Psyllid ID: psy2035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWTQAQRNKKDTCQTEESSQQGNETTESGSIRS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEcccEEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEcccccEEEEEEEEEEEHccccccccccccccccHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdncpkvanpnqldndrdgkgdecdpdldgdgisndedncrliynpnqddsdahynADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSteltsgfmagfshsywtqaqrnkkdtcqteessqqgnettesgsirs
Flexible Loop (DISEMBL)
mdncpkvanpnqldndrdgkgDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWTQAQRNKKDTCQteessqqgnettesgsirs
Low Complexity Region (SEG)
MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWTQAQRNKKDTCQTEESSQQGNETTESGSIRS
Disordered region (IsUnstruct)
***************************************CRLIYN******DAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWT******************************
Disordered Region (DISOPRED)
MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWT******************************
Disordered Region (DISEMBL)
MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYW*******************************
Disordered Region (DISPRO)
*DNCPKVANPNQLDN*RDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWTQAQR**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVLTILSSTELTSGFMAGFSHSYWTQAQRNKKDTCQTEESSQQGNETTESGSIRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9R0G6	755	Cartilage oligomeric matr	yes	N/A	0.354	0.066	0.596	6e-11
P49747	757	Cartilage oligomeric matr	yes	N/A	0.347	0.064	0.588	2e-10
Q1L8P7	929	Thrombospondin-3b OS=Dani	yes	N/A	0.191	0.029	0.615	3e-10
P35448	1173	Thrombospondin-1 OS=Xenop	N/A	N/A	0.347	0.041	0.568	3e-10
Q8JGW0	949	Thrombospondin-4-B OS=Dan	no	N/A	0.390	0.057	0.578	6e-10
P35440	1178	Thrombospondin-2 OS=Gallu	yes	N/A	0.354	0.042	0.538	6e-10
P35442	1172	Thrombospondin-2 OS=Homo	no	N/A	0.354	0.042	0.519	8e-10
P35444	755	Cartilage oligomeric matr	yes	N/A	0.347	0.064	0.588	9e-10
Q95116	1170	Thrombospondin-2 OS=Bos t	yes	N/A	0.354	0.042	0.519	9e-10
P35441	1170	Thrombospondin-1 OS=Mus m	no	N/A	0.347	0.041	0.549	9e-10

>sp|Q9R0G6|COMP_MOUSE Cartilage oligomeric matrix protein OS=Mus musculus GN=Comp PE=1 SV=2

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNC  V N  Q D DRDG GD CDPD DGDG+ N++DNC L+ NP+Q +SD+
Sbjct: 288 DNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEQDNCPLVRNPDQRNSDS 339

May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7.
Mus musculus (taxid: 10090)

>sp|P49747|COMP_HUMAN Cartilage oligomeric matrix protein OS=Homo sapiens GN=COMP PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNC  V N  Q D DRDG GD CDPD DGDG+ N++DNC L+ NP+Q ++D
Sbjct: 290 DNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTD 340

May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7.

Homo sapiens (taxid: 9606)

>sp|Q1L8P7|TSP3B_DANRE Thrombospondin-3b OS=Danio rerio GN=thbs3b PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 35/52 (67%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V N +QLD D +GKGD CD D+DGDGI N  DNC  I NP Q D D 
Sbjct: 514 DNCPNVPNGDQLDTDGNGKGDICDTDIDGDGIPNVLDNCPKIPNPMQTDRDG 565

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin and type V collagen.

Danio rerio (taxid: 7955)

>sp|P35448|TSP1_XENLA Thrombospondin-1 OS=Xenopus laevis GN=thbs1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP   NP+Q D DR+G+GD C  D+DGDGI N+ DNC  +YN +Q D+D
Sbjct: 778 DNCPYNHNPDQADTDRNGEGDACSVDIDGDGILNERDNCAYVYNVDQKDTD 828

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin, type V collagen and integrins alpha-V/beta-1, alpha-V/beta-3 and alpha-IIb/beta-3.

Xenopus laevis (taxid: 8355)

>sp|Q8JGW0|TSP4B_DANRE Thrombospondin-4-B OS=Danio rerio GN=thbs4b PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 37/57 (64%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
           DNC  V N  Q D D DGKGD CDPD DGDGI N++DNC L  N NQ +SD   + D
Sbjct: 474 DNCVTVPNSGQEDADGDGKGDACDPDADGDGILNEQDNCWLTPNINQQNSDKDSHGD 530

May act as an extracellular mitogen and may stimulate early erythroid progenitors proliferation. Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Can bind to fibrinogen, fibronectin, laminin and type V collagen.

Danio rerio (taxid: 7955)

>sp|P35440|TSP2_CHICK Thrombospondin-2 OS=Gallus gallus GN=THBS2 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V NP Q+D D +G+GD C  D+DGD I N+ DNC  +YN +Q D+D 
Sbjct: 783 DNCPYVHNPAQIDTDNNGEGDSCAVDIDGDDIFNERDNCPYVYNTDQSDTDG 834

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions.

Gallus gallus (taxid: 9031)

>sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V NP Q+D D +G+GD C  D+DGD + N+ DNC  +YN +Q D+D 
Sbjct: 777 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDG 828

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Ligand for CD36 mediating antiangiogenic properties.

Homo sapiens (taxid: 9606)

>sp|P35444|COMP_RAT Cartilage oligomeric matrix protein OS=Rattus norvegicus GN=Comp PE=1 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNC  V N  Q D DRD  GD CDPD DGDG+ N++DNC L+ NP+Q +SD
Sbjct: 288 DNCVTVPNSGQEDVDRDRIGDACDPDADGDGVPNEQDNCPLVRNPDQRNSD 338

May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP) (By similarity). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7.

