.+...  +.+.+..+.... .+++     +.++++|+++|++.+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-~~s~-----~~l~~~~~l~gi~~a~  124 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-LNSV-----PLLFAALFLMGIHSAL  124 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-HhhH-----HHHHHHHHHHHHHHHh
Confidence            4567788899999999999999999998 99998644222  111222122111 1222     7899999999999999


Q ss_pred             hhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q psy195          135 IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       135 ~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      ..|...+++.++++    +++|+++.++..++.++|.++||.+++++..       ..+|+..|.+..+
T Consensus       125 ~~p~~~a~l~~~~~----~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-------~~~~~~~~~~~~~  182 (1140)
T PRK06814        125 FGPIKYSILPDHLN----KDELLGANALVEAGTFIAILLGTIIGGLATI-------SGNFVILVALLMG  182 (1140)
T ss_pred             hchHHHHhhHhhcC----ccccchhhHHHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHH
Confidence            99999999999998    8899999999999999999999999999877       4678888844333

>PRK10133 L-fucose transporter; Provisional

Probab=99.69  E-value=9.5e-14  Score=155.51  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=119.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ...+..+.+..+...+........+|. +++++|.+..+.|++.+.+.++..++.++.|+++||+ ||||++.++.+++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            334444444444445555444444554 4889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      ++.+++.... .+++     ..++++|+++|+|.|...+..+++++|..|    +++|....+..+....+|..+|+.++
T Consensus       103 ~~~~l~~~~~~a~~~-----~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~----~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        103 LGAALFWPAAEIMNY-----TLFLVGLFIIAAGLGCLETAANPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHhCC----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987753221 2222     788999999999999999999999998654    56666678888888899999999887


Q ss_pred             HHhh
Q psy195          179 PIFR  182 (691)
Q Consensus       179 ~~l~  182 (691)
                      +.+.
T Consensus       174 ~~l~  177 (438)
T PRK10133        174 QSLI  177 (438)
T ss_pred             HHHH
Confidence            6543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.1e-14  Score=156.20  Aligned_cols=180  Identities=13%  Similarity=0.109  Sum_probs=152.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHH
Q psy195           17 PKYPKAVFFIVINEFCERFCYYGMRTV---LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVI   93 (691)
Q Consensus        17 ~~~~r~~~~l~~~~~~~~~~~y~i~~~---l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~i   93 (691)
                      +.+.|--+.++...++...+||.+.-+   ..+++.++.++|.++.|.+.+.+.+...++-.+.|.++||. +.|+.+..
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~   99 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence            334455566777777888888877655   45678888999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy195           94 LSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI  173 (691)
Q Consensus        94 g~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i  173 (691)
                      |+++..+..+++.++..  +     ..+.+..++.|..+|.-.|+....++.+|+    +++||+..++++.+-|+|+++
T Consensus       100 gLilsai~nil~Gfs~s--~-----~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs----r~eRG~~~siWn~shNiGGal  168 (448)
T COG2271         100 GLILSAIVNILFGFSPS--L-----FLFAVLWVLNGWFQGMGWPPCARTITHWFS----RKERGTWWSIWNTSHNIGGAL  168 (448)
T ss_pred             HHHHHHHHHHHHhhhhH--H-----HHHHHHHHHHHHHhcCCCcHHHHHHHHHcC----ccccCceEEEehhhhhcccch
Confidence            99999998888887642  1     778888889999999999999999999998    899999999999999999999


Q ss_pred             HHHHH--HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          174 STFIT--PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       174 gp~i~--~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      .|.+.  +++..       +.+||.+|++++++.++..++.+..
T Consensus       169 ~~~~~~la~~~~-------~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         169 APLVALLAFFAF-------HGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             HHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99988  77665       4689999999998766555444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.66  E-value=1.9e-13  Score=152.06  Aligned_cols=141  Identities=11%  Similarity=0.057  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch-hHHHHHHHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK-FLTIVILSIVYLGGNVLLT  106 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR-kk~i~ig~il~~ig~ill~  106 (691)
                      +..++...++-...+.++.|+.+++|++..+.|++.+.+.++..+++++.|.++||+ || |+++.++.++..++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889         9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence            334444445545668899999999999999999999999999999999999999997 76 6677777766666655555


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          107 VTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV----PEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       107 ~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~----~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      ....  .     +.+++.|++.+++.+...+...++..+...+    ......|.+.++      .+|.++||.+++.+.
T Consensus        88 ~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~  154 (418)
T TIGR00889        88 QVTT--P-----AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD  154 (418)
T ss_pred             HhcC--H-----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence            4321  1     5667788888887766655544432111100    011122334444      467888888888763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.65  E-value=7e-14  Score=155.38  Aligned_cols=176  Identities=17%  Similarity=0.130  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh----cCchhH-HHHHHHHHHHHHHHHHH
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADT----YLGKFL-TIVILSIVYLGGNVLLT  106 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr----~lGRkk-~i~ig~il~~ig~ill~  106 (691)
                      ...+.+..+.++++.|+++.+|+++.++|.+.++..+...+..|+.|+++||    + |||| .++++.++..++.+++.
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~-Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRW-GKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCC-CCcchhHHHhHHHHHHHHHHHH
Confidence            3344555666789999999999999999999999999999999999999998    5 8855 56677777777766665


Q ss_pred             HhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy195          107 VTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDM  185 (691)
Q Consensus       107 ~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~  185 (691)
                      ..  |....... ..+++.+++.+++.+....+..++.+|..+   ++++|++..++...+.++|..+++.+.+.+....
T Consensus        89 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~---~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~  163 (437)
T TIGR00792        89 TT--PDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL---DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYF  163 (437)
T ss_pred             hC--CCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43  22111111 455667777888888887788888888653   4688999999999988998887777655443211


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          186 QCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       186 ~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      +..+...+|+..+.+.+++.++..++..
T Consensus       164 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~  191 (437)
T TIGR00792       164 GGGDDKFGWFMFALVLALIGVVSLIICF  191 (437)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            0000135799888877766555544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.64  E-value=1.4e-12  Score=148.10  Aligned_cols=171  Identities=14%  Similarity=0.112  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc----CchhHH-HHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY----LGKFLT-IVILSIV   97 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~----lGRkk~-i~ig~il   97 (691)
                      .+.++...+......+...+.++.++.+ .|.+..+.|... ..... +++.++.|.++||+    +||||. +.++.++
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~   90 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLL   90 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence            3334444455566666667778888764 599999999863 22222 36889999999994    288886 5566555


Q ss_pred             HHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        98 ~~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      ..++...+++.. ..++     +.+.+.+++.+++.+...+...++.+|++|    +++|+++.++...+.++|.++++.
T Consensus        91 ~~~~~~~~a~~~~~~~l-----~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~----~~~rg~~~~i~~~g~~lG~llg~~  161 (491)
T PRK11010         91 LLVAIAAMGFLEPGTQL-----RWLAALAVVIAFCSASQDIVFDAWKTDVLP----AEERGAGAAISVLGYRLAMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHcCCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            555555554431 1111     567778889999999999999999999987    889999999999999999999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +..++.+.      ..|||..|++.+++.++..+.
T Consensus       162 l~~~l~~~------~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        162 LALWLADR------YLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHhc------ccCHHHHHHHHHHHHHHHHHH
Confidence            88887651      257999999877765555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.63  E-value=1e-12  Score=146.02  Aligned_cols=178  Identities=13%  Similarity=0.090  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++.+....+...+.+....+.+ ..+++++|++..++|++.+.+.++..++++++|++.||+ |||+++.++.+++.++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            4444444444454543333444 455789999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          103 VLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       103 ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      +++..+. .+++     +.++++|++.|+|.|...+..++++.+..|    +++|++..+..+...++|..+||.+++.+
T Consensus        83 ~l~~~~~~~~~~-----~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        83 FLFWPAAEIMNY-----TLFLVGLFILTAGLGFLETAANPYILVMGP----ESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHhhccH-----HHHHHHHHHHHhhHHHHHhhhhHHHHHHCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7765432 2222     778899999999999999999999999665    77889999999999999999999998876


Q ss_pred             hccc-ccc------------------CCCCchhHHHHHHHHHHHHHHHH
Q psy195          182 RHDM-QCF------------------GQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       182 ~~~~-~~~------------------g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      .... ...                  +...+||.+|.+.+++.++..++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       154 ILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4310 000                  00135999998777655544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330|consensus

Probab=99.62  E-value=5e-15  Score=160.18  Aligned_cols=181  Identities=12%  Similarity=0.153  Sum_probs=152.3

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHH
Q psy195           16 QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILS   95 (691)
Q Consensus        16 ~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~   95 (691)
                      .+...+.+..++++++.+++--|.+.. ...=.++.+|.+++..|++...+.++..+++|++|+++||| .|++++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHH
Confidence            334455666777777777777775544 33345667999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195           96 IVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus        96 il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      .++.+++++.+++...       +.+.+.|.+.|+|.+.+.|..+++++|.||    ..+|++.++++|+++++|+.+|.
T Consensus       106 ~iW~~Av~~~~fs~~F-------wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~----~~~Rs~~~~ify~~ipvGsglG~  174 (493)
T KOG1330|consen  106 FIWTLAVFASGFSNHF-------WQVLLCRGFVGIGEASYSPIAPSLIADSFP----DDKRSRVLGIFYFAIPVGSGLGY  174 (493)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHhccchhhhcccchhHhhhcCc----chhhhHHHHHhhhhcccccceeE
Confidence            9999999988887422       899999999999999999999999999998    89999999999999999999999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      .++..+.+.      +..||++|...+++.++.+++..+.
T Consensus       175 vvgs~va~~------~~~Wr~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  175 VVGSVVASL------TFWWRWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             EeeeeeccC------ccceEEEEEeehHHHHHHHHHHHhh
Confidence            988887663      3349999999888876665554443

>TIGR00896 CynX cyanate transporter

Probab=99.61  E-value=2.4e-13  Score=147.12  Aligned_cols=148  Identities=15%  Similarity=0.140  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q psy195           41 RTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTF  120 (691)
Q Consensus        41 ~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~  120 (691)
                      .+.+| .+.+++|++..++|++.+.+.++..++.++.|+++||+ ||||++.++.++..++.++. ..  ++.     ..
T Consensus        20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~--~~~-----~~   89 (355)
T TIGR00896        20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA--PGT-----AL   89 (355)
T ss_pred             cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh--ccH-----HH
Confidence            34444 45678999999999999999999999999999999998 99999999988877776655 32  212     67


Q ss_pred             HHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHH
Q psy195          121 TLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGV  200 (691)
Q Consensus       121 l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i  200 (691)
                      ++++|++.|+|.+...+..+.+..|.+|     ++|+++.++++.+.++|..+++.+.+.+.+.   .  ..+|+..|.+
T Consensus        90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~--~~~w~~~f~~  159 (355)
T TIGR00896        90 LFAGTALIGVGIAIINVLLPSLIKRDFP-----QRVGLMTGLYSMALMGGAALAAAATVPLAQH---S--GGHWQQALAW  159 (355)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---h--hhhHHHHHHH
Confidence            7899999999999988888888888764     4789999999999999999999988877652   0  1248888876


Q ss_pred             HHHHHHHH
Q psy195          201 PALLMFLA  208 (691)
Q Consensus       201 ~~~l~~l~  208 (691)
                      .++..++.
T Consensus       160 ~~~~~~~~  167 (355)
T TIGR00896       160 WALPALLA  167 (355)
T ss_pred             HHHHHHHH
Confidence            65544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.61  E-value=7e-13  Score=143.46  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=109.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc----CchhHHH-HHHHHHHHHHHHHHHHhhcCCCCCch
Q psy195           43 VLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY----LGKFLTI-VILSIVYLGGNVLLTVTAIDPLNIPK  117 (691)
Q Consensus        43 ~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~----lGRkk~i-~ig~il~~ig~ill~~s~~~~~~~~~  117 (691)
                      .+|.++ +++|+|.++.|..... .+...+ .++.|.++||+    +||||.+ +.+.++..+.+..+++.. + .  ..
T Consensus        10 ~~~~~~-~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-~-~--~~   82 (356)
T TIGR00901        10 TLPYWL-RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-P-S--TD   82 (356)
T ss_pred             HHHHHH-HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-c-c--hh
Confidence            455554 5789999999998655 343444 88999999996    4899975 555555555544444321 1 0  00


Q ss_pred             hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCCCchhH
Q psy195          118 RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC-FGQEACFPL  196 (691)
Q Consensus       118 ~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~-~g~~~~w~~  196 (691)
                      .+.+.+..++.+++.+...+...++++|++|    +++|+++.++...+.++|.++++.+++.+....++ .....+||.
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILS----DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence            0445555666778888888999999999887    89999999999999999999999999877652100 000123999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy195          197 AFGVPALLMFLAIIV  211 (691)
Q Consensus       197 ~F~i~~~l~~l~~l~  211 (691)
                      .|.+.++..+++.++
T Consensus       159 ~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       159 IFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998877766555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.60  E-value=3.5e-13  Score=157.42  Aligned_cols=190  Identities=13%  Similarity=0.086  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +|.+.+.+....+....+.+........+.++++++..+.|++.+.+.++..++.++.|+++||+ ||+|.+.+|++++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            44443333333333334445555556667788999999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHhhcC--CCC---------------------C-----------------c--h-h-HHHHHHHHHHHHHhhch
Q psy195          100 GGNVLLTVTAID--PLN---------------------I-----------------P--K-R-TFTLVGLLLIAVGTGGI  135 (691)
Q Consensus       100 ig~ill~~s~~~--~~~---------------------~-----------------~--~-~-~~l~i~~~l~gig~G~~  135 (691)
                      +|.++++++++-  .+.                     .                 .  . . ..++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            999988776310  000                     0                 0  1 1 56789999999999999


Q ss_pred             hhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC---------------CCchhHHHHH
Q psy195          136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQ---------------EACFPLAFGV  200 (691)
Q Consensus       136 ~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~---------------~~~w~~~F~i  200 (691)
                      .+...+++.|.+|    +++|+...++++.+..+|.++|+.+++++.+...+|+.               ..+|+.+|.+
T Consensus       190 ~~~~~~~i~d~~~----~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli  265 (633)
T TIGR00805       190 FPLGISYIDDFAK----SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLI  265 (633)
T ss_pred             hhcCchhhhccCC----ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHH
Confidence            9999999999887    88999999999999999999999999987652211210               0137888888


Q ss_pred             HHHHHHHHHHHHHh
Q psy195          201 PALLMFLAIIVFII  214 (691)
Q Consensus       201 ~~~l~~l~~l~~~~  214 (691)
                      .+++.++.++.++.
T Consensus       266 ~g~l~~l~~v~l~~  279 (633)
T TIGR00805       266 CGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77766655544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.59  E-value=6.3e-13  Score=144.07  Aligned_cols=160  Identities=13%  Similarity=0.101  Sum_probs=111.6

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHH-----HHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy195           43 VLSLYMHLVLL--YDEKTATVMFHI-----WTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNI  115 (691)
Q Consensus        43 ~l~~yl~~~lg--~s~~~ag~i~~~-----~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~  115 (691)
                      +...++.++..  .++.+.+.+.+.     ..++..+++++.|+++||+ ||||++.++.++..++.++...+..  ...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~~~   90 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPS--YAT   90 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCC--hhh
Confidence            34445555543  344555544432     2233346889999999998 9999999999998888887776521  100


Q ss_pred             ch--h-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CC
Q psy195          116 PK--R-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG-QE  191 (691)
Q Consensus       116 ~~--~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g-~~  191 (691)
                      ..  . ..++++|++.|++.|...+..+++++|.+|    +++|++..++...+..+|.++++.+...+........ ..
T Consensus        91 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~  166 (394)
T TIGR00883        91 IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP----PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLE  166 (394)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhc
Confidence            00  0 357899999999999999999999999887    8889999999999999999999887765432000000 13


Q ss_pred             CchhHHHHHHHHHHHHHH
Q psy195          192 ACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       192 ~~w~~~F~i~~~l~~l~~  209 (691)
                      .+|+..|.+.+++.+++.
T Consensus       167 ~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       167 WGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             cchHHHHHHHHHHHHHHH
Confidence            579998887665544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.58  E-value=3e-12  Score=142.93  Aligned_cols=148  Identities=11%  Similarity=0.095  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHL-VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~-~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      |.+++..+. +...+....+.+.+...+.+ ++|+|.++.+++.+++.++..++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            444444433 33334444444445556554 7999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHhh---cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTA---IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus       100 ig~ill~~s~---~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +.+++..++.   .+++     ..+++.|++.|++ |...+.....++++||    +++||++.++.....|+|..+++.
T Consensus       112 i~~~~~~~a~~~~~~s~-----~~lli~r~l~Gig-g~~f~~~~~~vs~wfp----~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPF-----GIFIVIALLCGFA-GANFASSMGNISFFFP----KAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHHHcccCCCH-----HHHHHHHHHHHHH-HHhHHHHHHHHHHHCC----HhHhHHHHHHHHHHHhhHHHHHHH
Confidence            8888777641   1222     7899999999998 6677888889999998    899999999997777777776666


Q ss_pred             HHHH
Q psy195          177 ITPI  180 (691)
Q Consensus       177 i~~~  180 (691)
                      +.+.
T Consensus       182 l~p~  185 (462)
T PRK15034        182 VAPL  185 (462)
T ss_pred             HHHH
Confidence            5554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.58  E-value=3e-11  Score=133.38  Aligned_cols=162  Identities=12%  Similarity=0.076  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc----CchhH-HHHHHHHHHHHHHHHH
Q psy195           31 FCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY----LGKFL-TIVILSIVYLGGNVLL  105 (691)
Q Consensus        31 ~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~----lGRkk-~i~ig~il~~ig~ill  105 (691)
                      +.....+.-....+|.|+.+ .|++.++.|++..+...  .+..++.|+++||+    +|||| .+.++.++..+++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            33444455556779999985 59999999998766655  69999999999995    16766 6777777766666665


Q ss_pred             HHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          106 TVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       106 ~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      .+.. ...+     +.+++..++.++..+...+...++++|.+|    +++|+++.++...+.++|..+++.+.+.+.+.
T Consensus        86 ~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~al~~~~~~----~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         86 AFCPPHAAL-----WPLAGLAVLVAFLSASQDIVFDAYSTDVLH----PEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HhcCccchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            5431 1111     445566666778888888999999999887    88899999999999999999999988887652


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                            ..+||..|.+.+++.++..+
T Consensus       157 ------~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        157 ------VLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             ------ccCHHHHHHHHHHHHHHHHH
Confidence                  24799999987776554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.52  E-value=1e-10  Score=131.52  Aligned_cols=193  Identities=11%  Similarity=0.088  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhH----hcCchhHHHHHH-HH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD----TYLGKFLTIVIL-SI   96 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaD----r~lGRkk~i~ig-~i   96 (691)
                      .+..+....+...+++-...++++.|+ +.+|.+...++.+..+..+...+..|+.|+++|    |+ ||||.++++ .+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            344444455555667666667777776 579999999999999999999999999999999    57 999998875 55


Q ss_pred             HHHHHHHHHHHhhcCC------CCCchh----HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTAIDP------LNIPKR----TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFS  166 (691)
Q Consensus        97 l~~ig~ill~~s~~~~------~~~~~~----~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~  166 (691)
                      ...++.++++.+....      ......    ..+.++..+..++.....++..++++|.+|  .++++++.+.++....
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p--~~~~~~~~a~~~~~~~  160 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTG--GDARRTRIANAYFSFF  160 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--chhHHHHHHHHHHHHH
Confidence            5555555555432100      000000    234555556667888888899999999886  2222346899999999


Q ss_pred             HHHHHHHHHHHHHHhh--ccccc----cCCC--CchhHHHHHHHHHHHHHHHHHHhhccc
Q psy195          167 INAGSLISTFITPIFR--HDMQC----FGQE--ACFPLAFGVPALLMFLAIIVFIIGKPM  218 (691)
Q Consensus       167 ~nlG~~igp~i~~~l~--~~~~~----~g~~--~~w~~~F~i~~~l~~l~~l~~~~~~~~  218 (691)
                      .++|.++|+.++++..  .....    ..+.  .+.+..|.+.++++++..++.....++
T Consensus       161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            9999999999888642  10000    0000  256789998887777776665554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.51  E-value=1.4e-11  Score=132.59  Aligned_cols=183  Identities=12%  Similarity=0.106  Sum_probs=144.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      ++|.+++-.+. +...+..+.+.+.+..++.+++|+|+.|.++++++-.+...+..++-|.+.||+ |.|++..++.++.
T Consensus        12 ~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence            45555554443 333455556777788888999999999999999999999999999999999998 9999999898888


Q ss_pred             HHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        99 ~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      .+-++.++++. .++.     +.+++..++.|++.|.+ +...++.+.+||    ++++|.+.+++. ..|+|..+...+
T Consensus        90 ~IP~~~~~~a~~~~~~-----~~ll~~gll~G~~GasF-av~m~~~s~~fP----~~~qG~AlGI~g-~GN~G~av~q~~  158 (417)
T COG2223          90 LIPCLGLAFAVTYPST-----WQLLVIGLLLGLAGASF-AVGMPNASFFFP----KEKQGLALGIAG-AGNLGVAVAQLV  158 (417)
T ss_pred             HHHHHHHHHHccCCch-----HHHHHHHHHHhccccee-hcccccccccCC----hhhhhHHHHHhc-cccccHHHHHHH
Confidence            88777777763 3333     68888899999886665 566777999998    899999999999 889999999999


Q ss_pred             HHHhhccccccCCCCc---hhHHHHHHHHHHHHHHHHHHhhcccccc
Q psy195          178 TPIFRHDMQCFGQEAC---FPLAFGVPALLMFLAIIVFIIGKPMYKI  221 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~---w~~~F~i~~~l~~l~~l~~~~~~~~~~~  221 (691)
                      ++.+..       ..+   |+..-.+..+.+++..+.+++..+..++
T Consensus       159 ~P~v~~-------~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         159 APLVAV-------AFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             HHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            998876       345   8877777777777766666666554433

>KOG0255|consensus

Probab=99.50  E-value=1.2e-11  Score=141.52  Aligned_cols=154  Identities=11%  Similarity=0.064  Sum_probs=125.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q psy195           50 LVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIA  129 (691)
Q Consensus        50 ~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~g  129 (691)
                      +..+.+.....+..+++.+|..+|+++.|.++|++ |||++++++.++.+++.++.+++.  ++     ..+.+.|++.|
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--~~-----~~~~~~Rfl~G  182 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--NY-----WMFLIFRFLSG  182 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--cH-----HHHHHHHHHHH
Confidence            45678888999999999999999999999999996 999999999999999888777763  23     88999999999


Q ss_pred             HHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          130 VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       130 ig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      ++.++...+...+++|.++    ++.|+.+.++ ......|+.+++..++++..         +||+.+++..+..++.+
T Consensus       183 ~~~~~~~~~~~~~~~E~~~----~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---------~Wr~~~~~~~~~~~~~~  248 (521)
T KOG0255|consen  183 FFGSGPLTVGFGLVAEIVS----PKQRGLALTL-GGFFFVGGLMLPAGAAYITR---------DWRWLFWIISIPSGLFL  248 (521)
T ss_pred             hhccchhHHhHhhheeecC----cchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHH
Confidence            9999999999999999887    8999999999 66777777778887777754         49998888766555443


Q ss_pred             HH-HHh-hcccccccCCC
Q psy195          210 IV-FII-GKPMYKINKPK  225 (691)
Q Consensus       210 l~-~~~-~~~~~~~~~~~  225 (691)
                      +. ++. ..+++...+.+
T Consensus       249 ~~~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  249 LLWFLPPESPRWLLSKGR  266 (521)
T ss_pred             HHHHccCcChHHHHHcCc
Confidence            33 233 45555544433

>PRK09848 glucuronide transporter; Provisional

Probab=99.48  E-value=3.5e-11  Score=134.89  Aligned_cols=148  Identities=14%  Similarity=0.101  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc---CchhHHH-HHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY---LGKFLTI-VILSIVYLGGNV  103 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~---lGRkk~i-~ig~il~~ig~i  103 (691)
                      +..+....++....++++.|+++.+|++..++|.+.+...+...+..++.|+++||.   .||||.. .++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            345555666666778888999999999999999999999999999999999999994   2777754 555554444443


Q ss_pred             HHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHH-----HHHHHHHHH
Q psy195          104 LLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSIN-----AGSLISTFI  177 (691)
Q Consensus       104 ll~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~n-----lG~~igp~i  177 (691)
                      ++.... ........ ...++..++.+++.+...++..++..+..+   ++++|.+..++..++.+     +|..++|.+
T Consensus        95 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~---~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i  170 (448)
T PRK09848         95 LVFWVP-TDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQ---QPQSRARLGAARGIAASLTFVCLAFLIGPSI  170 (448)
T ss_pred             HHHhCc-CCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332111 01111111 334455567788888888877887776554   45678888777665433     455555555


Q ss_pred             HH
Q psy195          178 TP  179 (691)
Q Consensus       178 ~~  179 (691)
                      .+
T Consensus       171 ~~  172 (448)
T PRK09848        171 KN  172 (448)
T ss_pred             HH
Confidence            54

>KOG0252|consensus

Probab=99.47  E-value=4.9e-13  Score=144.30  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc-hh-HHHHHHHHHHHH
Q psy195           53 LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIP-KR-TFTLVGLLLIAV  130 (691)
Q Consensus        53 g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~-~~-~~l~i~~~l~gi  130 (691)
                      +++....+.+..+..++..+++++.||++|++ |||++....+++.++++++.+++..  ...+ +. ..+...|+++|+
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~--~~~~~~~m~~L~~~R~~LGi  156 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG--TTSPLGVMMTLCFFRFLLGI  156 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC--CCCCcchhhHHHHHHHHhhc
Confidence            37788899999999999999999999999998 9999999999999998885555411  1111 22 778899999999


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      |.|+-.|...+..+|    -+..++||...++......+|.+.|..
T Consensus       157 GIGGDYPlSAtI~SE----~an~~~RGa~iaavFa~Qg~GilaG~i  198 (538)
T KOG0252|consen  157 GIGGDYPLSATIMSE----SANKKTRGAFIAAVFAMQGFGILAGGI  198 (538)
T ss_pred             cccCCCcchHHHhhh----hhhhccccceeEEEEEecchhHhhccH
Confidence            999999999999999    555888888776655544444444433

>PRK09669 putative symporter YagG; Provisional

Probab=99.45  E-value=4.3e-11  Score=134.09  Aligned_cols=176  Identities=14%  Similarity=0.099  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh----cCchhH-HHHHHHHHHHHHHH
Q psy195           29 NEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADT----YLGKFL-TIVILSIVYLGGNV  103 (691)
Q Consensus        29 ~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr----~lGRkk-~i~ig~il~~ig~i  103 (691)
                      ..+.....+..+..+++.|+++.+|+|...+|.+..+..+...+..|+.|+++||    + |||| .++++.+...++.+
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHH
Confidence            3344455555667789999999999999999999999999999999999999999    6 8755 45566666666655


Q ss_pred             HHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          104 LLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       104 ll~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      ++..  .|....... ..+++..++.+.+..+...+..++.+|+.+   ++++|++..++.....++|..+++.+...+.
T Consensus        96 l~f~--~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~---~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~  170 (444)
T PRK09669         96 LTFY--TPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITN---DPRERHSLQSWRFALSFIGGLIVSVIALPLV  170 (444)
T ss_pred             HHHh--CCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433  232221122 445555566677777777778888988764   4678999999999999999888877554333


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      ...+..+...+|+..+.+.+++.++..+
T Consensus       171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~  198 (444)
T PRK09669        171 DILGKGDEQKGYFYAMMVMGLLGVVLFF  198 (444)
T ss_pred             HHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            2110000124677666665555444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.45  E-value=4.3e-11  Score=135.33  Aligned_cols=145  Identities=14%  Similarity=0.041  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhH----hcCch-hHHHHHHHHHHHHHHH
Q psy195           29 NEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD----TYLGK-FLTIVILSIVYLGGNV  103 (691)
Q Consensus        29 ~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaD----r~lGR-kk~i~ig~il~~ig~i  103 (691)
                      ..+...+.+..+.++++.|+++.+|+++..+|.+..+..+...+..|+.|+++|    |+ || |+-++++.+...++..
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHH
Confidence            344556666677788999999999999999999999999999999999999999    76 98 5556667776666665


Q ss_pred             HHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          104 LLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       104 ll~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++...  |....... ..+++..++.+++......+..++.+|..+   ++++|.+..++.....++|+.+.+.+..
T Consensus        93 llf~~--p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~---~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429         93 LLFSA--HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL---DKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55432  22211111 344455566678888888888888888653   5889999999978888888666655544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.42  E-value=1.1e-09  Score=121.28  Aligned_cols=135  Identities=17%  Similarity=0.149  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTV  107 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~  107 (691)
                      ...++..+.+-...++++.|+++ .|+|..+.|.+.++..+...+++++.|+++||...+||.+.+..++..+...+...
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555667889999975 78999999999999999999999999999999834667766655554444333333


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195          108 TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus       108 s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      ...+       +.+++..++..+......|...++..+...      +++.-++...+..++|..++.+
T Consensus        88 ~~~f-------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~------~~~~~YG~iRlwGSiGf~~~~~  143 (400)
T PF03825_consen   88 SSSF-------WWLFVIMLLFSFFFSPTMPLSDSIALSYLG------DRGKDYGRIRLWGSIGFIVAAL  143 (400)
T ss_pred             hccH-------HHHHHHHHHHHHHHccHHHHHHHHHHHHcc------cccCCCCcchhhhhHHHHHHHH
Confidence            2221       445555566666666655665555555332      2333444455555666665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.42  E-value=7.6e-11  Score=131.45  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhH----hcCchhHHH-HHHHHHHHHHHHHH
Q psy195           31 FCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD----TYLGKFLTI-VILSIVYLGGNVLL  105 (691)
Q Consensus        31 ~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaD----r~lGRkk~i-~ig~il~~ig~ill  105 (691)
                      +...+.+.....+++.|+++.+|+++..+|.+..+..+...+..|+.|+++|    |+ ||||.. ++|.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            3334444455567889999999999999999999999999999999999999    87 977755 45777777777666


Q ss_pred             HHhhcC-CCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          106 TVTAID-PLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       106 ~~s~~~-~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      ... .| ....... ..+.+..++..++......+..++.+|..+   ++++|.+..++...+..+|.++...+.+.+.+
T Consensus        90 f~~-~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~---~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~  165 (428)
T PF13347_consen   90 FSP-PPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP---DPDERTRLSSWRMIFSMIGSLLASFLAPILVS  165 (428)
T ss_pred             hcc-ccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc---cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            543 11 1111111 344666677788899998999999999765   46789999999999999998777776665543


Q ss_pred             cccccCCC-CchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          184 DMQCFGQE-ACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       184 ~~~~~g~~-~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      ..+. +.. .+|+....+.+++.++..++.....
T Consensus       166 ~~g~-~~~~~~~~~~~~v~~iv~~v~~~i~~~~~  198 (428)
T PF13347_consen  166 WFGG-GDTSNGYRWMALVLAIVGLVFFLITFFFV  198 (428)
T ss_pred             hhcc-CccchHHHHHHHHHHHHHHHHhhhhhhee
Confidence            2110 001 2688777766665555554444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.40  E-value=2.2e-11  Score=134.44  Aligned_cols=151  Identities=10%  Similarity=0.062  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           40 MRTVLSLYMHLVLLYDEKT-ATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        40 i~~~l~~yl~~~lg~s~~~-ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      ..++...|+.+++|++..+ .|.+.+++..+..++.+++|+++||+ |.|+++.++.+...+..+++.++...       
T Consensus        44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~Sl-------  115 (511)
T TIGR00806        44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTSV-------  115 (511)
T ss_pred             hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            3455777888999999999 99999999999999999999999997 99999999999999988888876321       


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhH--
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL--  196 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~--  196 (691)
                      ..+.+.|++.|++.|... +...+++.++|    +++|+++.++...+.++|.++++.+++++..        .+|+.  
T Consensus       116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP----~kER~ratsi~~sg~~vG~~Ia~~L~qll~s--------~gWr~y~  182 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVP----PSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT--------LGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCchhHH
Confidence            789999999999999998 99999999998    9999999999999999999999999998432        45763  


Q ss_pred             -HHHHHHHHHHHHHHH
Q psy195          197 -AFGVPALLMFLAIIV  211 (691)
Q Consensus       197 -~F~i~~~l~~l~~l~  211 (691)
                       ..++..+...+++++
T Consensus       183 ~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       183 TLNIISLVFMTFSVFL  198 (511)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             444444444444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2.7e-09  Score=114.52  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchh
Q psy195           40 MRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLNIPKR  118 (691)
Q Consensus        40 i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~~~~~  118 (691)
                      ....+...+++.++++..+++++...+..+..+.+++.|++.+|+ |+|+.+.+|+.++.+|+.++.-++ ...+     
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~~~~y-----  104 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAASSKSY-----  104 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhhhhhH-----
Confidence            444577788889999999999999999999999999999999997 999999999999999998876442 2222     


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      .++++++++++.|.|...+..+++++...+    ++.-.+-.+..+....+|+++||+++.++..
T Consensus       105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~----~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         105 GFFLVALFILASGIGLLETAANPYVTLLGK----PESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHHhhhHHHHhccchHHHHhCC----chhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            788999999999999999999999999887    4444555777888899999999999987654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=6.3e-11  Score=134.57  Aligned_cols=153  Identities=12%  Similarity=0.142  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.+...+...++....+|++..++|.|+++.+|++..+++.+.....++..++.+++|+++||+ |||+++.++.++..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~  328 (490)
T PRK10642        250 RSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFV  328 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Confidence            3333333334455678888889999999888999999888888888899999999999999998 999999888765444


Q ss_pred             HHHH-HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVL-LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 g~il-l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      +.+. +......+.     ..+++++++.+++.+...+..+++..+.+|    ++.|+++.++.+....+++.++|.+.+
T Consensus       329 ~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p----~~~Rg~~~g~~~~~~~~~g~~~p~i~g  399 (490)
T PRK10642        329 LAIPAFILINSNVI-----GLIFAGLLMLAVILNCFTGVMASTLPAMFP----THIRYSALAAAFNISVLVAGLTPTLAA  399 (490)
T ss_pred             HHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 221111111     566778888888877777778888889888    888999999755556666778888888


Q ss_pred             Hhhc
Q psy195          180 IFRH  183 (691)
Q Consensus       180 ~l~~  183 (691)
                      ++.+
T Consensus       400 ~l~~  403 (490)
T PRK10642        400 WLVE  403 (490)
T ss_pred             HHHH
Confidence            8765

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.35  E-value=4.1e-09  Score=115.81  Aligned_cols=176  Identities=8%  Similarity=-0.043  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHHHHhHHHH-HHHhHhcCchhHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVM--FHIWTGLCYFFPLFG-GIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i--~~~~~i~~~i~~l~~-G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +..+....+.+...+....+.+|.|+++ .|.|..+.|..  .+...+...+.+++. ++.+||+ ||||..++++.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            3444555566677777777889999864 69999999997  355566666666666 6689997 99999766653322


Q ss_pred             H-HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 G-GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 i-g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      . ....+... .+..  .....+....++.++..+...+...++..|..+    +++++...+....+..+|.++|+.+.
T Consensus        81 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~----~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        81 SACLASLALV-GPDV--AGAGWAVGLLACASLASATQDIATDGMAAEHFN----GRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHcC-Ccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            2 12212211 0100  000223333444555566666666666677554    66777777777777788999998888


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      +++.+       ..+|+..|++.+++.++..+..+.
T Consensus       154 ~~l~~-------~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       154 LVLFG-------KFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHH-------HhCHHHHHHHHHHHHHHHHHHHHH
Confidence            87776       468999999888776655544333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.34  E-value=9.7e-10  Score=124.27  Aligned_cols=173  Identities=18%  Similarity=0.144  Sum_probs=123.8

Q ss_pred             chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCc-----hhHHHHH
Q psy195           20 PKAVF-FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLG-----KFLTIVI   93 (691)
Q Consensus        20 ~r~~~-~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lG-----Rkk~i~i   93 (691)
                      ++..+ .+....+..... +.+...++.++++++|++.++.+...+...+...+-++ .|.++|++ +     ||+.+.+
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~  100 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVL  100 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHH
Confidence            44333 333355666666 66667788889989999999999998888888888665 99999998 8     7777777


Q ss_pred             HHHHHH-HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy195           94 LSIVYL-GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSL  172 (691)
Q Consensus        94 g~il~~-ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~  172 (691)
                      +.++.. ++...++.  .++.    .....+.+++.+++.+......-++..|+.+  ++++.++...++.+.+.++|.+
T Consensus       101 ~~~l~~~~~~~~l~~--~~~~----~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~  172 (468)
T TIGR00788       101 SGLLGSAILYGLLPG--KVSS----AKVAAAFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGL  172 (468)
T ss_pred             HHHHHHHHHHHhccc--ccch----HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHH
Confidence            766542 22222221  1111    0333347788899999999999999999885  2334445566777777889999


