Psyllid ID: psy2044

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW
ccccEEEEEccEEEEccccccccccHHHHHHHHHccccHHHHHHccccccccEEEcccEEEEccccccccccHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEEHHHHHHHHHHHHEEccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccEEHHHHHHHcccccccccccccccc
ccccEEEEEccEEEEHHHHHHHcccccHHHHHHccccHHHHHHHcccccccEEEEcccEEEHHHHHHcccccHHHHHHHccccHHHHHccccccHHHHHHHHHccccccccccccccccccccEEccccccHHHHcccHHHHHHHHccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHEEEEHHccccccccccccEcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccc
MSQEFLIEHKGQKHNVAKFlkfhpggsntikyfkngdITEQLIKthhspsayghhvprkhnvakflkfhpggsntikyfkngdITEQLIKTHHSPSAYELLKdyrvsddnpqeyireegdiehlvdwtkpmfwqvgslgpryrewvlapvdrnlrLFHSDFIEkltrtpvylvpsvwVPITLLLLYIGYgrvshfymathtpftqlsLFTWCCWYYICGLLLWPLLEYTIHRWIFhlkpnnsrMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIfhlkppdnsplliTLHFglhglhhkvpfddgrllfppvpaGILMYLGYSLAtslfiptwnaplVLAGVITGYLTYDLIHFYlhygsphegsylynmkryhnqhhfahyesgfgisskFWDHIFGTLIVLRKLNRTLKW
MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEgdiehlvdwTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEkltrtpvylvpsVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW
MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKllryytrlfvylvllvlylwfttvATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW
*************HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDG**********ILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNR****
*SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPG***************************ELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRK*******
MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW
MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRK*N*****
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MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query452 2.2.26 [Sep-21-2011]
Q4R4P4372 Fatty acid 2-hydroxylase N/A N/A 0.407 0.494 0.473 7e-42
Q2LAM0372 Fatty acid 2-hydroxylase yes N/A 0.387 0.470 0.484 1e-41
Q7L5A8372 Fatty acid 2-hydroxylase yes N/A 0.404 0.491 0.465 6e-41
Q5MPP0372 Fatty acid 2-hydroxylase yes N/A 0.396 0.481 0.462 9e-41
Q9SUC5237 Fatty acid 2-hydroxylase yes N/A 0.323 0.616 0.426 5e-26
O48916237 Fatty acid 2-hydroxylase no N/A 0.309 0.590 0.402 2e-24
O13846347 Ceramide very long chain yes N/A 0.325 0.423 0.401 1e-22
Q03529384 Ceramide very long chain yes N/A 0.331 0.390 0.371 9e-22
P04166146 Cytochrome b5 type B OS=R no N/A 0.139 0.431 0.349 0.0001
Q9CQX2146 Cytochrome b5 type B OS=M no N/A 0.137 0.424 0.349 0.0005
>sp|Q4R4P4|FA2H_MACFA Fatty acid 2-hydroxylase OS=Macaca fascicularis GN=FA2H PE=2 SV=1 Back     alignment and function desciption
 Score =  172 bits (435), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 125/190 (65%), Gaps = 6/190 (3%)

Query: 257 LFVYLVLLVLYLWFTTVATVGVH-----DTSVDISLEASWCCWYYICGLLLWPLLEYTIH 311
           ++V LVL + + ++ T A   V       T   +++  S     ++ G+ LW L+EY IH
Sbjct: 175 IWVPLVLYLSWSYYRTFAQGNVRLFTSFTTEYALAVPKSMFPGLFMLGIFLWSLIEYLIH 234

Query: 312 RWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIP 371
           R++FH+KPP +S  LI LHF +HG HHK PFD  RL+FPPVPA +++ + Y L   L +P
Sbjct: 235 RFLFHMKPPSDSYYLIMLHFVMHGQHHKAPFDGSRLVFPPVPASLVIGVFY-LCLQLILP 293