Rattus norvegicus (taxid: 10116)

>sp|Q95116|TSP2_BOVIN Thrombospondin-2 OS=Bos taurus GN=THBS2 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V NP Q+D D +G+GD C  D+DGD + N+ DNC  +YN +Q D+D 
Sbjct: 775 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDG 826

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Ligand for CD36 mediating antiangiogenic properties.

Bos taurus (taxid: 9913)

>sp|P35441|TSP1_MOUSE Thrombospondin-1 OS=Mus musculus GN=Thbs1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP   NP+Q D D++G+GD C  D+DGDGI N+ DNC+ +YN +Q D+D
Sbjct: 775 DNCPYNHNPDQADTDKNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTD 825

Adhesive glycoprotein that mediates cell-to-cell and cell-to-matrix interactions. Binds heparin. May play a role in dentinogenesis and/or maintenance of dentin and dental pulp. Ligand for CD36 mediating antiangiogenic properties.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
328706983	1061	PREDICTED: thrombospondin-3-like [Acyrth	0.418	0.055	0.677	2e-15
170062687	796	thrombospondin-4 [Culex quinquefasciatus	0.354	0.062	0.68	3e-11
242015135	1018	Thrombospondin-3 precursor, putative [Pe	0.624	0.086	0.447	4e-11
157117627	1064	thrombospondin [Aedes aegypti] gi|108875	0.617	0.081	0.452	5e-11
429753685	818	thrombospondin type 3 repeat-containing	0.375	0.064	0.622	6e-11
213961657	863	proprotein convertase, P [Capnocytophaga	0.375	0.061	0.603	8e-11
347967276	1066	AGAP002157-PA [Anopheles gambiae str. PE	0.617	0.081	0.442	9e-11
357616511	1129	hypothetical protein KGM_00807 [Danaus p	0.397	0.049	0.568	2e-10
170050552	817	thrombospondin [Culex quinquefasciatus]	0.617	0.106	0.442	2e-10
332881102	1021	thrombospondin type 3 repeat-containing	0.354	0.048	0.588	2e-10

>gi|328706983|ref|XP_001948462.2| PREDICTED: thrombospondin-3-like [Acyrthosiphon pisum]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
           +DNCPKVAN NQLD D DGKGDECDPD+DGDGI N +DNC L+YNP+Q D D +   D+
Sbjct: 736 VDNCPKVANSNQLDTDGDGKGDECDPDIDGDGIGNTQDNCMLVYNPDQADFDGNGIGDI 794

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062687|ref|XP_001866776.1| thrombospondin-4 [Culex quinquefasciatus] gi|167880510|gb|EDS43893.1| thrombospondin-4 [Culex quinquefasciatus]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 37/50 (74%)

Query: 3   NCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           NCP+VANP QLD D DG GD CDPD D DG+ N  DNC LI+NPNQ D D
Sbjct: 472 NCPRVANPGQLDTDEDGVGDACDPDKDNDGVLNQVDNCELIWNPNQADRD 521

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015135|ref|XP_002428229.1| Thrombospondin-3 precursor, putative [Pediculus humanus corporis] gi|212512790|gb|EEB15491.1| Thrombospondin-3 precursor, putative [Pediculus humanus corporis]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 55/96 (57%), Gaps = 8/96 (8%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA------- 53
           +DNCP+V N +QLD D DG+GDECD D DGDG+ N  DNC   YNPNQ+D D        
Sbjct: 690 VDNCPRVPNSDQLDTDGDGRGDECDSDCDGDGVLNQRDNCPYAYNPNQEDLDGDGIGDIC 749

Query: 54  HYNADLILMRQVMAWAMYVTKISTKMELRTYQMCVL 89
             + DL  +   +      +KI +  + RTYQ  VL
Sbjct: 750 QDDFDLDKVPNYLDNCPNNSKIFS-TDFRTYQTVVL 784

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117627|ref|XP_001658858.1| thrombospondin [Aedes aegypti] gi|108875947|gb|EAT40172.1| AAEL008062-PA, partial [Aedes aegypti]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 8/95 (8%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD-------AH 54
           DNCPK+AN +QLD D DG+GD CDPD D DGI N EDNC ++YNP+Q D++         
Sbjct: 743 DNCPKLANSDQLDTDGDGRGDLCDPDADNDGILNAEDNCPIVYNPDQMDANNDGVGDICE 802

Query: 55  YNADLILMRQVMAWAMYVTKISTKMELRTYQMCVL 89
            + DL  +   +      +KI +  + RTYQ  VL
Sbjct: 803 EDFDLDKIPNYLDNCPNNSKIFS-TDFRTYQTVVL 836

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|429753685|ref|ZP_19286465.1| thrombospondin type 3 repeat-containing domain protein [Capnocytophaga sp. oral taxon 326 str. F0382] gi|429172020|gb|EKY13604.1| thrombospondin type 3 repeat-containing domain protein [Capnocytophaga sp. oral taxon 326 str. F0382]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 38/53 (71%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
            DNCP V+N  Q D D DG GD CD D+DGDGI N +DNC LIYNP+Q D D+
Sbjct: 652 FDNCPTVSNTTQQDLDNDGIGDACDNDIDGDGIPNTQDNCPLIYNPDQADLDS 704

Source: Capnocytophaga sp. oral taxon 326 str. F0382

Species: Capnocytophaga sp. oral taxon 326

Genus: Capnocytophaga

Family: Flavobacteriaceae

Order: Flavobacteriales

Class: Flavobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|213961657|ref|ZP_03389923.1| proprotein convertase, P [Capnocytophaga sputigena Capno] gi|213955446|gb|EEB66762.1| proprotein convertase, P [Capnocytophaga sputigena Capno]

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 38/53 (71%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
            DNCP  +N  Q D+D DG GD CD D+DGDGI N +DNC LIYNP+Q D D+
Sbjct: 697 FDNCPTASNTTQQDSDNDGIGDVCDNDIDGDGIPNAQDNCPLIYNPDQADLDS 749

Source: Capnocytophaga sputigena Capno

Species: Capnocytophaga sputigena

Genus: Capnocytophaga

Family: Flavobacteriaceae

Order: Flavobacteriales

Class: Flavobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|347967276|ref|XP_308033.5| AGAP002157-PA [Anopheles gambiae str. PEST] gi|333466370|gb|EAA03707.5| AGAP002157-PA [Anopheles gambiae str. PEST]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 8/95 (8%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD-------AH 54
           DNCPK+AN +QLD D DG+GD CD D D DGI N EDNC +++NP+Q D++         
Sbjct: 745 DNCPKLANSDQLDTDGDGRGDLCDTDADNDGILNHEDNCPIVFNPDQTDANNDGIGDICE 804

Query: 55  YNADLILMRQVMAWAMYVTKISTKMELRTYQMCVL 89
            + DL L+   +      +KI +  + RTYQ  VL
Sbjct: 805 EDFDLDLIPNYLDNCPNNSKIFS-TDFRTYQTVVL 838

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616511|gb|EHJ70238.1| hypothetical protein KGM_00807 [Danaus plexippus]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 39/58 (67%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
           DNCP+  NP Q D D DG G+ CDPD+D DGI ND DNC L++NP Q+D D     DL
Sbjct: 708 DNCPRRFNPGQEDADNDGLGNVCDPDMDNDGIPNDHDNCPLVFNPQQEDMDGDGVGDL 765

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050552|ref|XP_001861362.1| thrombospondin [Culex quinquefasciatus] gi|167872159|gb|EDS35542.1| thrombospondin [Culex quinquefasciatus]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 8/95 (8%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD-------AH 54
           DNCPK+AN +QLD D DG+GD CDPD D DGI N +DNC ++ NP+Q D++         
Sbjct: 496 DNCPKLANSDQLDTDGDGRGDLCDPDADNDGILNADDNCPIVPNPDQTDANNDGVGDICE 555

Query: 55  YNADLILMRQVMAWAMYVTKISTKMELRTYQMCVL 89
            + DL L+   +      +KI +  + RTYQ  VL
Sbjct: 556 EDFDLDLIPNYLDNCPNNSKIFS-TDFRTYQTVVL 589

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332881102|ref|ZP_08448770.1| thrombospondin type 3 repeat-containing domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681014|gb|EGJ53943.1| thrombospondin type 3 repeat-containing domain protein [Capnocytophaga sp. oral taxon 329 str. F0087]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP  +NP+Q D D DG GD CDPD+D DGI N++DNC  + NP+Q D D
Sbjct: 822 DNCPDYSNPDQADTDHDGIGDACDPDIDNDGIPNEKDNCPFVKNPSQKDLD 872

Source: Capnocytophaga sp. oral taxon 329 str. F0087

Species: Capnocytophaga sp. oral taxon 329

Genus: Capnocytophaga

Family: Flavobacteriaceae

Order: Flavobacteriales

Class: Flavobacteriia

Phylum: Bacteroidetes

Superkingdom: Bacteria

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
UNIPROTKB|E1C3P2	1176	THBS2 "Thrombospondin-2" [Gall	0.411	0.049	0.620	6.7e-16
UNIPROTKB|E1C5E2	1178	THBS2 "Thrombospondin-2" [Gall	0.411	0.049	0.620	6.7e-16
UNIPROTKB|P35440	1178	THBS2 "Thrombospondin-2" [Gall	0.411	0.049	0.620	6.7e-16
UNIPROTKB|F1NTB3	1179	THBS2 "Thrombospondin-2" [Gall	0.411	0.049	0.620	6.8e-16
UNIPROTKB|P35442	1172	THBS2 "Thrombospondin-2" [Homo	0.411	0.049	0.568	1.4e-15
MGI|MGI:98738	1172	Thbs2 "thrombospondin 2" [Mus	0.411	0.049	0.568	2.9e-15
RGD|1310979	1172	Thbs2 "thrombospondin 2" [Ratt	0.411	0.049	0.568	2.9e-15
UNIPROTKB|Q95116	1170	THBS2 "Thrombospondin-2" [Bos	0.404	0.048	0.596	1e-14
UNIPROTKB|F1P0J8	1129	LOC100858245 "Uncharacterized	0.411	0.051	0.603	1.6e-14
UNIPROTKB|J9NZF3	1158	THBS2 "Uncharacterized protein	0.404	0.049	0.561	1.6e-14

UNIPROTKB|E1C3P2 THBS2 "Thrombospondin-2" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP + N NQ D+D+DGKGD CDPD D DGI +D DNCRL YNP Q+DSD     D+
Sbjct:   880 DNCPYIPNANQADHDKDGKGDACDPDDDNDGIPDDRDNCRLRYNPEQEDSDGDGRGDI 937

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=IEA

UNIPROTKB|E1C5E2 THBS2 "Thrombospondin-2" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP + N NQ D+D+DGKGD CDPD D DGI +D DNCRL YNP Q+DSD     D+
Sbjct:   880 DNCPYIPNANQADHDKDGKGDACDPDDDNDGIPDDRDNCRLRYNPEQEDSDGDGRGDI 937

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|P35440 THBS2 "Thrombospondin-2" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP + N NQ D+D+DGKGD CDPD D DGI +D DNCRL YNP Q+DSD     D+
Sbjct:   880 DNCPYIPNANQADHDKDGKGDACDPDDDNDGIPDDRDNCRLRYNPEQEDSDGDGRGDI 937

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

UNIPROTKB|F1NTB3 THBS2 "Thrombospondin-2" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 6.8e-16, P = 6.8e-16
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP + N NQ D+D+DGKGD CDPD D DGI +D DNCRL YNP Q+DSD     D+
Sbjct:   880 DNCPYIPNANQADHDKDGKGDACDPDDDNDGIPDDRDNCRLRYNPEQEDSDGDGRGDI 937

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=IEA

UNIPROTKB|P35442 THBS2 "Thrombospondin-2" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP ++N NQ D+DRDG+GD CDPD D DG+ +D DNCRL++NP+Q+D D     D+
Sbjct:   874 DNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDI 931

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:98738 Thbs2 "thrombospondin 2" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP ++N NQ D+D DGKGD CD D D DG+ +D DNCRL++NP+Q+DSD     D+
Sbjct:   874 DNCPYISNSNQADHDNDGKGDACDSDDDNDGVPDDRDNCRLVFNPDQEDSDGDGRGDI 931

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=ISO;IMP

GO:0031012 "extracellular matrix" evidence=IDA

GO:0051965 "positive regulation of synapse assembly" evidence=ISO

RGD|1310979 Thbs2 "thrombospondin 2" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
             DNCP ++N NQ D+D DGKGD CD D D DG+ +D DNCRL++NP+Q+DSD     D+
Sbjct:   874 DNCPYISNSNQADHDNDGKGDACDSDDDNDGVPDDRDNCRLVFNPDQEDSDGDGRGDI 931

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005604 "basement membrane" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=ISO;IEP;IDA

GO:0031012 "extracellular matrix" evidence=ISO

GO:0051965 "positive regulation of synapse assembly" evidence=IMP

UNIPROTKB|Q95116 THBS2 "Thrombospondin-2" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
             DNCP + N NQ D+DRDG+GD CD D D DGI +D DNCRL+ NP+Q+DSD     D
Sbjct:   872 DNCPHIPNANQADHDRDGQGDACDSDDDNDGIPDDRDNCRLVANPDQEDSDGDRRGD 928

GO:0008201 "heparin binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P0J8 LOC100858245 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 199 (75.1 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query:     1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
             +DNCP V N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSD     D
Sbjct:   876 LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGD 933

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0000187 "activation of MAPK activity" evidence=IEA

GO:0001786 "phosphatidylserine binding" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0001968 "fibronectin binding" evidence=IEA

GO:0002040 "sprouting angiogenesis" evidence=IEA

GO:0002544 "chronic inflammatory response" evidence=IEA

GO:0002581 "negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II" evidence=IEA

GO:0002605 "negative regulation of dendritic cell antigen processing and presentation" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003417 "growth plate cartilage development" evidence=IEA

GO:0005178 "integrin binding" evidence=IEA

GO:0005577 "fibrinogen complex" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0009749 "response to glucose stimulus" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0010748 "negative regulation of plasma membrane long-chain fatty acid transport" evidence=IEA

GO:0010751 "negative regulation of nitric oxide mediated signal transduction" evidence=IEA

GO:0010754 "negative regulation of cGMP-mediated signaling" evidence=IEA

GO:0010757 "negative regulation of plasminogen activation" evidence=IEA

GO:0010763 "positive regulation of fibroblast migration" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0016525 "negative regulation of angiogenesis" evidence=IEA

GO:0017134 "fibroblast growth factor binding" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

GO:0030169 "low-density lipoprotein particle binding" evidence=IEA

GO:0030511 "positive regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031091 "platelet alpha granule" evidence=IEA

GO:0032026 "response to magnesium ion" evidence=IEA

GO:0032695 "negative regulation of interleukin-12 production" evidence=IEA

GO:0040037 "negative regulation of fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042535 "positive regulation of tumor necrosis factor biosynthetic process" evidence=IEA

GO:0043032 "positive regulation of macrophage activation" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0043536 "positive regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0043652 "engulfment of apoptotic cell" evidence=IEA

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0050921 "positive regulation of chemotaxis" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0051918 "negative regulation of fibrinolysis" evidence=IEA

GO:0070051 "fibrinogen binding" evidence=IEA

GO:0070052 "collagen V binding" evidence=IEA

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

GO:2000462 "positive regulation of eukaryotic cell surface binding" evidence=IEA

UNIPROTKB|J9NZF3 THBS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 32/57 (56%), Positives = 41/57 (71%)

Query:     2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
             DNCP ++N NQ D+D DG+GD CD D D DG+ +D DNCRL++NP Q+DSD     D
Sbjct:   862 DNCPYISNANQADHDHDGQGDACDSDDDNDGVPDDRDNCRLVFNPGQEDSDGDGRGD 918

GO:0007155 "cell adhesion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
pfam02412	35	pfam02412, TSP_3, Thrombospondin type 3 repeat	1e-06

>gnl|CDD|202235 pfam02412, TSP_3, Thrombospondin type 3 repeat

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 14 DNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQ 48
          D+D DG GD CD D D DG+ +  DNC    N +Q
Sbjct: 1  DSDSDGIGDACDNDFDNDGVPDLLDNCPYNANIDQ 35

The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats. The repeat lacks defined secondary structure. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF02412	36	TSP_3: Thrombospondin type 3 repeat; InterPro: IPR	99.3
PF02412	36	TSP_3: Thrombospondin type 3 repeat; InterPro: IPR	97.99

>PF02412 TSP_3: Thrombospondin type 3 repeat; InterPro: IPR003367 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu

Probab=99.30  E-value=5.8e-13  Score=82.50  Aligned_cols=36  Identities=56%  Similarity=0.957  Sum_probs=31.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy2035          13 LDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQ   48 (141)
Q Consensus        13 ~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q   48 (141)
                      .|+|+|||||+|+.|.|+|||+|..||||+++|+.|
T Consensus         1 ~D~D~dg~GD~C~~D~D~Dgi~d~~DnCP~~~n~~Q   36 (36)
T PF02412_consen    1 EDSDGDGIGDACDDDSDGDGIPDACDNCPNVPNPDQ   36 (36)
T ss_dssp             --TTSSSS-GGGSSSTTSSSS-GGGHSSTTSTTTTS
T ss_pred             CcccCCCCCcccccCCCCCcccCcccCCCCCCCCCC
Confidence            489999999999999999999999999999999986

They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This entry represents the type 3 thrombospondin repeat, and related repeats present in other types of protein.; GO: 0005509 calcium ion binding, 0007155 cell adhesion; PDB: 1UX6_A 3FBY_C 1YO8_A 2RHP_A.

>PF02412 TSP_3: Thrombospondin type 3 repeat; InterPro: IPR003367 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu

Probab=97.99  E-value=3.2e-06  Score=52.38  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCcCCCCCCCCCc
Q psy2035          27 DLDGDGISNDEDNCRLIYNPNQDDSDAHYNADLILMRQVMAWAMYVTKI   75 (141)
Q Consensus        27 D~DgDGI~D~~DnCP~v~Np~Q~DsD~DGDgDGV~~~D~~D~CP~~~~~   75 (141)
                      |.|+|||.+   .|           +.|.|+|||+  |..|+||.++++
T Consensus         2 D~D~dg~GD---~C-----------~~D~D~Dgi~--d~~DnCP~~~n~   34 (36)
T PF02412_consen    2 DSDGDGIGD---AC-----------DDDSDGDGIP--DACDNCPNVPNP   34 (36)
T ss_dssp             -TTSSSS-G---GG-----------SSSTTSSSS---GGGHSSTTSTTT
T ss_pred             cccCCCCCc---cc-----------ccCCCCCccc--CcccCCCCCCCC
Confidence            778999976   44           2234668899  999999999997

They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. This entry represents the type 3 thrombospondin repeat, and related repeats present in other types of protein.; GO: 0005509 calcium ion binding, 0007155 cell adhesion; PDB: 1UX6_A 3FBY_C 1YO8_A 2RHP_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
3fby_A	551	The Crystal Structure Of The Signature Domain Of Ca		4e-11
2rhp_A	622	The Thrombospondin-1 Polymorphism Asn700ser Associa		3e-10
1yo8_A	634	Structure Of The C-Terminal Domain Of Human Thrombo		4e-10
1ux6_A	350	Structure Of A Thrombospondin C-Terminal Fragment R		2e-07

>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of Cartilage Oligomeric Matrix Protein. Length = 551

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNC  V N  Q D DRDG GD CDPD DGDG+ N++DNC L+ NP+Q ++D
Sbjct: 82  DNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTD 132

>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated With Cornoary Artery Disease Causes Local And Long-Ranging Changes In Protein Structure Length = 622

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V NP Q+D D +G+GD C  D+DGD + N+ DNC  +YN +Q D+D 
Sbjct: 227 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDG 278

>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human Thrombospondin-2 Length = 634

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           DNCP V NP Q+D D +G+GD C  D+DGD + N+ DNC  +YN +Q D+D 
Sbjct: 230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDG 281

>pdb|1UX6|A Chain A, Structure Of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core In The Type 3 Repeats Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 41/53 (77%)
Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDA 53
           +DNCP V N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSD 
Sbjct: 51  LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
1ux6_A	350	Thrombospondin-1; extracellular matrix, calcium bi	2e-16
1ux6_A	350	Thrombospondin-1; extracellular matrix, calcium bi	8e-15
1ux6_A	350	Thrombospondin-1; extracellular matrix, calcium bi	2e-13
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-12
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-11
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-10
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-08
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-04
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	2e-12
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	2e-12
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	2e-11
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	2e-10
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	3e-08

>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1 Length = 350

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 34/51 (66%), Positives = 40/51 (78%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP V N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSD
Sbjct: 52  DNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSD 102

>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1 Length = 350

 Score = 68.5 bits (167), Expect = 8e-15
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 1  MDNCPKVANPNQLDNDRDGKGDEC--DPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP   NP+QLD+D D  GD C  + D+D DG  N+ DNC  + N NQ D D
Sbjct: 13 ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHD 66

>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1 Length = 350

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 20/53 (37%), Positives = 29/53 (54%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAH 54
           DNC  V NP+Q D+D DG+GD C  D D D + + +D C    + ++ D    
Sbjct: 88  DNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRF 140

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP ++N NQ D+DRDG+GD CDPD D DG+ +D DNCRL++NP+Q+D D
Sbjct: 327 DNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLD 377

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 58.9 bits (142), Expect = 3e-11
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP V NP Q+D D +G+GD C  D+DGD + N+ DNC  +YN +Q D+D
Sbjct: 230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTD 280

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 22/58 (37%), Positives = 28/58 (48%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
           DNC  V NP+Q D D DG+GD C  D D D I + +D C      ++ D        L
Sbjct: 363 DNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPL 420

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 2/53 (3%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECD--PDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP V NP+Q D D D  GD+CD   D+D DG  N++DNC  I N NQ D D
Sbjct: 289 DNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHD 341

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 28/57 (49%), Positives = 38/57 (66%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
           DNCP + N  Q D D+DG GD CD D D DG+++++DNC+L++NP Q D D     D
Sbjct: 171 DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGD 227

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP V N  Q D+D DG+GD CD D D DG+ +  DNCRL+ NP Q+D+D
Sbjct: 238 DNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDAD 288

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNC  V N  Q D DRDG GD CDPD DGDG+ N++DNC L+ NP+Q ++D
Sbjct: 82  DNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTD 132

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 27/51 (52%), Positives = 33/51 (64%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNC    N +Q D D+DG+GD CD D+DGD I N  DNC  + N +Q DSD
Sbjct: 141 DNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSD 191

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 23/58 (39%), Positives = 25/58 (43%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
           DNC  V NP Q D DRDG GD C  D D D + +  D C         D  A     L
Sbjct: 274 DNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVDKIDVCPENAEVTLTDFRAFQTVVL 331

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens} Length = 551

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)

Query: 2   DNCPKVANPNQLDNDRDGKGDECD--PDLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP+ +NP+Q D D D  GD CD   D DGDG  +  DNC  + N  Q+DSD
Sbjct: 200 DNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSD 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	99.92
1ux6_A	350	Thrombospondin-1; extracellular matrix, calcium bi	99.92
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.85
1ux6_A	350	Thrombospondin-1; extracellular matrix, calcium bi	99.78
3fby_A	551	COMP, cartilage oligomeric matrix protein; signatu	99.73
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.67

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=99.92  E-value=6e-26  Score=203.92  Aligned_cols=95  Identities=38%  Similarity=0.681  Sum_probs=90.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035           1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY   71 (141)
Q Consensus         1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~   71 (141)
                      .||||.++|+.|+|+|+|||||+|+.|.|+|||++..|+||+++|+.|.|+|+||         |+|||+  |..|+||+
T Consensus       237 ~D~CP~~~n~~q~D~DgDGigD~cd~D~D~DGv~D~~D~CP~~pn~~q~D~DGDGigD~cd~D~D~DGv~--D~~D~CP~  314 (551)
T 3fby_A          237 RDNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDADRDGVGDVCQDDFDADKVV--DKIDVCPE  314 (551)
T ss_dssp             GCSSTTSCCTTCCCTTCSSSCTTTCSSSSCSSSCGGGCSSTTSCCTTCCCSSSSSSCSTTTTCTTCSSSC--GGGCSSTT
T ss_pred             hhcCCCcCcccccCCCCCCCCCccCCCCCCCCCcCccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCC--CCCCCCCC
Confidence            3899999999999999999999999999999999999999999999999999987         999999  99999999


Q ss_pred             CCCccccccccCCceEEeccCCcchhh
Q psy2035          72 VTKISTKMELRTYQMCVLTILSSTELT   98 (141)
Q Consensus        72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l~   98 (141)
                      ++++ ++|+||+||||+|+|++.+|+-
T Consensus       315 ~~~~-~~tdf~~~~~v~ldp~g~~~~~  340 (551)
T 3fby_A          315 NAEV-TLTDFRAFQTVVLDPEGDAQID  340 (551)
T ss_dssp             CSSC-CSCCCSSEEEEESSTTCSSCCC
T ss_pred             CCCC-CccccccceeEecCCCCCCCCC
Confidence            9999 9999999999999999887743

>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1

Probab=99.92  E-value=1.8e-25  Score=192.07  Aligned_cols=95  Identities=42%  Similarity=0.711  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035           1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY   71 (141)
Q Consensus         1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~   71 (141)
                      .||||.++|+.|.|+|+||+||+||.|.|+|||+|..|+||+++|+.|.|+|+||         |+|||+  |..|+||.
T Consensus        51 ~D~CP~~~n~~q~DtD~DG~gD~cd~D~DgDGv~D~~D~CP~~pn~~q~D~DgDGigD~Cd~D~D~DGV~--D~~D~CP~  128 (350)
T 1ux6_A           51 LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVP--DIDDICPE  128 (350)
T ss_dssp             GCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSCGGGCTTTTSCCTTCCCTTCSSSCGGGSSCTTCSSSC--TTTCSSTT
T ss_pred             ccCCCCCCCcccCccCCCCCccccccCCCCCCCCchhhcCCCCCCccccCCCCCCCCCCCCCCcCCCCCC--CcccCCCC
Confidence            3899999999999999999999999999999999999999999999999999887         999999  99999999


Q ss_pred             CCCccccccccCCceEEeccCCcchhh
Q psy2035          72 VTKISTKMELRTYQMCVLTILSSTELT   98 (141)
Q Consensus        72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l~   98 (141)
                      ++++ ..++|++|++|.|+|.+.++|.
T Consensus       129 ~~~~-~~~D~~~~~~v~ld~~g~~~i~  154 (350)
T 1ux6_A          129 NVDI-SETDFRRFQMIPLDPKGTSQND  154 (350)
T ss_dssp             CTTC-SSCCTTCCEEEESCSSCCSSCC
T ss_pred             CCcc-ccccccCceEEecCCCcccccc
Confidence            9999 9999999999999999877654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.85  E-value=9e-22  Score=178.16  Aligned_cols=94  Identities=43%  Similarity=0.782  Sum_probs=88.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035           1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY   71 (141)
Q Consensus         1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~   71 (141)
                      .|+||.++|+.|.|+|+|||||+|+.|.|+|||++..|+||+++|+.|.|+|+||         |+|||+  |..|+||+
T Consensus       326 ~D~cp~~~~~~~~D~D~DG~~D~cd~D~D~DGv~D~~D~cp~~~~~~~~D~D~DG~~d~cd~D~D~DGi~--D~~D~cp~  403 (634)
T 1yo8_A          326 QDNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIP--DIDDVCPE  403 (634)
T ss_dssp             GCSSTTSCCTTCCCTTCSSSCTTTCSCTTCSSSCGGGCTTTTSCCTTCCCTTCSSSCGGGSSCTTCSSSC--GGGCSSTT
T ss_pred             cccCCCCCCccccccCCCCCcccCCCccCCCCCCCccccCCCCCCccccCcCCCCCCCCCCCCCCCCCCc--cccccCCC
Confidence            3799999999999999999999999999999999999999999999999999887         999999  99999999


Q ss_pred             CCCccccccccCCceEEeccCCcchh
Q psy2035          72 VTKISTKMELRTYQMCVLTILSSTEL   97 (141)
Q Consensus        72 ~~~~~~~tDfr~yQ~V~Ldp~~~~~l   97 (141)
                      ++++ .+++|+.|++|.|+|.+.++|
T Consensus       404 ~~~~-~~~d~~~~~~v~ld~~g~~~i  428 (634)
T 1yo8_A          404 NNAI-SETDFRNFQMVPLDPKGTTQI  428 (634)
T ss_dssp             CTTC-CSCCCSSEEEEESSCCSSSCC
T ss_pred             cCCc-ccccccccceEecCCCCCccc
Confidence            9999 999999999999998877664

>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1

Probab=99.78  E-value=1.8e-19  Score=154.94  Aligned_cols=80  Identities=39%  Similarity=0.557  Sum_probs=73.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCC
Q psy2035           2 DNCPKVANPNQLDNDRDGKGDECDP--DLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAM   70 (141)
Q Consensus         2 DNCP~v~N~~Q~DtD~DGiGDaCD~--D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP   70 (141)
                      +|||.++||.|.|+|+|||||+||.  |.|+|||+|..|+||+++|+.|.|+|+||         |+|||+  |..|+||
T Consensus        14 ~~cp~~~Np~q~D~D~DGvgD~cD~c~D~DgDGv~D~~D~CP~~~n~~q~DtD~DG~gD~cd~D~DgDGv~--D~~D~CP   91 (350)
T 1ux6_A           14 DNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP--DDKDNCR   91 (350)
T ss_dssp             HHSBTTTCCSSCCTTSSSBCTTTCCCCCTTCSSSCGGGCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSC--GGGCTTT
T ss_pred             HhCCCCCCCCCCCCCCCCCCcccCCCCcCCCCCCCCcccCCCCCCCcccCccCCCCCccccccCCCCCCCC--chhhcCC
Confidence            5899999999999999999999996  99999999999999999999999999988         999999  9999999


Q ss_pred             CCCCccccccccCC
Q psy2035          71 YVTKISTKMELRTY   84 (141)
Q Consensus        71 ~~~~~~~~tDfr~y   84 (141)
                      ..++. .+.|..+.
T Consensus        92 ~~pn~-~q~D~DgD  104 (350)
T 1ux6_A           92 LVPNP-DQKDSDGD  104 (350)
T ss_dssp             TSCCT-TCCCTTCS
T ss_pred             CCCCc-cccCCCCC
Confidence            99997 66655443

>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell adhesion, disease mutation, dwarfism, EGF-like domain, glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=154.37  Aligned_cols=78  Identities=42%  Similarity=0.713  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------
Q psy2035           1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY-------------------------   55 (141)
Q Consensus         1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG-------------------------   55 (141)
                      +||||.++|+.|.|+|+|||||+|+.|.|+|||+|..|+||+++|+.|.|+|+||                         
T Consensus        81 ~DnC~~~~n~~Q~D~D~DGigD~Cd~D~DgDGi~D~~DnCp~~~n~~q~D~D~DGvGD~~DnCp~~~n~~q~DtDgDGiG  160 (551)
T 3fby_A           81 KDNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKNDDQKDTDQDGRG  160 (551)
T ss_dssp             CCSSSSSCCTTCCCTTCSSSCGGGCTTTTCSSSCGGGCSSSSSCCTTCCCTTCSSSCGGGCSSTTSCCTTCCCTTSSSSC
T ss_pred             ccCCCCCCCccccccCCCCCCccCCCCCCCCCCCchhhcCCcccCcccccccCCcCCCccccCCCCCCCcccccCCCccc
Confidence            4899999999999999999999999999999999988888888776655554443                         


Q ss_pred             -------CCCccccCCcCCCCCCCCCccccccc
Q psy2035          56 -------NADLILMRQVMAWAMYVTKISTKMEL   81 (141)
Q Consensus        56 -------DgDGV~~~D~~D~CP~~~~~~~~tDf   81 (141)
                             |+|||.  |..|+||..++. .+.|.
T Consensus       161 D~cD~D~DgDGi~--d~~DnCP~~~n~-~q~Ds  190 (551)
T 3fby_A          161 DACDDDIDGDRIR--NQADNCPRVPNS-DQKDS  190 (551)
T ss_dssp             GGGCSSTTCSSSC--STTCSSTTSCCT-TCCCT
T ss_pred             cccccCCCCCCCC--CccccCCCcCCC-ccCCC
Confidence                   666777  777777777665 44443

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.67  E-value=5.5e-17  Score=147.00  Aligned_cols=72  Identities=40%  Similarity=0.769  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------
Q psy2035           2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY--------------------------   55 (141)
Q Consensus         2 DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG--------------------------   55 (141)
                      ||||.++|+.|+|+|+|||||+||.|.|+|||+|..|+||+++|+.|.|+|+||                          
T Consensus       230 D~cp~~~n~~~~D~D~DG~~D~~d~D~D~DGi~d~~D~cp~~~n~~~~D~D~DGi~D~~D~cp~~~~~~~~D~D~DG~~D  309 (634)
T 1yo8_A          230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGD  309 (634)
T ss_dssp             CSSTTSCCTTCCCTTCSSSCGGGCSSTTSSSSCTTTCSSTTSCCTTCCCTTCSSSCGGGCSSTTSCCTTCCCTTSSSSCT
T ss_pred             ccCCCCCCCCccCcCCCCCCCCCCCCCCCCCCCccccCCCCcCCCCCCCCCCCCCCcccccccccCCCcccccCCCCCCc
Confidence            799999999999999999999999999999999999999999988888777665                          


Q ss_pred             --------CCCccccCCcCCCCCCCCCc
Q psy2035          56 --------NADLILMRQVMAWAMYVTKI   75 (141)
Q Consensus        56 --------DgDGV~~~D~~D~CP~~~~~   75 (141)
                              |+|||.  |..|+||..++.
T Consensus       310 ~cd~~~D~DgDGi~--d~~D~cp~~~~~  335 (634)
T 1yo8_A          310 QCDNNEDIDDDGHQ--NNQDNCPYISNA  335 (634)
T ss_dssp             TTCCCCCTTSSSSC--GGGCSSTTSCCT
T ss_pred             cccCCCCcCcCCCc--cccccCCCCCCc
Confidence                    567777  777888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1ux6a2	124	g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo	3e-10
d1ux6a2	124	g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo	6e-06

>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Small proteins
fold: TSP type-3 repeat
superfamily: TSP type-3 repeat
family: TSP type-3 repeat
domain: Thrombospondin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-10
 Identities = 28/54 (51%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 1  MDNCPKVANPNQLDNDRDGKGDECDP--DLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP   NP+QLD+D D  GD CD   D+D DG  N+ DNC  + N NQ D D
Sbjct: 3  ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHD 56

>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Small proteins
fold: TSP type-3 repeat
superfamily: TSP type-3 repeat
family: TSP type-3 repeat
domain: Thrombospondin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNC 40
            DNC  V NP+Q D+D DG+GD C  D D D + + +D C
Sbjct: 77  KDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDIC 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1ux6a2	124	Thrombospondin-1 {Human (Homo sapiens) [TaxId: 960	99.71
d1ux6a2	124	Thrombospondin-1 {Human (Homo sapiens) [TaxId: 960	99.67
d1ux6a1	216	Thrombospondin C-terminal domain {Human (Homo sapi	91.62

>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP type-3 repeat
superfamily: TSP type-3 repeat
family: TSP type-3 repeat
domain: Thrombospondin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=124.18  Aligned_cols=77  Identities=40%  Similarity=0.599  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCC
Q psy2035           2 DNCPKVANPNQLDNDRDGKGDECD--PDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAM   70 (141)
Q Consensus         2 DNCP~v~N~~Q~DtD~DGiGDaCD--~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP   70 (141)
                      ||||.++|+.|+|+|+|||++.|+  .|.|+|||++..|+||+.+++.+.+++++|         |+|||.  +..+.||
T Consensus         4 D~Cp~~~Np~q~D~DgDGv~D~~D~~~D~DgDGv~d~~D~cp~~~~~~~~D~D~Dg~gd~~d~D~D~DGi~--D~~D~cp   81 (124)
T d1ux6a2           4 DNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP--DDKDNCR   81 (124)
T ss_dssp             HHSBTTTCCSSCCTTSSSBCTTTCCCCCTTCSSSCGGGCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSC--GGGCTTT
T ss_pred             cCCCCCCCCCCccCCCCcCccccccccccCCCcccccccCcccccCcccccccCCCCcccccccccccccc--ccccccc
Confidence            799999999999999999999998  589999999999999999999888888876         888898  9999999


Q ss_pred             CCCCccccccc
Q psy2035          71 YVTKISTKMEL   81 (141)
Q Consensus        71 ~~~~~~~~tDf   81 (141)
                      ..++. .+.+.
T Consensus        82 ~~~n~-~~~D~   91 (124)
T d1ux6a2          82 LVPNP-DQKDS   91 (124)
T ss_dssp             TSCCT-TCCCT
T ss_pred             ccccc-ccccc
Confidence            88775 44443

>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TSP type-3 repeat
superfamily: TSP type-3 repeat
family: TSP type-3 repeat
domain: Thrombospondin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-17  Score=120.04  Aligned_cols=73  Identities=49%  Similarity=0.824  Sum_probs=70.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCccccCCcCCCCCC
Q psy2035           1 MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHY---------NADLILMRQVMAWAMY   71 (141)
Q Consensus         1 ~DNCP~v~N~~Q~DtD~DGiGDaCD~D~DgDGI~D~~DnCP~v~Np~Q~DsD~DG---------DgDGV~~~D~~D~CP~   71 (141)
                      .|+||..+++.+.|+|++|+++.|+.|.|+|||++..|+||+.+++.|.|+|+||         |+|||+  |..|+||+
T Consensus        41 ~D~cp~~~~~~~~D~D~Dg~gd~~d~D~D~DGi~D~~D~cp~~~n~~~~D~DgDGi~D~~d~D~D~DGv~--D~~D~cP~  118 (124)
T d1ux6a2          41 LDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVP--DIDDICPE  118 (124)
T ss_dssp             GCSSTTSCCTTCCCTTCSSSCGGGCSSTTCSSSCGGGCTTTTSCCTTCCCTTCSSSCGGGSSCTTCSSSC--TTTCSSTT
T ss_pred             ccCcccccCcccccccCCCCcccccccccccccccccccccccccccccccCCCCCCCcCCCCcCCCCCC--CCCCCCCC
Confidence            3799999999999999999999999999999999999999999999999999988         999999  99999999


Q ss_pred             CCCc
Q psy2035          72 VTKI   75 (141)
Q Consensus        72 ~~~~   75 (141)
                      ++.+
T Consensus       119 ~~~~  122 (124)
T d1ux6a2         119 NVDI  122 (124)
T ss_dssp             CTTC
T ss_pred             CcCc
Confidence            9987

>d1ux6a1 b.29.1.16 (A:937-1152) Thrombospondin C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Thrombospondin C-terminal domain
domain: Thrombospondin C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.029  Score=43.83  Aligned_cols=20  Identities=20%  Similarity=0.321  Sum_probs=17.6

Q ss_pred             ccccCCceEEeccCCcchhh
Q psy2035          79 MELRTYQMCVLTILSSTELT   98 (141)
Q Consensus        79 tDfr~yQ~V~Ldp~~~~~l~   98 (141)
                      ||||.||+|.|||+++.|+.
T Consensus         1 tdf~~~~~v~ldp~g~~q~~   20 (216)
T d1ux6a1           1 TDFRRFQMIPLDPKGTSQND   20 (216)
T ss_dssp             CCTTCCEEEESCSSCCSSCC
T ss_pred             CCcccceEEEcCCCCCCCCC
Confidence            79999999999999887743