Q ss_pred             HHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          173 ISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       173 igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      +|+.+++.+.+       ..+|+..|++.+++.++..+
T Consensus       173 vg~~l~G~l~~-------~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       173 ISSLLGGPLLD-------KTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHH-------hcCcchHHHHHHHHHHHHHH
Confidence            99999998876       46799999887776665533

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.34  E-value=1.2e-10  Score=128.37  Aligned_cols=178  Identities=15%  Similarity=0.073  Sum_probs=129.3

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHH
Q psy195           16 QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILS   95 (691)
Q Consensus        16 ~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~   95 (691)
                      .+++++..+..+...+.....++....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~  289 (393)
T PRK15011        211 PRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAA  289 (393)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHH
Confidence            344445444444444444444445556789999999999999999988887888888999999999998 9999888776


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195           96 IVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus        96 il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      +...+....+.....+       ..+.+.+++.+++.|...+..+++..|.+|     ++|+++.++++...++|..+++
T Consensus       290 ~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-----~~~g~~~~~~~~~~~lg~~~g~  357 (393)
T PRK15011        290 VAGVCFYAGMLMAHSP-------AILLGLQLLNAIYIGILGGIGMLYFQDLMP-----GQAGSATTLYTNTSRVGWIIAG  357 (393)
T ss_pred             HHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHHHHH
Confidence            5554443333222211       455667777777777776777777888775     3588999998888999999999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .+++.+.+       ..+|+..|.+..++.+++++..+
T Consensus       358 ~l~G~i~~-------~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        358 SLAGIVAE-------IWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999877       45799888877766666554443

>KOG2533|consensus

Probab=99.33  E-value=5.6e-10  Score=125.92  Aligned_cols=155  Identities=14%  Similarity=0.077  Sum_probs=122.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q psy195           50 LVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIA  129 (691)
Q Consensus        50 ~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~g  129 (691)
                      +++|+...+-+.+.++|.++..++.+++|+|.||+ +-.+.+....++..+-.++....  .+.     +.+++.|++.|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--~s~-----~~~ialr~llG  145 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--HSF-----PGLIALRFLLG  145 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--hhh-----HHHHHHHHHHH
Confidence            56788889999999999999999999999999997 86666655555444433333222  222     78899999999


Q ss_pred             HHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          130 VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       130 ig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      +.+++..|+...+++.+|.    +++|+.-+++++...++|.++|.++++.+.+..+..+ ..||++.|.+.+++.+...
T Consensus       146 l~es~~wP~~~~~lg~wy~----~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~-~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  146 LFESGGWPGVVAILGNWYG----KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG-LAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             HHhcccchHHHHHHHhhcC----hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC-cCCceeehhHHHHHHHHHH
Confidence            9999999999999999998    8999999999999999999999999887543111111 5789999999998877666


Q ss_pred             HHHHhhcc
Q psy195          210 IVFIIGKP  217 (691)
Q Consensus       210 l~~~~~~~  217 (691)
                      ++.++..|
T Consensus       221 i~~f~~lp  228 (495)
T KOG2533|consen  221 IVVFFFLP  228 (495)
T ss_pred             heEEEEec
Confidence            55444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.30  E-value=1.5e-10  Score=130.68  Aligned_cols=183  Identities=10%  Similarity=0.027  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.+|.+.+..++....+++...++|.|+++.+|++..+++...+...++..++.+++|+++||+ |||+.+.++..+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            3466666666777777778888999999999999999999999999999999999999999997 999887665444443


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~i~~  179 (691)
                      +..+.......+.     ....+.+++.|++.............|.+|    ++.|+++.++.+...++ |.+++|.+.|
T Consensus       337 ~~~~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p----~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        337 IFTLGVYQHATSE-----YMYLASLFALGFLVFGPQLLIGVAAVGFVP----KKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHhcCcH-----HHHHHHHHHHHHHHhhHHHHHHHHHHhhcc----hhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            3322222111111     344566666665443333333456678887    88999999999988886 7789999999


Q ss_pred             Hhhcccc-c---cC-CCCchhHHHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQ-C---FG-QEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       180 ~l~~~~~-~---~g-~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      ++.+... .   .+ ...+|+..|.+..+..+++++..+
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            8876100 0   00 024699999887776666655444

>KOG3764|consensus

Probab=99.30  E-value=3.2e-11  Score=128.43  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=132.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy195           51 VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAV  130 (691)
Q Consensus        51 ~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gi  130 (691)
                      .++-+.++.|++.+.+.+...+..++.|.+.||+ |+|-.+++|.+++..+++++++....       ++++++|.++|+
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~sy-------~~l~vAR~LQgv  171 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNSY-------PMLFVARSLQGV  171 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcchh-------HHHHHHHHHhhh
Confidence            3566788999999999999999999999999997 99999999999999999999987432       889999999999


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      |.+...++-.++++|.||   +.++|++++|....++.+|.++||.+++.+.+       ..|+..+|.+.++++++..+
T Consensus       172 gsA~~~tsglamlAd~f~---~d~er~~vmGialgfislG~lvgPpfGGilYe-------~~Gk~aPFlVL~~v~Lld~~  241 (464)
T KOG3764|consen  172 GSAFADTSGLAMLADVFP---EDNERGSVMGIALGFISLGVLVGPPFGGILYE-------FAGKSAPFLVLAIVLLLDGA  241 (464)
T ss_pred             hHHHHHhhhHHHHHHHcc---cchhhhHHHHHHHHHHhccceecCCcccchHh-------hcCCcCcHHHHHHHHHHHHH
Confidence            999999999999999998   56779999999999999999999999999988       57899999999988777765


Q ss_pred             HHHhh
Q psy195          211 VFIIG  215 (691)
Q Consensus       211 ~~~~~  215 (691)
                      +-++.
T Consensus       242 L~l~v  246 (464)
T KOG3764|consen  242 LQLLV  246 (464)
T ss_pred             HHHhe
Confidence            54443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.29  E-value=2.5e-10  Score=125.53  Aligned_cols=166  Identities=14%  Similarity=0.127  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAID  111 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~  111 (691)
                      +..+++.....+++.|+.+ .|++  .++...+.+.++..++.++.|+++||+ ||||.+.++.++..++.+++.....+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAPSP  302 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhccH
Confidence            3455566666778888764 4663  446667778888889999999999997 99999988887777776665553211


Q ss_pred             CCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q psy195          112 PLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE  191 (691)
Q Consensus       112 ~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~  191 (691)
                             ..+++++++.|++.+...+.......|.+|    +++|++..++++...++|..+++.+.+.+.+       .
T Consensus       303 -------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------~  364 (399)
T PRK05122        303 -------WMALIGAALTGFGFSLVFPALGVEAVKRVP----PQNRGAALGAYSVFLDLSLGITGPLAGLVAS-------W  364 (399)
T ss_pred             -------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence                   556677888999999888887888888776    8999999999999999999999998888876       4


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhcccc
Q psy195          192 ACFPLAFGVPALLMFLAIIVFIIGKPMY  219 (691)
Q Consensus       192 ~~w~~~F~i~~~l~~l~~l~~~~~~~~~  219 (691)
                      .||+..|.+.+++.+++++..+..+++.
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        365 FGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6799999888777777666555444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.29  E-value=5.7e-10  Score=123.06  Aligned_cols=176  Identities=11%  Similarity=0.037  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +..+.+.+..++...++++...++|.|+.+ .|++..++|...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345555555556677888888899999976 799999999999999999999999999999997 999999888777777


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +.+++...... .     ..  +..++.|++.|...+.......+.++   +++++++.++..+...+++..++|.+.++
T Consensus       283 ~~~~~~~~~~~-~-----~~--~~~~l~g~g~g~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~~~~~gp~~~G~  351 (393)
T PRK09705        283 GFCGFIWLPLQ-L-----PV--LWAMVCGLGLGGAFPLCLLLALDHSV---QPAIAGKLVAFMQGIGFIIAGLAPWFSGV  351 (393)
T ss_pred             HHHHHHHccch-H-----HH--HHHHHHHHhccchHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654432110 0     11  22345678888877777777777664   35688999999999999999999999999


Q ss_pred             hhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          181 FRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       181 l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      +.+.      ..+|...|.+.++..+++++.....
T Consensus       352 l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        352 LRSI------SGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHH------hCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9873      2347778887776666555544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.28  E-value=1e-08  Score=112.51  Aligned_cols=178  Identities=11%  Similarity=0.142  Sum_probs=106.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++++|.+....+...+++-...++++.++++..|++.+++|.+.++..+...+.+|+.|.++||+ |.||-+++...+..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILL   84 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHH
Confidence            55777777766666666667789999999998999999999999999999999999999999997 97776554433222


Q ss_pred             --HHHHHHH-HhhcCCCCCchhHHHHHHHHHHHHHhhchh-hhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195          100 --GGNVLLT-VTAIDPLNIPKRTFTLVGLLLIAVGTGGIK-PCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus       100 --ig~ill~-~s~~~~~~~~~~~~l~i~~~l~gig~G~~~-~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                        .+..... ....  +.    .-++++.++.++..+... +.++.  .|.+- ..-.++.+.=+|-..+..++|.+++.
T Consensus        85 ~l~~pff~~v~~pl--l~----~n~~lg~iig~i~l~~~f~~~~~~--~Ea~~-er~sr~~~feYG~~R~wGSig~ai~s  155 (412)
T PF01306_consen   85 LLFGPFFIYVFGPL--LQ----SNFWLGAIIGGIYLGLVFNAGVPL--SEAYA-ERVSRRNGFEYGRARMWGSIGFAIAS  155 (412)
T ss_dssp             HTCHHHHHHTHHHH--HH----TT-HHHHHHTTTTTTTTTTTHHHH--HHHHH-HHHHHHHSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHcccchH--HHHHH-HHHHHHhcCCcchHHHHhhHHHHHHH
Confidence              2222221 1110  00    112333333333333322 22222  24332 22244455556777778899999999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      .++|.+.+        .+-+..|++..+..++..++.+..
T Consensus       156 ~~~G~L~~--------i~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  156 LLAGILFN--------INPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHhheeee--------eCccHHHHHHHHHHHHHHHHHHHc
Confidence            99998865        233566776554444333333333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.27  E-value=4.4e-10  Score=119.45  Aligned_cols=173  Identities=21%  Similarity=0.321  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH-HHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL-TIVILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk-~i~ig~il~~   99 (691)
                      |.++...+..++...++.....+++.++.+.+|.+..+.+.+.....++..++.++.|+++||+ |||+ .+.++.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            3445555556666667777778889998887899999999999999999999999999999998 9999 9999988888


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+........       ....+..++.|++.+...+...++..|.+|    +++|++.++......++|..+++.+.+
T Consensus       254 i~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         254 LGLLLLALAPSL-------ALLLVALLLLGFGLGFAFPALLTLASELAP----PEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             HHHHHHHHhccH-------HHHHHHHHHHHHHHhccchhHHHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777654321       667888999999999999999999999877    799999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+.+       ..+|+..|.+.+++.+++.+..
T Consensus       323 ~l~~-------~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         323 LLLD-------TGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHhc-------ccCcchHHHHHHHHHHHHHHHh
Confidence            9876       4678888888777766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.26  E-value=2.1e-10  Score=123.49  Aligned_cols=169  Identities=15%  Similarity=0.108  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .++.+....++..........+++.|. +++|.+..+++.+.+.+.++..++.+++|+++||+ |||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444444444444445566665 56899999999999999999999999999999997 9999999888887777


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .+++........     ..+++..++.+++.|...+..+++.+|.+|    +++|++..++.+...++|..++|.+.+.+
T Consensus       284 ~~~~~~~~~~~~-----~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  354 (377)
T TIGR00890       284 MAAMLFIPMLND-----VLFLATVALVFFTWGGTISLFPSLVSDIFG----PANSAANYGFLYTAKAVAGIFGGLIASHA  354 (377)
T ss_pred             HHHHHHcccchh-----HHHHHHHHHHHHHhccchhccHHHHHHHhh----hhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            766554321100     334456677888888888888889999887    88999999999999999999999999988


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLA  208 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~  208 (691)
                      .+       ..||+..|.+.+++.+++
T Consensus       355 ~~-------~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       355 LT-------EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             Hh-------hhchhhHHHHHHHHHHHh
Confidence            76       467998888877655554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.26  E-value=4e-10  Score=132.99  Aligned_cols=134  Identities=8%  Similarity=0.006  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhh
Q psy195           60 TVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCV  139 (691)
Q Consensus        60 g~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~  139 (691)
                      .....+..++..++.+++|+++||+ |||+++.++.++..++.+++++....       ..+++.+++.+++.++..+..
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s~-------~~ll~~~~l~g~~~~~~~~~~  669 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNSE-------SAMIALLCLFGGLSIAAWNAL  669 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHccH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788899999999999997 99999999988888877776654221       456666777888888888889


Q ss_pred             hhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          140 SSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       140 ~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .++.+|++|    .+.|++++++.+....+|+++||.+++.+..        .+...+|.+.++++++++++.+
T Consensus       670 ~a~~aEl~P----t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~--------~~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       670 DVLTVELYP----SDKRATAFGFLNALCKAAAVLGILIFGSFVG--------ITKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence            999999998    8899999999999999999999999987765        1245667766666555544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2615|consensus

Probab=99.26  E-value=5.4e-10  Score=118.56  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=103.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q psy195           52 LLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVG  131 (691)
Q Consensus        52 lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig  131 (691)
                      .+.+..-+|.+-+.|.++..+.++..|.++|++ |||.+++++++...+..++.+.+..-       ..+.++|++.|+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~F-------~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRNF-------AAFVLARFLGGIF  134 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhc
Confidence            344567789999999999999999999999999 99999999998888888887776431       5677789999999


Q ss_pred             hhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          132 TGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       132 ~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      -|.. ..+.++++|.++    +++|+.+++....+..+|.++||.+++++..
T Consensus       135 kgnl-~v~rAiisdV~s----ek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  135 KGNL-SVIRAIISDVVS----EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             cCch-HHHHHHHHhhcC----hhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9886 457899999887    7999999999999999999999999999865

>PRK03699 putative transporter; Provisional

Probab=99.24  E-value=5.1e-10  Score=123.32  Aligned_cols=170  Identities=12%  Similarity=0.051  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.++.+.+..++...+++++..++|.|+++.+|++..+++.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4555555555666677778888999999999999999999999999999999999999999997 999988877666555


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +..++.....  .     ....+..++.|++.+...+...++..+..|     +.+++..++.....++|..++|.+.++
T Consensus       284 ~~~~~~~~~~--~-----~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~g~~i~p~~~G~  351 (394)
T PRK03699        284 LMYLFVNTDD--P-----SHLLYAILGLGFFSSAIYTTIITLGSQQTK-----VASPKLVNFILTCGTIGTMLTFVVTSP  351 (394)
T ss_pred             HHHHHHHcCC--c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5444433221  1     445556677888877777777777777654     234556777778889999999999999


Q ss_pred             hhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          181 FRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       181 l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      +.+       ..|++..|++.+++.+++.+
T Consensus       352 l~~-------~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        352 IVA-------HFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHH-------HhCchhhhhhhHHHHHHHHH
Confidence            877       45688777766665555543

>KOG2504|consensus

Probab=99.24  E-value=1.2e-09  Score=124.23  Aligned_cols=174  Identities=10%  Similarity=0.045  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTV---LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~---l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+++..++.....+++...   +-..++++++-+..+++++.++......+..|+.+.+.||+ |.|.++++|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            34444454555555544432   45556788999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHH-HHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGL-LLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~-~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      |+++..++..-       +.+++.. ++.|+|.|+...+....+..+|     +++|+.+.++-..+..+|.++-|.+.-
T Consensus       124 g~~lssF~~~i-------~~l~lt~gvi~G~G~~~~~~paiviv~~YF-----~kkR~lA~Gia~~GsG~G~~~~~~l~~  191 (509)
T KOG2504|consen  124 GLLLSSFATSL-------WQLYLTFGVIGGLGLGLIYLPAVVILGTYF-----EKKRALATGIAVSGTGVGTVVFPPLLK  191 (509)
T ss_pred             HHHHHHHHhhH-------HHHHHHHHHHhhccchhhhcchhhhhhhHh-----HHHHHHHHhhhhccCCcceeeHHHHHH
Confidence            99998887421       4444444 5679999999988889999888     589999999988888888888788777


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      ++.+       ..|||..+++.+.+.+-.+..-.+.+|
T Consensus       192 ~l~~-------~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  192 YLLS-------KYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHH-------HhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777       578999888877776555555555555

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.23  E-value=8.1e-08  Score=112.25  Aligned_cols=590  Identities=11%  Similarity=-0.039  Sum_probs=338.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH-HHHHHHHH
Q psy195           52 LLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTL-VGLLLIAV  130 (691)
Q Consensus        52 lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~-i~~~l~gi  130 (691)
                      .+...........++.....+..+.....+|-..|+........+.++++.+.+.+.+.+........... ++.+.+.+
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL   94 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL   94 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence            33344456677888999999999999999999966677777776666776776666554322110001111 35556788


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCchhHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQ-CFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~-~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      +.++..++.+.+.+++.+ .-+++++.+..+++++..+.+.+ |.+++..+....+ +++...++...++..++.+++.+
T Consensus        95 ia~G~GgiKp~vsaf~gd-qf~~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~  172 (654)
T TIGR00926        95 IALGTGGIKPCVSAFGGD-QFEERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI  172 (654)
T ss_pred             HHhhccccccCchhhhHh-hcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence            889999999999999997 66666788899999999998877 5666666554221 11100011123334444455555


Q ss_pred             HHHHhhcccccccCCCCCcchhHHHHHHHHHhhhcccccccccccch-hhhcccccCCccHHHHHHHHHHHHHHHHHHHH
Q psy195          210 IVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHW-LDYANDKYDQGTIEDIKTLLRILLLFVPLPIF  288 (691)
Q Consensus       210 l~~~~~~~~~~~~~~~~~~~~~i~~vi~~~i~~~~~~~~~~~~~~~~-l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~~~  288 (691)
                      +.++.....++.-++.+.......++.......++. + ....+.++ .........+..+++++...+++.++.....+
T Consensus       173 ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-~-~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~  250 (654)
T TIGR00926       173 LALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-R-FSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPL  250 (654)
T ss_pred             HHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-h-hccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence            666666655655566555444455655444333321 1 00000111 00000001122334577888889999999999


Q ss_pred             HHHHhcccchHHHHHHHhcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchh-HHHHHHHHHHHH
Q psy195          289 WALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLR-KLTVGGLLAALS  367 (691)
Q Consensus       289 ~~~~~q~~s~~~~~~~~~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~-~i~iG~ll~~~s  367 (691)
                      ++.+.++......+..++++..  +.+...+.-...++.+-.++..++...+.+++..+.+.++... ++.-+.++++++
T Consensus       251 ~ifw~~~~Q~~s~~~~qa~~m~--~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la  328 (654)
T TIGR00926       251 PMFWALFDQQGSRWTLQATRMD--GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLA  328 (654)
T ss_pred             HHHHHHHhcchhHHHHHHHHhc--CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHH
Confidence            9999999998888888888776  5544445567788998899989998866678888885423333 367788899999


Q ss_pred             HHHHHHHHHhhhccccCCCCCCceeEEEEecCCCceeEecCCCccccccccccccccccccccccccccc-CCCCCC-Cc
Q psy195          368 FVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAAL-FEPSTS-CP  445 (691)
Q Consensus       368 ~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~  445 (691)
                      .+..++++....+..+..|..+....+..+..+|....+.   ..+..+.-   .++.    ..++.+.. +-.+.. ..
T Consensus       329 ~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~  398 (654)
T TIGR00926       329 ALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICD---FSVLSKRV---LPHD----VYLHLDKKNTSGDQGLFT  398 (654)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcce---EEEEecCC---cccc----cccccCcccccccccccc
Confidence            9888889988888888889999999999999999965431   01111100   0000    00000000 000000 00


Q ss_pred             cccccc-ceeeee-cc---CCcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCcccc
Q psy195          446 YVLNKT-FQSSVL-GA---DGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQD  520 (691)
Q Consensus       446 ~~~~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (691)
                      ..-..+ ....+- +.   .+.+.+.....+ ...+++ ++.+.-++.                ++++++....+.+...
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~  460 (654)
T TIGR00926       399 TKSSAKGWTLTYDLSYDGACGLTGNCPKTTD-AHELEP-KISYVLLLS----------------QGGYQLTANTDKPTDA  460 (654)
T ss_pred             ccccccccceEEEEeccccccccCCCCcccc-ceeecC-CceEEEEEe----------------cCCcceeeeeecCccC
Confidence            000000 000010 00   000000000000 011110 111111110                0000011110111100


Q ss_pred             CCCCCCc-------ccce-----eecCcccceeeecccchhhhccccccCCc-eeEEeeccCC-------------C-Cc
Q psy195          521 IDLPTGA-------CYTE-----YIEGIPAGVYEVRSENKVLKSNMELQDDN-VYVLNLNTEA-------------S-PE  573 (691)
Q Consensus       521 ~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~-~~  573 (691)
                      .+..+..       ...+     ..+..++.  .+++.  . ..+......| .|+.....+.             + .+
T Consensus       461 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  535 (654)
T TIGR00926       461 KTEKGMGSVRLVNTLNGEFGMISLCTSDSDS--VTPCN--P-RDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGI  535 (654)
T ss_pred             CCCCCCceEEEEecCCCcceeeEEecccCcc--cccCC--c-ccccccccccceeeeeecccccccccccccccccccce
Confidence            0000000       0000     00011100  00000  0 0000111111 3332221110             0 00


Q ss_pred             ccc--------ccc--cccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHH
Q psy195          574 HRT--------ARL--LKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVA  643 (691)
Q Consensus       574 ~~~--------~~~--~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~  643 (691)
                      .+.        .+.  ++..++++.+..|+++|+-.+.+.++....++.++..-+.++++++.-+.+|.+..+.+++...
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~  615 (654)
T TIGR00926       536 YYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNL  615 (654)
T ss_pred             EEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            111        122  2245577788899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhccce
Q psy195          644 IVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYK  680 (691)
Q Consensus       644 ~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  680 (691)
                      ++..+..++....+++.|+.++.+.++++.+++.-++
T Consensus       616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~  652 (654)
T TIGR00926       616 IVVVIAEFENFSVQAAEFFLFASLMLVVMAIFSILAY  652 (654)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887653

>PRK09952 shikimate transporter; Provisional

Probab=99.23  E-value=6.2e-10  Score=124.65  Aligned_cols=182  Identities=10%  Similarity=0.045  Sum_probs=126.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      ++++.+.......++..+++|....+++.|+++.+|++......+.....+...++.+++|+++||+ ||||++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3444444444455666778888888999999989999988766666667777788899999999997 999999888766


Q ss_pred             HHHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHH-HHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFS-INAGSLIST  175 (691)
Q Consensus        98 ~~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~-~nlG~~igp  175 (691)
                      ..++.+.+.... ..+.    ...+.+..++.+++.+...+..+++.+|.+|    .+.|+.+.++.+.. ..+|+.++|
T Consensus       326 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p----~~~r~tg~g~~~~~~~~lgg~~~p  397 (438)
T PRK09952        326 GTLSAFPFFMALEAQSI----FWIVFFSIMLANIAHDMVVCVQQPMFTEMFG----ASYRYSGAGVGYQVASVVGGGFTP  397 (438)
T ss_pred             HHHHHHHHHHHHHcCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----cchhHHHHhHHHHHHHHHHHHHHH
Confidence            554443332211 1000    0333445566678888888888999999998    67888888875544 458889999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .+.+++.+..     ..+|...+....+..+++++..+
T Consensus       398 ~i~g~l~~~~-----~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        398 FIAAALVTYF-----GGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHH
Confidence            9999886620     13477777666655555554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.23  E-value=2.7e-08  Score=113.97  Aligned_cols=147  Identities=14%  Similarity=0.171  Sum_probs=109.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q psy195           44 LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV  123 (691)
Q Consensus        44 l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i  123 (691)
                      ...++.+++|-++ ...++.....++..+..++.|.|+|.| |||..++.+.++.++|.++.+.+..  .     ..++.
T Consensus        66 ~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~--~-----~~~ia  136 (599)
T PF06609_consen   66 ILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN--M-----NTFIA  136 (599)
T ss_pred             HHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc--H-----HHHHH
Confidence            4467778888864 456778889999999999999999998 9999999999999999999887632  1     77889


Q ss_pred             HHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q psy195          124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       124 ~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      +-.+.|+|.|... .....++|..|    .+.|.....+..........+++.++..+..       +.+||+.|++..+
T Consensus       137 g~~l~GvgaG~~~-~~~~~isEl~p----~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~~~~~i  204 (599)
T PF06609_consen  137 GMVLYGVGAGVQE-LAALAISELVP----NKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIFYIFII  204 (599)
T ss_pred             HHHHHHHhhHHHH-HHHHHHHHhcc----cchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHHHHHHH
Confidence            9999999987765 45666899776    6777766655544433333344554444332       4689999998887


Q ss_pred             HHHHHHHH
Q psy195          204 LMFLAIIV  211 (691)
Q Consensus       204 l~~l~~l~  211 (691)
                      ...++++.
T Consensus       205 ~~~i~~vl  212 (599)
T PF06609_consen  205 WSGIALVL  212 (599)
T ss_pred             HHHHHHHH
Confidence            66655543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.22  E-value=1.9e-09  Score=123.98  Aligned_cols=152  Identities=14%  Similarity=0.046  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT  121 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l  121 (691)
                      ......+++++|++..+.+++.++.. ...++.+++|+++||+ |||+++.++.+++.+|.++.+++..... ....+.+
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~i-~~s~~~l  123 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEVI-EGSVVRL  123 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcccc-cCcHHHH
Confidence            34555678899999999998887643 3345677889999998 9999999999999999998887521100 0111788


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccCCCCchhHHHHH
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI-STFITPIFRHDMQCFGQEACFPLAFGV  200 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i-gp~i~~~l~~~~~~~g~~~~w~~~F~i  200 (691)
                      ++.|++.|+|.+...+.....+.++||     ++||.+.++...+.++|+++ ++...+++..         +|+..|++
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-----~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~---------~~~~~fl~  189 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-----SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD---------NTSAYFFF  189 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHH
Confidence            999999999999988888888999995     67899999999999999975 4544444432         36666666


Q ss_pred             HHHHHHHHHH
Q psy195          201 PALLMFLAII  210 (691)
Q Consensus       201 ~~~l~~l~~l  210 (691)
                      .+++.++..+
T Consensus       190 l~vl~~vv~l  199 (591)
T PTZ00207        190 LMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHH
Confidence            5554444333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.22  E-value=8.8e-10  Score=119.45  Aligned_cols=170  Identities=15%  Similarity=0.100  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++.+....++...........++.|+.+++|.++.+++.+.....+...++.+++|+++||+ |||+++.++.++..+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            33333333333333444556788899888999999999988887777888899999999997 99999888766555544


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      ++.......       +.+++.+++.|++.|...+....+..|..|    + +++++.++++...++|..++|.+.+.+.
T Consensus       280 ~~~~~~~~~-------~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       280 TGLAADNSL-------WALLMLQLLNAIFIGILAGIGMLYFQDLMP----G-RAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----c-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433332111       555667778888888888888888888765    3 4678999999999999999999999887


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      +       ..+|+..|.+.++..+++.++.
T Consensus       348 ~-------~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       348 E-------RWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             H-------hccchhHHHHHHHHHHHHHHHH
Confidence            7       4578888888777666665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=1.4e-09  Score=119.90  Aligned_cols=163  Identities=10%  Similarity=-0.016  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTV  107 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~  107 (691)
                      ...++....++....++|.|+.+ .|++..+++.+.+.+.++..++.++.|+++||+ |||+.+.++.+...++.+++..
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            33344445566667778888865 799999999999999999999999999999997 9999988766555555444433


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy195          108 TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC  187 (691)
Q Consensus       108 s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~  187 (691)
                      ...  .     ..+.+..++.|++.++..+...++..|.+|    +++|++..++.+....+|..+||.+.+.+.+.   
T Consensus       305 ~~~--~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~---  370 (406)
T PRK11551        305 APS--F-----AGMLLAGFAAGLFVVGGQSVLYALAPLFYP----TQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL---  370 (406)
T ss_pred             cCc--H-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHcc----hhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc---
Confidence            211  1     445566677788877778888899999887    88999999999999999999999999988762   


Q ss_pred             cCCCCchhHHHHHHHHHHHHHH
Q psy195          188 FGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       188 ~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                         ..+|...+.+.....++++
T Consensus       371 ---~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        371 ---GRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             ---CCchHHHHHHHHHHHHHHH
Confidence               2345556655544444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.19  E-value=3.2e-10  Score=122.81  Aligned_cols=166  Identities=15%  Similarity=0.078  Sum_probs=123.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++.++......++....++....+++.|+++++|.+..+++.+.....++..++.+++|+++||+ |||+.+.++..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~  296 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA  296 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34466666666666777777888899999888999999999999999999999999999999997 99998876554443


Q ss_pred             HHH-HHHH-HhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHH-HHHHHHHHHHHHH
Q psy195          100 GGN-VLLT-VTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLF-YFSINAGSLISTF  176 (691)
Q Consensus       100 ig~-ill~-~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~-~~~~nlG~~igp~  176 (691)
                      +.. .+.. ....++.     ..+.++.++.+++.+...+...+++.|.+|    +++|+++.+.. .++..+|..++|.
T Consensus       297 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~g~~~~p~  367 (394)
T TIGR00883       297 LLAVPLLMALLDSGSF-----TLFFFLVLGLALIGGMYTGPMGSFLPELFP----TEVRYTGASLAYNLAGAIFGGFAPY  367 (394)
T ss_pred             HHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHHHhhhHHHHHHHhCC----ccceeeEeeehhHhHHHHHhhHHHH
Confidence            322 2221 1111111     556667788888888888999999999887    77888888874 4555678889999


Q ss_pred             HHHHhhccccccCCCCc-hhHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEAC-FPLAFGVPA  202 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~-w~~~F~i~~  202 (691)
                      +++++.+       ..+ |+..+....
T Consensus       368 ~~g~l~~-------~~g~~~~~~~~~~  387 (394)
T TIGR00883       368 IAAALVA-------MTGDWYAIGYYLA  387 (394)
T ss_pred             HHHHHHH-------HcCcchhHHHHHH
Confidence            9999877       234 665554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0253|consensus

Probab=99.18  E-value=1.2e-08  Score=107.85  Aligned_cols=167  Identities=14%  Similarity=0.047  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy195           36 CYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNI  115 (691)
Q Consensus        36 ~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~  115 (691)
                      ........+..-+....|.+..++.++......+..+++...|.++|++ ||||...+..+...+...+-..  .|++  
T Consensus        92 m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~--spnf--  166 (528)
T KOG0253|consen   92 MEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGA--SPNF--  166 (528)
T ss_pred             HHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcC--CCCe--
Confidence            3334445555566677899999999999999999999999999999997 9999887775544443333222  3444  


Q ss_pred             chhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchh
Q psy195          116 PKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP  195 (691)
Q Consensus       116 ~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~  195 (691)
                         ..+.+.|.+.|+|.|+ .|...++-.|..|    ...|....-.. ....+|.++...+.-....       +.|||
T Consensus       167 ---~~L~~f~~l~~~g~gg-~pv~~~~yle~lp----~~~r~~~~V~~-~~waig~v~ea~law~vm~-------~~gwr  230 (528)
T KOG0253|consen  167 ---ASLCVFRALWGFGVGG-LPVDSAIYLEFLP----SSHRWLLTVMS-FFWAIGQVFEALLAWGVMS-------NFGWR  230 (528)
T ss_pred             ---ehhhHHHHHHhccCCC-ccHhHHHHHHhcc----CcCCCcchhHH-HHHHHHHHHHHHHHHHHHH-------hhhHH
Confidence               7789999999999999 7888888888776    44455444444 4556777777777766655       46798


Q ss_pred             HHHHHHHHHHHHH--HHHHHhhcccccccC
Q psy195          196 LAFGVPALLMFLA--IIVFIIGKPMYKINK  223 (691)
Q Consensus       196 ~~F~i~~~l~~l~--~l~~~~~~~~~~~~~  223 (691)
                      +..........+.  ...+..+++++.-.+
T Consensus       231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~  260 (528)
T KOG0253|consen  231 YLLFTSSTPLMFAARFLVWVYESPRFYLAK  260 (528)
T ss_pred             HHHHHHHhHHHHHHHHHhhcccCcchhhhc
Confidence            6655555433332  233445556654433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.18  E-value=1.4e-09  Score=121.15  Aligned_cols=183  Identities=10%  Similarity=0.049  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYD--------EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILS   95 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s--------~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~   95 (691)
                      +.+++..++..........+++.|+.+ .|.+        ....+.+.++..++..++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            334444444444444455667778754 4544        36678899999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHH-HHHHHHHHHH
Q psy195           96 IVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY-FSINAGSLIS  174 (691)
Q Consensus        96 il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~-~~~nlG~~ig  174 (691)
                      ++..++..++........   ....+++..++.|++.+...+....+++|.+|    +++|++.+++.+ ...++|.++|
T Consensus       289 ~~~~v~~~l~~~~~~~~~---~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p----~~~~g~~~g~~~~~~~~lg~~iG  361 (418)
T TIGR00889       289 VAWALRFGFFAYGDPEYF---GYALLFLSMIVYGCAFDFFNISGSVFVEKEVP----VHIRASAQGLFTLMCNGFGSLLG  361 (418)
T ss_pred             HHHHHHHHHHHHcCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHhhHHHHH
Confidence            888777666655311000   00456678889999999988999999999887    899999999997 5678999999


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          175 TFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       175 p~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      |.+++++.+..+..+ ..||+.+|.+.+++.+++.++++...
T Consensus       362 p~l~G~l~~~~g~~~-~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       362 YILSGVMVEKMFAYG-TFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHhcccc-CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999876311100 14699999887776665555444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12382 putative transporter; Provisional

Probab=99.17  E-value=1.5e-09  Score=119.05  Aligned_cols=160  Identities=18%  Similarity=0.170  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAID  111 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~  111 (691)
                      +...++..+..+.+.|+.+ .|++.  .+.....+.++..++.++.|++.||+ ||||.+.++..+..++.+++..... 
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~-  301 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAPT-  301 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHccc-
Confidence            3345555666777888764 56654  45666777888889999999999997 9999999888877777766554321 


Q ss_pred             CCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q psy195          112 PLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQE  191 (691)
Q Consensus       112 ~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~  191 (691)
                       .     ...+++.++.|++.+...+...+...+.+|    +++|++..++++...++|..++|.+.+++.+       .
T Consensus       302 -~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------~  364 (392)
T PRK12382        302 -A-----WVALAGAALTGAGCSLIFPALGVEVVKRVP----SQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------S  364 (392)
T ss_pred             -H-----HHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence             1     556678888899998888888888888776    8999999999999999999999999999887       4


Q ss_pred             CchhHHHHHHHHHHHHHHHHHH
Q psy195          192 ACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       192 ~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .||+..|.+.+++.++++++.+
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        365 FGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             hCchHHHHHHHHHHHHHHHHHH
Confidence            6799999888877666665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.17  E-value=1.3e-09  Score=119.90  Aligned_cols=164  Identities=11%  Similarity=0.048  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHh
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEK---TATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVT  108 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~---~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s  108 (691)
                      +.........++++.|+.+..+....   ..+.+..+..++..++.++.|+++||+ |||+.+.++.++..++.+++...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence            33344445566778887764433221   345566667788889999999999997 99999998887776666655443


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy195          109 AIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCF  188 (691)
Q Consensus       109 ~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~  188 (691)
                      ..+       +.+++.+++.|++.|...+...++..+..|    ++++++.+++++...++|..+||.+++.+.+     
T Consensus       309 ~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~-----  372 (408)
T PRK09874        309 QTP-------LQLGILRFLLGAADGALLPAVQTLLVYNSS----NQIAGRIFSYNQSFRDIGNVTGPLMGAAISA-----  372 (408)
T ss_pred             ccH-------HHHHHHHHHHHhhhHhhHHHHHHHHHHhCC----cccceeeehHHHHHHHHHHHhhHHHHHHHHh-----
Confidence            221       567778889999999999988888888555    7889999999999999999999999998877     


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          189 GQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       189 g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                        ..+|+..|.+.+++.+++.+..+.
T Consensus       373 --~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        373 --NYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             --hcchhHHHHHHHHHHHHHHHHHHH
Confidence              467999999888777766655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.17  E-value=3.1e-09  Score=116.47  Aligned_cols=155  Identities=14%  Similarity=0.212  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL  113 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~  113 (691)
                      ...+.....++|.|+++ .|.+..+++.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++.. . .   
T Consensus       213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-~---  285 (381)
T PRK03633        213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-Q---  285 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-h---
Confidence            33444555678888865 699999999999999999999999999999998 999999888777777655443 1 1   