Query: 372 TWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSK 431
                 V AG + GY+ YD+ H+YLH+GSPH GSYLYN+K +H +HHFAH +SGFGIS+K
Sbjct: 294 EAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHRGSYLYNLKAHHVKHHFAHQKSGFGISTK 353

Query: 432 FWDHIFGTLI 441
            WD+ F TLI
Sbjct: 354 LWDYCFHTLI 363
Required for alpha-hydroxylation of free fatty acids and the formation of alpha-hydroxylated sphingolipids.
Macaca fascicularis (taxid: 9541)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q2LAM0|FA2H_RAT Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2 Back     alignment and function description
>sp|Q7L5A8|FA2H_HUMAN Fatty acid 2-hydroxylase OS=Homo sapiens GN=FA2H PE=1 SV=1 Back     alignment and function description
>sp|Q5MPP0|FA2H_MOUSE Fatty acid 2-hydroxylase OS=Mus musculus GN=Fa2h PE=1 SV=1 Back     alignment and function description
>sp|Q9SUC5|FAH2_ARATH Fatty acid 2-hydroxylase 2 OS=Arabidopsis thaliana GN=FAH2 PE=1 SV=1 Back     alignment and function description
>sp|O48916|FAH1_ARATH Fatty acid 2-hydroxylase 1 OS=Arabidopsis thaliana GN=FAH1 PE=1 SV=1 Back     alignment and function description
>sp|O13846|SCS7_SCHPO Ceramide very long chain fatty acid hydroxylase-like protein C19G12.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19G12.08 PE=3 SV=1 Back     alignment and function description
>sp|Q03529|SCS7_YEAST Ceramide very long chain fatty acid hydroxylase SCS7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS7 PE=1 SV=1 Back     alignment and function description
>sp|P04166|CYB5B_RAT Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2 Back     alignment and function description
>sp|Q9CQX2|CYB5B_MOUSE Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
193662021330 PREDICTED: fatty acid 2-hydroxylase-like 0.342 0.469 0.782 1e-65
291390479372 PREDICTED: fatty acid 2-hydroxylase [Ory 0.679 0.825 0.349 2e-52
332235070451 PREDICTED: fatty acid 2-hydroxylase-like 0.809 0.811 0.337 9e-49
332374346319 unknown [Dendroctonus ponderosae] 0.347 0.492 0.582 2e-47
270010364318 hypothetical protein TcasGA2_TC009754 [T 0.329 0.468 0.58 2e-46
380011939333 PREDICTED: fatty acid 2-hydroxylase-like 0.342 0.465 0.554 1e-44
328787898306 PREDICTED: fatty acid 2-hydroxylase-like 0.345 0.509 0.573 1e-44
224064163369 PREDICTED: fatty acid 2-hydroxylase [Tae 0.670 0.821 0.330 6e-44
335289141372 PREDICTED: fatty acid 2-hydroxylase [Sus 0.407 0.494 0.494 2e-43
195382153356 GJ20550 [Drosophila virilis] gi|19414459 0.767 0.974 0.319 6e-43
>gi|193662021|ref|XP_001948157.1| PREDICTED: fatty acid 2-hydroxylase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 136/156 (87%), Gaps = 1/156 (0%)

Query: 297 ICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGI 356
           I GLLLWPL+EYTIHRW+FHL+PPDNSPLLITLHFG+HGLHHKVPFDD RLLFPP PA +
Sbjct: 175 ILGLLLWPLIEYTIHRWLFHLQPPDNSPLLITLHFGIHGLHHKVPFDDRRLLFPPGPAAV 234

Query: 357 LMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQ 416
           L+   Y++   LF P W APLVLAG+I GY+TYDLIHFYLHYG P EGSYLY MKRYHNQ
Sbjct: 235 LISAAYAIYLMLF-PHWMAPLVLAGMIAGYVTYDLIHFYLHYGCPREGSYLYTMKRYHNQ 293

Query: 417 HHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW 452
           HHFAH+ESGFGISS+FWDHIFGT I L+KL+R LKW
Sbjct: 294 HHFAHHESGFGISSQFWDHIFGTAIALKKLSRCLKW 329

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|291390479|ref|XP_002711768.1| PREDICTED: fatty acid 2-hydroxylase [Oryctolagus cuniculus] Back     alignment and taxonomy information
>gi|332235070|ref|XP_003266726.1| PREDICTED: fatty acid 2-hydroxylase-like [Nomascus leucogenys] Back     alignment and taxonomy information
>gi|332374346|gb|AEE62314.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|270010364|gb|EFA06812.1| hypothetical protein TcasGA2_TC009754 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380011939|ref|XP_003690049.1| PREDICTED: fatty acid 2-hydroxylase-like [Apis florea] Back     alignment and taxonomy information
>gi|328787898|ref|XP_001122312.2| PREDICTED: fatty acid 2-hydroxylase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|224064163|ref|XP_002188183.1| PREDICTED: fatty acid 2-hydroxylase [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|335289141|ref|XP_003126916.2| PREDICTED: fatty acid 2-hydroxylase [Sus scrofa] Back     alignment and taxonomy information
>gi|195382153|ref|XP_002049795.1| GJ20550 [Drosophila virilis] gi|194144592|gb|EDW60988.1| GJ20550 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query452
FB|FBgn0050502355 fa2h "fatty acid 2-hydroylase" 0.340 0.433 0.496 7e-76
ZFIN|ZDB-GENE-031219-4377 fa2h "fatty acid 2-hydroxylase 0.320 0.384 0.506 2.6e-67
UNIPROTKB|F1S436372 FA2H "Uncharacterized protein" 0.353 0.430 0.552 7.8e-54
UNIPROTKB|F1P9W0372 FA2H "Uncharacterized protein" 0.353 0.430 0.559 2.3e-52
UNIPROTKB|E1BGC2372 FA2H "Uncharacterized protein" 0.351 0.427 0.543 1.8e-50
TAIR|locus:2133054237 FAH2 "AT4G20870" [Arabidopsis 0.305 0.582 0.450 9.8e-50
RGD|1310347372 Fa2h "fatty acid 2-hydroxylase 0.320 0.389 0.547 3.3e-49
UNIPROTKB|Q2LAM0372 Fa2h "Fatty acid 2-hydroxylase 0.320 0.389 0.547 3.3e-49
UNIPROTKB|Q7L5A8372 FA2H "Fatty acid 2-hydroxylase 0.351 0.427 0.506 8.7e-49
MGI|MGI:2443327372 Fa2h "fatty acid 2-hydroxylase 0.320 0.389 0.534 1.1e-48
FB|FBgn0050502 fa2h "fatty acid 2-hydroylase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 437 (158.9 bits), Expect = 7.0e-76, Sum P(3) = 7.0e-76
 Identities = 79/159 (49%), Positives = 109/159 (68%)

Query:   295 YYICGLLLWPLLEYTIHRWIFHLKPPDNS-PLLITLHFGLHGLHHKVPFDDGRLLFPPVP 353
             Y++ G+LLW  LEYT+HRW+FH+K  + S   L T HF +HGLHHKVPFD  RL+FPP+P
Sbjct:   200 YFLFGVLLWSFLEYTLHRWVFHVKLSNKSGSWLCTFHFMIHGLHHKVPFDPMRLVFPPLP 259

Query:   354 AGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRY 413
               +L  + Y   T L     +  ++L+G + GYL YD++H+YLHYG+P   ++++ MKRY
Sbjct:   260 GAVLAAVIY---TPLSFVLSHPRVILSGALAGYLCYDMMHYYLHYGNPSLWAFVH-MKRY 315