Q ss_pred             CCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Q psy195          114 NIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEAC  193 (691)
Q Consensus       114 ~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~  193 (691)
                           ......+++.|++.+...|...+...|..|    +++++...+.+....++|.++||.+++++.+       ..+
T Consensus       286 -----~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~-------~~g  349 (381)
T PRK03633        286 -----AAMAPALFILGAAGFTLYPVAMAWACEKVE----HHELVAMNQALLLSYTVGSLLGPSFTAMLMQ-------NYS  349 (381)
T ss_pred             -----HHHHHHHHHHHHHHHhHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhC
Confidence                 233456677777777778888888888776    6677777888788889999999999999987       466


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy195          194 FPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       194 w~~~F~i~~~l~~l~~l~  211 (691)
                      |+..|.+.+++.+++...
T Consensus       350 ~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        350 DNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            888888766665554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.15  E-value=2.5e-09  Score=118.58  Aligned_cols=159  Identities=9%  Similarity=0.013  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy195           37 YYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIP  116 (691)
Q Consensus        37 ~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~  116 (691)
                      ..+...++|.|+++.+|++..+.|++.+...++..++.++.|+++||. ++++.+..+.++..++.+++.....  .   
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~--~---  312 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMPM--W---  312 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccch--H---
Confidence            345666788999887999999999999999999999999999999996 8888888887777777665544321  1   


Q ss_pred             hhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhH
Q psy195          117 KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPL  196 (691)
Q Consensus       117 ~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~  196 (691)
                        ....++.++.|++.+...+...+++.+.+|    ++.|++.+++++...++|..+||.+.+++.+       ..|++.
T Consensus       313 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~-------~~g~~~  379 (417)
T PRK10489        313 --ILAVLCLALFGYLSAISSLLQYTLLQTQTP----DEMLGRINGLWTAQNVTGDAIGAALLGGLGA-------MMTPVA  379 (417)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-------Hhchhh
Confidence              455677778888888877777888889776    8899999999999999999999999999887       356666


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy195          197 AFGVPALLMFLAIIVFII  214 (691)
Q Consensus       197 ~F~i~~~l~~l~~l~~~~  214 (691)
                      .+.+.++..++..++...
T Consensus       380 ~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        380 SASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            676655554444444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.14  E-value=2.7e-09  Score=115.05  Aligned_cols=178  Identities=12%  Similarity=0.047  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH-HHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI-VILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i-~ig~il~~   99 (691)
                      +.++..++..++....+.....+++.|+.+.+|.+..+++.+.+...++..++.+++|+++||+ |||+.. ........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4456666666677777778888899999999999999999999999999999999999999997 998611 11111111


Q ss_pred             HHHHHHHHh-hcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVT-AIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 ig~ill~~s-~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      ++.++.... ......  ......+...+.+.+..+..+...++.+|.+|    +++|++..++.+...++|..++|.+.
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       294 IAGLVLSLLMFATNYV--NIPYAALALVALGFFGLGAGAIGWALISDNAP----GNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhchhhhhHHHHHHHhhcC----hhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence            111111110 000000  00222233333333333367889999999887    88999999999999999999999999


Q ss_pred             HHhhccccccCCCCc-hhHHHHHHHHHHHHHHHHH
Q psy195          179 PIFRHDMQCFGQEAC-FPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~-w~~~F~i~~~l~~l~~l~~  212 (691)
                      +++.+       ..+ |+..|.+.++..+++.+..
T Consensus       368 g~l~~-------~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       368 GAIAA-------TTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhcc-------CCCchhHHHHHHHHHHHHHHHHH
Confidence            99877       345 8888887776665555443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.14  E-value=4.2e-10  Score=103.10  Aligned_cols=131  Identities=12%  Similarity=0.213  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhh
Q psy195           64 HIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFG  143 (691)
Q Consensus        64 ~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~  143 (691)
                      +.+.++..++.++.|+++||+ |||+.+..+..+..++.++......  .     +.+.+.+++.|++.+...+...++.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~g~~~~~~~~~~~~~~   76 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSSN--I-----TVLIIARFLQGFGAAFALVAGAALI   76 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            445678889999999999997 9999999998888877776655321  1     6677889999999999999999999


Q ss_pred             hccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          144 GDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       144 ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .|.+|    +++|++..++.+...++|..+++.+.+.+.+       ..+|+..|.+..+..+++.+...
T Consensus        77 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        77 ADIYP----PEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             HHHCC----hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc-------ccchHHHHHHHHHHHHHHHHHHh
Confidence            99887    7889999999999999999999999998876       46788888877665555544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.14  E-value=2.1e-09  Score=120.85  Aligned_cols=176  Identities=13%  Similarity=0.056  Sum_probs=118.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch--hHHH-HHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK--FLTI-VILSIV   97 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR--kk~i-~ig~il   97 (691)
                      +.+|...+..++....+++...++|.|+++..|++..+++.+...+.++..++.+++|+++||+ ++  |+.. .+...+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            3455555666666667778888999999988999999999999999999999999999999996 53  4322 222223


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH-HHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI-STF  176 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i-gp~  176 (691)
                      ..++.+++......+.     ....++.++.|.+..........+..|.+|    ++.|+++.++.+...++|+.+ +|.
T Consensus       332 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~~g~~  402 (452)
T PRK11273        332 VTIATIVYWLNPAGNP-----TVDMACMIVIGFLIYGPVMLIGLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASA  402 (452)
T ss_pred             HHHHHHHHHHhcccCh-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHcC----hhhhhhHHHHHHHHHHHHHHHhhhh
Confidence            3333333222111000     333344444444433322333456678776    889999999999888888654 799


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      +.+++.+       ..||+..|.+.++..+++++...
T Consensus       403 v~g~l~~-------~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        403 IVGYTVD-------FFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hHHHHHH-------HhcchHHHHHHHHHHHHHHHHHH
Confidence            9998877       46799899887776666654433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.14  E-value=3.4e-09  Score=118.50  Aligned_cols=177  Identities=11%  Similarity=-0.006  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch--hHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK--FLTIVILSIVYL   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR--kk~i~ig~il~~   99 (691)
                      .++.+.+..++....++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+|  ++......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            355555555555556667778899999888999999999999999999999999999999996222  222222111111


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+.+.......     .....+..+..|++............+|.+|    +++|++..++.+...++|.+++|.+.+
T Consensus       324 ~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~p~~~g  394 (434)
T PRK11663        324 LSVGSLWLMPFAS-----YVMQAACFFTIGFFVFGPQMLIGMAAAECSH----KEAAGAATGFVGLFAYLGAALSGYPLA  394 (434)
T ss_pred             HHHHHHHHccccc-----HHHHHHHHHHHHHHHhhHHHHHHHHHHhccc----HhhHHhHHHHHHHHHHHHHHHhcccHH
Confidence            1211111111110     0222233333343322222233456678776    889999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      ++.+       ..||+..|.+.+++.+++.+..+.
T Consensus       395 ~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        395 KVLE-------IWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHH-------hcccHHHHHHHHHHHHHHHHHHHH
Confidence            9887       467998888877776666554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.13  E-value=5.5e-09  Score=114.78  Aligned_cols=173  Identities=12%  Similarity=0.002  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++...+..++....+++...+++.|+.+..|++..+++.+.+.+.++..++.++.|+++||+ |||+. .++..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHH
Confidence            33334444444555566667788888888999999999999999999999999999999997 98765 44444444443


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      .++.... ++.     ..+++..++.|++.+...+...+.+.+..|     +.|+++.+++....++|..+||.+++.+.
T Consensus       285 ~~l~~~~-~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~g~~~G~~~~G~~~  353 (390)
T PRK03545        285 LLLLPAA-NSE-----WHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-----DATDVAMALFSGIFNIGIGAGALLGNQVS  353 (390)
T ss_pred             HHHHHHh-chH-----HHHHHHHHHHHHHHhcchHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322211 111     556667778888887777777777777543     47789999998889999999999999998


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      +       ..+++..|.+.+++.++++++....
T Consensus       354 ~-------~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        354 L-------HLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             h-------ccChhHHHHHHHHHHHHHHHHHHHH
Confidence            7       5789989988887777776665444

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.12  E-value=1.1e-09  Score=123.28  Aligned_cols=175  Identities=11%  Similarity=0.069  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc-CchhHHHHHHHHHHH-
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY-LGKFLTIVILSIVYL-   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~-lGRkk~i~ig~il~~-   99 (691)
                      .++..++..++..+++++...+++.|+++ +|++..+++.+.++..++..++.+++|+++||. .++++...++..+.. 
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            45555555666667777777888999864 799999999999999999999999999999983 144544444333222 


Q ss_pred             -HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 -GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 -ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                       ++.++......  .     +.+++.+++.|++.+...++..+++.|.+|    ++++++.+++++...++|.++||.++
T Consensus       321 ~l~~ll~~~~~~--~-----~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       321 GLTHLLCALAGD--Y-----TGLVIYCIFFGLSFGSVGALLFEVLMDLVG----AQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHhch--H-----HHHHHHHHHHHHHhchHHHHHHHHHHHHhh----HHHHhhHHhHHHHHHHHHHHccccce
Confidence             22233222211  1     566778889999999999999999999776    88899999999999999999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      +.+.+.      ..+|+..|++.+++.+++.+...+
T Consensus       390 G~l~~~------~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       390 GRLVDA------TKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             eeeehh------cCCcchHHHHhhHHHHHHHHHHHH
Confidence            988762      235888888888776666554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.12  E-value=7.6e-09  Score=113.57  Aligned_cols=168  Identities=9%  Similarity=0.001  Sum_probs=136.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++...+..++...+.....++.+.|+++ +|.+..+.|.+.+...++..++.++.|++.||+ |+|+.+.++.++..+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            445666666666677777778889999965 899999999999999999999999999999998 999999999999888


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY-FSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~-~~~nlG~~igp~i~~  179 (691)
                      ..++++.+..+       +.+++..++.|+..|...+....++.+. |    +++++++.+.+. ....+|..+++.++|
T Consensus       283 ~~~~~~~~~~~-------~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~----~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       283 RWAIIGAIEAF-------PLIFLLQILHCGTFAVCHLAAMRYIAAQ-P----GSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHhHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-C----HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777654332       6678889999999999999999999985 6    777888888876 466899999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      ++.+       ..++ ..|.+.+++.+++++
T Consensus       351 ~l~~-------~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       351 FIYP-------TLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHH-------hccH-HHHHHHHHHHHHHHH
Confidence            9987       3455 456665655555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.12  E-value=1.6e-09  Score=116.78  Aligned_cols=179  Identities=12%  Similarity=0.113  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcC-chhHHHHHHHH-HH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYL-GKFLTIVILSI-VY   98 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~l-GRkk~i~ig~i-l~   98 (691)
                      |.+|++.+..++..+.-|++..+.|+|+.+..|+|...+++..+.|-+++..+++++||+|||+. |||..+-+.+. ..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            56888889898888888999999999999999999999999999999999999999999999987 77765543332 22


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTFI  177 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~i  177 (691)
                      .++.+++..+..  .   +..+..+..+++|+-.-+-.-.+.....|..|    ++.-|++.|...++..+ |.+.+.+.
T Consensus       332 ~~~~~~~w~~~~--~---~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~p----K~AaGtA~Gf~Glf~Yl~Ga~~a~~~  402 (448)
T COG2271         332 TASLVLYWLAPN--G---SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVP----KKAAGTATGFVGLFAYLIGAALAGLP  402 (448)
T ss_pred             HHHHHHHHcCCC--c---cHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc----HhhccchhchhhhHHHHhhHHhcCCc
Confidence            333333333211  1   11556666777777666655666666778665    88899999999888888 88888888


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      .+++.+       ..||...|.+..+..+++.+++.+.
T Consensus       403 ~g~i~d-------~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         403 LGYIAD-------TWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             ceeeEe-------cCCCcchHHHHHHHHHHHHHHHHHH
Confidence            888776       4678888887766666666555544

>PRK11462 putative transporter; Provisional

Probab=99.10  E-value=5.8e-08  Score=109.59  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh----cCchhHHHH-HHHHHHHHHHH
Q psy195           29 NEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADT----YLGKFLTIV-ILSIVYLGGNV  103 (691)
Q Consensus        29 ~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr----~lGRkk~i~-ig~il~~ig~i  103 (691)
                      ..+...+.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||    + ||||..+ +|.+...++.+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~-Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRW-GKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCC-CCcchhHhHHHHHHHHHHH
Confidence            3444455556666789999999999999999999999999999999999999996    5 9876554 56667677666


Q ss_pred             HHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          104 LLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       104 ll~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      ++...  |....... ..+++..++..++..+...+..++.+|.-+   ++++|++..++...+.++|.++++.+...+
T Consensus        96 llf~~--p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~---d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462         96 LAYST--PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN---DPTQRISLQSWRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             HHHhC--CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65432  32222222 445556666788888888888899998765   689999999999999999988887765543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.09  E-value=3.3e-09  Score=120.15  Aligned_cols=148  Identities=14%  Similarity=0.072  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      +...++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++..++.++.........     
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGGANV-----  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccccHH-----
Confidence            3557799999888999999999999999999999999999999997 9999988876655554443322211100     


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      +...+..++.+....+..+..+++..|.+|    +++|++.+++++...++|+.+||.+.+.+.+       ..+|+..+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~-------~~g~~~~~  435 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFD----TEQRAAGLGFTYNVGALGGALAPILGALIAQ-------RLDLGTAL  435 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCC----HHHhhcccchhhhhhhHHHHHHHHHHHHHhc-------cCChHHHH
Confidence            223333343333333345677888889777    8899999999999999999999999999877       45677666


Q ss_pred             HHHHH
Q psy195          199 GVPAL  203 (691)
Q Consensus       199 ~i~~~  203 (691)
                      .+.++
T Consensus       436 ~~~~~  440 (496)
T PRK03893        436 ASLSF  440 (496)
T ss_pred             HHHHH
Confidence            54443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.09  E-value=2.7e-09  Score=116.55  Aligned_cols=139  Identities=14%  Similarity=0.060  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL  113 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~  113 (691)
                      .....+...+++.|+.+++|++..+++.+.+...++..++.++.|+++||+ |||+.+.++.++..+........ .++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~  328 (405)
T TIGR00891       251 NLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAI-GANV  328 (405)
T ss_pred             HHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHh-CCch
Confidence            334445566789999989999999999999999999999999999999997 99999888766543322222111 1111


Q ss_pred             CCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          114 NIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       114 ~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                           +.+.++.++.++..+...+..++++.|.+|    +++|++.+++.+...++|..++|.+.+++.+
T Consensus       329 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       329 -----AVLGLGLFFQQMLVQGIWGILPKHLGEYFP----TDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             -----HHHHHHHHHHHHHHccchhhHHHHHhhhCC----cchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 445556566777667777788889999777    8889999999999999999999999999987

>TIGR00897 2A0118 polyol permease family

Probab=99.09  E-value=1.1e-08  Score=113.21  Aligned_cols=177  Identities=11%  Similarity=0.057  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH-HHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV-ILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~-ig~il~~   99 (691)
                      |.++...+..++...++++...++|.|++ ++|++..+++.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            34555566666777788888889998885 5899999999999999999999999999999997 9988764 2333333


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+.+.....  ......+..++..++.|++.+...+ ..+...+..     +++|++++++.+...++|..++|.+.+
T Consensus       300 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-----~~~~g~~~g~~~~~~~lg~~~gp~i~g  371 (402)
T TIGR00897       300 IFTLALYYIPQ--HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-----PKHKGAAMSVLNLSAGLSAFLAPAIAV  371 (402)
T ss_pred             HHHHHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-----cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222221110  0000014455677777888777644 345555643     357999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      .+.+       ..||...|.+.+++.+++.++..+
T Consensus       372 ~l~~-------~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       372 LFIG-------FFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHh-------hcchHHHHHHHHHHHHHHHHHHHH
Confidence            9887       457888888877766666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.09  E-value=1.9e-09  Score=119.76  Aligned_cols=160  Identities=9%  Similarity=0.032  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy195           35 FCYYGMRTVLSLYMHLVL---LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAID  111 (691)
Q Consensus        35 ~~~y~i~~~l~~yl~~~l---g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~  111 (691)
                      ..+......++.|+.+.+   +.+..+.|.+.++..++..++.+++|+++||+ |||+.+.++.++..++.+++.+...+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~~~  315 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFATGP  315 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcccH
Confidence            333344445777776543   66777889999999999999999999999997 99999999888888877776654322


Q ss_pred             CCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccccCC
Q psy195          112 PLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSL-FYFSINAGSLISTFITPIFRHDMQCFGQ  190 (691)
Q Consensus       112 ~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~-~~~~~nlG~~igp~i~~~l~~~~~~~g~  190 (691)
                             +.+++.+++.+++.+...+....++.+.+|    ++.++...+. ++...++|.++++.+.+++.+       
T Consensus       316 -------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------  377 (420)
T PRK09528        316 -------LEVSILKLLHAFEVPFLLVGVFKYITLNFD----VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------  377 (420)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------
Confidence                   667778888999888888888888899777    6677776554 566778999999999999987       


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Q psy195          191 EACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       191 ~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      ..||+..|.+.+++.++..++.+
T Consensus       378 ~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        378 SIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHH
Confidence            46799999887766555544433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.08  E-value=2.2e-07  Score=98.68  Aligned_cols=161  Identities=16%  Similarity=0.199  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL  113 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~  113 (691)
                      |...-++-+ +..-+.+++|+|.+.+|.+.++-.+...+.++++.+++.|+ |..+.+..++++..+|.++=.....   
T Consensus        25 R~~itsvgP-LL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~~~---   99 (395)
T COG2807          25 RPAITSVGP-LLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLGGL---   99 (395)
T ss_pred             chhhhhhhh-hHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcccH---
Confidence            444444434 44456778999999999999999999999999999999997 9999999999998888887665433   


Q ss_pred             CCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Q psy195          114 NIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEAC  193 (691)
Q Consensus       114 ~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~  193 (691)
                           ..++.+-.+.|.|.+......|+++-+.||     ++.+..++.|..+.++|+++++.+...+.+.      ..+
T Consensus       100 -----~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-----k~~~~mtglYs~sl~~~aaLaa~lavpla~~------~~g  163 (395)
T COG2807         100 -----PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-----KRVGLMTGLYSTSLGAGAALAAALAVPLAQH------SGG  163 (395)
T ss_pred             -----HHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-----cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh------hcc
Confidence                 778899999999999999999999999996     7789999999999999999999998888763      347


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q psy195          194 FPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       194 w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      |+.+...=+...+++++++++-
T Consensus       164 W~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         164 WRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9987777666667777776654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.05  E-value=6e-09  Score=112.54  Aligned_cols=183  Identities=12%  Similarity=0.067  Sum_probs=138.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .+..|.+.+..+...-+|-++...++.|++++++.+..++|.+...+.....+..+++|+||||+ |.+|++++....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            56778888888777777778999999999999999999999999999999999999999999998 99999988888777


Q ss_pred             HHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      ++..++..... ....... ..++...+.+++..|.-+..+..++...||     ++.|...++.....++|++.-|...
T Consensus       296 ~~~~~l~~~~~-~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-----~~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         296 LAAALLSLFLT-GFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-----KETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHcccc-ccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-----hhhhHHHHHHHHhccccccchhHHH
Confidence            77776655421 0100011 444444555566666666667777777774     5788899999889999988888888


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      +...+.      ..++..+|.+.....+++.++.+..
T Consensus       370 g~~~~~------tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         370 GVSLDL------TGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHh------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            877663      3358888888777666666554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.05  E-value=1.1e-08  Score=114.33  Aligned_cols=144  Identities=13%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH-HHH-H
Q psy195           30 EFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV-LLT-V  107 (691)
Q Consensus        30 ~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i-ll~-~  107 (691)
                      .++....++++..++|.|+++.+|++..++++......++..++.+++|+++||+ |||+.+.++.++..+... .+. .
T Consensus       247 ~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~  325 (434)
T PRK15075        247 VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALSWL  325 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777888899999988999999999988888999999999999999997 999988776544332221 111 1


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Q psy195          108 TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSIN-AGSLISTFITPIFRH  183 (691)
Q Consensus       108 s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~n-lG~~igp~i~~~l~~  183 (691)
                      ...++.     ....+..++.+++.|...+...++..|.+|    ++.|+.+.++.+...+ +++.++|.+.+++.+
T Consensus       326 ~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p----~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        326 VAAPSF-----ARMLAVELWLSFLYGSYNGAMVVALTEVMP----AEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HcCCch-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHCC----CCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            111111     233344555667777777777788899887    7889999988655444 457779999998876

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.04  E-value=1.7e-08  Score=112.68  Aligned_cols=163  Identities=11%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHH--Hhh
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLT--VTA  109 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~--~s~  109 (691)
                      +....+|+...++|.|+.+.+|++..+++...++..++..++.++.|+++||+ |||+.+.++.++..+......  ...
T Consensus       254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
T PRK10406        254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQN  332 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34667888889999999988999999999888888888888899999999997 999988776654433322211  111


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccc
Q psy195          110 IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTFITPIFRHDMQCF  188 (691)
Q Consensus       110 ~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~i~~~l~~~~~~~  188 (691)
                      ....     ...+....+..++.+...+...++.+|.||    ++.|++++++.+...++ ++..+|.+.+.+..     
T Consensus       333 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp----~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-----  398 (432)
T PRK10406        333 VSSP-----YAAFGLVMCALLIVSFYTSISGILKAEMFP----AQVRALGVGLSYAVANALFGGSAEYVALSLKS-----  398 (432)
T ss_pred             CCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-----
Confidence            1000     111112222223344444567788899998    88999999998876554 23447777776543     


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHH
Q psy195          189 GQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       189 g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                        ...|...+...++..+++++.
T Consensus       399 --~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        399 --IGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             --hCCCcHHHHHHHHHHHHHHHH
Confidence              223555555544444444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1.1e-07  Score=105.47  Aligned_cols=150  Identities=17%  Similarity=0.237  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh----cCchhHH-HHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADT----YLGKFLT-IVILSIVYLGGN  102 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr----~lGRkk~-i~ig~il~~ig~  102 (691)
                      ...+...+.+..+..++..|+++..|+++..+|.+..+.-+.-++.-|+.|.++||    + ||+|- ++++.+...+..
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~-GrfRP~lL~g~ip~~i~~   97 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRW-GRFRPWLLWGAIPFAIVA   97 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccc-ccccHHHHHHhHHHHHHH
Confidence            34455566666777889999999999999999999999999999999999999997    5 77664 555667667766


Q ss_pred             HHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          103 VLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       103 ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++..+  |.....+. ...++--++.++++.....+..++.++..+   ++++|.+..+|...+.++|.++...+.+.+
T Consensus        98 ~l~F~~--p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~---d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211          98 VLLFIT--PDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ---DPQERASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             HHHHcC--CCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554  22222222 556677778889999998888898888765   789999999999999999988777666554


Q ss_pred             hc
Q psy195          182 RH  183 (691)
Q Consensus       182 ~~  183 (691)
                      ..
T Consensus       173 v~  174 (467)
T COG2211         173 VK  174 (467)
T ss_pred             HH
Confidence            43

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.01  E-value=1.1e-08  Score=113.72  Aligned_cols=162  Identities=14%  Similarity=0.040  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC---c
Q psy195           40 MRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNI---P  116 (691)
Q Consensus        40 i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~---~  116 (691)
                      +..+.+.+ .+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.+++..........   .
T Consensus       303 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       303 IMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             hHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            33344444 456899998889999999999999999999999997 999999998887777766665321111100   0


Q ss_pred             hhHHHHHHHHHHHHHhh-chhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchh
Q psy195          117 KRTFTLVGLLLIAVGTG-GIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP  195 (691)
Q Consensus       117 ~~~~l~i~~~l~gig~G-~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~  195 (691)
                      ......+...+.+.+.+ ...+....+.+|.+|    ++.|+...+..+...++|.+++|.+.+.+.+       ..+|+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~-------~~~~~  449 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFP----LSLRPKGISIAVAANWLANFIVGFLFPTMLE-------SIGVG  449 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccccCeehhhhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcc
Confidence            01222222233332222 234566677789887    8889999999999999999999999998876       45688


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy195          196 LAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       196 ~~F~i~~~l~~l~~l~~~~  214 (691)
                      ..|++.+++.++++++...
T Consensus       450 ~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       450 GVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             ceehhHHHHHHHHHHHHhe
Confidence            8887777666555554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.01  E-value=2.9e-08  Score=112.15  Aligned_cols=183  Identities=16%  Similarity=0.177  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchh--HHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKF--LTIVILSIVY   98 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRk--k~i~ig~il~   98 (691)
                      |.....++..++.+-+...+......|.++++|++..+...+..+..+.+.++++++|++.||+ |.|  ++++++.+++
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            4455556666777788888889999999999999999999999999999999999999999997 999  8888877666


Q ss_pred             HHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPL-NIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        99 ~ig~ill~~s~~~~~-~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      .+..+.-.+...+.. .....+.+++.-++.|+..|..++..-++.++..|    +++.+.+++++.+..-..+.+||++
T Consensus       360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP----~g~e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIP----PGREAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC----CchhhHHHHHHHHHHHHHHHHHHHH
Confidence            333222222101111 01112677888889999999999999999999887    7778999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      .+.+.+.      ..+-|.++....++.+++++++..
T Consensus       436 ~g~i~~~------tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  436 FGLITDA------TGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHH------hCCchhHHHHHHHHHHHHHHHHhh
Confidence            9988774      334677887777777777666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.00  E-value=2.8e-08  Score=113.09  Aligned_cols=178  Identities=10%  Similarity=0.062  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFH-IWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~-~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      +.+.+..++...+.+....+.+.|+.+.+|++..+.+.+.. ...++..++.+++|+++||+ ||||.+.++.++..++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33333334444555555667788888889999999999875 55679999999999999998 99998877666555544


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      +.+........   ....+.+..++..++.|...+...++..+..+    ++.+++.+++.+...++|..+++.+.|++.
T Consensus       304 l~~~~l~~~~~---~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~----~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~  376 (491)
T PRK11010        304 AGYWLLSITDK---NLYSMGAAVFFENLCGGMGTAAFVALLMTLCN----KSFSATQFALLSALSAVGRVYVGPVAGWFV  376 (491)
T ss_pred             HHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222111000   00333444555455555555666677777665    566688889888889999988888889888


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +       ..||+..|.+.+++.+++++.....+
T Consensus       377 ~-------~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        377 E-------AHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             H-------HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            7       46799888887777777665554443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.97  E-value=2.9e-08  Score=106.52  Aligned_cols=152  Identities=10%  Similarity=0.045  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMR-TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~-~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +.++.++...++....+.+.. ...|.|.++.+|.+..+.+.+.....++..++.++.|+++||+ |||+.+..+.++..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            344445555555555555555 6678888777999999999999999999999999999999997 99999888766666


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++..+...... +.     +.+++..++.|++.+...+...+++.|.+|    +++|++..+..+...++|..++|.+++
T Consensus       289 ~~~~~~~~~~~-~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~g  358 (365)
T TIGR00900       289 LAILVVGLTPP-NF-----PLFLVLWFAIGVGYGPINVPQGTLLQRRVP----AELLGRVFGAQFSLSHAAWPLGLILAG  358 (365)
T ss_pred             HHHHHHHhhch-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555544321 11     667788889999999999999999999777    899999999999999999999999999


Q ss_pred             Hhhc
Q psy195          180 IFRH  183 (691)
Q Consensus       180 ~l~~  183 (691)
                      .+.+
T Consensus       359 ~l~~  362 (365)
T TIGR00900       359 PLAD  362 (365)
T ss_pred             HHHH
Confidence            8876

>PRK10504 putative transporter; Provisional

Probab=98.97  E-value=4.2e-08  Score=110.49  Aligned_cols=154  Identities=10%  Similarity=0.008  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+...++..++...++.......|.|++..+|.++.+++++.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445555556666666555556677888877999999999999888888888999999999998 999999988887777


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      +..++........    ...+.+..++.|++.+...+....+..+.+|    ++.++..+++.++...+|..+|+.+++.
T Consensus       340 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~g~~ig~~i~g~  411 (471)
T PRK10504        340 VSLLFMLVALLGW----YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLP----DNLASSGNSLLSMIMQLSMSIGVTIAGL  411 (471)
T ss_pred             HHHHHHhcccccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----HHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            7665554321100    0334455667788888888888888888776    7899999999999999999999999887


Q ss_pred             hhc
Q psy195          181 FRH  183 (691)
Q Consensus       181 l~~  183 (691)
                      +.+
T Consensus       412 ll~  414 (471)
T PRK10504        412 LLG  414 (471)
T ss_pred             HHH
Confidence            654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.96  E-value=1.9e-08  Score=111.73  Aligned_cols=165  Identities=13%  Similarity=0.101  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHH-HHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHL-VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLT-IVILSIVYL   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~-~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~-i~ig~il~~   99 (691)
                      .+|...+..++...+++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            45556666677777888888999999976 3578889999999999999999999999999997 87774 333333333


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++......+       ...+++..+.++|.....+.......|.+|    +++|+.++++.+...++|.+++|.+.+
T Consensus       322 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       322 AGWLLASATDHN-------LIQLLGIIMASMGSFSAMAIFWTTPDQSIS----LQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HHHHHHHhcCCH-------HHHHHHHHHHHHHhhhhhhHHHhhcccccc----hHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            333222111110       222222233333333333333344456565    889999999999999999999999998


Q ss_pred             HhhccccccCCCCchhHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      .+.+.      ..+|+.+|.+.+++
T Consensus       391 ~i~~~------~g~~~~~~~~~~~~  409 (412)
T TIGR02332       391 ILKDA------TGSFNSGLWFVAAL  409 (412)
T ss_pred             ccccc------CCCCchhHHHHHHH
Confidence            88763      23588888765553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.95  E-value=1e-07  Score=105.29  Aligned_cols=153  Identities=7%  Similarity=-0.153  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++...+...+....++......|.|+.+.+|+++.+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44444444444444445555678888888999999999888878888899999999999998 99999999888777777


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      .++.......  ......++++.++.|+|.+...+........ .    +++++|+..+..++...+|..+|+.+.+.+.
T Consensus       296 ~~~~~~~~~~--~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~----~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        296 LLAALATVIS--SHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-S----SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             HHHHHHHHcc--cccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-h----ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7665532100  0001456678888899988877666554433 1    2478899999999999999999999999886


Q ss_pred             c
Q psy195          183 H  183 (691)
Q Consensus       183 ~  183 (691)
                      +
T Consensus       369 ~  369 (406)
T PRK15402        369 L  369 (406)
T ss_pred             c
Confidence            6

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.95  E-value=4.4e-08  Score=106.66  Aligned_cols=176  Identities=14%  Similarity=0.136  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.++......++...+.|...+++..++++..|++....+++...+.++..++.+++|+++||  +.|+++.....+..+
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            456666777778888889999999999999999999999999999999999999999999999  788888877676666


Q ss_pred             HHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ..+.+.+.. .+       +...+..++.|++.+........-.++.     .++.++.+.+++....|+|..+|.++++
T Consensus       289 ~~l~l~~~~~~~-------~~~~~~~~~wg~a~~~~~~~~~~~~a~~-----~p~~~~~a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         289 ALLALTFTGASP-------ALALALLFLWGFAFSPALQGLQTRLARL-----APDAADLAGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             HHHHHHHhcchH-------HHHHHHHHHHHHHhhhhhhHHHHHhccc-----CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555542 21       3444555555555555444444444442     2467888999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      .+.+       +.|+....++.+++.++++++.+...+
T Consensus       357 ~v~~-------~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         357 LVLD-------ALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHH-------hhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9887       567888888888887777766655443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.94  E-value=9e-08  Score=105.00  Aligned_cols=149  Identities=9%  Similarity=0.036  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.+.+..++...++.+...+++.|+. +.|++..+.|.+.+...++..+..++.|++.||+ |+|+.+.++.++..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            34555555455555555566678888985 5899999999999988888889999999999998 999999988888777


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY-FSINAGSLISTFITP  179 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~-~~~nlG~~igp~i~~  179 (691)
                      +.+++.....+       +.+++..++.|++.+...+....+..++ +    ++++++..+.+. ....+|..+||.++|
T Consensus       283 ~~~~~~~~~~~-------~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~g~~ig~~i~G  350 (382)
T PRK11128        283 RWGLMGSTTAL-------PWLIVIQILHCGTFTVCHLAAMRYIAAR-P----GSEVIRLQALYSALAMGGSIAIMTVLSG  350 (382)
T ss_pred             HHHHHHhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-C----HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665544322       6677888899999998888888877774 3    455678888775 455778889999999


Q ss_pred             Hhhc
Q psy195          180 IFRH  183 (691)
Q Consensus       180 ~l~~  183 (691)
                      .+.+
T Consensus       351 ~l~~  354 (382)
T PRK11128        351 FLYQ  354 (382)
T ss_pred             HHHH
Confidence            9987

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.94  E-value=6.5e-08  Score=106.13  Aligned_cols=171  Identities=13%  Similarity=0.113  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      .+......++...+.+....+++.|+.+.+|+++.+++.+.+...++..++.++.|+++||+ |+|+.+.++.++..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            33333333333344444456677888878999999999999999999999999999999997 99999998887777776


Q ss_pred             HHHHHh-hcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          103 VLLTVT-AIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       103 ill~~s-~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      +++... ..+       +...+..++.++|.+...+.......+..+   +++.++...  .+...++|..+||.+++++
T Consensus       280 ~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l  347 (382)
T PRK10091        280 LMLFFFGGMK-------TASLIFAFICCAGLFALSAPLQILLLQNAK---GGELLGAAG--GQIAFNLGSAIGAYCGGMM  347 (382)
T ss_pred             HHHHHHHhhH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHhCC---cchHHHHHH--HHHHHHHHHHHHHHHhHHH
Confidence            554332 111       334445555566655544444433333222   244455443  3566789999999999998


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+.      ..+|+..+.+.+++.+++...+
T Consensus       348 ~~~------~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        348 LTL------GLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHc------ccCcchHHHHHHHHHHHHHHHH
Confidence            773      3568888887766655554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.94  E-value=3.5e-08  Score=111.11  Aligned_cols=153  Identities=16%  Similarity=0.068  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++...+..++..+++++...++|.|+++.+|+++.+++.+.....++..++.+++|++.||+ |||+.+.++.++..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence            44445555666677777788899999999999999999999999999999999999999997 99999999988877777


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      .++.....+..   ....+....++.|+|.|...++......+.+|    +++++++.++.+...++|+.+|+.+.+.+.
T Consensus       336 ~~~~~~~~~~~---~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       336 YWRAFTFTPDT---PFLAIALPQFIRGFGMGCFFMPLTTIALSGLP----PHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHhccCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76653211111   01445666788899999888777777778666    889999999999999999999999988776


Q ss_pred             c
Q psy195          183 H  183 (691)
Q Consensus       183 ~  183 (691)
                      +
T Consensus       409 ~  409 (485)
T TIGR00711       409 T  409 (485)
T ss_pred             H
Confidence            5

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=98.93  E-value=4.2e-08  Score=106.55  Aligned_cols=145  Identities=12%  Similarity=-0.009  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV  103 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i  103 (691)
                      +.+.+..++....+++...++| ++.+++|++..+++.+.+...++..++.+++|+++||+ |||+.+....+..++..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  330 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence            3344444455566666666777 66677899999999999999999999999999999997 998554433333222222


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          104 LLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       104 ll~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      +......+       ...++..++.|++.+...+...++.+|.+|    +++|++.+++.+....+|..+||.+.+++
T Consensus       331 ~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       331 VGSTLFSP-------TLLLLLGAIAGFFVNGGQSGLYALMALFYP----TAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHhhCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            22211111       556677788999999999999999999887    89999999999999999999999998865

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.93  E-value=3.1e-08  Score=110.80  Aligned_cols=175  Identities=11%  Similarity=0.006  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+|...+..++.....++...++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            345555555555666678888999999988999999999999999999999999999999997 7654333343222221


Q ss_pred             ---HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHH-HHHHHH
Q psy195          102 ---NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGS-LISTFI  177 (691)
Q Consensus       102 ---~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~-~igp~i  177 (691)
                         .+++......+.     ....+..++.|++.............|.+|    ++.|+++.++.+...++|+ ++||.+
T Consensus       331 ~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~gg~~~gp~l  401 (438)
T TIGR00712       331 TIAVIVYWMNPAGNP-----LVDMICMIVIGFLIYGPVMLIGLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASAI  401 (438)
T ss_pred             HHHHHHHHhcCCCch-----HHHHHHHHHHHHHHccHHHHHHHHHHHhcC----hhheeeehhhhchHHHhhhhhhcchh
Confidence               111111111100     222333344444432222222345678776    8899999999988888764 679999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      .+.+.+       ..||...|.+..+..+++.+..+
T Consensus       402 ~G~l~~-------~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       402 VGYTVD-------FFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             HHHHHH-------hccchHHHHHHHHHHHHHHHHHH
Confidence            998877       45688888776665555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.92  E-value=9.1e-08  Score=102.40  Aligned_cols=159  Identities=11%  Similarity=0.015  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLV--LLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~--lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .+++..+..++...+--++..+++.|+.+.  +|+++.+++...+.+.++..++.+++++++||+ |++|.+.++.++.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            344444444444444557778899999854  799999999999999999999999999999997 99999988887777