Query:   414 HNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRTLKW 452
             H+ HHF+H   G+GISS  WD +F T I LRKL   L+W
Sbjct:   316 HHHHHFSHQTLGYGISSPLWDVVFKTRIHLRKLRYQLRW 354
GO:0005506 "iron ion binding" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=IEA
GO:0006665 "sphingolipid metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0052722 "fatty acid in-chain hydroxylase activity" evidence=IDA
ZFIN|ZDB-GENE-031219-4 fa2h "fatty acid 2-hydroxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S436 FA2H "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9W0 FA2H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGC2 FA2H "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2133054 FAH2 "AT4G20870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1310347 Fa2h "fatty acid 2-hydroxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q2LAM0 Fa2h "Fatty acid 2-hydroxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L5A8 FA2H "Fatty acid 2-hydroxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443327 Fa2h "fatty acid 2-hydroxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
PLN02434237 PLN02434, PLN02434, fatty acid hydroxylase 3e-43
PLN02434237 PLN02434, PLN02434, fatty acid hydroxylase 9e-21
COG3000271 COG3000, ERG3, Sterol desaturase [Lipid metabolism 3e-11
pfam0017374 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid 9e-08
COG5274164 COG5274, CYB5, Cytochrome b involved in lipid meta 3e-05
pfam04116114 pfam04116, FA_hydroxylase, Fatty acid hydroxylase 4e-05
pfam0017374 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid 4e-04
>gnl|CDD|178053 PLN02434, PLN02434, fatty acid hydroxylase Back     alignment and domain information 
 Score =  151 bits (384), Expect = 3e-43
 Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 299 GLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILM 358
           G+ +W LLEY +HR++FH+K    S    T H+ LHG HHK P D  RL+FPP    IL 
Sbjct: 90  GVFIWTLLEYILHRFLFHIKT--KSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILC 147

Query: 359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHH 418
              ++L      P   AP +  G + GY+ YD  H++LH+G P     L N+K+YH  HH
Sbjct: 148 VPFWNLIALFATPAT-APALFGGGLLGYVMYDCTHYFLHHGQPSTD-VLRNLKKYHLNHH 205

Query: 419 FAHYESGFGISSKFWDHIFGTL 440
           F   + GFGI+S  WD +FGTL
Sbjct: 206 FRDQDKGFGITSSLWDRVFGTL 227

Length = 237
>gnl|CDD|178053 PLN02434, PLN02434, fatty acid hydroxylase Back     alignment and domain information
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain Back     alignment and domain information
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily Back     alignment and domain information
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 452
KOG0539|consensus240 100.0
PLN02434237 fatty acid hydroxylase 100.0
PLN02434237 fatty acid hydroxylase 99.87
KOG0539|consensus240 99.86
KOG0537|consensus124 99.71
COG3000271 ERG3 Sterol desaturase [Lipid metabolism] 99.56
KOG0537|consensus124 99.56
COG5274164 CYB5 Cytochrome b involved in lipid metabolism [En 99.46
KOG0536|consensus145 99.46
PF0017376 Cyt-b5: Cytochrome b5-like Heme/Steroid binding do 99.36
PF04116114 FA_hydroxylase: Fatty acid hydroxylase superfamily 99.31
PLN03199485 delta6-acyl-lipid desaturase-like protein; Provisi 99.25
KOG0536|consensus145 99.22
PLN03198526 delta6-acyl-lipid desaturase; Provisional 99.2
PF0017376 Cyt-b5: Cytochrome b5-like Heme/Steroid binding do 99.18
PLN02252888 nitrate reductase [NADPH] 99.07
COG5274164 CYB5 Cytochrome b involved in lipid metabolism [En 99.02
PLN03198526 delta6-acyl-lipid desaturase; Provisional 98.83
PLN03199485 delta6-acyl-lipid desaturase-like protein; Provisi 98.76
PLN02869 620 fatty aldehyde decarbonylase 98.75
PLN02252888 nitrate reductase [NADPH] 98.68
KOG4576|consensus167 98.58
KOG4232|consensus430 98.56
KOG4232|consensus430 98.55
PLN02601303 beta-carotene hydroxylase 98.31
KOG0874|consensus287 98.25
KOG0873|consensus283 98.16
KOG0872|consensus312 97.76
KOG4576|consensus167 97.65
PF04116114 FA_hydroxylase: Fatty acid hydroxylase superfamily 97.44
PF10520178 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme 97.19
KOG3011|consensus293 96.47
COG489281 Predicted heme/steroid binding protein [General fu 95.27
PRK07424 406 bifunctional sterol desaturase/short chain dehydro 95.15
PLN02601303 beta-carotene hydroxylase 93.63
COG489281 Predicted heme/steroid binding protein [General fu 86.73
cd03512314 Alkane-hydroxylase Alkane hydroxylase is a bacteri 82.01
KOG1110|consensus183 81.69
>KOG0539|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-66  Score=479.77  Aligned_cols=235  Identities=46%  Similarity=0.881  Sum_probs=210.0

Q ss_pred             ccccccccCCCccccccccCcCcceeeecccCc-cccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhccccccccc
Q psy2044         120 DIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDR-NLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMA  198 (452)
Q Consensus       120 ~~e~~~d~~KPll~Qv~nL~d~y~~w~~~p~~~-~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  198 (452)
                      +.+.++|++||+++||++++|+|+||+|+|+++ ..|+|++|++|.||||.||++|++|+|++++.    +...      
T Consensus         3 ~~~~~vDl~kpll~Qvg~lg~~Y~ewVHqP~~~~g~r~f~sdflE~lTkT~Ww~VP~iWlPvVvy~----~~~~------   72 (240)
T KOG0539|consen    3 AKNHTVDLKKPLLFQVGHLGEDYDEWVHQPVDRGGLRLFDSDFLEPLTKTVWWVVPLIWLPVVVYG----FLSF------   72 (240)
T ss_pred             ccccceeccccchhhhccchHHHHHHhcCccccCCCccccchHHHHhhcchhheehhhhhhhhhhe----eeee------
Confidence            356788999999999999999999999999987 99999999999999999999999999999882    1100      


Q ss_pred             cCCCcccchhhhhhhhHHHHhhhhhHHHHhhhhccccccCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHhhhhhcccc
Q psy2044         199 THTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGV  278 (452)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~ey~~hr~~fh~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~  278 (452)
                      +                                         .+                                   +
T Consensus        73 t-----------------------------------------~~-----------------------------------~   76 (240)
T KOG0539|consen   73 T-----------------------------------------TS-----------------------------------Y   76 (240)
T ss_pred             c-----------------------------------------cc-----------------------------------c
Confidence            0                                         00                                   0


Q ss_pred             cCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCCCccccChHHHHHHH
Q psy2044         279 HDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILM  358 (452)
Q Consensus       279 ~~~~~~~~l~~~~~~~~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~~rlvfpP~~~~~~~  358 (452)
                      +.     ++ ..+.++ |++|++.||++||.+|||+||.++.+++++..++||.+||+||+.|+|+.||||||+++++++
T Consensus        77 ~~-----s~-~~~~~~-f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~  149 (240)
T KOG0539|consen   77 ND-----SV-PVFSGL-FVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILA  149 (240)
T ss_pred             cc-----hh-hhhhHH-HHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHH
Confidence            00     00 124454 899999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccCCCCCCcceeccchhhhcC
Q psy2044         359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFG  438 (452)
Q Consensus       359 ~~~~~l~~~~~~~~~~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~~~~~nfGVts~~wD~vFG  438 (452)
                      +++|.++++++ +...|.++++|.++||++||++||++||++|++.++++.+|++|..|||++++.+|||||++||+|||
T Consensus       150 ~pfy~~~~~vl-~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~VFg  228 (240)
T KOG0539|consen  150 APFYLILSLVL-PHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPKRPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYVFG  228 (240)
T ss_pred             HHHHHHHHHhc-CcchhhhhhccchhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHhhhhhhccccCccccHHHHHHHhc
Confidence            99999999999 88999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             ccccccc-ccc
Q psy2044         439 TLIVLRK-LNR  448 (452)
Q Consensus       439 T~~~~~~-~~~  448 (452)
                      |....++ .|+
T Consensus       229 Tl~~~~~~~k~  239 (240)
T KOG0539|consen  229 TLGPLKPLYKL  239 (240)
T ss_pred             cCCCCcccccc
Confidence            9988765 443