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.++......        .....+.++.|++.+...|...+...+.+|    + +.+.+.++. ....+|++++|.+.|
T Consensus       220 ~~~~l~~~~~~--------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~----~-~~~~asai~-~~~~~Gg~i~P~l~G  285 (310)
T TIGR01272       220 LLSIGAALTHG--------YVAMWFVLALGLFNSIMFPTIFSLALNALG----R-HTSQGSGIL-CLAIVGGAIVPLLQG  285 (310)
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----h-hhhhhHHHH-HHHHhcchHHHHHHH
Confidence            76654443221        222346668899999999999998888775    2 233444443 456789999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPA  202 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~  202 (691)
                      .+.+       ..+.+.+|++..
T Consensus       286 ~lad-------~~g~~~a~~v~~  301 (310)
T TIGR01272       286 SLAD-------CLGIQLAFALPV  301 (310)
T ss_pred             HHHH-------hccchHHHHHHH
Confidence            8877       355677776543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.92  E-value=3.6e-08  Score=112.24  Aligned_cols=152  Identities=10%  Similarity=-0.040  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+....+..++...++++...++|.|+++.+|+++.++|.......++..++.+++|++.||+ |||+.+..+.++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS  338 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344444555556666777778899999999999999999999999999999999999999998 9999998888887777


Q ss_pred             HHHHHHhhc-CCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          102 NVLLTVTAI-DPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       102 ~ill~~s~~-~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      .+++..... ++.     +...+..++.|+|.|...+.......+..|    +++++.+.+.++...++|+.+|+.+.+.
T Consensus       339 ~~~l~~~~~~~~~-----~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~lG~~~G~ai~g~  409 (495)
T PRK14995        339 FYGLAMTDFSTQQ-----WQAWGLMALLGFSAASALLASTSAIMAAAP----PEKAAAAGAIETMAYELGAGLGIAIFGL  409 (495)
T ss_pred             HHHHHHhcCCCch-----HHHHHHHHHHHHhHHHHHHHHHHHHHhcCC----HHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            766544211 111     445667788899999988888888888665    8899999999999999999999999887


Q ss_pred             hhc
Q psy195          181 FRH  183 (691)
Q Consensus       181 l~~  183 (691)
                      +.+
T Consensus       410 i~~  412 (495)
T PRK14995        410 LLS  412 (495)
T ss_pred             HHH
Confidence            755

>KOG2563|consensus

Probab=98.92  E-value=8e-07  Score=96.90  Aligned_cols=195  Identities=13%  Similarity=0.094  Sum_probs=125.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH
Q psy195           16 QPKYPKAVFFIVINEFCERFCY---YGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV   92 (691)
Q Consensus        16 ~~~~~r~~~~l~~~~~~~~~~~---y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~   92 (691)
                      .|.++|....++...+.. +..   +.-......|.++.+| +...+-+...+|++.+....+.+-|+.|++ |-|.+.+
T Consensus        37 ~rVy~rRW~vLl~~slL~-~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l  113 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLN-FSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL  113 (480)
T ss_pred             cccchhHhHHHHHHHHHH-hcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence            345566655554444332 111   1111234556666677 777788999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHH
Q psy195           93 ILSIVYLGGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGS  171 (691)
Q Consensus        93 ig~il~~ig~ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~  171 (691)
                      ++.++.++|..+-.++..|.+.+.-. .....|-.+.+.++-.+...-+-..+-+|+    +++|..+...-.++..+|.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~----~~qra~A~~~~v~~n~LGv  189 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFP----PDQRAIATVLGVMGNPLGV  189 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCC----cchhhhhhhHHHhcchHHH
Confidence            99999999999887775542221111 244556666666655544443445567888    8889999888888888888


Q ss_pred             HHHHHHHHHhhccccccCCCCchhH--HHHHHHHHHHHHHHHHHhhccc
Q psy195          172 LISTFITPIFRHDMQCFGQEACFPL--AFGVPALLMFLAIIVFIIGKPM  218 (691)
Q Consensus       172 ~igp~i~~~l~~~~~~~g~~~~w~~--~F~i~~~l~~l~~l~~~~~~~~  218 (691)
                      ++|.++.+.+..+.++- +...|..  .|+...++..+.+++..+.++.
T Consensus       190 avg~llppilV~~~~~~-~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~  237 (480)
T KOG2563|consen  190 AVGFLLPPILVPSSKDS-EDNSWLFFTLFLGVECLAALLLALVLFVFTK  237 (480)
T ss_pred             HHHhhccceecCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88888877765532110 1345653  3554444444444444444433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.92  E-value=4.2e-08  Score=111.18  Aligned_cols=175  Identities=10%  Similarity=0.053  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH-----HHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL-----TIVILSIV   97 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk-----~i~ig~il   97 (691)
                      +|.+.+..++.....++...++|.|+.+++|++..+++.+.+++.++..++.+++|+++||+ |||+     ........
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            34444443333444455667789999888999999999999999999999999999999997 8762     22211111


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      .+.+..++......+.     ....+..++.+++.+...+...++..+..     ++.++...++...+.++|+.+++.+
T Consensus       333 ~l~~i~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        333 TLGGVFCIWLGRANSL-----GAAIVVMILFSIFVQAACGATFGIVPFVS-----RRSLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             HHHHHHHHHhcccchH-----HHHHHHHHHHHHHHHHhhhhhcccCcccC-----hhhchhhhhhhhccccHHHHHHHHH
Confidence            1112111111111100     33344455556655555555555555533     4678999998777666677666655


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      .+ ...       ..+|+.+|.+.+++++++.++.++.+
T Consensus       403 ~~-~~~-------~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        403 FF-TGS-------SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HH-hcC-------CccHhhHHHHHHHHHHHHHHHHHhee
Confidence            33 111       34688899888877777766665554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.90  E-value=1.1e-07  Score=105.32  Aligned_cols=133  Identities=16%  Similarity=0.064  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q psy195           38 YGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPK  117 (691)
Q Consensus        38 y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~  117 (691)
                      +.+..++|.|+.+ .|++..+.+.+.+...++..++.+++|+++||+ |||+.+..+.++..++.+++......      
T Consensus       248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~------  319 (426)
T PRK12307        248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQD------  319 (426)
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHccc------
Confidence            3456678888875 699999999999999999999999999999997 99999988877666555444322111      


Q ss_pred             hHHHHHHHHHHHHH--hhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          118 RTFTLVGLLLIAVG--TGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       118 ~~~l~i~~~l~gig--~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                       ....++.++.+++  ..+..+..+.++.|.+|    ++.|+++.++.+...++|+.++|.+.+++.+
T Consensus       320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        320 -NYLLLGACLFGLMATNVGVGGLVPKFLYDYFP----LEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             -cHHHHHHHHHHHHHhcccHhHHHHHHHHHhCc----HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence             1122233333332  23344567788889887    8899999999999999999999999999876

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.89  E-value=1.2e-07  Score=104.09  Aligned_cols=174  Identities=11%  Similarity=-0.076  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTG-LCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      ++..+...++...+......+.+.|+.+ .|++..+.|.+...... ...++.+++|++.||+ |+|+.+.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444444555556666666778888875 79999999998888764 5667789999999997 9999998877655333


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .+............ .....+....+.+++.|...+...+...+..+   +++.+++.++..+...++|..+||.+++.+
T Consensus       288 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l  363 (390)
T TIGR02718       288 ALLWFAQAAFWLAP-GIAVAWSCSAFGSLITGITSVAIYTAFMRFAG---DGDQAGTDVTAVQSTRDLGELIASSIAGYL  363 (390)
T ss_pred             HHHHHHHHHcccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222111100000 00223334444556677777777777777554   237889999999999999999999999999


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      .+       ..||+..|.+.+++.++++
T Consensus       364 ~~-------~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       364 TD-------RFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HH-------HHccHHHHHHHHHHHHHHH
Confidence            87       4568888887666555544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00896 CynX cyanate transporter

Probab=98.89  E-value=1.2e-07  Score=102.58  Aligned_cols=151  Identities=13%  Similarity=0.046  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCc-hhHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLG-KFLTIVILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lG-Rkk~i~ig~il~~   99 (691)
                      +.++.+.+..++....+++...++|.|+++ .|++..+++.+.+...++..++.++.|+++||+ | ||+++.++.++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV-KDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHH
Confidence            345555555555567777888889999875 799999999999999999999999999999997 5 5556667777777


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+.+......       ... ...++.|++.|...+...+...+..+   ++++++...++.+...++|.+++|.+.+
T Consensus       275 ~~~~~~~~~~~~-------~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~gp~~~G  343 (355)
T TIGR00896       275 VGLCGLLFAPMH-------GLW-AWALVLGLGQGGAFPLALTLIGLRSR---QAAQAAALSAMAQSIGYLLAALGPLFVG  343 (355)
T ss_pred             HHHHHHHHhhhh-------HHH-HHHHHHHHhhhhHhHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655543211       212 24567899999988887777766443   3567788888888888899999999999


Q ss_pred             Hhhcc
Q psy195          180 IFRHD  184 (691)
Q Consensus       180 ~l~~~  184 (691)
                      ++.+.
T Consensus       344 ~l~~~  348 (355)
T TIGR00896       344 VLHDI  348 (355)
T ss_pred             HHHHH
Confidence            98773

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG4686|consensus

Probab=98.89  E-value=6.8e-08  Score=98.78  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=124.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHH
Q psy195           15 EQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVIL   94 (691)
Q Consensus        15 ~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig   94 (691)
                      ..+.....+|++.++..+..++.+-....-+.++++.+|+|+..++.+.+.....+.+.+++.|.++|++ ||+-....+
T Consensus       258 dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~  336 (459)
T KOG4686|consen  258 DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVAS  336 (459)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHH
Confidence            3445566788887777666565555555678899999999999999999999999999999999999998 998876665


Q ss_pred             HH-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy195           95 SI-VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI  173 (691)
Q Consensus        95 ~i-l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i  173 (691)
                      .. ...++...++++.         +.-+++..++|+.+.+...+..+.++-..|    .++.|++++..+...|+|-++
T Consensus       337 a~~~tl~~H~~l~Ft~---------lsPy~~m~~lGLsysllAcslWP~va~~vp----E~qLGTaygf~qsIqNLgla~  403 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFTF---------LSPYTSMTFLGLSYSLLACSLWPCVASLVP----EEQLGTAYGFIQSIQNLGLAF  403 (459)
T ss_pred             HHHHHHHHhhhHHhhh---------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCC----HHHhcchHHHHHHHHhhhhhH
Confidence            44 4455666666543         234677888888888776667777777776    788999999999999999999


Q ss_pred             HHHHHHHhhc
Q psy195          174 STFITPIFRH  183 (691)
Q Consensus       174 gp~i~~~l~~  183 (691)
                      .|++++.+.+
T Consensus       404 i~Iiag~i~d  413 (459)
T KOG4686|consen  404 IPIIAGFIAD  413 (459)
T ss_pred             Hhhhhheeec
Confidence            9999999877

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.88  E-value=4.2e-06  Score=89.57  Aligned_cols=150  Identities=17%  Similarity=0.190  Sum_probs=99.7

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q psy195           50 LVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIA  129 (691)
Q Consensus        50 ~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~g  129 (691)
                      ++.|+++.+.+.+...-...+.+..++.|.++||+ ||||..++.++++.++++.--...   +     ..++++|++.|
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~~~---~-----~~L~~GRvlgG  132 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHSSN---Y-----PVLLLGRVLGG  132 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhccc---c-----HHHHHHHHHHH
Confidence            57899999999999999999999999999999998 999999999999988886544333   3     88999999999


Q ss_pred             HHhhchhhhhhhhhhccCCC-cchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHH
Q psy195          130 VGTGGIKPCVSSFGGDQFIV-PEQSAQLEKFFSLFY-FSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFL  207 (691)
Q Consensus       130 ig~G~~~~~~~~~~ad~fp~-~~~~~~rg~~~~~~~-~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l  207 (691)
                      +++.....+--++......+ .-+++..+..++... +...+-++++..++-++.+.   +  ..+-..+|..+.++.++
T Consensus       133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~---~--~~g~vaPF~~a~~~l~~  207 (354)
T PF05631_consen  133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW---F--GFGPVAPFDAAIVLLAV  207 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH---h--CCCCcchHHHHHHHHHH
Confidence            99999888777765542210 111333444444332 11222222233333333331   1  12235678777776666


Q ss_pred             HHHHHH
Q psy195          208 AIIVFI  213 (691)
Q Consensus       208 ~~l~~~  213 (691)
                      +.++..
T Consensus       208 ~~~~I~  213 (354)
T PF05631_consen  208 AAVLIL  213 (354)
T ss_pred             HHHHHH
Confidence            655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.88  E-value=3e-08  Score=107.32  Aligned_cols=173  Identities=11%  Similarity=0.150  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      .+...++..++.+=+..++......|....+|++..+...+-....+.+.++++++|+|+||+ |.|+++.++.+++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            555555666666666667777888999999999999999999999999999999999999997 9999999998888777


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      ++...+...+       .-+++.-++.|...|..++..=++.++..|    +++-+++++++.+....++.+||++.+.+
T Consensus       332 ~~~~~~~~~~-------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp----~~k~~~fFglyaltgra~S~~gp~lv~v~  400 (438)
T COG2270         332 ALYLIFLEGE-------LDFWILGLLVGTSLGGAQASSRSYLARLVP----KGKEGRFFGLYALTGRAASFLGPFLVAVI  400 (438)
T ss_pred             HHHHHHcccc-------HHHHHHHHHHHHhcchHHHHHHHHHHHhCC----CccccceeehhhhhhhHHHHHHHHHHHHH
Confidence            6655554332       556667788899999999999999999887    78889999999999999999999999987


Q ss_pred             hccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+.      ..+-|.++....++..++++++
T Consensus       401 t~i------Tg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         401 TQI------TGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHH------hcchhhHHHHHHHHHHhhHhhE
Confidence            663      3346777666565555555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.86  E-value=1e-07  Score=105.01  Aligned_cols=170  Identities=9%  Similarity=0.059  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVL---LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~l---g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++.+++..++....+......++.|+.+.+   +.+....|.+.++..+...++.++.|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            344444333433444445456788887654   56667788888888888899999999999997 99999999888877


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSL-FYFSINAGSLISTFIT  178 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~-~~~~~nlG~~igp~i~  178 (691)
                      ++..+......+       +.+++..++.|++.+...+....+..+.++    ++.++...+. ++....+|+.+++.+.
T Consensus       296 l~~~~~~~~~~~-------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       296 VRIIGSSFATTA-------LEVVILKMLHAFEVPFLLVGCFKYITSQFD----VRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             HHHHHHHhcCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            777665543222       556777888888877665555566666554    5555665554 5578899999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +++.+       ..||+.+|.+.+++.++..++
T Consensus       365 G~l~~-------~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       365 GNMYD-------SIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHH-------hcccHHHHHHHHHHHHHHHHH
Confidence            99987       467898988877766555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.85  E-value=5.5e-08  Score=104.72  Aligned_cols=161  Identities=10%  Similarity=0.093  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH--HHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI--VYL   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i--l~~   99 (691)
                      .++.+.+..++......++..+++.|+.+.+|++..+++.+.+.+.++..++.+++|+++||+.+||+.......  ...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            445555555566666667778899999999999999999999999999999999999999985234433222111  111


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++..........+     .....+..++.|+..+...+....+..|.+|    +++|+++.++.+...++|..++|.+.+
T Consensus       297 ~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       297 VSLLVYWLNPAAN-----PLMDLICLFALGFLVYGPQMLIGVIASELAP----KKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             HHHHHHhcCcchh-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcC----cchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence            1111111110110     0334455555665555555666778889776    889999999999999999999999999


Q ss_pred             HhhccccccCCCCchhHHH
Q psy195          180 IFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F  198 (691)
                      .+.+       ..||+..|
T Consensus       368 ~l~~-------~~g~~~~f  379 (379)
T TIGR00881       368 YLAD-------GFGWAGAF  379 (379)
T ss_pred             HHHH-------hhcccccC
Confidence            9887       45676543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.85  E-value=8.5e-08  Score=106.59  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.+++..++...+++......+.|.+..++ +....+.+.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            445555555666666665544444555544455 566677777888899999999999999998 999999999888877


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+++.+... +.     ..+.+..++.+++.+...+...++++|..+.   .++++++|..++.+.+...+|..+++.+
T Consensus       300 ~~~~~~~~~~-~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i  373 (437)
T TIGR00792       300 GYLIFFFAGS-NL-----PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFL  373 (437)
T ss_pred             HHHHHHHcch-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            7766654321 01     4556677788899999889999999997651   1235567999999999999999999999


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      .+.+.+
T Consensus       374 ~g~ll~  379 (437)
T TIGR00792       374 VGLILG  379 (437)
T ss_pred             HHHHHH
Confidence            998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.84  E-value=2.9e-07  Score=100.00  Aligned_cols=148  Identities=12%  Similarity=0.127  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++...+...+....++....+.|.|+.+.+|+++.+++.+.....++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33334444444455566666778888888999999999999999999999999999999997 99999998887777776


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTFIT  178 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~i~  178 (691)
                      +++.....+...  ....+++..++.|+|.+...+.......|.+|     +++++..+..+..... |++.++.++
T Consensus       287 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       287 VLLEITAILGLG--SWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-----HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            665543211100  00344555667888888888888888888553     4678888887776654 555555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10133 L-fucose transporter; Provisional

Probab=98.84  E-value=1.9e-07  Score=104.73  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYM-HLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl-~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      +...+..++...+.++...+++.|+ ++.+|+++.+++.....+.++..++.+++|+++||+ |||+++.++.++..++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            3334444555566666667788886 557899999999999999999999999999999997 99999988877666555


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      ++..+...        ...+.+..+.|+|.+...|+..+...+.++     ++.+.+.++..+ ..+|+.++|.+.+.+.
T Consensus       340 ~~~~~~~~--------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-----~~~~~as~l~~~-~~~g~~~~~~i~G~l~  405 (438)
T PRK10133        340 LISAFAGG--------HVGLIALTLCSAFMSIQYPTIFSLGIKNLG-----QDTKYGSSFIVM-TIIGGGIVTPVMGFVS  405 (438)
T ss_pred             HHHHHcCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----hhhccchhHHhH-HhccchHHHHHHHHHH
Confidence            44433211        222456778899999999999999999775     223444444433 3357777888888876


Q ss_pred             ccccccCCCCc-hhHHHHHHHHHHHH
Q psy195          183 HDMQCFGQEAC-FPLAFGVPALLMFL  207 (691)
Q Consensus       183 ~~~~~~g~~~~-w~~~F~i~~~l~~l  207 (691)
                      +       ..| -+.+|.++.+..+.
T Consensus       406 ~-------~~g~~~~~~~v~~~~~~~  424 (438)
T PRK10133        406 D-------AAGNIPTAELIPALCFAV  424 (438)
T ss_pred             H-------hccchHHHHHHHHHHHHH
Confidence            6       344 56777665544333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.84  E-value=2.1e-07  Score=104.81  Aligned_cols=180  Identities=17%  Similarity=0.125  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH--------H
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI--------V   92 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i--------~   92 (691)
                      +.+|...+..++...+++....++|.|+.+.+|++..++++..++..++..++.+++|+++||+ ++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            4567777777788888888889999999999999999999999999999999999999999996 654211        1


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy195           93 ILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSL  172 (691)
Q Consensus        93 ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~  172 (691)
                      .+......+..++........    ....++...+.+.+.+...+.......|..     ++.+|...++.+...++|+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~l~~~  410 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYLSAA----FYLTIIILTLANAVSSGPLAGVLINSLDLA-----PRFLGFIKGITGLPGFIGGL  410 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHhhhhhhhhhhchhhcC-----hhHHHHHHHHHHHHHHHHHH
Confidence            111111111111111111100    022333444444444444444444444533     35899999999999999999


Q ss_pred             HHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          173 ISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       173 igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      ++|.+.+++.+..   + ..+|...|.+.+++.+++.++...
T Consensus       411 i~p~l~g~~~~~~---~-~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       411 IASTLAGNILSQD---S-KNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHhhheeeCCC---C-chHHHHHHHHHHHHHHHHHHHeee
Confidence            9999988876520   0 134888888887777776655443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.83  E-value=9.8e-08  Score=119.31  Aligned_cols=149  Identities=15%  Similarity=0.083  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEK-TATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~-~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      ++..++..++.....+....+++.|+.+.+|++.. .++++.+...++..++.+++|+++||+ ++++.+.++.++..++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence            34444444444444555667789999999999999 999999999999999999999999997 9999888887777776


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .+++.....  .     +.++++.++.|++.++..+...+++.+..|    ++.|++++++.++..++|.++++.+++.+
T Consensus       313 ~~~~~~~~~--~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        313 LFLLPTAPS--L-----ASVLVLFFLFGFSAGLFIVPLNALIQFRAP----EKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHhhh--H-----HHHHHHHHHHHHHHHHhhHHHHHHHhhcCC----ccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            666654321  1     556677888899999988888999999776    88999999999999999998888777765


Q ss_pred             hc
Q psy195          182 RH  183 (691)
Q Consensus       182 ~~  183 (691)
                      ..
T Consensus       382 ~~  383 (1146)
T PRK08633        382 SG  383 (1146)
T ss_pred             HH
Confidence            43

>KOG2325|consensus

Probab=98.82  E-value=3.6e-07  Score=101.83  Aligned_cols=159  Identities=15%  Similarity=0.192  Sum_probs=126.2

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch-hHHH
Q psy195           14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHL-VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK-FLTI   91 (691)
Q Consensus        14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~-~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR-kk~i   91 (691)
                      ++-+.+||++++..+..+...+.++...+..-.|+++ +.+-+...-|+++++..++..++.+..|+-+.|. |+ |+-+
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl  105 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL  105 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence            3445678999999888888877777666666778764 3677778889999999999999999999999997 75 7778


Q ss_pred             HHHHHHHHHHHHHH-HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q psy195           92 VILSIVYLGGNVLL-TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAG  170 (691)
Q Consensus        92 ~ig~il~~ig~ill-~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG  170 (691)
                      +.|.++.++|.++. ++...|+-   ..+.+.++|++.|+|.|.. +..-+|+++    .+..++|.++++....+..+|
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~---~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~----~s~~~dR~rA~a~~~~~~vlg  177 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNG---VKYLMLVARILTGVGVGNF-AVLRAYIAD----ASTVEDRPRAFAATSGGFVLG  177 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHcCcCcccH-HHHHHHHHh----ccCccchHHHHHHhhhHHHHH
Confidence            88999999999998 55544431   1288999999999998875 567888998    455778888888887777778


Q ss_pred             HHHHHHHHHHh
Q psy195          171 SLISTFITPIF  181 (691)
Q Consensus       171 ~~igp~i~~~l  181 (691)
                      ..+||.+...+
T Consensus       178 ~ilGp~~q~~f  188 (488)
T KOG2325|consen  178 IILGPTIQLAF  188 (488)
T ss_pred             HHHhHHHHHHH
Confidence            88887766544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.82  E-value=3e-07  Score=105.16  Aligned_cols=169  Identities=10%  Similarity=0.107  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHH
Q psy195           26 IVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLL  105 (691)
Q Consensus        26 l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill  105 (691)
                      ++...++..+....+...+|.+..+.+|.++...|++.+++.+|+.++.++.+++.+++ ++++.+..+.+++.++++.+
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence            33333333444445556788999999999999999999999999999999999999997 99999988888777777776


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy195          106 TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDM  185 (691)
Q Consensus       106 ~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~  185 (691)
                      +++...       +...++.++.|++.........+..-+..|    ++.||+.++.+++....+..+|.++.|.+.+  
T Consensus       302 al~~~~-------~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P----~~~~GRv~si~~~~~~g~~~lGsll~G~la~--  368 (524)
T PF05977_consen  302 ALSPSF-------WLALIALFLAGAAWIIANSSLNTLVQLSVP----DWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD--  368 (524)
T ss_pred             hcchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            665322       666777888898888887777777777555    9999999999999999999999999999877  


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          186 QCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       186 ~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                           ..|.+..+.++++.++++.++..
T Consensus       369 -----~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  369 -----HFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             -----HhCHHHHHHHHHHHHHHHHHHHH
Confidence                 45677777777665555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.82  E-value=5.1e-07  Score=99.75  Aligned_cols=167  Identities=12%  Similarity=-0.016  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.++......++...++++...+++.++.+++|++..+++.+...+.++..++.++.|++.||. +|+..+. +.++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHH
Confidence            3344444444444555555556664444567899999999999999999999999999999995 5554444 3333333


Q ss_pred             -HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 -GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       101 -g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                       +.++......+       +.+.++.++.|++.+...+..++++.+..|     +++++..+......++|..+|+.+++
T Consensus       294 ~~~~l~~~~~~~-------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~~~G~~l~G  361 (394)
T PRK10213        294 SALVLTLWGSDK-------IVATGVAIIWGLTFALVPVGWSTWITRSLA-----DQAEKAGSIQVAVIQLANTCGAAIGG  361 (394)
T ss_pred             HHHHHHHHhhhH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33332222211       556677888899999999988888887664     33456666667778899999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLA  208 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~  208 (691)
                      ++.+       ..|++..+..++++.++.
T Consensus       362 ~l~~-------~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        362 YALD-------NIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHh-------ccChhhHHHHHHHHHHHH
Confidence            9987       456777777665544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.82  E-value=1e-05  Score=87.94  Aligned_cols=130  Identities=12%  Similarity=0.103  Sum_probs=95.1

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCc-----hhH-HHHHHHHHHHHHHHHHHHhh--cCC----CCC
Q psy195           48 MHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLG-----KFL-TIVILSIVYLGGNVLLTVTA--IDP----LNI  115 (691)
Q Consensus        48 l~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lG-----Rkk-~i~ig~il~~ig~ill~~s~--~~~----~~~  115 (691)
                      +..+++++....+..++.....+. ..+..|+.||+. +     ||- =+..|.++...|..+.+.+.  ...    ...
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            345789999999988877776655 688999999997 6     444 34556666666655554442  111    011


Q ss_pred             chh---HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          116 PKR---TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       116 ~~~---~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      +..   ....++..+.|+|.+...++..++++|..|    +++|++..++.+...-+|.+++..+.+.+.+
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~----e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP----EERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            111   344556667888998999999999999655    9999999999999999999999999887765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.81  E-value=3.8e-07  Score=102.74  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=108.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q psy195           43 VLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTL  122 (691)
Q Consensus        43 ~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~  122 (691)
                      +.|.+ .+.+|++...++.......++..++.+++|+++||+ |||+.+.++.++..++.+++.........   .....
T Consensus       293 ~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~~---~~~~~  367 (479)
T PRK10077        293 YAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQAP---GIVAL  367 (479)
T ss_pred             HHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCcc---cHHHH
Confidence            33444 356888887777777778888899999999999998 99999999998888887776543211110   02333


Q ss_pred             HHHHHHHHHhhc-hhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHH
Q psy195          123 VGLLLIAVGTGG-IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVP  201 (691)
Q Consensus       123 i~~~l~gig~G~-~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~  201 (691)
                      .+.++.+.+.+. ..|...++.+|.+|    ++.|+.+.++.+...++|.++++.+.+.+... +..-+..+|+..|++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p----~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~  442 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFP----NAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-SWLVAHFHNGFSYWIY  442 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCC----hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-cchhhhccCccHHHHH
Confidence            344445555543 34677899999887    88999999999999999999887776654310 0000035677777776


Q ss_pred             HHHHHHHHHHH
Q psy195          202 ALLMFLAIIVF  212 (691)
Q Consensus       202 ~~l~~l~~l~~  212 (691)
                      +++.++++++.
T Consensus       443 ~~~~~~~~~~~  453 (479)
T PRK10077        443 GCMGVLAALFM  453 (479)
T ss_pred             HHHHHHHHHHH
Confidence            65555444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.78  E-value=1.5e-07  Score=117.83  Aligned_cols=172  Identities=13%  Similarity=0.012  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.++...+..++..+.+.++..++|.|+.+.+|.+..++|++.+.+.++..++.+++|+++|+. ++++.+.++.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            3455555555555666667778899999999999999999999999999999999999999986 777766666555544


Q ss_pred             HHHHHHHhhc----CCC--------C-CchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAI----DPL--------N-IPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus       101 g~ill~~s~~----~~~--------~-~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      +.+.+.+...    +..        . ....+.+.++.++.|++.|...+...+++.+..|    ++.||++++..++..
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~G~v~g~~~~~~  379 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWAN----PAHRARVIAANNVLN  379 (1140)
T ss_pred             HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCC----cccceeeeHHHHHHH
Confidence            4443332100    000        0 0011566778888999999999999999999776    899999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q psy195          168 NAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       168 nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      .+|..+++++.+.+...      ..++...|.+.++
T Consensus       380 ~~~~~ig~~~~g~l~~~------~~~~~~~~~~~~~  409 (1140)
T PRK06814        380 AAFMVAGTIILALLQAL------GFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHh------ccCHHHHHHHHHH
Confidence            99999999998887641      2345555554444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.73  E-value=9.6e-05  Score=83.77  Aligned_cols=114  Identities=17%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHH-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchh
Q psy195           58 TATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSI-VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIK  136 (691)
Q Consensus        58 ~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~i-l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~  136 (691)
                      ..+...++..+...+..|+.|-++|+- |+||.++.... +..+.+.++.+. .|.-    .....+..++..++.+...
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~----~~~~~~l~iia~v~~~~~~  144 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFV-SPGQ----WWLALVLFIIANVGYEASN  144 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHh-Ccch----HHHHHHHHHHHHHHHHHHH
Confidence            345677888888889999999999997 88777665544 334445555443 1211    0222333334456777777


Q ss_pred             hhhhhhhhccCCCcchhhhH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          137 PCVSSFGGDQFIVPEQSAQL--------------------------EKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       137 ~~~~~~~ad~fp~~~~~~~r--------------------------g~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      ....+++.|.-+    ++++                          ++..++-+...++|+++...++..+
T Consensus       145 vfyna~LP~la~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~  211 (477)
T PF11700_consen  145 VFYNAYLPDLAR----PEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLL  211 (477)
T ss_pred             HHHHHHhHhhcC----CChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888665    3333                          7888888788888888877766554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.72  E-value=7.5e-07  Score=99.95  Aligned_cols=181  Identities=9%  Similarity=0.020  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +..|++.+..++...+|.+...++|.|+++.+  +...+.....+..+...++.+++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            34677777777766666677778999988754  444333334556778889999999999997 999999998876666


Q ss_pred             HHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCc------------------chhhhHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVP------------------EQSAQLEKFFS  161 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~------------------~~~~~rg~~~~  161 (691)
                      ........ .|.-. ... ..+.++.+.+.++.|.-++.+..++.+.|| .                  ..+++.|...|
T Consensus       329 ~~~~~~l~-lp~~~-~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G  405 (462)
T PRK15034        329 FSALLFLT-LPGTG-SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR-QITIYRVKMKGGSDEQAQREAVTETAAALG  405 (462)
T ss_pred             HHHHHHHH-hcccc-ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh-hhhhhcccccccchhHHhhHHHHHHHHHHH
Confidence            55332221 12100 011 444555555556666666666666666665 2                  01125678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          162 LFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       162 ~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      +......+|+++-|.+.+...+.      ..++..+|+...+..++++++.+
T Consensus       406 ~v~a~G~~Ggf~~p~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        406 FISAIGAVGGFFIPQAFGMSLNM------TGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHcccchhhHHHHHHHHH------cCCcHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888776766553      34577777776666555554433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.71  E-value=3.1e-07  Score=99.37  Aligned_cols=140  Identities=13%  Similarity=0.085  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWT-GLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~-i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      ++.+.+..++...+++....+++.|+++ +|++..+.+.+.++.. ++..++.+++|+++||+ |||+.+.++.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5555555566677888888889999987 9999999998887766 57789999999999997 9999998888777766


Q ss_pred             HHHHHHhh-cCC---CCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHH
Q psy195          102 NVLLTVTA-IDP---LNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSIN  168 (691)
Q Consensus       102 ~ill~~s~-~~~---~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~n  168 (691)
                      ..+..... ...   ...+..+.+..+.++.+++.+...+...++..+.+|    +++||+.+++++...+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       289 NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSN----PKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHh
Confidence            55444321 100   000011556667778899999999999999999887    9999999999877655

>PRK09848 glucuronide transporter; Provisional

Probab=98.71  E-value=2.3e-07  Score=104.01  Aligned_cols=156  Identities=17%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++...+..++...++.......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.+|.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455555555666666666656667777777888777666555555667788999999999997 999999999988888


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcc----hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPE----QSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~----~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +.+++.+....+.     +.+++..++.++|.+...+...++.+|..| ..    +.++.|..++.+.+...+|..+|+.
T Consensus       307 ~~~~~~~~~~~~~-----~~~~~~~~l~g~G~~~~~~~~~al~~~~~~-~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        307 GYLLFFWVSVWSL-----PVALVALAIASIGQGVTMTVMWALEADTVE-YGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             HHHHHHHcCchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence            8776654321111     556667788899999999999999999665 21    1234688999999999999999999


Q ss_pred             HHHHhhc
Q psy195          177 ITPIFRH  183 (691)
Q Consensus       177 i~~~l~~  183 (691)
                      +.+.+.+
T Consensus       381 i~g~~l~  387 (448)
T PRK09848        381 IPAFILG  387 (448)
T ss_pred             HHHHHHH
Confidence            8887654

>KOG3626|consensus

Probab=98.71  E-value=5.5e-06  Score=96.16  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhc---C----
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAI---D----  111 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~---~----  111 (691)
                      +.......-+.+.++++..+.|++.+.+-++..+...+..+.+-|. -|-|.+-+|++++.+|.++.++.++   +    
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            4445555667778999999999999999999999999999999996 8889999999999999999887631   0    


Q ss_pred             -------CCCC---------------------------ch---h-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchh
Q psy195          112 -------PLNI---------------------------PK---R-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQS  153 (691)
Q Consensus       112 -------~~~~---------------------------~~---~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~  153 (691)
                             .-.+                           .+   . .+++++.++.|+|.....+.-.+|+=|    ...+
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD----nvk~  268 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD----NVKK  268 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc----cccc
Confidence                   0000                           00   1 467888899999999988888888888    4557


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC------------CCCchhHHHHHHHHHHHHHHHHHHhhcccc
Q psy195          154 AQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG------------QEACFPLAFGVPALLMFLAIIVFIIGKPMY  219 (691)
Q Consensus       154 ~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g------------~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~  219 (691)
                      ++....+++.+....+|.++|.++++++.+..-++|            +-..|+.+|++++.+.++..+.++...+..
T Consensus       269 ~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  269 KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            788899999999999999999999987654322331            123599999999988888777666654443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.70  E-value=1.7e-06  Score=95.68  Aligned_cols=151  Identities=10%  Similarity=0.115  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhH
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWT-GLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLNIPKRT  119 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~-i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~~~~~~  119 (691)
                      ...+.++.+++|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+.... .+..    .+
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~~~----~~  304 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTPKH----LW  304 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCCc----HH
Confidence            34455677779999999999886654 46889999999999997 999988777766555544332211 1100    03


Q ss_pred             HHHHHH----HHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchh
Q psy195          120 FTLVGL----LLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFP  195 (691)
Q Consensus       120 ~l~i~~----~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~  195 (691)
                      .+.++.    +..+++.+...+....+..+.+|    .+.+    +.+....++|..++..+++.+.+       ..||+
T Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~G~l~~-------~~G~~  369 (402)
T PRK11902        305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQY----ALLSALASVGRVYVGPTSGYLVE-------AYGWP  369 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HhChH
Confidence            333333    34566677777777788888775    4433    33444446677666667888877       57799


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy195          196 LAFGVPALLMFLAIIVF  212 (691)
Q Consensus       196 ~~F~i~~~l~~l~~l~~  212 (691)
                      ..|.+.+++.++++++.
T Consensus       370 ~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        370 GFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888777666665443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.3e-06  Score=92.97  Aligned_cols=161  Identities=11%  Similarity=0.039  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      ..|.+.+-.-..+..||.+..++|.++. +.|+|..++|..++...+......+..-++++|.-.+|+......+++.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3566666677789999999999999997 479999999999999999999999999999998767888888888888888


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .+.+.+...        ...+...+++|+|.|+..+....++.+..+   ++++-++..++.+-...+=+++||++.|++
T Consensus       288 ~~G~~~~P~--------~~~~lw~~llG~G~G~~F~laL~li~~rs~---~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         288 LVGLLLAPG--------QLPILWALLLGLGQGGAFPLALTLILLRSS---DAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHhhh--------hHHHHHHHHHhCccchHHHHHHHHHHhhcC---ChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            887766432        222233588999999999999999988654   566677777777766666677799999999


Q ss_pred             hccccccCCCCchhHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGV  200 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i  200 (691)
                      .+.      ..+|+..+..
T Consensus       357 hDa------~gsw~~~~~~  369 (395)
T COG2807         357 HDA------TGSWSAPLVL  369 (395)
T ss_pred             HHh------cCChHHHHHH
Confidence            885      5678866554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.69  E-value=6.3e-07  Score=100.01  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+..+++..++...+........+.|.+..+|.+ ...+.+..+..++..++.++.++++||+ |+||++..+.++..+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            55667777777777777766677777777778877 5567777888999999999999999998 999999999999998


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+++.+...++.     +.+++..++.|++.|...+...++++|..+.   .+.+++.|..++.+.+...+|..+++.+
T Consensus       303 ~~~~~~~~~~~~~-----~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  303 GFLLLFFLGPGSP-----WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HHHHHHHHHhhhH-----HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            8887766531122     7788888999999999999999999998862   1223456899999999999999999998


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      .+.+.+
T Consensus       378 ~g~~l~  383 (428)
T PF13347_consen  378 VGLLLA  383 (428)
T ss_pred             HHHHHH
Confidence            887654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.68  E-value=7.2e-07  Score=98.75  Aligned_cols=132  Identities=8%  Similarity=0.012  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhH-hcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCch
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD-TYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPK  117 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaD-r~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~  117 (691)
                      ....++|.|+++..+ ++.+.+.+.+...++...+....+++.| |+ +.++.+..+.++..++.+++.....  .    
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~l~~~~~--~----  297 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRF-RLEHRLMAGLLIMSLSMFPIGMVSN--L----  297 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHhhh--H----
Confidence            344567888876555 6678888877777666555444455554 55 7677777777777777666554322  1    


Q ss_pred             hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          118 RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       118 ~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                       ..+.+..++.++|.+...|...++..+..|    +++|++.++++....++|..+||.+.+++.+
T Consensus       298 -~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        298 -QQLFTLICLFYIGSIIAEPARETLSASLAD----ARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHccHHHHHHhcCC----cccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence             445566677888888888888999999776    8999999999999999999999999999876

>PRK10054 putative transporter; Provisional

Probab=98.66  E-value=5.9e-07  Score=99.24  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHL--VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~--~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .++...+..++..+.+.....+++.|+..  +.+.+....+.+.....+......++.|++.||+ |+|+.+.++.++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            44444444555444444444556666643  3456667778787777777777788999999997 99999998888777


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+++..... +.     +.+.++.++.++|.+...|...+++.+..|    ++.|++.++... ...+|.++||.+++
T Consensus       286 ~~~~~~~~~~~-~~-----~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p----~~~~~~~~~~~~-~~~~G~~~Gp~~~G  354 (395)
T PRK10054        286 IGLVGFIFSGN-SL-----LLWGMSAAVFTVGEIIYAPGEYMLIDHIAP----PGMKASYFSAQS-LGWLGAAINPLVSG  354 (395)
T ss_pred             HHHHHHHHcch-HH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHhCC----cccceehHhHHH-HHHHHHHHHHHHHH
Confidence            77766654311 11     456677888999998888888888888665    777888887644 55689999999999


Q ss_pred             HhhccccccCCCCchhHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      .+.+       ..+....|.+.++.
T Consensus       355 ~l~~-------~~g~~~~~~~~~~~  372 (395)
T PRK10054        355 VILT-------TLPPWSLFVILALA  372 (395)
T ss_pred             HHHH-------HcChhhHHHHHHHH
Confidence            9987       34555666554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.65  E-value=5.4e-07  Score=102.77  Aligned_cols=170  Identities=15%  Similarity=0.075  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATV------------MFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~------------i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +..+.+|++..++|.+++ ++|++...++.            ...+..++..++.+++++++||+ |||++++++.++..
T Consensus       299 ~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~~  376 (502)
T TIGR00887       299 LLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFILT  376 (502)
T ss_pred             HHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHHH
Confidence            345567777777777775 57876542221            12334445666888999999997 99999988877766


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+++........   ....+....+...++..+..+....+.+|.+|    .+.|+++.++.+....+|++++|.+.+
T Consensus       377 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p----~~~R~~~~g~~~~~~~~~~~~~~~~~~  449 (502)
T TIGR00887       377 VLFFVLGFAYNHLS---THGFLAIYVLAQFFANFGPNATTFIVPGEVFP----TRYRSTAHGISAASGKAGAIIGQFGFL  449 (502)
T ss_pred             HHHHHHHHHHHhcc---hhHHHHHHHHHHHHHhcCCCchhhhhhhccCc----hhHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence            66555544311000   00111111111222222234556677899998    899999999999999999999999998


Q ss_pred             Hhhcccccc-C--CCCchhHHHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCF-G--QEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       180 ~l~~~~~~~-g--~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      ++.+..+.. |  ...++...|.+.++..+++.+
T Consensus       450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       450 YLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             hhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            876520000 0  012344556665555554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.64  E-value=2.2e-07  Score=99.22  Aligned_cols=141  Identities=22%  Similarity=0.349  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           26 IVINEFCERFCYYGMRTVLSLYMHLVLLYD-EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        26 l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s-~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      ++...++..+.++....+++.|+.+.+|++ ..+++.+.+...++..++.++.|+++||+ |+++.+.+......++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            444444555566678888999988899999 89999999999999999999999999997 9988887777666665555


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195          105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus       105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      +......    ......++..++.|++.+...+...++..+.+|    +++|++..+..+...++|+.+||
T Consensus       290 ~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  290 LLLLPFS----SSPVWLIIALFLIGFGFGIVFPILFSLIQELVP----PEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCCSHHH----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCH----TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHCC
Confidence            4433211    001455667788999999999999999999776    89999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00898 2A0119 cation transport protein

Probab=98.62  E-value=1e-06  Score=100.23  Aligned_cols=139  Identities=16%  Similarity=0.046  Sum_probs=97.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy195           51 VLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAV  130 (691)
Q Consensus        51 ~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gi  130 (691)
                      .++.+.....   ....+...++.+++++++||+ |||+.+.++.++..++.+++........     ....+..++.++
T Consensus       352 ~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~  422 (505)
T TIGR00898       352 NLGGNIYLDL---FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPVDLY-----FLRTALAVLGKF  422 (505)
T ss_pred             ccCCChHHHH---HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHHH
Confidence            3455543333   344566778889999999997 9999999988877777666554321100     333444555666


Q ss_pred             HhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHH
Q psy195          131 GTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       131 g~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      +.+...+...++.+|.+|    .+.|+.++++......+|++++|.+.+ +.+        .++...+.+.+++.+++.+
T Consensus       423 ~~~~~~~~~~~~~~e~~p----~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--------~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       423 GITSAFQMVYLYTAELYP----TVVRNLGVGVCSTMARVGSIISPFLVY-LGE--------KWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             HHHHHHHHHHHHhccccc----HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--------HHHhhHHHHHHHHHHHHHH
Confidence            777777888899999888    889999999999999999999999888 433        2345556555555444443


Q ss_pred             H
Q psy195          211 V  211 (691)
Q Consensus       211 ~  211 (691)
                      +
T Consensus       490 ~  490 (505)
T TIGR00898       490 L  490 (505)
T ss_pred             H
Confidence            3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.62  E-value=2.7e-06  Score=93.95  Aligned_cols=135  Identities=7%  Similarity=-0.116  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy195           36 CYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNI  115 (691)
Q Consensus        36 ~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~  115 (691)
                      ........++.|+++.+|.++.++|.+.+...++..+++++.|++.||+ ++++.+..+..+ .++..++.....+    
T Consensus       220 ~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~~~----  293 (393)
T PRK11195        220 AGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQHSL----  293 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHhHH----
Confidence            3334445567788888999999999999999999999999999999997 999888777533 2332222222111    


Q ss_pred             chhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          116 PKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQ-LEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       116 ~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~-rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                         +...+..++.|++.|...++..+...+.-|    ++. +|+..+..++..++|..++..+.+.+..
T Consensus       294 ---~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~----~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~  355 (393)
T PRK11195        294 ---LPAYPLLILIGALGGFFVVPMNALLQHRGH----VLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK  355 (393)
T ss_pred             ---HHHHHHHHHHHHhhhhhhhhHHHHHHhhCc----ccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence               445566778889988888777777766432    433 7999999999999999999998886643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.61  E-value=3.9e-06  Score=92.08  Aligned_cols=69  Identities=4%  Similarity=0.148  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHh
Q psy195           39 GMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVT  108 (691)
Q Consensus        39 ~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s  108 (691)
                      ....+.+.|+.+++|++..+.+.+.....++..++.++.|++.||+ |||+.+.++.++..++.+++...
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567778888999999999999999999999999999999997 99999999988887777766654

>PRK11043 putative transporter; Provisional

Probab=98.60  E-value=5.8e-06  Score=91.02  Aligned_cols=140  Identities=11%  Similarity=0.048  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh--
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA--  109 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~--  109 (691)
                      +....++....++|.|++ +.|++..+.|.......++..++.++++++.||+ |+|+.+..+.++..++.+.+....  
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455555666777775 5799999999988888888899999999999997 999987666555544433322211  


Q ss_pred             -cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          110 -IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       110 -~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                       .+..     ....++..+.+++.+...+...+...+..|     ++++++.++.......++.+++.+.+.+.+
T Consensus       292 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        292 SHPSL-----VPLLIPFCVMAAANGAIYPIVVAQALRPFP-----QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             ccCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence             1111     344555667788888888888777777554     468999999888777777788888777654

>KOG2504|consensus

Probab=98.59  E-value=6.9e-07  Score=101.79  Aligned_cols=177  Identities=14%  Similarity=0.153  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH--HHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI--VILSIVY   98 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i--~ig~il~   98 (691)
                      +.++.+.+...+..++++.-..+++.|.. ..+++..+++.++++..+...++.++.|+++|+. ..++..  .++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            56667777777888888888888999987 7999999999999999999999999999999997 633333  3333333


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      .++.+..+...  ++     ..+...-++.|++.|.+....+..+.|..+    .++...++++..+...++.++||.++
T Consensus       376 gl~~~~~p~~~--~~-----~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g----~~~l~~a~Gl~l~~~gi~~l~gpPia  444 (509)
T KOG2504|consen  376 GLARLFLPFAT--TY-----VGLIVFSILFGFCVGSFSSLTPVILVDLVG----LEKLSNAYGLLLLFQGIGALVGPPIA  444 (509)
T ss_pred             HHHHHHHHHhc--cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----hhhcchHHHHHHHHhHHHHHcCcccc
Confidence            33333333322  12     667777788899999998888889999776    88889999999999999999999999


Q ss_pred             HHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          179 PIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       179 ~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +++.+.      ..+|...|+.+++.++++..++++..
T Consensus       445 g~~~d~------tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  445 GLLYDI------TGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeeec------cCCeeeehhhcChHHHHHHHHHHHhH
Confidence            988774      34588899998888888876665554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.57  E-value=6.3e-06  Score=89.64  Aligned_cols=147  Identities=10%  Similarity=0.009  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV  103 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i  103 (691)
                      +..++..++...+.+....+.+.++.+.+|+++.+++.+.....++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3333334444444555555667778888999999999999999999999999999999997 999999988776544333


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy195          104 LLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFS-INAGSLISTFITP  179 (691)
Q Consensus       104 ll~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~-~nlG~~igp~i~~  179 (691)
                      .+........   ..+.+.++..+.+.+.+...+.......|..     ++.+++..+..... ..+|..+++.+++
T Consensus       276 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        276 WLVVSALLDL---GFWALVVGVAAFVGCVSMISSNAMAVILDEF-----PHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhHHHHHHHhccc-----cccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222111000   0033334444444455555555555555644     35677777775543 3455665555543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.57  E-value=4.1e-06  Score=91.87  Aligned_cols=165  Identities=10%  Similarity=-0.034  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchh---HHHH-HHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKF---LTIV-ILSI   96 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRk---k~i~-ig~i   96 (691)
                      +.+|.+.+..++....+|++..++|.|+++ .|++.. ++....+..+...   +..++++||. .||   +... ...+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            556777778888889999999999999965 688865 5555545444444   4458888886 654   3222 2222


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        97 l~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +..++..++.....+       ....+...+.+++.+...+...++.+|.+|    ++.|+++.++.+...++|+.++|.
T Consensus       266 ~~a~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p----~~~rgt~~G~~~~~g~~~~~~~~~  334 (368)
T TIGR00903       266 LIAAFFLALAFELNR-------LALFAFIGIAGLLMLPAYAIIMDWIGKFCD----KELHGKAAGAIGFTSRAISVALAL  334 (368)
T ss_pred             HHHHHHHHHHHcccc-------HHHHHHHHHHHHhhhhhHHHHHHHHHHhcc----hhhcCcccchhhHHHHHHHHHHHH
Confidence            222222222222111       333444455666666666778889999888    899999999999999999999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +.+.+..         +....|.+.++..+++.+.
T Consensus       335 ~~~~~~~---------~~~~~f~~~~~~~~i~~~~  360 (368)
T TIGR00903       335 AAMLFIS---------SAEAYFTFLAILITIAFAI  360 (368)
T ss_pred             HHHHHhc---------CHHHHHHHHHHHHHHHHHH
Confidence            8886653         2344555555555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686|consensus

Probab=98.54  E-value=6.8e-07  Score=91.60  Aligned_cols=132  Identities=18%  Similarity=0.303  Sum_probs=109.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCCCchhHHHH
Q psy195           44 LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLNIPKRTFTL  122 (691)
Q Consensus        44 l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~~~~~~~l~  122 (691)
                      +-.+.+.+.+.+.++..++.+.+..-..+.++++|++.||..|-|..-++-+++..+|.+.++... ....     +++.
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aF-----w~M~  140 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAF-----WTML  140 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHH-----HHHH
Confidence            566677777788888889999999999999999999999987887766666666678887776542 1111     8899


Q ss_pred             HHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          123 VGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       123 i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      .+|++.|+|.-......+.+..-+|.    .++.+..++++.....+|+.+-.++.+++.+.
T Consensus       141 ~GRF~FGIGgESlAVaQN~yav~wFK----GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  141 AGRFLFGIGGESLAVAQNKYAVYWFK----GKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             hhheeeccCchhhhhhhcceeEEEec----CccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            99999999988888888999999997    78899999999999999999888888888764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.50  E-value=3.6e-06  Score=95.36  Aligned_cols=159  Identities=8%  Similarity=0.002  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.+++..++...+.+....+.+.|.+ ...-+....+.+.....++..++.++.++++||+ |||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            56666666666666666555454443433 3333566667777777788899999999999998 999999988877666


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+.+.......  ....+.+++..++.+++.+...+...++++|..+.   .+..++.|..++...+...+|..+|+.+
T Consensus       309 ~~~~~~~~~~~~--~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        309 SCGVLLLMGLAA--PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            665544321100  00014556666778899999999999999998651   2334556778999999999999999999


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      .+++.+
T Consensus       387 ~g~~l~  392 (473)
T PRK10429        387 IGVVLG  392 (473)
T ss_pred             HHHHHH
Confidence            888765

>PRK09669 putative symporter YagG; Provisional

Probab=98.45  E-value=6.8e-06  Score=92.18  Aligned_cols=156  Identities=12%  Similarity=0.002  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.+++..++...+.... ..+..|+.+..--++...+.+.....+...++.++.++++||+ |||+.+.++.++..+
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTR-GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHH-hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            34455544444443444322 2344444332222333444555566677888889999999997 999999988766554


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+.+......+.     +.+++..++.|++.+...+...++++|..+.   .+..++.|..++.+.++..+|..+|+.+
T Consensus       307 ~~~~~~~~~~~~~-----~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i  381 (444)
T PRK09669        307 LSALIFFIPPSNV-----WLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAV  381 (444)
T ss_pred             HHHHHHHhCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3332222111111     5567777889999999999999999997751   1123445778889999999999999999


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      ++.+.+
T Consensus       382 ~g~ll~  387 (444)
T PRK09669        382 VGWILA  387 (444)
T ss_pred             HHHHHH
Confidence            988765

>KOG2816|consensus

Probab=98.44  E-value=4.2e-05  Score=86.03  Aligned_cols=127  Identities=15%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             HHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH--Hhhchhhhhhhhhh
Q psy195           67 TGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAV--GTGGIKPCVSSFGG  144 (691)
Q Consensus        67 ~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gi--g~G~~~~~~~~~~a  144 (691)
                      .+...+.+++-|.++|+| |||..+.+..+...+..+.+.+..         +.+++   +.++  +.+.......++++
T Consensus        72 ~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~---~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQG---------YWFFL---LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             HHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh---hcccccchhhhhhhhhhhee
Confidence            677888999999999998 999999999887777666555532         11222   3332  23345567778888


Q ss_pred             ccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          145 DQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       145 d~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      |    .+..++|...+++.......+..++|.+++.+.+       ..+....|.++.+..+++.+......|
T Consensus       139 d----is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~-------~~~~a~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  139 D----ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK-------FLGIALVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             e----ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hcCchHHHHHHHHHHHHHHHHHhhccc
Confidence            8    5558899999999999899999999999999877       356778888888877777665554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.43  E-value=1.8e-06  Score=93.28  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      ++.+.+..++....++++..+++.|+++.+|+++.+++.+.+...++..++.+++|+++||+ |||+.+..+..+..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            44444444454555667778899999999999999999999999999999999999999997 99998887776666655


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHH
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAG  170 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG  170 (691)
                      .++.....+..   ....+.+..++.+++.|...+...++.++.+|     +++|...+......++|
T Consensus       306 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       306 FLVVLGLVSPL---SLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-----RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhcCCCcc---hHHHHHHHHHHHHHHhccccchhhhcchhhch-----hhcccHHHHHHHhccCC
Confidence            55443211100   01444455556666667666777777777663     58899999887776665

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.41  E-value=1.5e-05  Score=88.76  Aligned_cols=166  Identities=10%  Similarity=-0.070  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLV-LLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGG  101 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~-lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig  101 (691)
                      ++...+..++...+..+..++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++||++.+..++..+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            44444455554455557778899998653 255666666677777788899999999999997 9999988887777666


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          102 NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       102 ~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .++......        .......++.|+..+...|...+...+.++    ++.+ ...+...++ .+|+++.|.+.+++
T Consensus       313 ~ll~~~~~~--------~~~~~~l~~~glf~s~~fp~i~sl~~~~~g----~~~~-~~s~~l~~~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       313 CLGSIFAGG--------HVGLYCLTLCSAFMSLMFPTIYGIALKGLG----QDTK-YGAAGLVMA-IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHHHcCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhh-hhHHHHHHH-HhccchHHHHHHHH
Confidence            666555321        233566777888888888999999999775    3332 222323333 38999999999998


Q ss_pred             hccccccCCCCchhHHHHHHHHH
Q psy195          182 RHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       182 ~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      .+..+... ..+.+..|.++...
T Consensus       379 ~d~~~~~~-~~~~~~~~~~~~~~  400 (410)
T TIGR00885       379 IDMKEIAA-APAVNTSFILPLLC  400 (410)
T ss_pred             HHHhcccc-cCccchHHHHHHHH
Confidence            87210000 11466777765543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.40  E-value=3.7e-05  Score=84.44  Aligned_cols=133  Identities=17%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Q psy195           41 RTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTF  120 (691)
Q Consensus        41 ~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~  120 (691)
                      ....+.|+++.+|++..+.+.+.....++..++.++.+++.||+ ||+...  +.....++.+++........  ...+.
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~  301 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV--MNVWT  301 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc--ccHHH
Confidence            34566788877999999999988888888888999999999997 743333  32222333222221111000  00045


Q ss_pred             HHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          121 TLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       121 l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      +.++.++.++|.|...+...++..|.+|     ++++...+......++|+.+++.+++.+..
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFP-----YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            6677788899999988999998888664     467888999888889999999999887754

>KOG2532|consensus

Probab=98.39  E-value=7.2e-06  Score=92.44  Aligned_cols=182  Identities=15%  Similarity=0.153  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch------hHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK------FLTIVIL   94 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR------kk~i~ig   94 (691)
                      ..+|.+++..++...+++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.++|+...|      ++-+.-+
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            5688899999999999999999999999999999999999999999999999999999999997331      1112212


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy195           95 SIVYLGGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLI  173 (691)
Q Consensus        95 ~il~~ig~ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~i  173 (691)
                      ......+..+..++..+....... ..+.++..+.|+..+++.-      ..+.   ..++.-+.++++.+...++.+++
T Consensus       338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~------~~~~---~apq~a~~l~g~~~~~~~~~~~~  408 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYK------NHQD---IAPQHAGFVMGIINFVGALAGFI  408 (466)
T ss_pred             HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHh------hhhh---ccchHHHHHHHHHHHHHHHHHHH
Confidence            222222222222221211100000 1122222222222222211      1111   12567799999999999999999


Q ss_pred             HHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          174 STFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       174 gp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      +|.+.+.+... ++   ...|+..|.+.+++++++.+++.+.
T Consensus       409 ~P~~vg~~~~~-~t---~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  409 APLLVGIIVTD-NT---REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHheeeEeCC-CC---HHHHHHHHHHHHHHHHHhchheeEe
Confidence            99999987641 11   3479999999998888887665443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.35  E-value=4.8e-05  Score=84.42  Aligned_cols=182  Identities=15%  Similarity=0.152  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHH
Q psy195           26 IVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLL  105 (691)
Q Consensus        26 l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill  105 (691)
                      .++..++...+.-....+.+.|+++.-|.+....+.+.++..+.-.+.-.+.+++-.|+ |.++++.++++.+++=..++
T Consensus       212 Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~  290 (400)
T PF03825_consen  212 FLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLY  290 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445567788998764448888888888887888888889999999998 99999999988877766666


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q psy195          106 TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFS-INAGSLISTFITPIFRHD  184 (691)
Q Consensus       106 ~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~-~nlG~~igp~i~~~l~~~  184 (691)
                      +....|...  ......++-.+.|+..|....+...++.+..|    ++.|+++-+++... ..+|.++|..++|++.+.
T Consensus       291 a~~~~~~~~--~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p----~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~  364 (400)
T PF03825_consen  291 AYFSDPWPF--IVALQLLGQLLHGLTFGLFHAASVRYIDRIAP----PELRATAQGLYSALSFGLGGAIGSLIGGWLYDA  364 (400)
T ss_pred             HHhcCCcHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC----ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            654222110  00112233456899999999999999999777    88899999988765 578999999999999874


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHHHHHhh
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAIIVFIIG  215 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~  215 (691)
                      .+.-+ ...|...+.+++++.++..+++++.
T Consensus       365 ~g~~~-~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  365 FGARG-MFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             hcchh-hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            21100 2335566667666666655555544

>KOG0253|consensus

Probab=98.26  E-value=1.7e-05  Score=84.51  Aligned_cols=148  Identities=14%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------CCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVL--L-----------------YDEKTATVMFHIWTGLCYFFPLFGGI   79 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~l--g-----------------~s~~~ag~i~~~~~i~~~i~~l~~G~   79 (691)
                      .+|.-+++..+-+.++++||++.-......+...  |                 ++...--.=..+....-+-|.++.|+
T Consensus       324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~  403 (528)
T KOG0253|consen  324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV  403 (528)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH
Confidence            3455566677778889999988655433333211  1                 11111111233456677788999999


Q ss_pred             HhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHH
Q psy195           80 IADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKF  159 (691)
Q Consensus        80 LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~  159 (691)
                      +.||+ |||++|....+++.+..+++.....++...   ..++.+|+.+..+    ..+.+.|..|.||    ..-|+.+
T Consensus       404 iverl-GRKkTMal~l~~f~iflfll~~c~~rn~~t---vllf~arafisg~----fqvaYvYtPEVyP----TavRatg  471 (528)
T KOG0253|consen  404 IVERL-GRKKTMALSLILFGIFLFLLTTCKTRNAYT---VLLFTARAFISGA----FQVAYVYTPEVYP----TAVRATG  471 (528)
T ss_pred             HHHHh-cchhHHHHHHHHHHHHHHHHHHhcCcchhH---HHHHHHHHHHhch----heEEEEecCcccc----hhhhhcc
Confidence            99996 999999999888877766665542221110   5566777665433    4567888889998    8889999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy195          160 FSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       160 ~~~~~~~~nlG~~igp~i~  178 (691)
                      .|.-..+..+|+++.|.++
T Consensus       472 vGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH
Confidence            9998888999999999988

>KOG3098|consensus

Probab=98.26  E-value=0.00078  Score=75.27  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhh
Q psy195           63 FHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSF  142 (691)
Q Consensus        63 ~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~  142 (691)
                      .++......++.++++.+.|+. |.|+.+.+|+..+.+-.+.+...+.        +.++++-.+.|+|.+..+.....+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~N~--------y~~yfssallG~Gaallw~GqG~y  126 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFPNS--------YYLYFSSALLGFGAALLWTGQGGY  126 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhcch--------HHHHHHHHHhhhhHHheeccccee
Confidence            4555566677888889999996 9999999998777665554444322        788999999999999999999999


Q ss_pred             hhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          143 GGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       143 ~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      +++    ...++.+++..++.....+.+.++|..+..
T Consensus       127 lt~----~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  127 LTS----NSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             hhh----cCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            999    445888888888776666777766655433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.25  E-value=0.00014  Score=75.28  Aligned_cols=133  Identities=14%  Similarity=0.095  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT  121 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l  121 (691)
                      +.....+++.+|+|.++...+...-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..++.............+.+
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            34556678899999999999999999999875 8889999998 999999999999999998887763211111111566


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIF  181 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l  181 (691)
                      .+..++.+.|.+.+.+..-.-..+.||     ++||.+.++.-....+++++-..+...+
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-----~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-----RSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-----cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            666666666666655555555567886     4789999998777777776654444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.23  E-value=1.4e-07  Score=108.09  Aligned_cols=181  Identities=13%  Similarity=0.106  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhc--CC
Q psy195           35 FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAI--DP  112 (691)
Q Consensus        35 ~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~--~~  112 (691)
                      ....+.......-+.++++++.+++|++.+.+-++..+..++..+.++|. .|-|-+-+|.++..+|.++++++++  +.
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            44445555555567788999999999999999999999999999999996 8888889999999999999887642  10


Q ss_pred             C------------------C--------------C----c---h-h-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcc
Q psy195          113 L------------------N--------------I----P---K-R-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPE  151 (691)
Q Consensus       113 ~------------------~--------------~----~---~-~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~  151 (691)
                      +                  .              .    .   . . ..++++.++.|+|.....+.-.+|+=|    ..
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD----nv  170 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD----NV  170 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc----cc
Confidence            0                  0              0    0   1 1 567888899999999999999999888    44


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC---------------CCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          152 QSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG---------------QEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       152 ~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g---------------~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +++..+...++.+....+|.++|..+++.+.+..-+++               +-..|+.+|.+.+++.++..+.++...
T Consensus       171 ~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  171 SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            58888899999999999999999888876543211111               113599999988887776666555544


Q ss_pred             cccc
Q psy195          217 PMYK  220 (691)
Q Consensus       217 ~~~~  220 (691)
                      |+.+
T Consensus       251 k~lp  254 (539)
T PF03137_consen  251 KKLP  254 (539)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            4443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.23  E-value=0.00065  Score=76.25  Aligned_cols=154  Identities=12%  Similarity=0.100  Sum_probs=106.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc--Cc--hhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           43 VLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY--LG--KFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        43 ~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~--lG--Rkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      -...|+++++|+++++.....+...+.- ...++.|.++|.+  .|  ||+=++++.++..++.+.++..  +.... +.
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~--~~~~~-s~   86 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL--PASES-SA   86 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc--ccccc-hh
Confidence            3455778899999999887666555544 4556888999995  23  5566677776665555554442  21100 11


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      ....+..++..+|....-...-++.+|.-. ..+.+ ++...++.+....+|++++..++|.+.+       ..+++..|
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~-~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~~f  157 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELAR-REPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQGVF  157 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhh-cCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeEEe
Confidence            445566677888888888888889998775 33333 8999999999999999999999988876       35567677


Q ss_pred             HHHHHHHHHHH
Q psy195          199 GVPALLMFLAI  209 (691)
Q Consensus       199 ~i~~~l~~l~~  209 (691)
                      .+.+++..+..
T Consensus       158 ~i~~~~~~l~~  168 (433)
T PF03092_consen  158 LISAALPLLML  168 (433)
T ss_pred             hHHHHHHHHHH
Confidence            77665544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.21  E-value=7.8e-05  Score=83.18  Aligned_cols=157  Identities=16%  Similarity=0.163  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.+..+++..++...++....+.+.-|.+..+|.++..+.........+..++.++...+++|+ |+|++..++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4455555566666666655555566666667889999998888888888889899999999997 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+++.+....+.     .+.++..++.++|.+...+...++++|..+-   .+..++-|..++.+.+..=+|.+++..+
T Consensus       315 ~~~~~~f~~~~~~-----~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         315 GYLLLYFTPAGSV-----VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHhhcCcch-----HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            9988877642222     7778888999999999999999999997652   2334455778888888888888888877


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      .+++..
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            776654

>TIGR01272 gluP glucose/galactose transporter

Probab=98.20  E-value=0.0004  Score=74.37  Aligned_cols=88  Identities=10%  Similarity=-0.002  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc----C----
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQ-CF----G----  189 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~-~~----g----  189 (691)
                      ..++++.++.|.|.+...+..++++++.-+    ++++.+..++.+.+..+|..+||.+++.+..... +.    +    
T Consensus        11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~----~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~   86 (310)
T TIGR01272        11 VLFLGALFVLASGLTILQVAANPYVSILGP----IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA   86 (310)
T ss_pred             HHHHHHHHHHHhhHHHHHhhHHHHHHHHCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence            778899999999999999999999999665    7778999999999999999999999997663100 00    0    


Q ss_pred             CCCchhHHHHHHHHHHHHHHH
Q psy195          190 QEACFPLAFGVPALLMFLAII  210 (691)
Q Consensus       190 ~~~~w~~~F~i~~~l~~l~~l  210 (691)
                      ....|+.+|++.+++..+..+
T Consensus        87 ~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        87 EAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            013588888865555444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=98.18  E-value=9.4e-05  Score=83.62  Aligned_cols=156  Identities=8%  Similarity=-0.035  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      |.++.++...++...+..........|.+..+|. +...+.+...+.++..++.+++++++||+ |+|+++..+.++..+
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~  305 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV  305 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            4444444444444444433333333333333444 33445667778888899999999999997 999887765554433


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIV---PEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~---~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      +.+++.+....     ....+++..++.|++.+...+...++++|..+.   .+..++-|..++...+...+|..+|+.+
T Consensus       306 ~~~~~~~~~~~-----~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i  380 (460)
T PRK11462        306 ISLAMFFVPMQ-----ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL  380 (460)
T ss_pred             HHHHHHHhchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            33332221110     003344555667888777777777888886541   1113333555677778889999999998


Q ss_pred             HHHhhc
Q psy195          178 TPIFRH  183 (691)
Q Consensus       178 ~~~l~~  183 (691)
                      ++.+.+
T Consensus       381 ~g~iL~  386 (460)
T PRK11462        381 IGWMLA  386 (460)
T ss_pred             HHHHHH
Confidence            887654

>KOG0569|consensus

Probab=98.17  E-value=9e-05  Score=83.34  Aligned_cols=160  Identities=11%  Similarity=0.058  Sum_probs=102.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      .++..+..+...++..+.--.........+-...|++..++.+++....+...+.++++.++.||+ |||+.++++..++
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~  345 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM  345 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            445555555555554333222223334444456799999999999999999999999999999997 9999999999888


Q ss_pred             HHHHHHHHHhh-cCCCCCchh-HHHHHHHHHHHHHhhc-hhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTA-IDPLNIPKR-TFTLVGLLLIAVGTGG-IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus        99 ~ig~ill~~s~-~~~~~~~~~-~~l~i~~~l~gig~G~-~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      .+..+++.... .......+. ...+++.++..++.+. .-|...-+.+|.||    ++.|..+.++......+..++-.
T Consensus       346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~----~~~R~aa~s~~~~~~w~~~fiv~  421 (485)
T KOG0569|consen  346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFP----QSARSAAQSVATAVNWLSNFIVG  421 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCC----ccchHHHHHHHHHHHHHHHHHHH
Confidence            87777666542 110000011 1223444444444433 24666778899998    77788888877666665555544


Q ss_pred             HHHHHhhc
Q psy195          176 FITPIFRH  183 (691)
Q Consensus       176 ~i~~~l~~  183 (691)
                      ..-+.+.+
T Consensus       422 ~~fp~l~~  429 (485)
T KOG0569|consen  422 FAFPPLQN  429 (485)
T ss_pred             HHHHHHHH
Confidence            44444544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.17  E-value=0.00015  Score=79.06  Aligned_cols=172  Identities=16%  Similarity=0.225  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhc-
Q psy195           32 CERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAI-  110 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~-  110 (691)
                      ...+++++-=..+=+|--+.+|++..++..++..+..+..++..+.|++..|-+|++++..+|+.+..++..++..+.. 
T Consensus       219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~  298 (403)
T PF03209_consen  219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL  298 (403)
T ss_pred             HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344554444556677777899999999999999999999999999999886569999999999998888887776642 


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-C
Q psy195          111 DPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCF-G  189 (691)
Q Consensus       111 ~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~-g  189 (691)
                      .+.     +.+..+.+++|+|.|.+....-+...|...    +++.|..++.+.....++..+|..+++.+.+....+ +
T Consensus       299 ~~~-----~~~~~~~~l~G~g~G~f~vgals~mM~lt~----~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~  369 (403)
T PF03209_consen  299 GSP-----WLFRPGVFLLGLGNGLFTVGALSLMMDLTS----AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFG  369 (403)
T ss_pred             ccc-----hHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            111     889999999999999999888888888554    778899999999998888888888888776532211 1


Q ss_pred             --CCCchhHHHHHHHHHHHHHHHHH
Q psy195          190 --QEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       190 --~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                        +..+|...|.+-++++++++.+.
T Consensus       370 ~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  370 NSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHH
Confidence              13457777777777666665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.14  E-value=9.5e-05  Score=83.96  Aligned_cols=179  Identities=10%  Similarity=0.060  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHhHHHHH----HHhHhcCchhHH--HHHHHH
Q psy195           27 VINEFCERFCYYGMRTVLSLYMHLVLLYDEKT----ATVMFHIWTGLCYFFPLFGG----IIADTYLGKFLT--IVILSI   96 (691)
Q Consensus        27 ~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~----ag~i~~~~~i~~~i~~l~~G----~LaDr~lGRkk~--i~ig~i   96 (691)
                      ++...+....|.-..+.++.|..+..+.+...    .+++.+.-.+...+..++..    ++.||-.+.+..  +.+|.+
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~  357 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML  357 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            33333444555555666888877654443222    55666666666666665544    445541133333  367888


Q ss_pred             HHHHHHHHHHHhh-cCCC-CCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy195           97 VYLGGNVLLTVTA-IDPL-NIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIS  174 (691)
Q Consensus        97 l~~ig~ill~~s~-~~~~-~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~ig  174 (691)
                      +..++.+.+++.. .... ...+.+.+.+..++.++|.....|...++.++..|    ++.||+.++.+..+..+|..++
T Consensus       358 l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP----~~~~g~~~g~~~l~~~~g~~l~  433 (475)
T TIGR00924       358 FCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP----QRLMGQMLGMWFLAQAMGSLLG  433 (475)
T ss_pred             HHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777766431 0000 00111778889999999999999999999999665    9999999999999999999998


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          175 TFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       175 p~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +.+......       ..+|...|...++.+++..++++...
T Consensus       434 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       434 GYLATFGAV-------PQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            888776544       34566667666665555555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.09  E-value=0.00026  Score=72.08  Aligned_cols=148  Identities=20%  Similarity=0.253  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH
Q psy195           42 TVLSLYMHLVLLYDE--KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRT  119 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~--~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~  119 (691)
                      ...+.+.. ..+.+.  ...+.+.+.+.+...++.++.|.++||+ |||+.+..+.....++.++..+....     ...
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   95 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPNV-----GLA   95 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCccc-----hHH
Confidence            33444443 445454  5788999999999999999999999998 99988888876645554444433210     117