>PLN02434 fatty acid hydroxylase Back     alignment and domain information
>PLN02434 fatty acid hydroxylase Back     alignment and domain information
>KOG0539|consensus Back     alignment and domain information
>KOG0537|consensus Back     alignment and domain information
>COG3000 ERG3 Sterol desaturase [Lipid metabolism] Back     alignment and domain information
>KOG0537|consensus Back     alignment and domain information
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>KOG0536|consensus Back     alignment and domain information
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] Back     alignment and domain information
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases Back     alignment and domain information
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information
>KOG0536|consensus Back     alignment and domain information
>PLN03198 delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] Back     alignment and domain information
>PLN02252 nitrate reductase [NADPH] Back     alignment and domain information
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>PLN03198 delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information
>PLN02869 fatty aldehyde decarbonylase Back     alignment and domain information
>PLN02252 nitrate reductase [NADPH] Back     alignment and domain information
>KOG4576|consensus Back     alignment and domain information
>KOG4232|consensus Back     alignment and domain information
>KOG4232|consensus Back     alignment and domain information
>PLN02601 beta-carotene hydroxylase Back     alignment and domain information
>KOG0874|consensus Back     alignment and domain information
>KOG0873|consensus Back     alignment and domain information
>KOG0872|consensus Back     alignment and domain information
>KOG4576|consensus Back     alignment and domain information
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases Back     alignment and domain information
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1 Back     alignment and domain information
>KOG3011|consensus Back     alignment and domain information
>COG4892 Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated Back     alignment and domain information
>PLN02601 beta-carotene hydroxylase Back     alignment and domain information
>COG4892 Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases Back     alignment and domain information
>KOG1110|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
1icc_A87 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 4e-05
3mus_A87 2a Resolution Structure Of Rat Type B Cytochrome B5 8e-05
1b5m_A84 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 9e-05
2i89_A93 Structure Of Septuple Mutant Of Rat Outer Mitochond 9e-05
2m33_A104 Solution Nmr Structure Of Full-length Oxidized Micr 1e-04
1eue_A86 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 1e-04
1awp_A92 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 1e-04
1lj0_A92 Structure Of Quintuple Mutant Of The Rat Outer Mito 2e-04
1hko_A104 Nmr Structure Of Bovine Cytochrome B5 Length = 104 7e-04
1bfx_A99 The Solution Nmr Structure Of The B Form Of Oxidize 8e-04
1i87_A98 Solution Structure Of The Water-Soluble Fragment Of 8e-04
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 87 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 58  RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
           R +++ +FL  HPGG   ++     D TE      HSP A E+LK Y + D +P +
Sbjct: 28  RVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMLKQYYIGDVHPND 83
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 84 Back     alignment and structure
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 93 Back     alignment and structure
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal Rabbit Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 86 Back     alignment and structure
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer Mitocondrial Cytochrome B5. Length = 92 Back     alignment and structure
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat Microsomal Cytochrome B5, Minimized Average Structure Length = 99 Back     alignment and structure
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat Hepatic Apocytochrome B5 Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query452
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 6e-09
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 4e-05
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 1e-08
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 8e-05
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 3e-08
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 1e-04
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 3e-08
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 1e-04
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 1e-07
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 5e-04
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 2e-07
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 6e-04
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 3e-07
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 Back     alignment and structure
 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 61  NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
           +V  FL  HPGG   +      D TE      HS  A E++K Y+V
Sbjct: 33  DVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKV 78
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104 Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104 Back     alignment and structure
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 Back     alignment and structure
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82 Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Length = 90 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 99.64
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 99.62
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 99.61
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 99.61
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 99.6
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 99.57
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 99.55
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 99.55
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 99.54
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 99.48
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 99.45
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 99.44
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 99.43
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 99.4
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 99.39
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 99.39
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 99.37
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 99.35
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 99.22
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 99.19
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 98.97
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 98.92
1j03_A102 Putative steroid binding protein; alpha and beta, 98.81
1j03_A102 Putative steroid binding protein; alpha and beta, 98.66
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Back     alignment and structure
Probab=99.64  E-value=2.1e-17  Score=136.94  Aligned_cols=79  Identities=25%  Similarity=0.339  Sum_probs=73.0