Q ss_pred             HHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          120 FTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYF-SINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       120 ~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~-~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      .+.+.|++.|++.|...+...++++|.+| .  ..+|+...+.... ...+|..+++.+++.+... .    ..+|+..|
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~  167 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSEWFP-E--ATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-L----LWGWRAAF  167 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hcchHHHH
Confidence            78888988999999999999999999987 2  1578888888888 5778888888777666541 1    35688866


Q ss_pred             HHHHHH
Q psy195          199 GVPALL  204 (691)
Q Consensus       199 ~i~~~l  204 (691)
                      .+....
T Consensus       168 ~~~~~~  173 (338)
T COG0477         168 LLAALL  173 (338)
T ss_pred             HHHHHH
Confidence            554443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.08  E-value=0.00017  Score=79.67  Aligned_cols=174  Identities=9%  Similarity=0.068  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVL---LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~l---g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      |.+|.+.+........|+..-.-++.|.+..+   +.+....|.+.++..+.-.+.-.+..++-+|+ |.|+.++++.++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence            55665555444444455555455788887533   34456678888888888889999999999997 999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHH-HHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLF-YFSINAGSLISTF  176 (691)
Q Consensus        98 ~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~-~~~~nlG~~igp~  176 (691)
                      ..+=.++.+++..+       +.+.+...+.++-.+..-....-|+++.+|    ++...+.+.+. +.+..+|..+.+.
T Consensus       299 ~~iRi~~~~~~~~~-------~~i~~~klLH~~e~~l~lva~fkYI~~~fd----~rlsAt~y~v~~~~~~~~~~~i~s~  367 (412)
T PF01306_consen  299 MAIRIIGSGFATNP-------WVISLIKLLHALEFPLLLVAAFKYITAHFD----KRLSATLYLVGFQFAKQIGIIILSP  367 (412)
T ss_dssp             HHHHHHHHHT--SH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----GGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77766666665443       788899999999999999999999999997    77667777764 5677889998999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      ++|.+.+       +.|++..|++.+.+.+...++-.
T Consensus       368 ~~G~lyd-------~~G~~~tylimg~iv~~~~li~~  397 (412)
T PF01306_consen  368 LAGYLYD-------RIGFQHTYLIMGLIVLPFTLISA  397 (412)
T ss_dssp             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhHh-------hcCcHHHHHHHHHHHHHHHHHhe
Confidence            9999988       57788888777766554444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.07  E-value=0.00029  Score=78.41  Aligned_cols=153  Identities=12%  Similarity=-0.072  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLG  100 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~i  100 (691)
                      +.++...+..++....+++....+|.++++.+|++..+.++.......+..++..+.+.+.++. ++++.+..+..+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            3455555555555666666667788999988999999999988778888888777777766554 454554444444445


Q ss_pred             HHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTA--IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       101 g~ill~~s~--~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                      |.+++....  .+..    ....+++.++.++|.+...|+.....-.+.     ...+|+..+........+..+++.+.
T Consensus       297 g~~l~~~~~~~~~~~----~~~~~~~~~l~~~G~~~~~p~~~~~al~~~-----~~~~G~a~a~~~~~~~~~~~~~~~~~  367 (413)
T PRK15403        297 GLALLIVGNLLWPHV----WLWSVLGTSLYAFGIGLIFPTLFRFTLFSN-----NLPKGTVSASLNMVILMVMAVSVEIG  367 (413)
T ss_pred             HHHHHHHHHHHcccc----HHHHHHHHHHHHHHHHHHhHHHHHHHhccC-----CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            544443321  1110    023567888889999988888775333322     22357777777777777778888888


Q ss_pred             HHhhc
Q psy195          179 PIFRH  183 (691)
Q Consensus       179 ~~l~~  183 (691)
                      +++..
T Consensus       368 g~~~~  372 (413)
T PRK15403        368 RWLWF  372 (413)
T ss_pred             HHHHH
Confidence            88765

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.96  E-value=0.00017  Score=82.13  Aligned_cols=143  Identities=9%  Similarity=0.007  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH-------HHHHHHHHHHHHH
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDEK----TATVMFHIWTGLCYFFPLFGGIIADTYLGKFL-------TIVILSIVYLGGN  102 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~~----~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk-------~i~ig~il~~ig~  102 (691)
                      ...+......++.|+++..+.+..    ..+.+.+...+...+..++.|++.||+ |||+       -+.+|.++..++.
T Consensus       282 ~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~  360 (489)
T PRK10207        282 YILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGF  360 (489)
T ss_pred             HHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHH
Confidence            344445556678887753333211    123444455566767888889999997 9987       3777877777776


Q ss_pred             HHHHHhh--cCCCCCch-hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          103 VLLTVTA--IDPLNIPK-RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       103 ill~~s~--~~~~~~~~-~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      +.++...  ........ .+.+....++.|+|.++..|...++..+..|    ++.++.+++.+++..++|..+|..++.
T Consensus       361 ~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP----~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        361 LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVP----QHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443211  11011111 1556678888999999999999999999665    999999999999999999999888776


Q ss_pred             Hh
Q psy195          180 IF  181 (691)
Q Consensus       180 ~l  181 (691)
                      ..
T Consensus       437 ~~  438 (489)
T PRK10207        437 FT  438 (489)
T ss_pred             Hh
Confidence            44

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.95  E-value=0.0023  Score=69.97  Aligned_cols=129  Identities=17%  Similarity=0.037  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhcCC---CH----HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHH-HHHHHHHHHHHHHHHHhhcC
Q psy195           40 MRTVLSLYMHLVLLY---DE----KTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTI-VILSIVYLGGNVLLTVTAID  111 (691)
Q Consensus        40 i~~~l~~yl~~~lg~---s~----~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i-~ig~il~~ig~ill~~s~~~  111 (691)
                      ....+|+|+++..+-   ++    +..+...++..+...+..|+-|.++|+. |+||-. .+..++-++.++++..... 
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~-  111 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP-  111 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence            345688898876554   22    4456677788888888899999999998 866654 4444444555555554321 


Q ss_pred             CCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          112 PLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFIT  178 (691)
Q Consensus       112 ~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~  178 (691)
                       -   +. ....+..++..++..+......+++.|..+    +++.++..+.-+-...+|+.+..+++
T Consensus       112 -~---s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~----k~~~~riS~lg~~~gylgs~i~li~~  171 (438)
T COG2270         112 -G---SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTT----KDNMGRISGLGWALGYLGSVILLIFV  171 (438)
T ss_pred             -C---chHHHHHHHHHHHHHhcchhheehhhHhhhhcC----ccccCcccccccccccccchHHHHHH
Confidence             0   11 445555666778888888899999999775    55556666666666777777666554

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.92  E-value=8.6e-05  Score=62.49  Aligned_cols=65  Identities=22%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           31 FCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        31 ~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      ++...+...+.++++.|+++ .|+|..+.|.+.++..+...+++++.|+++||+ ||+|.+..+..+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            34445555778999999974 899999999999999999999999999999998 999988776544

>KOG3762|consensus

Probab=97.91  E-value=0.00028  Score=78.77  Aligned_cols=68  Identities=13%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           35 FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        35 ~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      .++-.+.+.++.|.. ++|+++.+.|.++..-.+..+++.|+.|.+|||+ -++|.+++|..+..+...+
T Consensus        25 ~~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   25 ARFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             ecccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Confidence            344467788999986 5999999999999999999999999999999998 8777777777766554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00068  Score=73.62  Aligned_cols=167  Identities=13%  Similarity=0.093  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      +++-.+..++-.-+--.+..+++.|+.+..|+++.+++..++.+..+.++|..++-++-.|+ -..|.+.+.+++..+.+
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            44444445554334446778899999988999999999999999999999999999999997 88888877765444444


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          103 VLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       103 ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      +...+...        ..-..+.++.|+..+...|++.+...+-.|   +.   .+..+..-.+..+|+++-|.+.|++.
T Consensus       317 ~~~~l~~g--------~v~~~~l~~ig~F~simfPTIfslal~~l~---~~---ts~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         317 LAVALIGG--------VVALYALFLIGLFNSIMFPTIFSLALKNLG---EH---TSVGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HHHHHhcC--------hHHHHHHHHHHHHhHHHHHHHHHHHHhccC---cc---ccccceeeeeheecchHHHHHHHHHH
Confidence            43333322        344567778899999999999999998775   11   22233333456788999999999998


Q ss_pred             ccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          183 HDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       183 ~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +       ..+-...+.+...++.+..++
T Consensus       383 d-------~~g~~~~~~~~pllc~lyV~~  404 (422)
T COG0738         383 D-------MFGIQLTFLIVPLLCYLYVLF  404 (422)
T ss_pred             H-------hhhhHHHHHHHHHHHHHHHHH
Confidence            7       344555544334444444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.85  E-value=0.00067  Score=77.60  Aligned_cols=143  Identities=8%  Similarity=0.035  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH--hcCCCHH------HHHHHHHHHHHHHHHhHHHH----HHHhHhcCchhHHHHHHHHHHH
Q psy195           32 CERFCYYGMRTVLSLYMHL--VLLYDEK------TATVMFHIWTGLCYFFPLFG----GIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        32 ~~~~~~y~i~~~l~~yl~~--~lg~s~~------~ag~i~~~~~i~~~i~~l~~----G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +....||.+...++.++..  ..+.+..      ..+++.++-.+...++.++.    +++.||+ +..+.+.+|.++..
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~  361 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS  361 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence            4455666666666666442  1111111      14445555555555665555    6666665 67788889999989


Q ss_pred             HHHHHHHHhhc-CCCCCch-hHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAI-DPLNIPK-RTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       100 ig~ill~~s~~-~~~~~~~-~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ++.+.+..... .+-.... .+.+.+..++.++|.++..|...+++.+..|    ++.||+.++.++++..+|..++..+
T Consensus       362 l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP----~~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        362 GAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVP----QRLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             HHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888766532 1100001 1578889999999999999999999999666    9999999999888887777776665


Q ss_pred             HH
Q psy195          178 TP  179 (691)
Q Consensus       178 ~~  179 (691)
                      ..
T Consensus       438 ~~  439 (500)
T PRK09584        438 AN  439 (500)
T ss_pred             HH
Confidence            54

>TIGR00788 fbt folate/biopterin transporter

Probab=97.70  E-value=0.0002  Score=81.16  Aligned_cols=131  Identities=11%  Similarity=-0.051  Sum_probs=103.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCCC--chhHHHHHHH
Q psy195           49 HLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLNI--PKRTFTLVGL  125 (691)
Q Consensus        49 ~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~~--~~~~~l~i~~  125 (691)
                      .+.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...... ..+...  +....+...-
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            356899999999999999999999999999999997 999999999888877765532110 000000  0013444556


Q ss_pred             HHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          126 LLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       126 ~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      ++.+++.|....+...++++..|    ++.+++.++++....++|..+++.+++.+.+.
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p----~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCP----SGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCC----CCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888999999666    88899999999999999999999999988763

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3764|consensus

Probab=97.64  E-value=0.00011  Score=79.24  Aligned_cols=164  Identities=12%  Similarity=0.045  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCc--hhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy195           35 FCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLG--KFLTIVILSIVYLGGNVLLTVTAIDP  112 (691)
Q Consensus        35 ~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lG--Rkk~i~ig~il~~ig~ill~~s~~~~  112 (691)
                      .+.-..-+.++++..+....+.-+.|....-..+...++..+.|.++||+ |  |-.....+++  ++|..........+
T Consensus       284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~--~~G~~~~~iP~~~~  360 (464)
T KOG3764|consen  284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLA--TVGVSSGPIPFATS  360 (464)
T ss_pred             chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHH--HHHHHhchhHhhhh
Confidence            33334557788888888886666888888888899999999999999998 9  4333333322  33433222221111


Q ss_pred             CCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q psy195          113 LNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSA---QLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFG  189 (691)
Q Consensus       113 ~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~---~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g  189 (691)
                      +     ..+++-++..+++.+...+...+......+ ....+   ..|..+++...+..+|.++||.+++.+.+      
T Consensus       361 ~-----~~L~vp~~~l~~~i~~~dasl~P~l~~lvd-~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~------  428 (464)
T KOG3764|consen  361 I-----AQLWVPNFGLGFGIGLADASLIPTLGYLVD-PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE------  428 (464)
T ss_pred             H-----HHHhhhhHHHHHHHHHHHHHHhhhhHHhcc-hhhccccceeeeHHHHHHHHHHHhhhccccccchhee------
Confidence            1     567777777788888777777776777665 44444   67899999999999999999999999887      


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          190 QEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       190 ~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                       ..|+.|.-.+.++..++..-++..
T Consensus       429 -~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  429 -AIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             -ehhHHHHHHHHHHHHHHHHHHHHH
Confidence             577776666655554444443333

>KOG2533|consensus

Probab=97.59  E-value=0.0007  Score=76.92  Aligned_cols=165  Identities=15%  Similarity=0.130  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh----cCchhHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADT----YLGKFLTIVILSIV   97 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr----~lGRkk~i~ig~il   97 (691)
                      .+|...+..++.-...|++..++|.|+++..|++..+++.+...+.++..++.+++|+++||    . .+|..+.....+
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~  352 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL  352 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            46667777777778888889999999998677999999999999999999999999999999    5 666666555544


Q ss_pred             HH-HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YL-GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus        98 ~~-ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      +. +|.+.+.....+       .....+.+....+.+...++......+...   +..++-...+.+..+.+.+++++|.
T Consensus       353 ~~~~g~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~---g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  353 YAIIGAISLLAAAVL-------PGAYGAFLIGPYGLIATAIIALSWTSANLA---GNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHHHHhhccc-------hHHhHHHHhcchhhHHHHHHHHhhcccccc---chHHhHHHHhhhhcchhHHHHhhhh
Confidence            43 343444433221       222222233333333444444444455332   3344444555544444444443333


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPAL  203 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~  203 (691)
                      +-.....     + ...|...|++..+
T Consensus       423 ~~~~~~a-----p-~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  423 LFRSLDA-----P-RYGWGAVFYMLVA  443 (495)
T ss_pred             hcccccC-----c-chhhhhHHHHHHH
Confidence            2211111     1 3457777744443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.58  E-value=0.0021  Score=72.79  Aligned_cols=196  Identities=11%  Similarity=0.057  Sum_probs=132.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH------H----HHHHHHHHHHHHHHhHHHHHHHhH
Q psy195           14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLV-LLYDEK------T----ATVMFHIWTGLCYFFPLFGGIIAD   82 (691)
Q Consensus        14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~-lg~s~~------~----ag~i~~~~~i~~~i~~l~~G~LaD   82 (691)
                      +.+++.||.++.++.+.++.-++++.+..+.+.|..++ ++-++.      +    ..+....+.+.+.+.+++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33556789999999999999999998888888888753 443211      1    123334455555677778888999


Q ss_pred             hcCch-hHHHHHHHHHHHHHHHHHHHhhc-CC-----------CCCc-h-hHHHHHHHHHHHHHhhchhhhhhhhhhccC
Q psy195           83 TYLGK-FLTIVILSIVYLGGNVLLTVTAI-DP-----------LNIP-K-RTFTLVGLLLIAVGTGGIKPCVSSFGGDQF  147 (691)
Q Consensus        83 r~lGR-kk~i~ig~il~~ig~ill~~s~~-~~-----------~~~~-~-~~~l~i~~~l~gig~G~~~~~~~~~~ad~f  147 (691)
                      ++ |+ |++-.++.++..++++...+... ++           ..+. + .+..++...+.|+..+.....-.+++++..
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~  409 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS  409 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence            97 95 56657776776776666553321 00           0000 1 145566677889999998888899999976


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          148 IVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       148 p~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      +  ...++.|..+++++.++.+...+..+..+.+...   +|  .+-..++.+.++.++++.+..+...|
T Consensus       410 ~--~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~---~g--~~~~~~~~~~gv~~~~aa~~~~~~~~  472 (477)
T TIGR01301       410 S--NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL---FG--GGNLPAFVVGAVAAFVSGLLALILLP  472 (477)
T ss_pred             c--ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH---cC--CCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence            4  1235569999999999999999888777764432   22  12345777778777777766555444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.50  E-value=0.17  Score=57.34  Aligned_cols=153  Identities=14%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHh-HHHHHHHhHhcCchhHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYD-----EKTATVMFHIWTGLCYFF-PLFGGIIADTYLGKFLTIVI   93 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s-----~~~ag~i~~~~~i~~~i~-~l~~G~LaDr~lGRkk~i~i   93 (691)
                      .+.++...+..++..+.|+.+.+     +.+.+..+     .....++-....+.+.+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            34555566666677777766555     45555553     334455555444444444 78899999997 99998887


Q ss_pred             HHHHHHHHHHHHHHhhcCC---CCCc-----------h----------hHHHHHHHHHHHH-HhhchhhhhhhhhhccCC
Q psy195           94 LSIVYLGGNVLLTVTAIDP---LNIP-----------K----------RTFTLVGLLLIAV-GTGGIKPCVSSFGGDQFI  148 (691)
Q Consensus        94 g~il~~ig~ill~~s~~~~---~~~~-----------~----------~~~l~i~~~l~gi-g~G~~~~~~~~~~ad~fp  148 (691)
                      ....+..-.+++++.-.|.   .++.           .          .+...+.-+...+ |.-..+-.-.++..|.+.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t  159 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT  159 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6666555555544431111   1110           0          0111111111111 111122245678889776


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          149 VPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       149 ~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                          .++-.|.++....+.|+|..+|+.+..++.
T Consensus       160 ----~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       160 ----IDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                888899999999999999999998888765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.46  E-value=0.12  Score=57.15  Aligned_cols=153  Identities=13%  Similarity=0.128  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHh-cCCCHHHHH-HHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh
Q psy195           41 RTVLSLYMHLV-LLYDEKTAT-VMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR  118 (691)
Q Consensus        41 ~~~l~~yl~~~-lg~s~~~ag-~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~  118 (691)
                      -+++..|+.+. .|++..+.. -+.-+..-......++...++|.. |.|++++++.+..++..+++.....  +     
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s--v-----   94 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS--V-----   94 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc--H-----
Confidence            36689999887 899988775 455556666777888899999996 9999999998877777666655421  1     


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAF  198 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F  198 (691)
                      ..+-+.-+.-|    ...++-.++-+-.+. ..++++-.++.++...+.-+|.++|..++-.+...    + ..++....
T Consensus        95 ~~mq~~q~~yg----~~~a~evay~sYiys-~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~----~-~~sy~~L~  164 (412)
T PF01770_consen   95 LAMQLMQFFYG----LATAAEVAYYSYIYS-VVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF----G-GVSYFQLN  164 (412)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHhee-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CCCHHHHH
Confidence            33444444444    444445555555555 55688888999998888888888888877766541    1 35677777


Q ss_pred             HHHHHHHHHHHHH
Q psy195          199 GVPALLMFLAIIV  211 (691)
Q Consensus       199 ~i~~~l~~l~~l~  211 (691)
                      ++..+...+++++
T Consensus       165 ~isl~~~~~a~~~  177 (412)
T PF01770_consen  165 YISLASVSLALLI  177 (412)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766655555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3762|consensus

Probab=97.42  E-value=0.0011  Score=74.05  Aligned_cols=171  Identities=11%  Similarity=-0.023  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHH
Q psy195           28 INEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTV  107 (691)
Q Consensus        28 ~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~  107 (691)
                      +...+..++.-.+.+++--++ ++++-.+..-|.+...-..+-++.-++.+++-.++ |+-+++.+++....+=.+.+..
T Consensus       378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~  455 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY  455 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence            333444455545555564454 45676666666555566667778888999999997 9999999998777666666655


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc
Q psy195          108 TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFS-INAGSLISTFITPIFRHDMQ  186 (691)
Q Consensus       108 s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~-~nlG~~igp~i~~~l~~~~~  186 (691)
                      ...|       |+.+..-++.|+..+.++.++.+|+++..|    ++.|..+-++.+.. -.+|-.+|.++++.+..   
T Consensus       456 L~n~-------W~vLPieilqgit~aliWaa~~sY~s~vaP----p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---  521 (618)
T KOG3762|consen  456 LQNP-------WMVLPIEILQGITHALIWAAIISYASHVAP----PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---  521 (618)
T ss_pred             hcCc-------hheeeHHHHHHHHHHHHHHHHHHHHHhhCC----CcchHHHHHHHHHHhcccCcchhhhhhhhhhe---
Confidence            4444       778888899999999999999999999666    77777777766554 36777788888887766   


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHHhhccc
Q psy195          187 CFGQEACFPLAFGVPALLMFLAIIVFIIGKPM  218 (691)
Q Consensus       187 ~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~  218 (691)
                          ..+-+..|.+.++.+++.++.+....+.
T Consensus       522 ----~fg~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  522 ----RFGARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             ----eehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                3556778888887777777766655543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.39  E-value=0.006  Score=58.55  Aligned_cols=107  Identities=10%  Similarity=0.070  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhh
Q psy195           63 FHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSF  142 (691)
Q Consensus        63 ~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~  142 (691)
                      .++......++.++++.+.+++ |.|+++++|.+.+.+-......   |+.     +.++.+-++.|+|.+..+++...+
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~---~~~-----~~l~~~s~l~G~~~a~lW~aqg~y  113 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY---PNS-----YTLYPASALLGFGAALLWTAQGTY  113 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh---hhH-----HHHHHHHHHHhhhhHHhhHhhhHH
Confidence            3444555566667777888996 9999999998777654433332   211     778899999999999999999999


Q ss_pred             hhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          143 GGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       143 ~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      +.+    .++++.+++..+++....+.+.++|..+...+.
T Consensus       114 lt~----~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  114 LTS----YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHH----cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998    445888899898887778888888877666543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4332|consensus

Probab=97.25  E-value=0.0026  Score=65.32  Aligned_cols=90  Identities=20%  Similarity=0.256  Sum_probs=66.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHh-hcCCCCCchhHHHHHH
Q psy195           46 LYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVT-AIDPLNIPKRTFTLVG  124 (691)
Q Consensus        46 ~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s-~~~~~~~~~~~~l~i~  124 (691)
                      .|+.+.+|+...+.|.+...-...+++...+.|-|+|+- |||+.-..-++.++    +..+. ..|.+     -.+.++
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTKhSpqY-----kVLmVG  130 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITKHSPQY-----KVLMVG  130 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhhcCCce-----EEEeeh
Confidence            455567899999999888887888888899999999996 99997655544444    33333 12322     567899


Q ss_pred             HHHHHHHhhchhhhhhhh-hhc
Q psy195          125 LLLIAVGTGGIKPCVSSF-GGD  145 (691)
Q Consensus       125 ~~l~gig~G~~~~~~~~~-~ad  145 (691)
                      |++-|+.++.....--++ ++|
T Consensus       131 R~LGGiaTsLLFSaFEsWliaE  152 (454)
T KOG4332|consen  131 RVLGGIATSLLFSAFESWLIAE  152 (454)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999877665554 344

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.18  E-value=0.0081  Score=69.54  Aligned_cols=163  Identities=10%  Similarity=-0.013  Sum_probs=111.8

Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHhHHHHHHHhHhcC
Q psy195            9 YMLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDE---KTATVMFHIWTGLCYFFPLFGGIIADTYL   85 (691)
Q Consensus         9 ~~~~~~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~---~~ag~i~~~~~i~~~i~~l~~G~LaDr~l   85 (691)
                      ++...+-++ .+|.+...+++.++..+.||++..+.|......++-+.   ..++++......+..++.++.|.+.-++ 
T Consensus       299 Pl~P~~Lf~-~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-  376 (599)
T PF06609_consen  299 PLFPHRLFK-DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-  376 (599)
T ss_pred             CcCCHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-
Confidence            334444444 45778887788888888888887888877776665554   3567777788888889999999999886 


Q ss_pred             chhHHH-HHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHH
Q psy195           86 GKFLTI-VILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY  164 (691)
Q Consensus        86 GRkk~i-~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~  164 (691)
                      ||-|-. +++.+++.++..+++.....+.     ...+...++.|+|.|....  ++...-|+  ..+++..+.+.++..
T Consensus       377 r~~Kw~li~~~~~~ta~~Gama~~~~~n~-----~~~i~~~~l~g~giG~~~~--~~~~~~ql--~~p~~~ig~a~gL~~  447 (599)
T PF06609_consen  377 RHIKWQLIFGSVLMTAFCGAMAAVRPDNK-----NAAIAFLVLAGFGIGGILV--PAIVIAQL--IVPDEDIGTATGLTG  447 (599)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHccCCCc-----chHHHHHHHHHHhHHHHHH--HHHHeeEe--eeCchHHHHHHHHHH
Confidence            876654 4666565555555444322221     3345666778888887544  33444455  455788999999998


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy195          165 FSINAGSLISTFITPIFR  182 (691)
Q Consensus       165 ~~~nlG~~igp~i~~~l~  182 (691)
                      ..-.+|+.+|..+..-+.
T Consensus       448 s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  448 SIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHhhHHHHHHHHHHH
Confidence            889999998888765543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=97.16  E-value=0.0043  Score=71.94  Aligned_cols=180  Identities=12%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCH-HH-HHHHHHHHHHHHHHhHHHHHHHhHhcCchhH--------
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVL-LYDE-KT-ATVMFHIWTGLCYFFPLFGGIIADTYLGKFL--------   89 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~l-g~s~-~~-ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk--------   89 (691)
                      .++|+++...+|..-+-..+..++.. +.+.+ |.+. .+ ....++++.+++++|.+.+|.++... -||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~q-I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNARF-IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHHH-HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence            46888888777754443344444443 33456 7733 32 22378999999999999999998332 3333        


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHH
Q psy195           90 -TIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSIN  168 (691)
Q Consensus        90 -~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~n  168 (691)
                       .+.+..+ +.++.+++++. .|.      ..++++-++.|++.|...+...+..+|.|.     +.-|..++....+.-
T Consensus       431 ~~l~~~~~-~~~~~lll~~~-~p~------~~L~~~~~lvg~~~G~~~~~~~~i~selFg-----k~~g~~yN~~~~a~p  497 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLT-LPK------AALPLPYFIAAFANGFMAATIALVTRTIFA-----KDPAKHYNFCFLGSV  497 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHH-CCc------cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-----cchHHHhhHHhHHHH
Confidence             2233333 55566665554 331      468899999999999999999999999993     667888888777777


Q ss_pred             HHHHHH-HHHHHHhhc-------cccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          169 AGSLIS-TFITPIFRH-------DMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       169 lG~~ig-p~i~~~l~~-------~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +|+.+- -.+.|.+.+       ...|.| ..+++..|.+.+++.+++.+.-....
T Consensus       498 igs~~~n~~l~G~~Yd~ea~k~~~~~C~G-~~C~~~~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        498 LSAIFLNRLLYGEWYTQQADKLGQDVCTE-RVCVVMPLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCeeCC-ceeeHhHHHHHHHHHHHHHHHHhhee
Confidence            777754 234444432       123556 67899999998888887776654444

>KOG0637|consensus

Probab=97.15  E-value=0.0098  Score=65.65  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhc---CchhHHHHH-HHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTY---LGKFLTIVI-LSIV   97 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~---lGRkk~i~i-g~il   97 (691)
                      .+..+..+.+..-+++-.=.++++.|++ .+|.+....+.+-..-.+...+.+|+.|..+||.   +||||-.++ +.+.
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            3333333444444554444566888875 6999999999999999999999999999999973   388776554 4555


Q ss_pred             HHHHHHHHHHhh-c-----CCCCCc--hh--HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-I-----DPLNIP--KR--TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus        98 ~~ig~ill~~s~-~-----~~~~~~--~~--~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      ..++..+...++ +     +.....  .+  ..++++..+.=++.-..+++.-++++|... +.++++|  +.+++-..+
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~-~d~~~~~--Ans~f~~f~  188 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLAR-GDAKKTR--ANSVFSFFM  188 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc-Chhhhhc--cchhHHHHH
Confidence            566666665552 1     111110  11  567777778888888888899999999876 3333333  889999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy195          168 NAGSLISTFITPIF  181 (691)
Q Consensus       168 nlG~~igp~i~~~l  181 (691)
                      .+|..+|..+++++
T Consensus       189 avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  189 AVGNVLGYALGSYL  202 (498)
T ss_pred             Hhcceeeeeccccc
Confidence            99999998887654

>KOG0254|consensus

Probab=96.96  E-value=0.02  Score=65.58  Aligned_cols=141  Identities=13%  Similarity=-0.013  Sum_probs=80.0

Q ss_pred             CchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFC-ERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV   97 (691)
Q Consensus        19 ~~r~~~~l~~~~~~-~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il   97 (691)
                      .+|.....+....+ ...++..+..+.+..++ ..|.+... .....+..+...++..+++++.||+ |||+.++.+.+.
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~-~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK-SAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHHH-hcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34444433333333 33444444444555543 45555332 4444556666677778889999997 999999999999


Q ss_pred             HHHHHHHHHHhh-cCCCC---Cchh-HHHHHHHHH--HHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTA-IDPLN---IPKR-TFTLVGLLL--IAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus        98 ~~ig~ill~~s~-~~~~~---~~~~-~~l~i~~~l--~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      +.++.++++... .....   .... ...+++..+  ..+..|. .+....+.+|.||    .+.|+.+.++-....
T Consensus       369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~-g~v~w~~~sEifp----~~~r~~~~s~~~~~n  440 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW-GPVPWVIVSEIFP----LRLRSKGASLAVAVN  440 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc-ccchhhhhhccCc----HhHHhhhHHHHHHHH
Confidence            999888877652 11110   1111 222222222  2222222 2333457799998    788888877644433

>KOG2615|consensus

Probab=96.96  E-value=0.0086  Score=64.70  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH-HHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYM-HLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL-TIVILSIVYLG  100 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl-~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk-~i~ig~il~~i  100 (691)
                      .+..+....+.....|....+...++ .+.+|+++.++|-+.+...+...+.++.-+...|+..|.-+ .+..++.++.-
T Consensus       262 ~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP  341 (451)
T KOG2615|consen  262 VLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVP  341 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Confidence            34444333333333333334444444 45799999999999988888888888888888888733333 34444444444


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          101 GNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       101 g~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      ..+++.....+       ..++++..+-.+..+...++...++....|    +++||.+.|+......++-++||.++|.
T Consensus       342 ~~llls~~~~~-------~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~----~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  342 AFLLLSLARTP-------VVLYLGSTLKSFSTASVVTCLTSLVHKYGP----QSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             HHHHHhccccc-------hhhhHHHHHHHHHHHHhhHHHHHHHHhcCC----cccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence            44444444444       778899999999999999999999999666    9999999999999999999999999987


Q ss_pred             hhc
Q psy195          181 FRH  183 (691)
Q Consensus       181 l~~  183 (691)
                      +..
T Consensus       411 i~~  413 (451)
T KOG2615|consen  411 IFS  413 (451)
T ss_pred             eEE
Confidence            654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.75  E-value=8.5e-06  Score=91.14  Aligned_cols=133  Identities=14%  Similarity=0.064  Sum_probs=81.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHH--HhhcCCCCCchhHHH
Q psy195           44 LSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLT--VTAIDPLNIPKRTFT  121 (691)
Q Consensus        44 l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~--~s~~~~~~~~~~~~l  121 (691)
                      ...++.+..+.+..  -.......+...++.+++.++.||+ |||++++++.++..+..+.+.  ....+..........
T Consensus       275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (451)
T PF00083_consen  275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS  351 (451)
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            33344445566665  2223344455667778888999997 999999999887777666554  111110000001112


Q ss_pred             HHHHHHHHHHhh-chhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          122 LVGLLLIAVGTG-GIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       122 ~i~~~l~gig~G-~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      ++...+..++.+ +..+....+.+|.||    .+.|+++.++.+....+++++++.+.+.+.+
T Consensus       352 i~~~~l~~~~~~~g~~~~~~~~~~ElfP----t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~  410 (451)
T PF00083_consen  352 IVFLALFFAFFSLGWGPLPWIYTAELFP----TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFN  410 (451)
T ss_pred             ceeeeecccccccccccccccccccccc----ccccccccccccccccccccccccccccccc
Confidence            222222222222 233555578899998    8889999999888888888888887776655

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.45  E-value=0.014  Score=68.81  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHhHHHHHHHhHhcCc--hhHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTG-LCYFFPLFGGIIADTYLG--KFLTIVILSIVY   98 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~lG--Rkk~i~ig~il~   98 (691)
                      .++...+..++...+++++..++|.|+++.+|+++.+++.+.+...+ +..++.+++|+++||+ +  .|+.+.++.++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence            45566677777888888999999999999999999999999988776 6689999999999997 7  456676666555


Q ss_pred             HHHHHH
Q psy195           99 LGGNVL  104 (691)
Q Consensus        99 ~ig~il  104 (691)
                      +++.++
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.44  E-value=0.021  Score=51.51  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=53.8

Q ss_pred             HHHHHHHHhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCchH-HHHHHHHHHHHHHHHHHHh
Q psy195          596 QYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQA-YEFLLFASLMVVDMGVFAL  674 (691)
Q Consensus       596 q~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~  674 (691)
                      ..++.+++.....+......-+..|++.|+.+++.......+|..+...+.....+..+| ..|++.+.+.++..+..++
T Consensus        57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        57 ARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            344555555554455555555566999999999999999999998887777765544444 3456666666666555554


Q ss_pred             hh
Q psy195          675 LA  676 (691)
Q Consensus       675 ~~  676 (691)
                      +.
T Consensus       137 ~~  138 (141)
T TIGR00880       137 LL  138 (141)
T ss_pred             cC
Confidence            43

>PRK03612 spermidine synthase; Provisional

Probab=96.37  E-value=0.23  Score=57.11  Aligned_cols=152  Identities=12%  Similarity=-0.007  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      ++....+++...+..++|-.++   .-.+...+|-+....+.+++++..+..+|+.++|+++++- -|+.. .+-..+.+
T Consensus        16 ~~~l~~~~f~sg~~~L~yEv~~---~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l   90 (521)
T PRK03612         16 RALLLAAVFVCAACGLVYELLL---GTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLAL   90 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHH
Confidence            3333333333333344444333   3334444689999999999999999999999999887553 23322 11111111


Q ss_pred             HHHHHH--HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLL--TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       100 ig~ill--~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ++.+..  .....+.. ......++...++.++..|+..|....+..+..     .++-++..+..|....+|+++|.++
T Consensus        91 ~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-----~~~~g~~~g~ly~~ntlGa~~G~l~  164 (521)
T PRK03612         91 LGGLSALILYAAFAFQ-GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-----DQHLGHNVATVLAADYLGALVGGLA  164 (521)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhhhhhhhHhHHhHHHHHHHHH
Confidence            111111  00111100 000022233344556667776666555554411     1234556677777778888888887


Q ss_pred             HHHhh
Q psy195          178 TPIFR  182 (691)
Q Consensus       178 ~~~l~  182 (691)
                      .+++.
T Consensus       165 ~~~vL  169 (521)
T PRK03612        165 FPFLL  169 (521)
T ss_pred             HHHHH
Confidence            77643

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.09  E-value=0.47  Score=54.16  Aligned_cols=143  Identities=12%  Similarity=0.035  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHhHHHHHHHhHhcCchh-H------HHHHHHHHHHHHH
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDE----KTATVMFHIWTGLCYFFPLFGGIIADTYLGKF-L------TIVILSIVYLGGN  102 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~----~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRk-k------~i~ig~il~~ig~  102 (691)
                      ...|.-..+.+..|..+..+.+-    -.+++..++-.+...+.+|+.+++=.|. +|| |      =+.+|+++..++.
T Consensus       281 w~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f  359 (493)
T PRK15462        281 WAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGF  359 (493)
T ss_pred             HHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHH
Confidence            33444444556777665322111    1245555666666667777777775563 332 1      2567888888887


Q ss_pred             HHHHHhhc-CCCCC-chhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy195          103 VLLTVTAI-DPLNI-PKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI-NAGSLISTFITP  179 (691)
Q Consensus       103 ill~~s~~-~~~~~-~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~-nlG~~igp~i~~  179 (691)
                      +.+.++.. ..-.. .+...+++..++.++|.=+..|.-.+++++.-|    ++.+|..++.+++.. .+|..++..+..
T Consensus       360 ~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP----~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        360 CILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI----PGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77765431 11111 111557788888999999999999999999665    999999999986643 566666555554


Q ss_pred             Hh
Q psy195          180 IF  181 (691)
Q Consensus       180 ~l  181 (691)
                      ..
T Consensus       436 ~~  437 (493)
T PRK15462        436 QT  437 (493)
T ss_pred             Hh
Confidence            43

>KOG0255|consensus

Probab=96.06  E-value=0.51  Score=54.07  Aligned_cols=105  Identities=10%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             HHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCC
Q psy195           69 LCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFI  148 (691)
Q Consensus        69 ~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp  148 (691)
                      ....+....+.+-|++ |||.....+.++..++.+..........  .  ....+...+...+.+........+.+|++|
T Consensus       362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  436 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDDLG--G--WLHWILPLLGKFFIGSAFNLIFLYSAELIP  436 (521)
T ss_pred             HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhccch--h--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4445556668999997 9999999999888888877776532110  0  123333344444455555566888899998


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          149 VPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       149 ~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                          ...|..+.+.......+|++++|.+.....
T Consensus       437 ----t~~r~~~~~~~~~~~~~~~i~ap~~~~~~~  466 (521)
T KOG0255|consen  437 ----TVVRNTAVGAISAAARLGSILAPLFPLLLR  466 (521)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                788999999999999999999998876543

>KOG2816|consensus

Probab=95.97  E-value=0.048  Score=61.68  Aligned_cols=127  Identities=13%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH-HHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Q psy195           43 VLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGG-IIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFT  121 (691)
Q Consensus        43 ~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G-~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l  121 (691)
                      .++.|+...++++..+.+...+...+...++.++.. .+.-.+ |-|+++.+|++...+.....+++..+       ++.
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~~~~-------w~~  334 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFATET-------WMM  334 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHhccc-------hhh
Confidence            346677778999999999999999999999998888 666664 99999999999999999888887544       666


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          122 LVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       122 ~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      +.+..+.++. +...|...++.+.+..    ++++|+.+++....-.+...++|++-+.+.
T Consensus       335 ~~~~v~~~~~-~~~~pa~~s~~s~~v~----~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  335 FAAGVVVALA-GIVFPAIRAFASILVS----PEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hHHHHHHHhh-cchhHHHHhHHHhhcc----cccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            6666665544 4567888888888665    899999999999999998888888766553

>KOG2563|consensus

Probab=95.89  E-value=0.036  Score=61.31  Aligned_cols=150  Identities=22%  Similarity=0.150  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH-HHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL-TIVILSIVYLGG  101 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk-~i~ig~il~~ig  101 (691)
                      +.++++...+....|++....+-.-+ ..-|++...+|.+.....++++++++++|.++||. ...| ++++......++
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHH
Confidence            44444444444555555544433222 24588888999999999999999999999999998 5544 455555555555


Q ss_pred             -HHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhcc-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          102 -NVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQ-FIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       102 -~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~-fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                       +.+......+..    .+.++....+.|....+..|.-..+..|. ||    ..+ +...|...+..++-+.+=.++.+
T Consensus       346 ~~~l~~~t~~~~~----~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP----v~E-~tSsGll~~~gq~f~~~~~~~~~  416 (480)
T KOG2563|consen  346 TLMLLTCTLFLGD----SVIVFTTCGLLGFFGTGYLPIGFELGVETTYP----VAE-GTSSGLLNLSGQIFGVILVFIMG  416 (480)
T ss_pred             HHHHHHhhccCCc----eEehhhhHHHHHHhhcCCCCcceeeeeeeccc----cCC-cccceeEEeehhHHHHHHHHHHH
Confidence             333333222211    04455555566666666666666666664 33    222 33344444444443333344444


Q ss_pred             Hhhc
Q psy195          180 IFRH  183 (691)
Q Consensus       180 ~l~~  183 (691)
                      ...+
T Consensus       417 ~~~~  420 (480)
T KOG2563|consen  417 ILAE  420 (480)
T ss_pred             HHhh
Confidence            4443

>KOG0252|consensus

Probab=95.86  E-value=0.022  Score=62.99  Aligned_cols=132  Identities=11%  Similarity=0.026  Sum_probs=87.2

Q ss_pred             hHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcc
Q psy195           73 FPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPE  151 (691)
Q Consensus        73 ~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~  151 (691)
                      +..++..+.|++ |||+..+.|.+++.+..+.++.+........+. ....+..++..+|=+   ++.-.+-+|.||   
T Consensus       364 Gyw~tv~~id~i-GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FP---  436 (538)
T KOG0252|consen  364 GYWFTVYFIDII-GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFP---  436 (538)
T ss_pred             ceeEEEEEeehh-hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhch---
Confidence            556777889996 999999999988888777666542210111111 223333333334433   334445569887   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          152 QSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       152 ~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                       .+-|+...++.-.+.-.|+.+|.....++.+. . +....+.+..|++.++.++++.+..++
T Consensus       437 -arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~-~-yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  437 -ARVRSTCHGISAASGKAGAIVGAFGFLYLTDH-N-YPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             -HHHhhhhhhHHHHhccchHHHHHHHhhHhhhc-c-CCccccchHHHHHHHHHHHHhHheeEE
Confidence             99999999998888889999988877777652 1 222356778888888777777665443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.38  E-value=0.19  Score=43.06  Aligned_cols=67  Identities=7%  Similarity=-0.135  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh
Q psy195           41 RTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA  109 (691)
Q Consensus        41 ~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~  109 (691)
                      .+.+| .+.++.++|.+++|++.+.-.+++.++.+...++.++. .+++.+..+.++..+.++.+++..
T Consensus        12 TplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   12 TPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34454 45678999999999999999999999999999999996 888889999888888887777653

Note that many members are hypothetical proteins.

>KOG1330|consensus

Probab=94.36  E-value=0.071  Score=59.20  Aligned_cols=87  Identities=16%  Similarity=0.032  Sum_probs=56.8

Q ss_pred             HhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCch-HH-HHHHHHHHHHHHHHHHHhhhccce
Q psy195          603 AEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQ-AY-EFLLFASLMVVDMGVFALLAMRYK  680 (691)
Q Consensus       603 ~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~  680 (691)
                      +|...++-...+.-...|...||++.++++++.-+|..++-++....-.-.. |. -|..-++++++..++..++.++-.
T Consensus       134 GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  134 GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            3444444444444444499999999999999988888765444333222222 32 467888888888888888887776


Q ss_pred             ecCCCcccc
Q psy195          681 YVEEDEDED  689 (691)
Q Consensus       681 ~~~~~~~~~  689 (691)
                      +...||.+.
T Consensus       214 rga~~~~~~  222 (493)
T KOG1330|consen  214 RGARDEVDG  222 (493)
T ss_pred             ccccccccc
Confidence            555555554

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.15  E-value=13  Score=42.44  Aligned_cols=110  Identities=15%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             HHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCC---CCCch---------------------hHHHHHH
Q psy195           69 LCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDP---LNIPK---------------------RTFTLVG  124 (691)
Q Consensus        69 ~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~---~~~~~---------------------~~~l~i~  124 (691)
                      ++.+...+-.++++++ +|.++..+....+..-..++++.-.|.   ++++.                     .|.+.+.
T Consensus        71 ~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slf  149 (491)
T PF03219_consen   71 VAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLF  149 (491)
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence            4556677889999997 999988766555544444443321221   11110                     0111111


Q ss_pred             HHHHH-HHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          125 LLLIA-VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       125 ~~l~g-ig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      -++.- .|.-...-.-..+..|.+.    .++-.+.++.+..+.|+|.+++..+..++.+
T Consensus       150 Yv~aElwgsvvlSlLFW~fAN~itt----~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  150 YVMAELWGSVVLSLLFWGFANEITT----VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111 1111111123556677555    8888999999999999999998887776654

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.42  E-value=15  Score=40.74  Aligned_cols=123  Identities=11%  Similarity=0.068  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhh
Q psy195           60 TVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCV  139 (691)
Q Consensus        60 g~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~  139 (691)
                      +.+..+-.+-+.+..+++-++.+|+ .-+.=+.+..++..+|+++.+++  ++.     +.-+++..+.+++.|.-....
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~--~~v-----~~~l~Gv~las~ssg~GE~tf  133 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS--PSV-----WVRLLGVVLASLSSGLGEVTF  133 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec--cch-----hHHHHHHHHHhhhhhhhHHHH
Confidence            4455555566677777888888886 53333444555667777776664  222     666788899999998877776


Q ss_pred             hhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHH
Q psy195          140 SSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLM  205 (691)
Q Consensus       140 ~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~  205 (691)
                      -++.+ .++    +    ...+.+..+...++++|+..-..+...      ..+.+..+.+...+-
T Consensus       134 L~lt~-~y~----~----~~l~~wssGTG~aGl~Ga~~y~~lT~~------g~s~~~tll~~~~lp  184 (402)
T PF02487_consen  134 LSLTH-FYG----K----SSLSAWSSGTGGAGLVGALYYLGLTTL------GLSPRTTLLIMLVLP  184 (402)
T ss_pred             HHHHH-hcC----c----cccccccCCcChhhHHHHHHHHHHHHh------CcCHHHHHHHHHHHH
Confidence            66544 454    2    234555556666666666543333321      234455555555443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.20  E-value=4.3  Score=45.62  Aligned_cols=133  Identities=11%  Similarity=-0.029  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhh-cCCCC-Cchh-
Q psy195           42 TVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTA-IDPLN-IPKR-  118 (691)
Q Consensus        42 ~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~-~~~~~-~~~~-  118 (691)
                      ..+..|+..+ |+++...|..-+...+....+.++..++.+|+ |..|+=+++.....+...+...+- .+... .... 
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            3477888765 99999999999999999999999999999997 999988888775544333322221 11110 0011 


Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPI  180 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~  180 (691)
                      ..++.+.++-=+|-=++--++.-++=|..|    +++||...+......++--++...++-.
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~----~~~Rg~v~gvq~sl~~lf~ll~~~~~ii  414 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVP----ESERGAVSGVQNSLQSLFELLSFVLTII  414 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCC----HHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444555555446666666777777777665    8999999999988888888876665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.10  E-value=1.6  Score=49.55  Aligned_cols=68  Identities=7%  Similarity=0.057  Sum_probs=53.4

Q ss_pred             eehhhHHHHHHHHHhHhhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHH
Q psy195          590 MLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFL  659 (691)
Q Consensus       590 ~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~~~~~~  659 (691)
                      +.++..--+++|++|.... ......++-.|++.|++++|.+.....+|.++...+.+. ...-+|..|.
T Consensus       115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence            3444555677888999888 888888999999999999999999999999998777776 3333455443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.01  E-value=0.028  Score=64.91  Aligned_cols=155  Identities=15%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHhHHHHHHHhHhc-CchhHHHHHHHHHHHHHH
Q psy195           25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTG-LCYFFPLFGGIIADTY-LGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~-lGRkk~i~ig~il~~ig~  102 (691)
                      ...+...++.+..-+..+++|.|++.+++.++++++.+.+...+ +..++.++||++..|+ ++.|+.+.+..+..+++.
T Consensus       309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            44455566677777888999999999999999999999877666 7778999999999997 345666665555544444


Q ss_pred             HHHH---Hh---h-------cCC---------CC----------------Cc-----h---h-HHHHHHHHHHHHHhhch
Q psy195          103 VLLT---VT---A-------IDP---------LN----------------IP-----K---R-TFTLVGLLLIAVGTGGI  135 (691)
Q Consensus       103 ill~---~s---~-------~~~---------~~----------------~~-----~---~-~~l~i~~~l~gig~G~~  135 (691)
                      ++..   +.   .       .+.         .+                ..     .   . ..+.+..++..+..+..
T Consensus       389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~  468 (539)
T PF03137_consen  389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS  468 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence            3311   10   0       010         00                00     0   1 23334444444444444


Q ss_pred             hhhhhhhhhccCCCcchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Q psy195          136 KPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI-NAGSLISTFITPIFRH  183 (691)
Q Consensus       136 ~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~-nlG~~igp~i~~~l~~  183 (691)
                      ........-+.++    +++|+.+.|+..+.. -+|.+-||++-|.+.+
T Consensus       469 ~~p~~~i~LR~V~----~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD  513 (539)
T PF03137_consen  469 QVPSTLITLRCVP----PEQRSFALGVQWLIIRLLGFIPGPIIFGAIID  513 (539)
T ss_dssp             -------------------------------------------------
T ss_pred             ccchheeeeccCC----hhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence            4444444555454    888999999887766 5577888888887776

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.28  E-value=3.7  Score=46.43  Aligned_cols=134  Identities=13%  Similarity=0.085  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchh-------HHHHHHHHHHHHHHHHHHHhh
Q psy195           41 RTVLSLYMHLVLLYD----EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKF-------LTIVILSIVYLGGNVLLTVTA  109 (691)
Q Consensus        41 ~~~l~~yl~~~lg~s----~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRk-------k~i~ig~il~~ig~ill~~s~  109 (691)
                      .+.+..|..+..+-+    +-..++..+.-.+.-.+++++..++--+. ||+       .-+-+|..++..+.+++..+.
T Consensus       304 ~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~  382 (498)
T COG3104         304 GSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAG  382 (498)
T ss_pred             cchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            345666665432211    11223444444555556677777777663 443       234556666666666655541


Q ss_pred             cCCC--CC-chhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          110 IDPL--NI-PKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       110 ~~~~--~~-~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ...-  .. .+.+.++.+.+++++|.=+.+|.-.++....-|    +.-.+..++.+.+....|..++..+.+
T Consensus       383 ~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP----~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         383 IWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP----PALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            1101  11 111778889999999999999999999999555    888999999999988888887766655

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.91  E-value=25  Score=39.50  Aligned_cols=179  Identities=9%  Similarity=-0.007  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGN  102 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~  102 (691)
                      .+.+...-++.+.+--+.-...+.|+.+-++-+-.-++..-..-.+...++.+..|...||. .|.+++..+.+..-++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            34444455555555444444466777665444444444444455666778888889999997 99999888766443332


Q ss_pred             HH----HHHh-hcCCCCC--chh-HHHHHHHHHH-HHHhhchhhhhhhhhhccCCCcc--hhhhHHHHHHHHHHHHHHHH
Q psy195          103 VL----LTVT-AIDPLNI--PKR-TFTLVGLLLI-AVGTGGIKPCVSSFGGDQFIVPE--QSAQLEKFFSLFYFSINAGS  171 (691)
Q Consensus       103 il----l~~s-~~~~~~~--~~~-~~l~i~~~l~-gig~G~~~~~~~~~~ad~fp~~~--~~~~rg~~~~~~~~~~nlG~  171 (691)
                      ++    +... ..+....  ... ..+++...+. ++..=...+..-++--|+....+  ++..+.+.-....=.=-+--
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence            22    2111 1111100  111 2222222222 22221222222333334443222  34444444444433334567


Q ss_pred             HHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHH
Q psy195          172 LISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       172 ~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                      ++||.+.+.+..       ..+...+..+.++..+++.
T Consensus       163 llaPl~vG~l~t-------~~s~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  163 LLAPLFVGLLMT-------FASPVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHHHHHHHHHhh-------ccCHHHHHHHHHHHHHHHH
Confidence            789999998876       3455555444444444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098|consensus

Probab=91.38  E-value=9  Score=43.30  Aligned_cols=106  Identities=20%  Similarity=0.157  Sum_probs=70.1

Q ss_pred             HHHHHHHHhHHHHHHHhH---hcCchhHHHHHHHHHHHHHHHHHHHhhcCC---CCC---------chhHHHHHHHHHHH
Q psy195           65 IWTGLCYFFPLFGGIIAD---TYLGKFLTIVILSIVYLGGNVLLTVTAIDP---LNI---------PKRTFTLVGLLLIA  129 (691)
Q Consensus        65 ~~~i~~~i~~l~~G~LaD---r~lGRkk~i~ig~il~~ig~ill~~s~~~~---~~~---------~~~~~l~i~~~l~g  129 (691)
                      ....+..++..+.+.+++   ++ ||++++.++.++..++.++.-+. .|.   +.+         +.+....+.-++.|
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~-~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS-FPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc-ccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            344555566666666664   45 89999999999888887776554 121   111         11234555667889


Q ss_pred             HHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          130 VGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       130 ig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ++-++.......++++.+|     ++|..+++++.+--.+++.++...
T Consensus       365 ~~D~~~~t~~~~ii~~~~~-----~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLYP-----DDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999874     555666666666556555544443

>KOG4332|consensus

Probab=90.14  E-value=2.9  Score=43.59  Aligned_cols=138  Identities=13%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhHhcCchhH---HHHHHHHHHHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHhh
Q psy195           59 ATVMFHIWTGLCYFFPLFGGIIADTYLGKFL---TIVILSIVYLGGNVLLTVTA--IDPLNIPKRTFTLVGLLLIAVGTG  133 (691)
Q Consensus        59 ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk---~i~ig~il~~ig~ill~~s~--~~~~~~~~~~~l~i~~~l~gig~G  133 (691)
                      -|.+.+.|+.++++++-+...+..|-  |.|   .+.+..++......+..+..  .|+  ..+...-+++..+.-.+.|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~--kes~~~s~i~F~~~E~cvG  359 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILTSSVSPS--KESPSESLIGFCLFEACVG  359 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHHhccCCC--cCCchHHHHHHHHHHHHHh
Confidence            37888888888888887777776663  322   33333333333322222221  222  1111445778888888999


Q ss_pred             chhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          134 GIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       134 ~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      .++|.+.-+=.+..|    .+.|+..++++..-.|+-..++-   ..+..  ..+  ..+-|..|.++.+.+.++.+.
T Consensus       360 lfwPSimkmRsqyIP----EearstimNfFRvPLnifvClvL---ynlh~--~~~--p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  360 LFWPSIMKMRSQYIP----EEARSTIMNFFRVPLNIFVCLVL---YNLHV--DAF--PTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hcchHHHHHHHhhCC----HHHHhhhhhheechhhHhhhhhh---eeccc--ccC--ccccchhhhhhHHHHHHHHHH
Confidence            999999998888777    88899999999887775444221   11111  111  245678898888877766543

>KOG3626|consensus

Probab=89.11  E-value=1.5  Score=51.91  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHhHHHHHHHhHhc-CchhHHHHHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTG-LCYFFPLFGGIIADTY-LGKFLTIVILSI   96 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~-lGRkk~i~ig~i   96 (691)
                      +...++...++..++-|..+++|.|+.+++|.+.+.|..+.+...+ +..+|.++||++.-|+ ++-|.+..+.++
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~  469 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV  469 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence            3355667778888888999999999999999999999999876655 5568889999999886 344555544433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=87.10  E-value=61  Score=36.93  Aligned_cols=151  Identities=15%  Similarity=0.158  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH-HHHHhHHHHHHHhHhcCchhHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYD---EKTATVMFHIWTG-LCYFFPLFGGIIADTYLGKFLTIVILSI   96 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s---~~~ag~i~~~~~i-~~~i~~l~~G~LaDr~lGRkk~i~ig~i   96 (691)
                      +.+..+.+..+|..+.|+.+..     +.+.+.++   +.....+-..... ++.+..++-+++.+++ -|.+++.+.+.
T Consensus        27 ~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~~  100 (509)
T COG3202          27 KKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHHH
Confidence            3444555555555555543332     44445444   3333444444444 6778888999999997 99998876655


Q ss_pred             HHHHHHHHHHHhhcCC---CCCc------------------------hh-HHHHHHHHHHHHHhhchhhhhhhhhhccCC
Q psy195           97 VYLGGNVLLTVTAIDP---LNIP------------------------KR-TFTLVGLLLIAVGTGGIKPCVSSFGGDQFI  148 (691)
Q Consensus        97 l~~ig~ill~~s~~~~---~~~~------------------------~~-~~l~i~~~l~gig~G~~~~~~~~~~ad~fp  148 (691)
                      .+..-.+++++.-.|.   ++++                        +. ..+++.-=+.  |.=..+-.-..+.-|+..
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELW--gslV~S~lFw~faNeitt  178 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELW--GSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
Confidence            5544444444332221   0110                        00 1111111111  111111122345556554


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          149 VPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       149 ~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                          .++-.|+++.++.+.|++..++..+..++.+
T Consensus       179 ----~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         179 ----IEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             ----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                7888999999999999999999888887754

>KOG3574|consensus

Probab=85.99  E-value=33  Score=37.90  Aligned_cols=153  Identities=12%  Similarity=0.123  Sum_probs=93.3

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhH-----hcCchhHH
Q psy195           16 QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIAD-----TYLGKFLT   90 (691)
Q Consensus        16 ~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaD-----r~lGRkk~   90 (691)
                      .++.++.+.++++..+....=+ |....+|..++ .-|.|-++.+....++  --+-.-++...+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            5566677777777666654433 45455666665 5577777766433222  12233466777888     87 99998


Q ss_pred             HHHHHHHHHHHHHHHHHhhc--CCCCCchh----HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHH
Q psy195           91 IVILSIVYLGGNVLLTVTAI--DPLNIPKR----TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY  164 (691)
Q Consensus        91 i~ig~il~~ig~ill~~s~~--~~~~~~~~----~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~  164 (691)
                      -++-+ -+.+|.+++.++..  ++...++.    ..+....+++-+..+.--.++-.+.-.+..    +++.|-+...+.
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs----~e~lgyaST~q~  175 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLS----RENLGYASTCQS  175 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcC----HhhcCchhHHHH
Confidence            76543 34566666666531  22221111    223334455556666655566666666554    788888888888


Q ss_pred             HHHHHHHHHHHHHH
Q psy195          165 FSINAGSLISTFIT  178 (691)
Q Consensus       165 ~~~nlG~~igp~i~  178 (691)
                      .+.+.|.++|..+.
T Consensus       176 Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  176 VGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHhhhHHhhccee
Confidence            89999999887643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=85.92  E-value=70  Score=36.49  Aligned_cols=144  Identities=13%  Similarity=0.050  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCch-----------h-----HHHHHHHHHHHHHHHHHHHhh-----cC
Q psy195           53 LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGK-----------F-----LTIVILSIVYLGGNVLLTVTA-----ID  111 (691)
Q Consensus        53 g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGR-----------k-----k~i~ig~il~~ig~ill~~s~-----~~  111 (691)
                      -.+..|+.-....+.+++.++.+++|.+...+ ..           .     ..+.+..++..+.+.+.....     .|
T Consensus       157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~  235 (472)
T TIGR00769       157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYF-SKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDP  235 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            46778888889999999999988888776664 31           1     122222222222222221110     11


Q ss_pred             CCC----------C------------chhHHHHHHHH--HHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195          112 PLN----------I------------PKRTFTLVGLL--LIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus       112 ~~~----------~------------~~~~~l~i~~~--l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      ...          +            .+.....++.+  +.++............+.+++|   ++++|+..++-+....
T Consensus       236 ~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p---~~~~~~~f~g~~~~~~  312 (472)
T TIGR00769       236 RSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP---SPNEYSAFMGDFSTWT  312 (472)
T ss_pred             cccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Confidence            100          0            01122222222  2345555566667777888887   5678899999988888


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHH
Q psy195          168 NAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFL  207 (691)
Q Consensus       168 nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l  207 (691)
                      ++..++...+.+.+.+       ..||.....+..+++++
T Consensus       313 gi~tl~~~l~~~~l~~-------~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       313 GVVSVTMMLLSGNVIR-------KYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHH
Confidence            8877655555566666       46798666665555544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3097|consensus

Probab=83.13  E-value=13  Score=40.17  Aligned_cols=112  Identities=13%  Similarity=0.027  Sum_probs=63.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      .-|.++.+-...+....+|-+. .++......++|.  ...+.    ........+++.+.+..++ |-|+++.++...+
T Consensus        27 ~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~--~sl~~----~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y   98 (390)
T KOG3097|consen   27 ILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGT--VSLGA----LYLSLIDSSMFMPLLIRFL-GTKWTMVLAVFPY   98 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCccc--chhhh----hhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence            3456666665555544444444 4555554433332  22222    2223334445555777776 9999998876555


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhcc
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQ  146 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~  146 (691)
                      ..-.....   .|.+     ..++-+-.+.|+|.|..++.-.+++++.
T Consensus        99 ~lyiA~Nl---~pr~-----~tlVPa~~~~G~aa~p~W~SkgtYlT~~  138 (390)
T KOG3097|consen   99 ALYIAANL---EPRY-----ETLVPAGLVLGMAAGPIWASKGTYLTPM  138 (390)
T ss_pred             HHHHHhhc---chhH-----HhhccHHHhhccccccccccCcceecHH
Confidence            44332222   2222     4566677788999998888777777663

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=82.46  E-value=17  Score=40.44  Aligned_cols=60  Identities=10%  Similarity=-0.031  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy195          119 TFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFR  182 (691)
Q Consensus       119 ~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~  182 (691)
                      +..++..+..|+..|....+....+.+..+    +++|...++...++-++|..++.+++-.+.
T Consensus       336 ~ivf~lif~eGLlGGa~YVNtF~~I~~~~~----~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  336 WIVFVLIFYEGLLGGASYVNTFYRISEEVP----PEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            566667777899999999999999999665    889999999999999999988888776553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	691
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-43
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		3e-08
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		2e-12

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 188/403 (46%), Gaps = 76/403 (18%)
Query: 10  MLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYD------EKTATVMF 63
           M SP + PK+P+ + +I+ +E CERF +YGMR +L+ ++   LL           A  +F
Sbjct: 1   MNSPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60
Query: 64  HIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV 123
           H +    YFFPL GG IAD + GK+ TI+ LS++Y  G+  L +          + F   
Sbjct: 61  HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI-----FEHSVQGF-YT 114
Query: 124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH 183
           GL LIA+G+GGIKP VSSF GDQF    +S   +K F +FYF+IN GS  ++   P+   
Sbjct: 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA-QKAFDMFYFTINFGSFFASLSMPLL-- 171
Query: 184 DMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKP------------------- 224
            ++ FG      +AFG+P +LMF+A + F +G+  Y    P                   
Sbjct: 172 -LKNFGAA----VAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226
Query: 225 ---KGNVALEV-----------------------FQCTIRAIKNKFKTKKSERTKEHWLD 258
              KGN+ L +                         C +  +        S +     L+
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQ-----LE 281
Query: 259 YANDKYDQGTIEDIKTXXXXXXXXXXXXXXWALFDQQGSRWTFQANRMDGRVFGTSLEIK 318
            A   +    ++ +++              W+LFDQ+ S W  QAN M    +      +
Sbjct: 282 RARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQW-----FE 336
Query: 319 PDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVG 360
           P  MQ +NPLL++  IP   +V+YP +++ G+    LRK+  G
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAG 379

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 580 LKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGN 639
           L  D  + +S+ W    Y ++T  E++ S TG EFA++QAP +MK  + + W L+   GN
Sbjct: 395 LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGN 454
Query: 640 LIVAI----VAEAKIFEN--------QAYEFLLFASLMVVDMGVFALLAMRYK 680
           L V +    V    + E          A++   FA   ++   VFAL A  Y+
Sbjct: 455 LWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQ 507

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 28  INEFCERFCYYGMRTVLSLYMHLV-----LLYDEKTATVMFHIWTGLCYFFPLFGGIIAD 82
           + E  ERF YYGMR +L  YM  +     L     TA  +  I+  + Y     GG +AD
Sbjct: 20  MTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD 79
Query: 83  TYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVG-LLLIAVGTGGIKPCVSS 141
             +G          V+ GG VL+ +  I  L +P     L G ++LI +GTG +KP VS+
Sbjct: 80  RIIGA------RPAVFWGG-VLIMLGHIV-LALPFGASALFGSIILIIIGTGFLKPNVST 131
Query: 142 FGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVP 201
             G  +   E   + +  FS+F F IN G+    FI P+     Q   + A + +AF + 
Sbjct: 132 LVGTLY--DEHDRRRDAGFSIFVFGINLGA----FIAPLIVGAAQ---EAAGYHVAFSLA 182
Query: 202 ALLMFLAIIVFIIG 215
           A+ MF+ ++V+  G
Sbjct: 183 AIGMFIGLLVYYFG 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
2xut_A	524	Proton/peptide symporter family protein; transport	1e-104
2xut_A	524	Proton/peptide symporter family protein; transport	3e-19
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	7e-44
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  325 bits (836), Expect = e-104
 Identities = 126/424 (29%), Positives = 200/424 (47%), Gaps = 66/424 (15%)

Query: 10  MLSPSEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLY------DEKTATVMF 63
           M SP + PK+P+ + +I+ +E CERF +YGMR +L+ ++   LL           A  +F
Sbjct: 1   MNSPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60

Query: 64  HIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLV 123
           H +    YFFPL GG IAD + GK+ TI+ LS++Y  G+  L +                
Sbjct: 61  HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV------QGFYT 114

Query: 124 GLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH 183
           GL LIA+G+GGIKP VSSF GDQF      +  +K F +FYF+IN GS  ++   P+   
Sbjct: 115 GLFLIALGSGGIKPLVSSFMGDQF-DQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--- 170

Query: 184 DMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNK 243
                 +     +AFG+P +LMF+A + F +G+  Y    P+             A+  K
Sbjct: 171 ----LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226

Query: 244 FKTKKS----------------------------------------ERTKEHWLDYANDK 263
            + K +                                               L+ A   
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS 286

Query: 264 YDQGTIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQ 323
           +    ++ ++++LRIL+LF  +  FW+LFDQ+ S W  QAN M    +      +P  MQ
Sbjct: 287 HPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQW-----FEPAMMQ 341

Query: 324 LINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAALSFVVSALVEFNIRAHS 382
            +NPLL++  IP   +V+YP +++ G+    LRK+  G  +  LS++V   ++  +   S
Sbjct: 342 ALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGS 401

Query: 383 QIAP 386
            ++ 
Sbjct: 402 ALSI 405

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)

Query: 583 DSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIV 642
           D  + +S+ W    Y ++T  E++ S TG EFA++QAP +MK  + + W L+   GNL V
Sbjct: 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWV 457

Query: 643 AIVAEA------------KIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEEDEDED 689
            +   +                  A++   FA   ++   VFAL A  Y+  +      
Sbjct: 458 LLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQAT 516

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  163 bits (415), Expect = 7e-44
 Identities = 84/416 (20%), Positives = 146/416 (35%), Gaps = 90/416 (21%)

Query: 20  PKAVFFIVINEFCERFCYYGMRTVLSLYMHLV-----LLYDEKTATVMFHIWTGLCYFFP 74
           P  +  + + E  ERF YYGMR +L  YM  +     L     TA  +  I+  + Y   
Sbjct: 12  PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG 71

Query: 75  LFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGG 134
             GG +AD  +G    +    ++ + G+++L +           +     ++LI +GTG 
Sbjct: 72  TIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-------PFGASALFGSIILIIIGTGF 124

Query: 135 IKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEACF 194
           +KP VS+  G  +   E   + +  FS+F F IN G+ I+  I    +      G    F
Sbjct: 125 LKPNVSTLVGTLY--DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAF 179

Query: 195 PLA----------------------------------------FGVPALLMFLAIIVFII 214
            LA                                            A+  F+AIIV + 
Sbjct: 180 SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMN 239

Query: 215 GKPMYKINKPKGNVALEVFQCTI---RAIKNKFKTKKSERTKEHWLDYANDKYDQGTIED 271
                 +      + +      +     + +  K   +E  +                  
Sbjct: 240 LVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR------------------ 281

Query: 272 IKTLLRILLLFVPLPIFWALFDQQGSRWTFQANRM-DGRVFGTSLEIKPDQMQLINPLLI 330
              ++  + LF+   +FWA+ +Q        A    D   F  S        Q +NPL I
Sbjct: 282 ---VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS------WFQSLNPLFI 332

Query: 331 LTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRAHSQIAP 386
           + + P F ++          + P  K  VG + A LSF++ A+         +++P
Sbjct: 333 MLYTPFFAWLWTAWKKN-QPSSP-TKFAVGLMFAGLSFLLMAIPGALYGTSGKVSP 386

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 23/94 (24%), Positives = 42/94 (44%)

Query: 583 DSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIV 642
            +S KVS LWL   + ++   E++ S  G       AP +  S + + W L+++ G+ + 
Sbjct: 379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438

Query: 643 AIVAEAKIFENQAYEFLLFASLMVVDMGVFALLA 676
           A +      +++   F  F    VV   V   L+
Sbjct: 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLS 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 45/353 (12%), Positives = 97/353 (27%), Gaps = 96/353 (27%)

Query: 391 FSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPY-VLN 449
               I +  + D +  S       LR    L          Q F    E      Y  L 
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKF---VEEVLRINYKFLM 95

Query: 450 KTFQSSVLGADGKITEYYLIRDEKQ-------QAHLKRLGEFHDLRNINSSLKMQ---IL 499
              ++           Y   RD          + ++ RL  +  LR     L+     ++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 500 YGSELQGKRITLESDDGFYQDIDLPTGACYTEYIE-GIPAGVY--EVRSENKVLKSNMEL 556
            G    GK               +    C +  ++  +   ++   +++ N   ++ +E+
Sbjct: 156 DGVLGSGKTW-------------VALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEM 201

Query: 557 QDDNVYVLNLNTEASPEH-RTARLLKDDSSNKVSMLWLFPQY----II---ITAAEIMFS 608
               +Y ++ N  +  +H    +L       ++  L     Y    ++   +  A+    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--- 258

Query: 609 ITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLI----------VAIVAEAKIF-ENQAYE 657
              F        +          LLTT F  +           +++   +     ++   
Sbjct: 259 WNAFNL---SCKI----------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 658 FLLFASLMVVDMGVFAL-----------LAM-------------RYKYVEEDE 686
             L      +D     L           L++              +K+V  D+
Sbjct: 306 --LLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 5e-06
 Identities = 78/568 (13%), Positives = 155/568 (27%), Gaps = 167/568 (29%)

Query: 16  QPKYPKAVFFIVINEFCERF-CYY---GMRTVLS--LYMHLVLLYDEKTATVMFHIWTGL 69
           Q +Y K +  +  + F + F C       +++LS     H+++  D  + T+    WT L
Sbjct: 15  QYQY-KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWT-L 71

Query: 70  C-------YFFPLFGGIIADTYLGKFLTIVI---------LSIVYLGG-NVLLT-VTAID 111
                     F     ++   Y  KFL   I         ++ +Y+   + L        
Sbjct: 72  LSKQEEMVQKF--VEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 112 PLNIP--KRTFTLVGLLL-------IAV-GTGGI-KPCVSSFGGDQFIVPEQSAQLEKFF 160
             N+   +    L   LL       + + G  G  K  V+                 K  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----------DVCLSYKVQ 177

Query: 161 SLFYFSINAGSLISTF-ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMY 219
               F I        F +                         +L  L  +++ I     
Sbjct: 178 CKMDFKI--------FWLN---------LKNCNS------PETVLEMLQKLLYQIDPNWT 214

Query: 220 KINKPKGNVALEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIE--DIKTLLR 277
             +    N+ L      I +I+ + +     +  E+ L    +  +       ++    +
Sbjct: 215 SRSDHSSNIKLR-----IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC--K 267

Query: 278 ILLLFVPLPIFWAL-------FDQQGSRWTFQANRMDGRVFGTSLEIK----PDQMQLIN 326
           ILL      +   L               T   + +   +    L+ +    P ++   N
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTN 326

Query: 327 PLLILTF-------IPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIR 379
           P  +          +  +    +   DK              L   +   ++ L     R
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDK--------------LTTIIESSLNVLEPAEYR 372

Query: 380 AHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAAL-F 438
                           ++ +    VF                   +IP   T   + + F
Sbjct: 373 KM--------------FDRL---SVF-----PPSA----------HIP---TILLSLIWF 397

Query: 439 EPSTSCP-YVLNKTFQSSVLGADGKITEYY---LIRDEKQQAHLKRLGEFHDLRNINSSL 494
           +   S    V+NK  + S++    K +      +  + K    L+     H  R+I    
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV--KLENEYALH--RSIVDHY 453

Query: 495 KMQILYGSELQGKRITLESDDG-FYQDI 521
            +   +        +     D  FY  I
Sbjct: 454 NIPKTF----DSDDLIPPYLDQYFYSHI 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 89/578 (15%), Positives = 170/578 (29%), Gaps = 201/578 (34%)

Query: 230 LEVFQCTIRAIKNKFKTKKSERTKEHWLDYANDKYDQGTIEDI----KTLLRILLLFVPL 285
           L VF+    A  + F  K  +       D       +  I+ I      +   L LF   
Sbjct: 22  LSVFE---DAFVDNFDCKDVQ-------DMPKSILSKEEIDHIIMSKDAVSGTLRLF--- 68

Query: 286 PIFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIY--- 342
              W L  +Q          M  +     L    +   L++P+      P     +Y   
Sbjct: 69  ---WTLLSKQ--------EEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 343 --------PLVDKCGLNRP-----LRK----------LTVGGL-------LAA---LSFV 369
                    +  K  ++R      LR+          + + G+       +A    LS+ 
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 370 VSALVEFNI-------------------RAHSQIAPQ-----DRHFSLRI-YNSMDC--- 401
           V   ++F I                   +   QI P      D   ++++  +S+     
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 402 DFVFHSPLKN----------ERVLRAMD----MLAL-------NNIPINGTQHFA----- 435
             +   P +N           +   A +    +L         + +    T H +     
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 436 ---------ALFE----------PSTSC---PYVLNKTFQSSVLGA---DGKIT-EYYLI 469
                    +L            P       P  L      S++     DG  T + +  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNW-- 347

Query: 470 RDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQG--KRITLESDDGFYQDIDLPTGA 527
               +  +  +L        I SSL   +L  +E +    R+++     F     +PT  
Sbjct: 348 ----KHVNCDKLTTI-----IESSLN--VLEPAEYRKMFDRLSV-----FPPSAHIPTIL 391

Query: 528 CYTEYIEGIPAGVYEVRSENKVLKSNMELQDDN-----VYVLNLNTEASPE-----HRTA 577
               + + I + V  V   NK+ K ++  +        +  + L  +   E     HR+ 
Sbjct: 392 LSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 578 ----RLLKDDSSNKVSMLWL---FPQYI-----IITAAE--IMFSITGFEFAFTQAPVSM 623
                + K   S+ +   +L   F  +I      I   E   +F +   +F F +  +  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-- 507

Query: 624 KSAVSACWLLTTAFGNLIVAIVAEAKIFENQA-YEFLL 660
           +   +A     +    L      +  I +N   YE L+
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	691
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.91
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.26
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.16
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.93
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.76
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.55
2xut_A	524	Proton/peptide symporter family protein; transport	97.72

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=4.9e-30  Score=289.04  Aligned_cols=446  Identities=35%  Similarity=0.660  Sum_probs=293.4

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhH
Q psy195           16 QPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLL------YDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFL   89 (691)
Q Consensus        16 ~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg------~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk   89 (691)
                      .++++|.++.+.+..++..++++++.++++.|+++++|      ++..+++++.+.+.++..++.+++|+++||++|||+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A            7 APKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            34567778888888999999999999999999999999      999999999999999999999999999999449999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhH---HHHHHHHHHH
Q psy195           90 TIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQL---EKFFSLFYFS  166 (691)
Q Consensus        90 ~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~r---g~~~~~~~~~  166 (691)
                      ++.++.++..++.+++..+. .+.     +.++++|++.|++.|...++..++++|++|    +++|   ...+++++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~  156 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFE-HSV-----QGFYTGLFLIALGSGGIKPLVSSFMGDQFD----QSNKSLAQKAFDMFYFT  156 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-SCH-----HHHHHHHHHHHHHHHTTHHHHHHHHHHTCS----TTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-ccH-----HHHHHHHHHHHHhccccchhHHHHHHHHcC----ccchHHHHHHHHHHHHH
Confidence            99999999999888877753 012     778899999999999999999999999998    5555   4556669999


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcchhHHHHHHHHHhhhccc
Q psy195          167 INAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINKPKGNVALEVFQCTIRAIKNKFKT  246 (691)
Q Consensus       167 ~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~vi~~~i~~~~~~  246 (691)
                      .++|.+++|.+++++.+       ..+|+..|.+.+++.++++++++...++.+..+|++++..+..+.+....+++...
T Consensus       157 ~~~g~~~g~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (524)
T 2xut_A          157 INFGSFFASLSMPLLLK-------NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG  229 (524)
T ss_dssp             HHHHHHHHHHTSTHHHH-------TSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTT
T ss_pred             HHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcc
Confidence            99999999999998876       46799999988877766666655544444333332222112111111111111100


Q ss_pred             ccc-------------------c-------------------ccccch--hhhcccccCCccHHHHHHHHHHHHHHHHHH
Q psy195          247 KKS-------------------E-------------------RTKEHW--LDYANDKYDQGTIEDIKTLLRILLLFVPLP  286 (691)
Q Consensus       247 ~~~-------------------~-------------------~~~~~~--l~~~~~~~~~~~v~~~k~~l~~l~l~~~~~  286 (691)
                      .+.                   .                   ..+..|  +++.+....+...++.|+.+..+.++....
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (524)
T 2xut_A          230 KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVT  309 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSH
T ss_pred             cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHH
Confidence            000                   0                   000011  111111112222233455555555666566


Q ss_pred             HHHHHHhcccchHHHHHHHhcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHH
Q psy195          287 IFWALFDQQGSRWTFQANRMDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLN-RPLRKLTVGGLLAA  365 (691)
Q Consensus       287 ~~~~~~~q~~s~~~~~~~~~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~-s~l~~i~iG~ll~~  365 (691)
                      .++..+.+..+.+..+...++...    + .+.+.+...+.+..++..|+.+++.+|+++|++.+ ++.+++.+|.++.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  384 (524)
T 2xut_A          310 PFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITG  384 (524)
T ss_dssp             HHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHH
T ss_pred             HHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHH
Confidence            666667777777777665543221    1 24667778888888888999998778888888655 66777888888887


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCc
Q psy195          366 LSFVVSALVEFNIRAHSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCP  445 (691)
Q Consensus       366 ~s~li~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (691)
                      +++++++..+...                                                                   
T Consensus       385 ~~~~~~~~~~~~~-------------------------------------------------------------------  397 (524)
T 2xut_A          385 LSWIVVGTIQLMM-------------------------------------------------------------------  397 (524)
T ss_dssp             HHHHTTTTTTTTT-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHh-------------------------------------------------------------------
Confidence            7765543322100                                                                   


Q ss_pred             ccccccceeeeeccCCcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCC
Q psy195          446 YVLNKTFQSSVLGADGKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPT  525 (691)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (691)
                                                                                                      
T Consensus       398 --------------------------------------------------------------------------------  397 (524)
T 2xut_A          398 --------------------------------------------------------------------------------  397 (524)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccceeecCcccceeeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhH
Q psy195          526 GACYTEYIEGIPAGVYEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEI  605 (691)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei  605 (691)
                                                                               ..+...+..|+++.+++.++++.
T Consensus       398 ---------------------------------------------------------~~~~~~~~~~~~~~~~l~g~~~~  420 (524)
T 2xut_A          398 ---------------------------------------------------------DGGSALSIFWQILPYALLTFGEV  420 (524)
T ss_dssp             ---------------------------------------------------------TTTCCCCSHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------cCCCCcCHHHHHHHHHHHHHHHH
Confidence                                                                     00001257889999999999999


Q ss_pred             hhcchheeeecccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCc--h----------HHHHHHHHHHHHHHHHHHH
Q psy195          606 MFSITGFEFAFTQAPVSMKSAVSACWLLTTAFGNLIVAIVAEAKIFEN--Q----------AYEFLLFASLMVVDMGVFA  673 (691)
Q Consensus       606 ~~~~~~~ef~~~~aP~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~--~----------~~~~~~~a~~~~~~~~~~~  673 (691)
                      +..+.......+.+|+++|+.++|++.+..++|+.++..+.....+..  +          .+.|+++++++++..++++
T Consensus       421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (524)
T 2xut_A          421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA  500 (524)
T ss_dssp             HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988887665421  1          2237888888999988888


Q ss_pred             hhhccceecCCCcc
Q psy195          674 LLAMRYKYVEEDED  687 (691)
Q Consensus       674 ~~~~~~~~~~~~~~  687 (691)
                      ++.++++.++.++.
T Consensus       501 ~~~~~~~~~~~~~~  514 (524)
T 2xut_A          501 LYARSYQMQDHYRQ  514 (524)
T ss_dssp             --------------
T ss_pred             HHHHHhccchhhhh
Confidence            88888887665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=6.5e-28  Score=269.19  Aligned_cols=443  Identities=24%  Similarity=0.370  Sum_probs=306.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHh-cCch
Q psy195           14 SEQPKYPKAVFFIVINEFCERFCYYGMRTVLSLYMHLV-----LLYDEKTATVMFHIWTGLCYFFPLFGGIIADT-YLGK   87 (691)
Q Consensus        14 ~~~~~~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~-----lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr-~lGR   87 (691)
                      +..++++|.++.+.+..++..++++++..+++.|+++.     +|++..+++++.+.+.++..++.+++|+++|| + ||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~   84 (491)
T 4aps_A            6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GA   84 (491)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CH
T ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc
Confidence            34567889999999999999999999999999999988     99999999999999999999999999999999 8 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHH
Q psy195           88 FLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSI  167 (691)
Q Consensus        88 kk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~  167 (691)
                      |+++.++.++..++.++++.+..  .     +.++++|++.|+|.|...++..++++|++|  .+.+.|+.++++++.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~  155 (491)
T 4aps_A           85 RPAVFWGGVLIMLGHIVLALPFG--A-----SALFGSIILIIIGTGFLKPNVSTLVGTLYD--EHDRRRDAGFSIFVFGI  155 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCS--T-----THHHHHHHHHHHHHHHHHHHHHHHHHHHSS--SCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhh--H-----HHHHHHHHHHHHHHHhccchHHHHHHHHcC--cccccceeeehHHHHHH
Confidence            99999999999999888776532  2     778899999999999999999999999997  12234888999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcccccccC---CCCC-cchhHHHHHHH-----
Q psy195          168 NAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKPMYKINK---PKGN-VALEVFQCTIR-----  238 (691)
Q Consensus       168 nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~~~~~~~---~~~~-~~~~i~~vi~~-----  238 (691)
                      ++|..++|.+++++.+       ..+|+..|++.++..++++++++...+++..++   ++.. ...+..+....     
T Consensus       156 ~~g~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  228 (491)
T 4aps_A          156 NLGAFIAPLIVGAAQE-------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV  228 (491)
T ss_dssp             HHHHHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence            9999999999999877       468999999987776666665554443332211   1111 11111110000     


Q ss_pred             -------HHhhhcccccccccccc--hhhh------cccccCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Q psy195          239 -------AIKNKFKTKKSERTKEH--WLDY------ANDKYDQG--TIEDIKTLLRILLLFVPLPIFWALFDQQGSRWTF  301 (691)
Q Consensus       239 -------~i~~~~~~~~~~~~~~~--~l~~------~~~~~~~~--~v~~~k~~l~~l~l~~~~~~~~~~~~q~~s~~~~  301 (691)
                             ...........++....  ....      ....+.+.  ...+.++......++....+++..+.+..+.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (491)
T 4aps_A          229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT  308 (491)
T ss_dssp             HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred             HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence                   00000000000000000  0000      00001111  1123444444556666677778888888887777


Q ss_pred             HHHH-hcCcccCCceeecchhHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy195          302 QANR-MDGRVFGTSLEIKPDQMQLINPLLILTFIPLFQYVIYPLVDKCGLNRPLRKLTVGGLLAALSFVVSALVEFNIRA  380 (691)
Q Consensus       302 ~~~~-~~~~l~~G~~~i~~~~l~~in~i~iii~~pl~~~~l~p~l~R~~~~s~l~~i~iG~ll~~~s~li~a~v~~~~~~  380 (691)
                      +... .+.+.      ...+.+...+.+..++..++.++ +.|.++||+. ...+++..|.++.++++++++....... 
T Consensus       309 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-l~~r~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  379 (491)
T 4aps_A          309 FAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFAW-LWTAWKKNQP-SSPTKFAVGLMFAGLSFLLMAIPGALYG-  379 (491)
T ss_dssp             HHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHHH-HHHHTTTC----CHHHHHHHHHHHHHHHTTTHHHHHHCC-
T ss_pred             HHHHHhccCc------cCHHHHhccchHHHHHHHHHHHH-HHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            6654 22221      34677788888888888888885 5666665533 5567778899888888877766552110 


Q ss_pred             cccCCCCCCceeEEEEecCCCceeEecCCCcccccccccccccccccccccccccccCCCCCCCcccccccceeeeeccC
Q psy195          381 HSQIAPQDRHFSLRIYNSMDCDFVFHSPLKNERVLRAMDMLALNNIPINGTQHFAALFEPSTSCPYVLNKTFQSSVLGAD  460 (691)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (691)
                                                                             .                        
T Consensus       380 -------------------------------------------------------~------------------------  380 (491)
T 4aps_A          380 -------------------------------------------------------T------------------------  380 (491)
T ss_dssp             -------------------------------------------------------C------------------------
T ss_pred             -------------------------------------------------------C------------------------
Confidence                                                                   0                        


Q ss_pred             CcceeeeeecchhhhhhcccCcceeeeeccCchhhhhhhhccccccccceeeecCCccccCCCCCCcccceeecCcccce
Q psy195          461 GKITEYYLIRDEKQQAHLKRLGEFHDLRNINSSLKMQILYGSELQGKRITLESDDGFYQDIDLPTGACYTEYIEGIPAGV  540 (691)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (691)
                                                                                                      
T Consensus       381 --------------------------------------------------------------------------------  380 (491)
T 4aps_A          381 --------------------------------------------------------------------------------  380 (491)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecccchhhhccccccCCceeEEeeccCCCCccccccccccCCCCceeeehhhHHHHHHHHHhHhhcchheeeecccCc
Q psy195          541 YEVRSENKVLKSNMELQDDNVYVLNLNTEASPEHRTARLLKDDSSNKVSMLWLFPQYIIITAAEIMFSITGFEFAFTQAP  620 (691)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~w~~pq~~~~~~~ei~~~~~~~ef~~~~aP  620 (691)
                                                                  +.+.+..|+++.+++.++++.+..+....+..+.+|
T Consensus       381 --------------------------------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p  416 (491)
T 4aps_A          381 --------------------------------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP  416 (491)
T ss_dssp             --------------------------------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred             --------------------------------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence                                                        001247889999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhccceecCCC
Q psy195          621 VSMKSAVSACWLLTTAFGNLIVAIVAEAKIFENQAYEFLLFASLMVVDMGVFALLAMRYKYVEED  685 (691)
Q Consensus       621 ~~mr~~~~a~~~~~~~~g~~i~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  685 (691)
                      ++.|+.++|++.+...+|+.++..+.+...+......|++++++.++..++++++.++.+.+.++
T Consensus       417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (491)
T 4aps_A          417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQG  481 (491)
T ss_dssp             TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888776655556678888888888888888888777765433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.91  E-value=3.1e-24  Score=239.18  Aligned_cols=144  Identities=10%  Similarity=0.065  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCchhHHHHHH
Q psy195           56 EKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL-----------NIPKRTFTLVG  124 (691)
Q Consensus        56 ~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~-----------~~~~~~~l~i~  124 (691)
                      ..+.|++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++.+++.....           ...+...++++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            45678899999999999999999999998 9999999999999999988875321000           00011789999


Q ss_pred             HHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCCCchhHHHHHHHH
Q psy195          125 LLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQC-FGQEACFPLAFGVPAL  203 (691)
Q Consensus       125 ~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~-~g~~~~w~~~F~i~~~  203 (691)
                      |++.|+|.|+..+..+++++|..|    +++|++..++.+.+..+|.++++.++..+...... ......|+..+.+..+
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p----~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAP----AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI  208 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSC----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCC----HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence            999999999999999999999777    99999999999999999999998887765432110 0012346666655443


Q ss_pred             H
Q psy195          204 L  204 (691)
Q Consensus       204 l  204 (691)
                      .
T Consensus       209 ~  209 (491)
T 4gc0_A          209 P  209 (491)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.87  E-value=2.1e-20  Score=205.13  Aligned_cols=170  Identities=11%  Similarity=-0.003  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHH
Q psy195           24 FFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNV  103 (691)
Q Consensus        24 ~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~i  103 (691)
                      +.+.+..+...+..+...+.++.+ .+++ .+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~  107 (451)
T 1pw4_A           31 LGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVML  107 (451)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHH
Confidence            333344444444444444445544 4567 9999999999999999999999999999998 999999999999999998


Q ss_pred             HHHH----hhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          104 LLTV----TAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       104 ll~~----s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      +.++    +..  .     +.++++|++.|++.|...+...++++|.+|    +++|++++++.+.+.++|.+++|.+++
T Consensus       108 ~~~~~~~~~~~--~-----~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          108 FMGFVPWATSS--I-----AVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHCHHHHSS--S-----SHHHHHHHHHHHHHHHTHHHHHHHHHTTCT----TTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHhhhhcccc--H-----HHHHHHHHHHHHHhhhccchHHHHHHHHCC----chhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877    422  2     678899999999999999999999999887    889999999999999999999999999


Q ss_pred             HhhccccccCCCCc-hhHHHHHHHHHHHHHHHHHHh
Q psy195          180 IFRHDMQCFGQEAC-FPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       180 ~l~~~~~~~g~~~~-w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      ++.+       ..+ |+..|++.+++.++..++.+.
T Consensus       177 ~l~~-------~~g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          177 LGMA-------WFNDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             HHHH-------HTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------HhccHHHHHHHHHHHHHHHHHHHHh
Confidence            8765       456 999999887766555444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.87  E-value=1.5e-19  Score=197.83  Aligned_cols=153  Identities=17%  Similarity=0.126  Sum_probs=127.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           19 YPKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        19 ~~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      +++.+..+.+..++..+......+.+| ++.+++|++..+.|++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence            344555555555555555554444444 46778999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhh-cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTA-IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus        99 ~ig~ill~~s~-~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      .++.++..... .+++     +.++++|++.|+|.|...+...++++|.+|    +++|++.+++.+.+.++|.+++|.+
T Consensus       102 ~~~~~~~~~~~~~~~~-----~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~g~~~g~~~  172 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNY-----TLFLVGLFIIAAGLGCLETAANPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVF  172 (438)
T ss_dssp             HHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccH-----HHHHHHHHHHHhhHHHhhhhHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988873321 2222     788999999999999999999999999887    8899999999999999999999999


Q ss_pred             HHHhh
Q psy195          178 TPIFR  182 (691)
Q Consensus       178 ~~~l~  182 (691)
                      ++.+.
T Consensus       173 ~~~l~  177 (438)
T 3o7q_A          173 GQSLI  177 (438)
T ss_dssp             TTHHH
T ss_pred             HHHHH
Confidence            99887

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.76  E-value=5.1e-18  Score=182.22  Aligned_cols=165  Identities=15%  Similarity=0.099  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHH
Q psy195           25 FIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVL  104 (691)
Q Consensus        25 ~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~il  104 (691)
                      .+.+..++..++.....+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            34444555555555555666654 567999999999999999999999999999999998 9999999999999998888


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy195          105 LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHD  184 (691)
Q Consensus       105 l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~  184 (691)
                      ...+...       +.++++|++.|++.+...+...+++.|.+|    +++|++.+++.+.+.++|..++|.+++++.+ 
T Consensus        82 ~~~~~~~-------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-  149 (375)
T 2gfp_A           82 AVTTSSL-------TVLIAASAMQGMGTGVGGVMARTLPRDLYE----RTQLRHANSLLNMGILVSPLLAPLIGGLLDT-  149 (375)
T ss_dssp             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred             HHHhccH-------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Confidence            7775322       788899999999999999999999999776    7889999999999999999999999998876 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHH
Q psy195          185 MQCFGQEACFPLAFGVPALLMFLAI  209 (691)
Q Consensus       185 ~~~~g~~~~w~~~F~i~~~l~~l~~  209 (691)
                            ..+|+..|.+.++..++..
T Consensus       150 ------~~~~~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A          150 ------MWNWRACYLFLLVLCAGVT  168 (375)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHH
T ss_pred             ------hccHHHHHHHHHHHHHHHH
Confidence                  4579999887666554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.68  E-value=3.7e-17  Score=179.33  Aligned_cols=168  Identities=11%  Similarity=0.016  Sum_probs=112.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .|.++.+....++...++....++++.|+++++|++..++|++.+.+.++..++++++|+++||+ ||||++.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            35566666666666666667778999999988999999999999999999999999999999998 99999998877665


Q ss_pred             HHHHHH---HHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLL---TVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTF  176 (691)
Q Consensus       100 ig~ill---~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~  176 (691)
                      ++...+   .......      ..+..++++.+++.|...+...+...+..+  ..+++++..++..+...++|..++|.
T Consensus        85 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~g~~~~~~  156 (417)
T 2cfq_A           85 VMFAPFFIFIFGPLLQ------YNILVGSIVGGIYLGFCFNAGAPAVEAFIE--KVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             SCHHHHHHHTHHHHHH------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHH--HHHHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HhhhhcccchHHHHHHHHHHHHHHHH
Confidence            432211   1111000      001233333333333332222333333221  11245666777777778999999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHH
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALL  204 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l  204 (691)
                      +++++.+        .+|+..|++.++.
T Consensus       157 l~~~l~~--------~~~~~~f~~~~~~  176 (417)
T 2cfq_A          157 IVGIMFT--------INNQFVFWLGSGC  176 (417)
T ss_dssp             HHHHHHH--------HCSHHHHTTTTTT
T ss_pred             HHHHHHH--------hchhHHHHHHHHH
Confidence            9998865        3588888765544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=3.3e-11  Score=131.61  Aligned_cols=177  Identities=13%  Similarity=0.096  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcC--chhHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYL--GKFLTIVILSIVY   98 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~l--GRkk~i~ig~il~   98 (691)
                      +.++.+.+..++...+++++..+++.|+++.+|++..+++.+.+...++..++.+++|+++|| +  |||+.+.++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            567777777777788888888999999988899999999999999999999999999999999 6  8998888777665


Q ss_pred             H-HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHH
Q psy195           99 L-GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTF  176 (691)
Q Consensus        99 ~-ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~  176 (691)
                      . ++.+++......+     .+.+.+..++.|++.+...+...++..|.+|    +++|++++++.+...++ |..++|.
T Consensus       331 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          331 VTIATIVYWMNPAGN-----PTVDMICMIVIGFLIYGPVMLIGLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHHTTSCCTTC-----HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccC-----HHHHHHHHHHHHHHHhchHHHHHHHHHHHhc----hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            5 4444443321101     1566777788899888888888899999887    88899999999999999 9999999


Q ss_pred             HHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          177 ITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       177 i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      +.+++.+       ..+|+..|.+.+++.+++.++.+.
T Consensus       402 ~~g~l~~-------~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          402 IVGYTVD-------FFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHH-------SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------hcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999887       467888888877776666555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.26  E-value=2.7e-10  Score=124.07  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLY-MHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~y-l~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      +.++...+..++....++++..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            456666666666677777888899999 8888899999999999999999999999999999997 99999999988887


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++.+++.....        ....+..++.|++.+...+...++..|.+|    ++ ++.+.++.. ...+|+.++|.+.+
T Consensus       337 ~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          337 ALCLISAFAGG--------HVGLIALTLCSAFMSIQYPTIFSLGIKNLG----QD-TKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             HHHHHHHHCCH--------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCG----GG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence            77776665422        233445578889999999999999899886    33 666666655 56689999999999


Q ss_pred             HhhccccccCCCCc-hhHHHHHHHHHHHHH
Q psy195          180 IFRHDMQCFGQEAC-FPLAFGVPALLMFLA  208 (691)
Q Consensus       180 ~l~~~~~~~g~~~~-w~~~F~i~~~l~~l~  208 (691)
                      ++.+       ..+ ++..|.+.++..++.
T Consensus       403 ~l~~-------~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          403 FVSD-------AAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHH-------HHTSSGGGGHHHHHHHHHH
T ss_pred             HHHH-------HhcchHHHHHHHHHHHHHH
Confidence            9877       345 787887765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.16  E-value=4.6e-10  Score=122.69  Aligned_cols=173  Identities=9%  Similarity=0.039  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHH
Q psy195           22 AVFFIVINEFCERFCYYGMRTVLSLYMHLVLLY---DEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVY   98 (691)
Q Consensus        22 ~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~---s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~   98 (691)
                      .++...+..+.....++.....++.|+.+.++.   +....+...++..++..++.+++|+++||+ |||+++.++.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            344444333333344445556688888766553   234456677777778888999999999998 9999998888777


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHH-HHHHHHHHHHHHHHH
Q psy195           99 LGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSL-FYFSINAGSLISTFI  177 (691)
Q Consensus        99 ~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~-~~~~~nlG~~igp~i  177 (691)
                      .++.+++.....  .     ..+++..++.+++.+...+....+.+|.+|    ++.|++..++ ++....+|++++|.+
T Consensus       300 ~~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~lg~~~gp~l  368 (417)
T 2cfq_A          300 SVRIIGSSFATS--A-----LEVVILKTLHMFEVPFLLVGCFKYITSQFE----VRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHHHTTCCS--H-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred             HHHHHHHHHhcc--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence            666555443211  1     455666667777777777777889999887    8899999888 467778999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFI  213 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~  213 (691)
                      ++++.+       ..++...|.+.+++.+++.++.+
T Consensus       369 ~G~l~~-------~~g~~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          369 AGNMYE-------SIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHTHHH-------HSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHH-------hcCcHHHHHHHHHHHHHHHHHHH
Confidence            998876       35678888877776666655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.93  E-value=2.2e-09  Score=119.02  Aligned_cols=182  Identities=11%  Similarity=0.003  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHH-----HHHHH
Q psy195           23 VFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIV-----ILSIV   97 (691)
Q Consensus        23 ~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~-----ig~il   97 (691)
                      .+.+++..++....+......++.|+.+.++.+...++.+.....++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            33444444444555556667788999888888877778888888899999999999999997 9986554     66666


Q ss_pred             HHHHHHHHHHhhcC-CCCCc-hhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy195           98 YLGGNVLLTVTAID-PLNIP-KRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLIST  175 (691)
Q Consensus        98 ~~ig~ill~~s~~~-~~~~~-~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp  175 (691)
                      ..++.+++...... ..... ....+.++.++.|++.+...+...++..|.+|    ++.|+.+.++.+...++|.++++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~i~~  439 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP----KAFNSQMMSMWFLSSSVGSALNA  439 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT----TTCSSSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666555443200 00000 11667778888999999999999999999887    88899999999999999999999


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          176 FITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       176 ~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      .+.+++.+        .++...|.+.+++.+++.++.+...+
T Consensus       440 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          440 QLVTLYNA--------KSEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             HHGGGGGG--------SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhc--------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888765        24555666666665555555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.76  E-value=4.1e-07  Score=100.50  Aligned_cols=174  Identities=11%  Similarity=0.050  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy195           34 RFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPL  113 (691)
Q Consensus        34 ~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~  113 (691)
                      ..+++.+. ....++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+.+........
T Consensus       290 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~  367 (491)
T 4gc0_A          290 FVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA  367 (491)
T ss_dssp             HTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc
Confidence            33344443 344455567888888888888888899999999999999998 9999999998887777766654421110


Q ss_pred             CCchhHHHHHHHHHHHHHhh-chhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q psy195          114 NIPKRTFTLVGLLLIAVGTG-GIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRHDMQCFGQEA  192 (691)
Q Consensus       114 ~~~~~~~l~i~~~l~gig~G-~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~~~~~~g~~~  192 (691)
                        .. ....+..++...+.+ ...+....+.+|.||    .+.|+.+.++......+|+++++.+.+.+.+...... ..
T Consensus       368 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP----t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~  439 (491)
T 4gc0_A          368 --PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFP----NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HF  439 (491)
T ss_dssp             --CH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC----TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HH
T ss_pred             --ch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence              01 222222222222222 234666789999998    8899999999999999999999888776643100000 12


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhcc
Q psy195          193 CFPLAFGVPALLMFLAIIVFIIGKP  217 (691)
Q Consensus       193 ~w~~~F~i~~~l~~l~~l~~~~~~~  217 (691)
                      ++...|++.+++.+++.++.++..|
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~P  464 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVP  464 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheec
Confidence            3445666666666666655544443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.55  E-value=2.9e-08  Score=105.84  Aligned_cols=161  Identities=15%  Similarity=0.089  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHH-HH
Q psy195           21 KAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIV-YL   99 (691)
Q Consensus        21 r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il-~~   99 (691)
                      |.++...+..++...++++...+++.|+++.+|++..+++.+.+...++..++.++.|+++||+ ||+  +.++..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566666666777777778888889999888999999999999999999999999999999997 873  2333332 22


Q ss_pred             HHHHH--HHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVL--LTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFI  177 (691)
Q Consensus       100 ig~il--l~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i  177 (691)
                      ++..+  ......++.     +.+++..++.|++.+...+...++..|.+    | ++|++..+..+...++|..++|.+
T Consensus       276 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----p-~~~g~~~g~~~~~~~~g~~~~~~~  345 (375)
T 2gfp_A          276 AGLLMWIPDWFGVMNV-----WTLLVPAALFFFGAGMLFPLATSGAMEPF----P-FLAGTAGALVGGLQNIGSGVLASL  345 (375)
T ss_dssp             TSSSSSHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSTTHHHHHTHH----H-HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             HHHHHHHHhhhccccH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHhC----C-cccchHHHHHHHHHHHHHHHHHHH
Confidence            22221  111000000     55667778889999999999999999955    3 689999999999999999999999


Q ss_pred             HHHhhccccccCCCCchhHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVP  201 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~  201 (691)
                      .+.+.+       ..+|...+.+.
T Consensus       346 ~g~l~~-------~~~~~~~~~~~  362 (375)
T 2gfp_A          346 SAMLPQ-------TGQGSLGLLMT  362 (375)
T ss_dssp             CTHHHH-------HHHHHHHHHHH
T ss_pred             HHHHhc-------CCcccHHHHHH
Confidence            888765       34566666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.72  E-value=1.1e-05  Score=89.84  Aligned_cols=120  Identities=11%  Similarity=0.077  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHh----HhcCch----hHHHHHHHHHHHHHHHHHHHhhcC-CC-CCchhHHHHHHHHHH
Q psy195           59 ATVMFHIWTGLCYFFPLFGGIIA----DTYLGK----FLTIVILSIVYLGGNVLLTVTAID-PL-NIPKRTFTLVGLLLI  128 (691)
Q Consensus        59 ag~i~~~~~i~~~i~~l~~G~La----Dr~lGR----kk~i~ig~il~~ig~ill~~s~~~-~~-~~~~~~~l~i~~~l~  128 (691)
                      .+.+.....++..++.++.|++.    ||. ||    ++.+.++.++..++.+++...... .. ...+.+.+.++.++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            44444444445555555555543    443 43    345666766666666555432100 00 000116677788899


Q ss_pred             HHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy195          129 AVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITPIFRH  183 (691)
Q Consensus       129 gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~~l~~  183 (691)
                      |++.+...+...++..|..|    ++.|+++.++.+...++|..++|.+.+.+.+
T Consensus       416 g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAP----KAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCC----TTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999887    8889999999999999999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.81
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.14
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.02

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.1e-21  Score=206.06  Aligned_cols=182  Identities=13%  Similarity=0.040  Sum_probs=141.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHH
Q psy195           18 KYPKAVFFIVINEFCERFCYYG---MRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVIL   94 (691)
Q Consensus        18 ~~~r~~~~l~~~~~~~~~~~y~---i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig   94 (691)
                      .++|--|.++...++..+.+|.   ..+.+..++. ++|+|.++.|++.+++.++..++.+++|+++||+ |||+++.++
T Consensus        18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   95 (447)
T d1pw4a_          18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHH
Confidence            3344445444444444444432   2334445665 5899999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHH
Q psy195           95 SIVYLGGNVLLTVTA--IDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSL  172 (691)
Q Consensus        95 ~il~~ig~ill~~s~--~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~  172 (691)
                      .++..++.++.+...  ..++     ..++++|++.|++.|...+...++++|.+|    +++|++++++.+.+.++|.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----~~~r~~~~~~~~~~~~~g~~  166 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSI-----AVMFVLLFLCGWFQGMGWPPCGRTMVHWWS----QKERGGIVSVWNCAHNVGGG  166 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSS-----SHHHHHHHHHHHHHHHTHHHHHHHHHTTCT----TTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccchhhhhH-----HHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----hhcccccccccccccchhhh
Confidence            999988888776642  1122     678999999999999999999999999887    88999999999999999999


Q ss_pred             HHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHHHHhhc
Q psy195          173 ISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFIIGK  216 (691)
Q Consensus       173 igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~~~  216 (691)
                      +++.+++.+...      ..+|+..|.+.+++.++..++.+...
T Consensus       167 i~~~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         167 IPPLLFLLGMAW------FNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             SHHHHHHHHHHH------TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhHhhh------hhcccccchhhhhhHHHHHHHHHHhc
Confidence            999988876552      35789888887766655554444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=5.4e-19  Score=185.41  Aligned_cols=181  Identities=12%  Similarity=0.062  Sum_probs=120.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .|.+|.+.+..++..+++....++++.|+++++|+|.++.|++.+++.++..+++++.|+++||+ ||||+++++.++..
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            46788888888888888877888999999999999999999999999999999999999999998 99999999988887


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy195          100 GGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINAGSLISTFITP  179 (691)
Q Consensus       100 ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nlG~~igp~i~~  179 (691)
                      ++..+.........   .....++.+.+.+.+.+...........+..  ....+++....+........|..+++.+++
T Consensus        85 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          85 VMFAPFFIFIFGPL---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFI--EKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HTHHHHHHHTHHHH---HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHH--HHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhh---HHHHHHHHHHHhhhcccccccchhhcccccc--cchhhhhHHHHHHHhhhhcccccccccccc
Confidence            77766655421000   0011223333333333333333222222211  112334555666677778888889999888


Q ss_pred             HhhccccccCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy195          180 IFRHDMQCFGQEACFPLAFGVPALLMFLAIIVFII  214 (691)
Q Consensus       180 ~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~~~  214 (691)
                      .+.+        .+|+..+........+..++...
T Consensus       160 ~l~~--------~~~~~~~~~~~~~~~~~~~~~~~  186 (417)
T d1pv7a_         160 IMFT--------INNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HHHH--------HCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccc--------ccccccccchhhHHHHHHHHHHH
Confidence            8765        23555555544444444433333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.1e-09  Score=115.99  Aligned_cols=178  Identities=12%  Similarity=0.012  Sum_probs=131.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHH
Q psy195           20 PKAVFFIVINEFCERFCYYGMRTVLSLYMHLVLLYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYL   99 (691)
Q Consensus        20 ~r~~~~l~~~~~~~~~~~y~i~~~l~~yl~~~lg~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~   99 (691)
                      .+.++.+....++.....++...+++.|+.+..+++..+++.......++..++.+++|+++||+ +|++......+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35566666667777777888888999999999999999999999999999999999999999997 88765444433332


Q ss_pred             HHHHHHHHh-hcCCCCCchhHHHHHHHHHHHHHhhchhhhhhhhhhccCCCcchhhhHHHHHHHHHHHHHH-HHHHHHHH
Q psy195          100 GGNVLLTVT-AIDPLNIPKRTFTLVGLLLIAVGTGGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFYFSINA-GSLISTFI  177 (691)
Q Consensus       100 ig~ill~~s-~~~~~~~~~~~~l~i~~~l~gig~G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~~~~nl-G~~igp~i  177 (691)
                      +..+..... ..+.   .......+..++.|++.++..+....+..|.+|    ++.|+++.++.+...++ |.+++|.+
T Consensus       327 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p----~~~~g~~~g~~~~~~~~~g~~~~~~~  399 (447)
T d1pw4a_         327 LVTIATIVYWMNPA---GNPTVDMICMIVIGFLIYGPVMLIGLHALELAP----KKAAGTAAGFTGLFGYLGGSVAASAI  399 (447)
T ss_dssp             HHHHHHHHTTSCCT---TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC----TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221 1110   011556677778888888888888999999887    88899999998888777 55678999


Q ss_pred             HHHhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy195          178 TPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIVF  212 (691)
Q Consensus       178 ~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~~  212 (691)
                      .+++.+       ..||+..|.+..+..++++++.
T Consensus       400 ~g~~~~-------~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         400 VGYTVD-------FFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHH-------SSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------HhChHHHHHHHHHHHHHHHHHH
Confidence            998877       5678888877666555554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=5.9e-10  Score=115.30  Aligned_cols=144  Identities=8%  Similarity=0.001  Sum_probs=116.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHhHhcCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHh
Q psy195           53 LYDEKTATVMFHIWTGLCYFFPLFGGIIADTYLGKFLTIVILSIVYLGGNVLLTVTAIDPLNIPKRTFTLVGLLLIAVGT  132 (691)
Q Consensus        53 g~s~~~ag~i~~~~~i~~~i~~l~~G~LaDr~lGRkk~i~ig~il~~ig~ill~~s~~~~~~~~~~~~l~i~~~l~gig~  132 (691)
                      +.+....+.......++..++.++.|++.||+ ||++++.++.++..++.+++......       +.+++..++.|++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATSA-------LEVVILKTLHMFEV  326 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCCCH-------HHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccccc-------chhhHHHHHHHHHH
Confidence            44556667777888889999999999999998 99999999988888877776654322       67778888899999


Q ss_pred             hchhhhhhhhhhccCCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHHH
Q psy195          133 GGIKPCVSSFGGDQFIVPEQSAQLEKFFSLFY-FSINAGSLISTFITPIFRHDMQCFGQEACFPLAFGVPALLMFLAIIV  211 (691)
Q Consensus       133 G~~~~~~~~~~ad~fp~~~~~~~rg~~~~~~~-~~~nlG~~igp~i~~~l~~~~~~~g~~~~w~~~F~i~~~l~~l~~l~  211 (691)
                      +...+...+++.|.+|    ++.|++..+..+ ....+|.+++|.+.+++.+       ..||+..|.+.+++.++..++
T Consensus       327 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g~~~~~~~~~~~~~~~~~~  395 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFE----VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHSC----GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887    889999999754 5567899999999999987       467888888877766665554


Q ss_pred             HHhh
Q psy195          212 FIIG  215 (691)
Q Consensus       212 ~~~~  215 (691)
                      ..+.
T Consensus       396 ~~~~  399 (417)
T d1pv7a_         396 SVFT  399 (417)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443