Q ss_pred             CccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcc
Q psy2044          36 GDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEY  114 (452)
Q Consensus        36 kDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~  114 (452)
                      +.+|.+|+++|++ ++||+++.++|||||+|+++||||.++|+.++|+|+|+.|....||+.++++|++|+||.+.+++.
T Consensus        10 ~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~~~~   89 (92)
T 3ner_A           10 TYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDL   89 (92)
T ss_dssp             CEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECGGGS
T ss_pred             CeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEEChHhc
Confidence            5689999999988 889999999999999999999999999999999999999987679999999999999999976543
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Back     alignment and structure
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Back     alignment and structure
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Back     alignment and structure
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 452
d1cyoa_88 d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta 3e-06
d1euea_86 d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic 3e-05
d1cxya_81 d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira 8e-05
d1kbia297 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal 3e-04
d1mj4a_80 d.120.1.1 (A:) Sulfite oxidase, N-terminal domain 3e-04
d1soxa291 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom 0.001
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 27  SNTIKYFKNGDITEQLIKTHHSPS----AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNG 82
           S  +KY+     T + I+ H++         + V   +++ KFL+ HPGG   ++    G
Sbjct: 1   SKAVKYY-----TLEEIQKHNNSKSTWLILHYKV---YDLTKFLEEHPGGEEVLREQAGG 52

Query: 83  DITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
           D TE      HS  A EL K + + + +P +
Sbjct: 53  DATENFEDVGHSTDARELSKTFIIGELHPDD 83
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81 Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query452
d1cyoa_88 Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} 99.69
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 99.67
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 99.67
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 99.58
d1mj4a_80 Sulfite oxidase, N-terminal domain {Human (Homo sa 99.57
d1kbia297 Flavocytochrome b2, N-terminal domain {Baker's yea 99.56
d1cyoa_88 Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 99.53
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 99.5
d1kbia297 Flavocytochrome b2, N-terminal domain {Baker's yea 99.48
d1mj4a_80 Sulfite oxidase, N-terminal domain {Human (Homo sa 99.44
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 99.42
d1t0ga_109 Putative steroid binding protein AT2G24940 {Thale 95.97
d1t0ga_109 Putative steroid binding protein AT2G24940 {Thale 94.02
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=9.2e-19  Score=142.01  Aligned_cols=79  Identities=28%  Similarity=0.392  Sum_probs=73.6

Q ss_pred             CccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcc
Q psy2044          36 GDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEY  114 (452)
Q Consensus        36 kDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~  114 (452)
                      |.+|.+|+++|++ ++||+++.++|||||+|++.||||.++|+.++|+|+|+.|....|+..++++|++|+||.|.+++.
T Consensus         5 k~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs~~a~~~l~~~~IG~l~~~~~   84 (88)
T d1cyoa_           5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR   84 (88)
T ss_dssp             CEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECGGGG
T ss_pred             ccccHHHHHhhCCCCCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCCHHHHHHHHcCccEEECcccc
Confidence            5689999999988 889999999999999999999999999999999999999987779999999999999999986543
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure