Psyllid ID: psy2056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MLSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPMV
Secondary Structure (PSIPRED)
cccHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccEEEHHHEEEccccccc
Coil and Loop (DISEMBL)
MLSYVISAFVCynskifskGNVFSTLIKYLMWFGVRLLLILIWpltrirslsyrhkplppitnqLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWpltrirslsyrhkplppitnqLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSveeigrdtpllgvpltvkesvavkvpapmv
Flexible Loop (DISEMBL)
MLSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITrirqvnpmlNAVVDERFNLALEEAKQVDILLAASTksveeigrdtpllgvpltvkesvavkvpapmv
Low Complexity Region (SEG)
MLSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPMV
Disordered region (IsUnstruct)
**SYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKE***********
Disordered Region (DISOPRED)
**SYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYR*********************LIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRI****************LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPM*
Disordered Region (DISEMBL)
MLSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPMV
Disordered Region (DISPRO)
*LSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSYVISAFVCYNSKIFSKGNVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q6DH69	532	Fatty-acid amide hydrolas	yes	N/A	0.540	0.223	0.467	1e-20
Q05AM4	526	Fatty-acid amide hydrolas	no	N/A	0.459	0.192	0.485	8e-18
Q6GMR7	532	Fatty-acid amide hydrolas	yes	N/A	0.413	0.171	0.472	2e-16
P59385	524	Indoleacetamide hydrolase	yes	N/A	0.345	0.145	0.433	8e-07
Q83GA1	524	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.381	0.160	0.333	6e-06
Q83HX2	524	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.381	0.160	0.333	6e-06
Q49091	492	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.354	0.158	0.325	2e-05
B0K3S3	488	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.313	0.141	0.296	3e-05
B2V855	485	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.381	0.173	0.340	5e-05
B0KBN4	488	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.313	0.141	0.283	6e-05

>sp|Q6DH69|FAH2A_DANRE Fatty-acid amide hydrolase 2-A OS=Danio rerio GN=faah2a PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 84/124 (67%), Gaps = 5/124 (4%)

Query: 96  RLLLILIWPLT---RIRSLSYRHK--PLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEA 150
           RLL  ++W L    ++ +   RH    LPPITN LLL SA + A  IR K+V+ V+VV+A
Sbjct: 12  RLLRAVVWILFAAFKLFAPQQRHGVSRLPPITNPLLLLSAMQLARKIRRKEVTSVEVVQA 71

Query: 151 FITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKES 210
           +I RI++VNP++NA+V +RF+ AL+EA QVD L+   T   + +    PLLGVP+TVKE+
Sbjct: 72  YIDRIQEVNPLINAMVKDRFSAALQEAAQVDKLIEEETGGEDVLEDRLPLLGVPITVKEA 131

Query: 211 VAVK 214
            A++
Sbjct: 132 FALQ 135

Danio rerio (taxid: 7955)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 9

>sp|Q05AM4|FAH2B_DANRE Fatty-acid amide hydrolase 2-B OS=Danio rerio GN=faah2b PE=2 SV=1

 Score = 90.5 bits (223), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%)

Query: 114 RHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLA 173
           R K LPPITN LL  SA + A  IR  +VS V+VV+A+I RI++VNP+LNA++ +RF+ A
Sbjct: 34  RPKHLPPITNPLLTLSAVQLAEKIRRGEVSSVEVVQAYIDRIQEVNPLLNALIKDRFSAA 93

Query: 174 LEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
           L EA + D L+       E +    PLLGVP++VKES  ++
Sbjct: 94  LLEAARADKLIKEENGGEEVLRNQFPLLGVPMSVKESFGLQ 134

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 9

>sp|Q6GMR7|FAAH2_HUMAN Fatty-acid amide hydrolase 2 OS=Homo sapiens GN=FAAH2 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query: 120 PITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQ 179
           P+T  LLL S  + A LIR ++V C+ VV+A+I RI+ VNPM+N +V  RF  A++EA  
Sbjct: 43  PVTEPLLLLSGMQLAKLIRQRKVKCIDVVQAYINRIKDVNPMINGIVKYRFEEAMKEAHA 102

Query: 180 VDILLAASTKSVEEIGRDTPLLGVPLTVKES 210
           VD  LA   +    +    P LGVPLTVKE+
Sbjct: 103 VDQKLAEKQEDEATLENKWPFLGVPLTVKEA 133

Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes monounsaturated substrate anandamide preferentially as compared to polyunsaturated substrates.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 9

>sp|P59385|HYIN_BRAJA Indoleacetamide hydrolase OS=Bradyrhizobium japonicum (strain USDA 110) GN=bam PE=3 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           SA  TA  IR+  +S V+ VEA + R+R VNP LNAVV +    AL+ A   D   A   
Sbjct: 61  SAVDTAAAIRSGAISAVETVEAHLDRMRAVNPRLNAVVVDLSKEALKAAHAADKQRAKGG 120

Query: 189 KSVEEIGRDTPLLGVPLTVKESV 211
               E+G    L GVP+T+KE+V
Sbjct: 121 ----ELGL---LHGVPITIKENV 136

Hydrolyzes indole-3-acetamide (IAM) into indole-3-acetic acid (IAA).

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q83GA1|GATA_TROWT Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain Twist) GN=gatA PE=3 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 119 PPITNQLLLNS--AQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEE 176
           PP   +++L+   A + A LIR+K+VS ++V E+FI  I   +  + A +   F+   + 
Sbjct: 25  PPFQGRIVLSEMPAHRLAALIRSKEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDV 84

Query: 177 AKQVDILLAASTKSVEEIGRDTPLLGVPLTVKE 209
           A++VD  L ++TK        +PL GVP+ VK+
Sbjct: 85  ARRVDEELKSATKL-------SPLAGVPIAVKD 110

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Tropheryma whipplei (strain Twist) (taxid: 203267)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q83HX2|GATA_TROW8 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain TW08/27) GN=gatA PE=3 SV=2

 Score = 50.8 bits (120), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 119 PPITNQLLLNS--AQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEE 176
           PP   +++L+   A + A LIR+K+VS ++V E+FI  I   +  + A +   F+   + 
Sbjct: 25  PPFQGRIVLSEMPAHRLAALIRSKEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDV 84

Query: 177 AKQVDILLAASTKSVEEIGRDTPLLGVPLTVKE 209
           A++VD  L ++TK        +PL GVP+ VK+
Sbjct: 85  ARRVDEELKSATKL-------SPLAGVPIAVKD 110

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Tropheryma whipplei (strain TW08/27) (taxid: 218496)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q49091|GATA_MORCA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S  + A  ++ KQ S  ++VE F  RI +++  +N+ + + F+ AL +AK  D L A   
Sbjct: 8   SVHELADGLKNKQFSSHELVEHFANRINRLDGQINSFITKDFDNALAQAKLADKLRAK-- 65

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                 G + PLLGVP+  K+++  K
Sbjct: 66  ------GDNRPLLGVPMAHKDNLCTK 85

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Moraxella catarrhalis (taxid: 480)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 52/81 (64%), Gaps = 12/81 (14%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEI- 194
           L++ ++VS ++V ++++ RI++V P ++A+V    + AL++AK+ D          E+I 
Sbjct: 14  LLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEAD----------EKIK 63

Query: 195 -GRDTPLLGVPLTVKESVAVK 214
            G DT L G+P+ +K++++ +
Sbjct: 64  KGEDTALTGIPVIIKDNISTE 84

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B2V855|GATA_SULSY Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 7/91 (7%)

Query: 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDIL 183
           +L   S ++ + L+++K+V   ++VEAFI R  QV P + A V    +LALE+AK+ D  
Sbjct: 2   ELWKKSLKELSDLVKSKEVKPSEIVEAFIERKNQVEPKIKAYVTALDDLALEKAKKRDQE 61

Query: 184 LAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
           L      +E I     L G+P+ +K++++ K
Sbjct: 62  LT----KLENI---PDLFGLPIAIKDNISTK 85

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Sulfurihydrogenibium sp. (strain YO3AOP1) (taxid: 436114)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B0KBN4|GATA_THEP3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 51/81 (62%), Gaps = 12/81 (14%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEI- 194
           L++ ++VS ++V ++++ RI++V P ++A++    + AL+ AK+ D          E+I 
Sbjct: 14  LLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQRAKEAD----------EKIK 63

Query: 195 -GRDTPLLGVPLTVKESVAVK 214
            G DT L G+P+ +K++++ +
Sbjct: 64  NGEDTALTGIPVIIKDNISTE 84

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
350424271	508	PREDICTED: fatty-acid amide hydrolase 2-	0.609	0.263	0.453	4e-24
357622782	527	hypothetical protein KGM_07427 [Danaus p	0.55	0.229	0.467	1e-23
340722805	525	PREDICTED: fatty-acid amide hydrolase 2-	0.609	0.255	0.459	2e-23
158287258	537	AGAP011315-PA [Anopheles gambiae str. PE	0.654	0.268	0.409	3e-22
383864475	542	PREDICTED: fatty-acid amide hydrolase 2-	0.663	0.269	0.433	4e-22
427791473	452	Putative amidase, partial [Rhipicephalus	0.604	0.294	0.428	1e-21
195158928	530	GL13563 [Drosophila persimilis] gi|19411	0.531	0.220	0.458	2e-21
194744169	528	GF16679 [Drosophila ananassae] gi|190627	0.531	0.221	0.458	2e-21
170030527	551	amidase [Culex quinquefasciatus] gi|1678	0.581	0.232	0.453	2e-21
195060664	528	GH14157 [Drosophila grimshawi] gi|193891	0.531	0.221	0.45	3e-21

>gi|350424271|ref|XP_003493741.1| PREDICTED: fatty-acid amide hydrolase 2-like [Bombus impatiens]

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 96/139 (69%), Gaps = 5/139 (3%)

Query: 82  VFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQ 141
           V   L+KYL++    +L  ++ P+ +++    R K +P I NQLLL SA + A  IR K 
Sbjct: 7   VIQRLLKYLVF----MLSCIVTPILKLQYFKKR-KRIPAIKNQLLLISATEIARQIRKKM 61

Query: 142 VSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLL 201
           +S  +VV A++ R R VNP++NA+V+ RF+ A++EA++VD LLA++TK+ EE+ R+TP L
Sbjct: 62  ISSEEVVRAYVERCRDVNPVINAIVESRFSAAIQEAQEVDKLLASTTKTEEELARETPFL 121

Query: 202 GVPLTVKESVAVKVPAPMV 220
           GVP+TVKES AV+  + M 
Sbjct: 122 GVPITVKESFAVEGMSHMA 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622782|gb|EHJ74177.1| hypothetical protein KGM_07427 [Danaus plexippus]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 91/122 (74%), Gaps = 1/122 (0%)

Query: 93  FGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFI 152
           F V LL I + P T I ++  R++  PP TN +L  SA   A++IRTKQ++  +VV+++I
Sbjct: 7   FLVSLLAIFVLPTTYIVNIK-RNRKCPPPTNPILYKSATTLAMMIRTKQITSEEVVKSYI 65

Query: 153 TRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVA 212
            R ++VNP LNA+V+ R++LAL+EAK +D ++A++ ++ E++ ++ PLLGVPLTVKES+A
Sbjct: 66  ERCKEVNPYLNAIVEPRYDLALKEAKCIDKMIASNDRTPEDLAKEHPLLGVPLTVKESIA 125

Query: 213 VK 214
           V+
Sbjct: 126 VE 127

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722805|ref|XP_003399792.1| PREDICTED: fatty-acid amide hydrolase 2-like [Bombus terrestris]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 86  LIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCV 145
           +I+ LM   + +L  ++ P  +++    R K +P I NQLLL SA + A  IR K +S  
Sbjct: 7   MIQKLMKCVIFMLSCIVTPFLKLQYFKKR-KRIPAIKNQLLLISATEIARQIRKKVISSE 65

Query: 146 KVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPL 205
           +VV A++ R   VNP++NA+VD RFN A++EA++VD LLA++TK+ EE+  +TP LGVP+
Sbjct: 66  EVVRAYVERCTDVNPVINAIVDSRFNAAIQEAQEVDKLLASTTKTEEELAHETPFLGVPI 125

Query: 206 TVKESVAVKVPAPMV 220
           TVKES AV+  + MV
Sbjct: 126 TVKESFAVEGMSYMV 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287258|ref|XP_309335.4| AGAP011315-PA [Anopheles gambiae str. PEST] gi|157019565|gb|EAA05257.5| AGAP011315-PA [Anopheles gambiae str. PEST]

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 101/149 (67%), Gaps = 5/149 (3%)

Query: 67  LNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRH-KPLPPITNQL 125
           +++  K  LL R K    +L+K ++  G + L++L+  L+R  ++   H K +PPITN +
Sbjct: 1   MDAQTKQNLLERRKA--RSLLKTVINVGHKFLVLLVRWLSR--TIYGEHGKRMPPITNLI 56

Query: 126 LLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLA 185
           L+ SA   A  IRT++++ V+V +AFI R R+VNP+LN VVDERF  AL++A++ D L+A
Sbjct: 57  LMESATSLATKIRTRKLTSVEVTQAFIDRCREVNPLLNCVVDERFEAALKDAERADKLIA 116

Query: 186 ASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
           + T +VE++ R+ P LGVP++ K+ + V+
Sbjct: 117 SGTMTVEQLEREKPFLGVPISTKDCIRVE 145

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864475|ref|XP_003707704.1| PREDICTED: fatty-acid amide hydrolase 2-like [Megachile rotundata]

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 11/157 (7%)

Query: 58  LPPITNQLLLNSAQKTALLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKP 117
           LP I  +L+ N+ + T +LI  +     ++K L++    LL  +I P T ++  + R K 
Sbjct: 8   LPMIHLKLMANTME-TMILITQR-----ILKALLF----LLSCVIIPFTLLQCFNER-KR 56

Query: 118 LPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEA 177
           LPPI + +L  SA + A  IR++++S  +VV A+I R + VNP+LNA+V+ RF+ A  EA
Sbjct: 57  LPPIKSNVLFLSATELAKRIRSRKISSEEVVRAYIQRCKDVNPILNAIVESRFDAATLEA 116

Query: 178 KQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
           K+VD  L+ +TK+ EE+ RD PLLGVP+TVKES+AV+
Sbjct: 117 KEVDQFLSRTTKTEEELARDMPLLGVPVTVKESIAVQ 153

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427791473|gb|JAA61188.1| Putative amidase, partial [Rhipicephalus pulchellus]

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 7/140 (5%)

Query: 75  LLIRTKQVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTA 134
           +L   +++   L  YL W   RL+  L W   + R       P+PP+T++LLL SA   A
Sbjct: 26  ILGSCRELLLELAVYLWWTATRLVFALWWFWKKPR-------PVPPVTDKLLLRSAISLA 78

Query: 135 LLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEI 194
             IR  +V  V VV A+I RIR+V P+LNAVV+ERF  AL++A++VD L+A+ T S  ++
Sbjct: 79  ADIRNGKVKSVDVVSAYIKRIREVQPILNAVVEERFEEALKDAEEVDRLVASGTMSPSQM 138

Query: 195 GRDTPLLGVPLTVKESVAVK 214
             + PLLG+P T K S+A+K
Sbjct: 139 SEEKPLLGLPFTSKNSIAIK 158

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195158928|ref|XP_002020335.1| GL13563 [Drosophila persimilis] gi|194117104|gb|EDW39147.1| GL13563 [Drosophila persimilis]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 98  LLILIW---PLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITR 154
           +++  W   P +R  ++    + LPPI + LL   A   A LIRT+++   +VVEA+I R
Sbjct: 9   MIVFSWFVVPYSRYTNIKVIRRKLPPIRSHLLEIPAVDLAKLIRTRKIKSEEVVEAYIER 68

Query: 155 IRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
            RQVNP++NA+V +RF  ALEEA+++D ++A    SVE +   TPLLG+P+TVKES+AVK
Sbjct: 69  CRQVNPLINAIVQDRFEEALEEAREIDNVIAMGINSVESMEEHTPLLGIPVTVKESIAVK 128

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194744169|ref|XP_001954567.1| GF16679 [Drosophila ananassae] gi|190627604|gb|EDV43128.1| GF16679 [Drosophila ananassae]

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 98  LLILIW---PLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITR 154
           +++  W   P +R  ++    + LPPI + LL   A   A LIRT+++   +VVEA+I R
Sbjct: 9   MIVFSWFVVPYSRYTNIKVIRRKLPPIRSHLLEIPAVDLAKLIRTRKIKSEEVVEAYIER 68

Query: 155 IRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
            RQVNP++NA+V +RF  ALEEA+++D ++A    SVE +   TPLLG+P+TVKES+AVK
Sbjct: 69  CRQVNPLINAIVQDRFEEALEEAREIDKVIAMGINSVESMEEHTPLLGIPVTVKESIAVK 128

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030527|ref|XP_001843140.1| amidase [Culex quinquefasciatus] gi|167867381|gb|EDS30764.1| amidase [Culex quinquefasciatus]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 82/128 (64%)

Query: 87  IKYLMWFGVRLLLILIWPLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVK 146
           I+ L+   + L  + + P     S   RHK LP I N LL   A   A  IRT Q+    
Sbjct: 35  IRRLLRGAMHLFSLFVVPYAWAVSARIRHKKLPAIENPLLQIPAVTLAAKIRTGQLKSED 94

Query: 147 VVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLT 206
           VV A+I R RQVNP+LNA+V++RF  ALE+A+++D  +A   KS E++ R+TP+LGVP+T
Sbjct: 95  VVGAYIERCRQVNPILNAIVEDRFEQALEDARRIDREVAQGLKSAEQMARETPILGVPIT 154

Query: 207 VKESVAVK 214
           +KES+AV+
Sbjct: 155 IKESLAVQ 162

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195060664|ref|XP_001995834.1| GH14157 [Drosophila grimshawi] gi|193891626|gb|EDV90492.1| GH14157 [Drosophila grimshawi]

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 98  LLILIW---PLTRIRSLSYRHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITR 154
           +++  W   P +R  ++    + LPPI + LL   A   A LIRT+++   +VVEA+I R
Sbjct: 9   MIVFSWFVVPYSRYTNIKVIRRKLPPIRSHLLEIPAVDLAKLIRTRKIKSEEVVEAYIER 68

Query: 155 IRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
            RQVNP++NA+V +RF  ALEEA+++D ++A    S+E +   TPLLG+P+TVKES+AVK
Sbjct: 69  CRQVNPLINAIVQDRFEEALEEAREIDNVIAMGINSIESMEEHTPLLGIPVTVKESIAVK 128

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
FB|FBgn0038803	552	CG5191 [Drosophila melanogaste	0.645	0.257	0.410	1.7e-23
ZFIN|ZDB-GENE-040718-453	532	faah2a "fatty acid amide hydro	0.581	0.240	0.455	6.5e-21
FB|FBgn0033717	529	CG8839 [Drosophila melanogaste	0.440	0.183	0.484	4.7e-20
ZFIN|ZDB-GENE-061027-358	526	faah2b "fatty acid amide hydro	0.459	0.192	0.485	2.4e-17
FB|FBgn0037548	536	CG7900 [Drosophila melanogaste	0.581	0.238	0.357	4e-16
UNIPROTKB|Q6GMR7	532	FAAH2 "Fatty-acid amide hydrol	0.413	0.171	0.472	1.4e-15
FB|FBgn0037547	530	CG7910 [Drosophila melanogaste	0.459	0.190	0.394	1.2e-13
WB|WBGene00013164	535	Y53F4B.18 [Caenorhabditis eleg	0.622	0.256	0.328	1.1e-11
FB|FBgn0039341	523	CG5112 [Drosophila melanogaste	0.577	0.242	0.350	9.6e-08

FB|FBgn0038803 CG5191 [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 60/146 (41%), Positives = 95/146 (65%)

Query:    73 TALLIRTKQVFSTLIKYLMWFGVRLLLILI-W---PLTRIRSLSYRHKPLPPITNQLLLN 128
             T + +  ++++  ++ Y+M   +R  +I+  W   P +R  ++    + LPPI + LL  
Sbjct:     7 TVIRLHLEELWLRILGYIMRRFLRSAMIVFSWFVVPYSRYTNIKVIRRKLPPIRSHLLEI 66

Query:   129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
              A   A LIRT+++   +VVEA+I R RQVNP++NA+V +RF  ALEEA+++D ++A   
Sbjct:    67 PAVDLAKLIRTRKIKSEEVVEAYIERCRQVNPLINAIVQDRFEEALEEAREIDNVIAMGI 126

Query:   189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
              SVE +   TPLLG+P+TVKES+AVK
Sbjct:   127 NSVESMEELTPLLGIPVTVKESIAVK 152

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS

ZFIN|ZDB-GENE-040718-453 faah2a "fatty acid amide hydrolase 2a" [Danio rerio (taxid:7955)]

 Score = 253 (94.1 bits), Expect = 6.5e-21, P = 6.5e-21
 Identities = 61/134 (45%), Positives = 87/134 (64%)

Query:    86 LIKYLMWFGVRLLLILIWPLTRIRSL---SYRH--KPLPPITNQLLLNSAQKTALLIRTK 140
             L ++  + G RLL  ++W L     L     RH    LPPITN LLL SA + A  IR K
Sbjct:     3 LTRFERFLG-RLLRAVVWILFAAFKLFAPQQRHGVSRLPPITNPLLLLSAMQLARKIRRK 61

Query:   141 QVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL 200
             +V+ V+VV+A+I RI++VNP++NA+V +RF+ AL+EA QVD L+   T   + +    PL
Sbjct:    62 EVTSVEVVQAYIDRIQEVNPLINAMVKDRFSAALQEAAQVDKLIEEETGGEDVLEDRLPL 121

Query:   201 LGVPLTVKESVAVK 214
             LGVP+TVKE+ A++
Sbjct:   122 LGVPITVKEAFALQ 135

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0033717 CG8839 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 4.7e-20, P = 4.7e-20
 Identities = 47/97 (48%), Positives = 72/97 (74%)

Query:   118 LPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEA 177
             +PPIT+ +LL SA   A  IR +++S V+V+E+FI RI++VNP+LN VVDER++ AL+EA
Sbjct:    38 VPPITDAILLESATSLARKIRKQELSSVQVLESFIRRIKEVNPILNCVVDERYDQALKEA 97

Query:   178 KQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
              + D L+ +   S EE+ ++ P LGVP+T K+ ++VK
Sbjct:    98 AEADALIKSGQYSTEELEKEKPFLGVPITTKDCISVK 134

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-061027-358 faah2b "fatty acid amide hydrolase 2b" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 49/101 (48%), Positives = 68/101 (67%)

Query:   114 RHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLA 173
             R K LPPITN LL  SA + A  IR  +VS V+VV+A+I RI++VNP+LNA++ +RF+ A
Sbjct:    34 RPKHLPPITNPLLTLSAVQLAEKIRRGEVSSVEVVQAYIDRIQEVNPLLNALIKDRFSAA 93

Query:   174 LEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
             L EA + D L+       E +    PLLGVP++VKES  ++
Sbjct:    94 LLEAARADKLIKEENGGEEVLRNQFPLLGVPMSVKESFGLQ 134

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0037548 CG7900 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 50/140 (35%), Positives = 88/140 (62%)

Query:    81 QVFSTLIKYLMWFGVRLLLILIWPLTRIRSLSYRHKP----LPPITNQLLLNSAQKTALL 136
             ++F  LI  L    V+++ +++ PL  + +  YR K     +PPI ++LL  S Q+    
Sbjct:     2 EIFLRLIVIL----VKVIALIVSPL--LEAFVYRPKSKRTLIPPIRSRLLTLSVQELRRR 55

Query:   137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAA--STKSVEEI 194
             ++++Q++ V++V  +I RI  VN  LNA+++ RF  ALEEA + D L+A+  +   VE++
Sbjct:    56 LQSRQLTSVELVRTYIERIEAVNKHLNALIESRFTAALEEATETDDLIASCQTAAEVEKL 115

Query:   195 GRDTPLLGVPLTVKESVAVK 214
               + PLLG+P+T+KES A++
Sbjct:   116 FEERPLLGLPVTIKESCALE 135

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

UNIPROTKB|Q6GMR7 FAAH2 "Fatty-acid amide hydrolase 2" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query:   120 PITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQ 179
             P+T  LLL S  + A LIR ++V C+ VV+A+I RI+ VNPM+N +V  RF  A++EA  
Sbjct:    43 PVTEPLLLLSGMQLAKLIRQRKVKCIDVVQAYINRIKDVNPMINGIVKYRFEEAMKEAHA 102

Query:   180 VDILLAASTKSVEEIGRDTPLLGVPLTVKES 210
             VD  LA   +    +    P LGVPLTVKE+
Sbjct:   103 VDQKLAEKQEDEATLENKWPFLGVPLTVKEA 133

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0037547 CG7910 [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query:   114 RHKP-LPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNL 172
             R KP    I N LL  S  +    +R  +++ V++V A+I R+++VNP LNAVV++RF  
Sbjct:    29 RQKPKFSGIRNPLLKKSVVELVTQLRRGEITSVELVSAYIARVQEVNPSLNAVVEDRFEA 88

Query:   173 ALEEAKQVDILLAASTKSVEEIGRDT--PLLGVPLTVKESVAVK 214
             AL++AK  D  +  ++   + +   T  P+LGVP TVKES  +K
Sbjct:    89 ALQDAKLADQFIEKASSEFDRVALYTKYPILGVPFTVKESCGLK 132

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

WB|WBGene00013164 Y53F4B.18 [Caenorhabditis elegans (taxid:6239)]

 Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 47/143 (32%), Positives = 78/143 (54%)

Query:    74 ALLIRTKQVFSTLIKYLMWFGVRLLLILIWPL-TRIRSLSYRHKPLPPITNQLLLNSAQK 132
             A+  R K+ F  L+  +       +  + W + T  R   Y    + P T++LLL SA +
Sbjct:     2 AVPYRLKKAFLNLLLTISAAYFYTIRFVFWLVNTFFRERVY----VTPPTDRLLLISATQ 57

Query:   133 TALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLA-ASTKSV 191
                +I  K++S   +VE++I RI QVN  +NAVV + F  A E+A +VD  +A A    +
Sbjct:    58 AVQMISQKEISSTALVESYIHRIEQVNNTINAVVVKLFESAREQANEVDSFIALADEDDI 117

Query:   192 EEIGRDTPLLGVPLTVKESVAVK 214
             ++   + PL GVP T+K+++ V+
Sbjct:   118 KKKLEEKPLYGVPFTMKDALEVE 140

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0039341 CG5112 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 9.6e-08, P = 9.6e-08
 Identities = 47/134 (35%), Positives = 69/134 (51%)

Query:    82 VFSTLIKYLMWFGVRLL-LILIWPLTRIRSLSYRHKPLPPITNQLLLN-SAQKTALLIRT 139
             V   L+  +     RLL  +L W L   + +S    P P +  Q  +  SA + A  IR 
Sbjct:     7 VLDALLALVHILSDRLLEFVLDWYLGEHKRVS---GP-PSLEQQTTITKSAVELAQQIRE 62

Query:   140 KQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTP 199
             ++     +V+A+  RI  VN  LNAVVD  F  AL++A+++D  L     S E++ R  P
Sbjct:    63 RRQRSYDIVKAYCERIESVNRDLNAVVDGPFPEALDQAREIDRKLDEKEYSDEDLRR-LP 121

Query:   200 LLGVPLTVKESVAV 213
              LGVP + K+S AV
Sbjct:   122 FLGVPFSTKDSTAV 135


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.43    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  138 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  19.02u 0.09s 19.11t   Elapsed:  00:00:05
  Total cpu time:  19.02u 0.09s 19.11t   Elapsed:  00:00:06
  Start:  Thu Aug 15 14:11:16 2013   End:  Thu Aug 15 14:11:22 2013

GO:0017064 "fatty acid amide hydrolase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	220
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	4e-16
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	4e-12
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	2e-11
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	2e-10
pfam01425	431	pfam01425, Amidase, Amidase	1e-09
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	1e-09
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	8e-09
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	4e-08
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	6e-07
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	6e-07
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	2e-06
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	5e-06
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	1e-05
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	3e-05
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	0.002

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           SA + A  +R++ VS  +  EA + R+  VNP +NAVVD R   AL +A  VD   A   
Sbjct: 9   SAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARG- 67

Query: 189 KSVEEIGRDTPLLGVPLTVKESV 211
              ++ G   PL GVP+TVK +V
Sbjct: 68  ---DDPG---PLAGVPVTVKVNV 84

Length = 469

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 9/92 (9%)

Query: 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVV--DERFNLALEEAKQVDI 182
           L   +A + A L+R K++S V++VEA++ RI  +NP LNA V  D    LAL EA   D 
Sbjct: 4   LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADA 63

Query: 183 LLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
            LAA     E +G   PL GVP+ VK+++   
Sbjct: 64  RLAAG----EPLG---PLAGVPIAVKDNIDTA 88

Length = 475

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
            A + A  +   +VS V++ +  I RI + +  +NA+V   F+ A   A+  D   A   
Sbjct: 13  PATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARAR-- 70

Query: 189 KSVEEIGRDTPLLGVPLTVKES 210
                 G   PLLG+P+TVKES
Sbjct: 71  ------GERGPLLGIPVTVKES 86

Length = 490

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR 196
           ++ K++S V++ +A++ RI +V+P LNA +      AL +AK  D  LAA        G 
Sbjct: 1   LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAA--------GE 52

Query: 197 DTPLLGVPLTVKESVAVK 214
             PL G+P+ +K+++  K
Sbjct: 53  AGPLAGIPIAIKDNICTK 70

Length = 459

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 147 VVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLT 206
           +VEA++ R    NP LNA V   F  AL +AK  D   A   K         PL GVP++
Sbjct: 2   LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG--------PLHGVPIS 53

Query: 207 VKESVAVK 214
           +K+++ VK
Sbjct: 54  LKDNIDVK 61

Length = 431

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 117 PLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLAL-E 175
           P  P  + ++  SA   +  IR +QVSCV+V+ A++  I +VNP +NA+V  R   AL  
Sbjct: 1   PASPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLA 60

Query: 176 EAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
           EA + D  LA      E  G    L G+P   K+    K
Sbjct: 61  EAAEKDAALARG----EYRG---WLHGMPQAPKDLAPTK 92

Length = 484

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 13/80 (16%)

Query: 130 AQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK 189
           A   A  ++  QV+ +++V   I + +++NP LNA+V ER+  ALEEAKQ D        
Sbjct: 6   ATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS------ 59

Query: 190 SVEEIGRDTPLLGVPLTVKE 209
                    P  GVP+ +K+
Sbjct: 60  -------GKPFAGVPIFLKD 72

Length = 482

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR 196
           IR  +VS  +VVEA I R   VNP LNA+    F+ A + A +                +
Sbjct: 24  IRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPG-------------SQ 70

Query: 197 DTPLLGVPLTVKESVAVK 214
                GVP  +K++V V 
Sbjct: 71  GGFFSGVPTFIKDNVDVA 88

Length = 468

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S  + A  +R+ ++SC+++VEA + R   + P LNA        AL  A+++D   AA  
Sbjct: 12  SLTEAAAALRSGRLSCLELVEALLARAAALAP-LNAFTTVDAEGALAAARRIDAQRAA-- 68

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAV 213
                 G    L GVP+ +K+++  
Sbjct: 69  ------GAALLLAGVPIVIKDNINT 87

Length = 472

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 15/84 (17%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNA---VVDERFNLALEEAKQVDILLA 185
           SA + A  +R  ++S   V +A + RI + NP LNA   V  ER   AL EA ++D   A
Sbjct: 8   SAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAER---ALAEAARIDAARA 64

Query: 186 ASTKSVEEIGRDT-PLLGVPLTVK 208
           A        G    PL GVP  VK
Sbjct: 65  A--------GEPLGPLAGVPFAVK 80

Length = 465

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDI 182
             L    A   A ++   +++   ++E ++ RI +++  L A     F+ A  EA+    
Sbjct: 4   TDLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQ 63

Query: 183 LLAASTKSVEEIGRDTPLLGVPLTVKESVAV 213
            L A        G   PLLGVP+ +K+ V V
Sbjct: 64  RLDA--------GERLPLLGVPIAIKDDVDV 86

Length = 462

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 114 RHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLA 173
            +  LP +T+Q         A  + +  V+ V++V   + RI    P LNA    R   A
Sbjct: 13  GNDRLPGLTDQ---------AYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAA 63

Query: 174 LEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAV 213
           L EA + D   AA        G   PLLGVP+ VK+ V V
Sbjct: 64  LAEAAEADRRRAA--------GDRLPLLGVPIAVKDDVDV 95

Length = 483

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S  + A  IR+ +VS   V EA + RI Q +  LNA        AL +A ++D  LAA  
Sbjct: 1   SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAA-- 58

Query: 189 KSVEEIGRDTPLL-GVPLTVK 208
                 G     L GVP  VK
Sbjct: 59  ------GSPLGPLAGVPFAVK 73

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)

Query: 138 RTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK---SVEEI 194
           R + +S V+V EA +  I +  P LNA+       A   A+       AST      E +
Sbjct: 17  RARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAAR-------ASTARWAKGEPL 69

Query: 195 GRDTPLLGVPLTVKESVAVK-VPAP 218
           G   PL GVP+T+KE++A + VP P
Sbjct: 70  G---PLDGVPVTIKENIATRGVPVP 91

Length = 464

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 12/79 (15%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
           L++ K++S  +V+EA + RI      +NA ++     AL++AK++D          + I 
Sbjct: 4   LLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLD----------KAI- 52

Query: 196 RDTPLLGVPLTVKESVAVK 214
             TPL G+P+ VK++++ K
Sbjct: 53  -LTPLAGIPIAVKDNISTK 70

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PRK09201	465	amidase; Provisional	99.66
PRK07487	469	amidase; Provisional	99.65
PRK07042	464	amidase; Provisional	99.64
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	99.64
PRK06169	466	putative amidase; Provisional	99.64
PRK06170	490	amidase; Provisional	99.63
PRK07486	484	amidase; Provisional	99.62
PRK08137	497	amidase; Provisional	99.61
PRK07056	454	amidase; Provisional	99.59
PRK06102	452	hypothetical protein; Provisional	99.59
PRK06061	483	amidase; Provisional	99.59
PRK12470	462	amidase; Provisional	99.58
KOG1212|consensus	560		99.57
PRK07869	468	amidase; Provisional	99.54
PRK06828	491	amidase; Provisional	99.54
PRK07488	472	indole acetimide hydrolase; Validated	99.54
PRK06707	536	amidase; Provisional	99.51
PRK06565	566	amidase; Validated	99.5
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	99.48
PRK06529	482	amidase; Provisional	99.48
PRK11910	615	amidase; Provisional	99.47
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.46
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	99.45
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	99.39
PRK08186	600	allophanate hydrolase; Provisional	99.38
PRK05962	424	amidase; Validated	99.17
PRK07235	502	amidase; Provisional	98.89
KOG1211|consensus	506		98.36

>PRK09201 amidase; Provisional

Probab=99.66  E-value=4.4e-16  Score=147.23  Aligned_cols=84  Identities=36%  Similarity=0.390  Sum_probs=78.4

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056         125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP  204 (220)
Q Consensus       125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP  204 (220)
                      +..+++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|+++++|..       .|||+|||
T Consensus         4 ~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvP   76 (465)
T PRK09201          4 LSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEP-------LGPLAGVP   76 (465)
T ss_pred             cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCce
Confidence            55679999999999999999999999999999999999999999999999999999998887753       69999999


Q ss_pred             eeeeecccccC
Q psy2056         205 LTVKESVAVKV  215 (220)
Q Consensus       205 ftIKDnIdVk~  215 (220)
                      |+|||||+++.
T Consensus        77 i~vKD~~~v~G   87 (465)
T PRK09201         77 FAVKNLFDVAG   87 (465)
T ss_pred             EEEEeccccCC
Confidence            99999999984

>PRK07487 amidase; Provisional

Probab=99.65  E-value=6.2e-16  Score=146.35  Aligned_cols=85  Identities=40%  Similarity=0.479  Sum_probs=78.9

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      ++...++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|+++++|..       .+||+||
T Consensus         4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~-------~gpL~Gv   76 (469)
T PRK07487          4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD-------PGPLAGV   76 (469)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCC-------CCCcCCC
Confidence            356779999999999999999999999999999999999999999999999999999998877753       6899999


Q ss_pred             eeeeeecccccC
Q psy2056         204 PLTVKESVAVKV  215 (220)
Q Consensus       204 PftIKDnIdVk~  215 (220)
                      ||+|||+|+|+.
T Consensus        77 Pi~vKD~~~v~G   88 (469)
T PRK07487         77 PVTVKVNVDQAG   88 (469)
T ss_pred             EEEEecccccCC
Confidence            999999999983

>PRK07042 amidase; Provisional

Probab=99.64  E-value=7e-16  Score=145.67  Aligned_cols=84  Identities=31%  Similarity=0.286  Sum_probs=78.2

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056         125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP  204 (220)
Q Consensus       125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP  204 (220)
                      +...++.++++.+++|++|++|++++|++||++.|+.+|||++.++|+|+++|++.|+++++|..       .|||+|||
T Consensus         4 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvP   76 (464)
T PRK07042          4 LHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEP-------LGPLDGVP   76 (464)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCCE
Confidence            45679999999999999999999999999999999999999999999999999999998887753       68999999


Q ss_pred             eeeeecccccC
Q psy2056         205 LTVKESVAVKV  215 (220)
Q Consensus       205 ftIKDnIdVk~  215 (220)
                      |+|||||+|+.
T Consensus        77 i~vKD~~~v~G   87 (464)
T PRK07042         77 VTIKENIATRG   87 (464)
T ss_pred             EEEEcccccCC
Confidence            99999999984

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=99.64  E-value=7.7e-16  Score=144.96  Aligned_cols=80  Identities=38%  Similarity=0.383  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeee
Q psy2056         129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVK  208 (220)
Q Consensus       129 SateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIK  208 (220)
                      |+.++++.+++|++|++|+++++++||++.|+.+||+++.++|+|+++|++.|+++++|..       .|||+||||+||
T Consensus         1 ~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPv~vK   73 (452)
T TIGR02715         1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSP-------LGPLAGVPFAVK   73 (452)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeEEEE
Confidence            5789999999999999999999999999999999999999999999999999998887753       699999999999


Q ss_pred             ecccccC
Q psy2056         209 ESVAVKV  215 (220)
Q Consensus       209 DnIdVk~  215 (220)
                      |||+++.
T Consensus        74 D~~~v~G   80 (452)
T TIGR02715        74 NLFDVAG   80 (452)
T ss_pred             eccccCC
Confidence            9999983

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK06169 putative amidase; Provisional

Probab=99.64  E-value=8.2e-16  Score=145.27  Aligned_cols=85  Identities=22%  Similarity=0.203  Sum_probs=78.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      .+...++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|+++|+++++|..       .|||+||
T Consensus         3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~Gv   75 (466)
T PRK06169          3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEP-------CGLLDGV   75 (466)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCC-------CCCcCCc
Confidence            355678999999999999999999999999999999999999999999999999999998887752       6899999


Q ss_pred             eeeeeecccccC
Q psy2056         204 PLTVKESVAVKV  215 (220)
Q Consensus       204 PftIKDnIdVk~  215 (220)
                      ||+|||||+|+.
T Consensus        76 Pi~vKD~~~v~G   87 (466)
T PRK06169         76 PVSIKDIFLTRG   87 (466)
T ss_pred             eEEEecccccCC
Confidence            999999999983

>PRK06170 amidase; Provisional

Probab=99.63  E-value=9.5e-16  Score=145.50  Aligned_cols=85  Identities=32%  Similarity=0.413  Sum_probs=79.0

Q ss_pred             ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056         123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG  202 (220)
Q Consensus       123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG  202 (220)
                      +++...|+.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|++++.|.        .|||+|
T Consensus         7 ~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~--------~gpL~G   78 (490)
T PRK06170          7 DEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGE--------RGPLLG   78 (490)
T ss_pred             chhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCC--------CCCcCC
Confidence            456778999999999999999999999999999999999999999999999999999999887763        489999


Q ss_pred             ceeeeeecccccC
Q psy2056         203 VPLTVKESVAVKV  215 (220)
Q Consensus       203 VPftIKDnIdVk~  215 (220)
                      |||+|||+|+|+.
T Consensus        79 vPv~VKD~~~v~G   91 (490)
T PRK06170         79 IPVTVKESFNVAG   91 (490)
T ss_pred             ceEEEecccccCC
Confidence            9999999999984

>PRK07486 amidase; Provisional

Probab=99.62  E-value=1.8e-15  Score=143.60  Aligned_cols=87  Identities=34%  Similarity=0.447  Sum_probs=78.4

Q ss_pred             cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeCh-hHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         122 TNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERF-NLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       122 ~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rf-E~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      .+++..+++.++++.+++|++|++|++++|++||++.|+.+|||++.+. ++|+++|+++|+++++|..       .|||
T Consensus         6 ~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL   78 (484)
T PRK07486          6 PDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEY-------RGWL   78 (484)
T ss_pred             hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCC-------CCCc
Confidence            3456778999999999999999999999999999999999999999976 4569999999998888753       6899


Q ss_pred             ccceeeeeecccccC
Q psy2056         201 LGVPLTVKESVAVKV  215 (220)
Q Consensus       201 lGVPftIKDnIdVk~  215 (220)
                      +||||+|||||+++.
T Consensus        79 ~GvPi~vKD~~~v~G   93 (484)
T PRK07486         79 HGMPQAPKDLAPTKG   93 (484)
T ss_pred             CCCeEEEecccccCC
Confidence            999999999999983

>PRK08137 amidase; Provisional

Probab=99.61  E-value=2.1e-15  Score=143.50  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=77.5

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---CCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQV---NPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeev---Np~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      +.+.+++.++++.+++|++|++|++++|++||++.   ||.+||+++.+.+ |+++|++.|++++.|..       .|||
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL   73 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKV-------RGPL   73 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCC-------CCCc
Confidence            45678999999999999999999999999999987   6789999999875 99999999998877753       6899


Q ss_pred             ccceeeeeecccccCCCC
Q psy2056         201 LGVPLTVKESVAVKVPAP  218 (220)
Q Consensus       201 lGVPftIKDnIdVk~~~~  218 (220)
                      +||||+|||||+|++++|
T Consensus        74 ~GvPi~vKD~~~v~~G~~   91 (497)
T PRK08137         74 HGIPVLLKDNIDAADPMP   91 (497)
T ss_pred             CCceeeeecceeecCCCC
Confidence            999999999999994444

>PRK07056 amidase; Provisional

Probab=99.59  E-value=5e-15  Score=139.73  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056         129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNP-MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV  207 (220)
Q Consensus       129 SateLa~~IRsgelTs~EVVeAyIeRIeevNp-~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI  207 (220)
                      ++.++++++++|++|++|++++|++||++.|+ .+||+++.++|+|+++|+++|++.+.|..       .|||+||||+|
T Consensus         7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~v   79 (454)
T PRK07056          7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAA-------PSPLAGIPVSV   79 (454)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCC-------CCCcCCCeEEE
Confidence            89999999999999999999999999999997 59999999999999999999998877753       68999999999


Q ss_pred             eecccccC
Q psy2056         208 KESVAVKV  215 (220)
Q Consensus       208 KDnIdVk~  215 (220)
                      ||+|+++.
T Consensus        80 KD~~~v~G   87 (454)
T PRK07056         80 KDLFDVAG   87 (454)
T ss_pred             EeeeccCC
Confidence            99999984

>PRK06102 hypothetical protein; Provisional

Probab=99.59  E-value=5.8e-15  Score=139.19  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccccee
Q psy2056         126 LLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPL  205 (220)
Q Consensus       126 l~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPf  205 (220)
                      ..+++.++++++++|++|++|+++++++||++.|+ +|||+...+|+|+++|++.|++++.|..       .|||+||||
T Consensus         4 ~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi   75 (452)
T PRK06102          4 GAKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRS-------LGLLDGIPI   75 (452)
T ss_pred             cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeE
Confidence            45689999999999999999999999999999886 8999999999999999999998877753       689999999


Q ss_pred             eeeecccccC
Q psy2056         206 TVKESVAVKV  215 (220)
Q Consensus       206 tIKDnIdVk~  215 (220)
                      +|||||+|+.
T Consensus        76 ~vKD~~~v~G   85 (452)
T PRK06102         76 AWKDLFDVAG   85 (452)
T ss_pred             EEEeccccCC
Confidence            9999999983

>PRK06061 amidase; Provisional

Probab=99.59  E-value=6e-15  Score=140.28  Aligned_cols=84  Identities=35%  Similarity=0.400  Sum_probs=77.3

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      .....++.++++.+++|++|++|+++++++||++.|+.+||+++.++|+|+++|+++|++++.+.        .+||+||
T Consensus        14 ~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~--------~~pL~Gv   85 (483)
T PRK06061         14 NDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD--------RLPLLGV   85 (483)
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC--------CCCcCCC
Confidence            34567899999999999999999999999999999999999999999999999999999888774        2599999


Q ss_pred             eeeeeecccccC
Q psy2056         204 PLTVKESVAVKV  215 (220)
Q Consensus       204 PftIKDnIdVk~  215 (220)
                      ||+|||||+|+.
T Consensus        86 Pv~vKD~~~v~G   97 (483)
T PRK06061         86 PIAVKDDVDVAG   97 (483)
T ss_pred             eEEEEcccccCC
Confidence            999999999984

>PRK12470 amidase; Provisional

Probab=99.58  E-value=5.7e-15  Score=139.73  Aligned_cols=83  Identities=28%  Similarity=0.418  Sum_probs=77.0

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056         125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP  204 (220)
Q Consensus       125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP  204 (220)
                      +...|+.++++.+++|++|++|+++++++||++.|+.+|||+..++|+|+++|++.|++++.|..       . ||+|||
T Consensus         6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~-------~-pL~GvP   77 (462)
T PRK12470          6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGER-------L-PLLGVP   77 (462)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCC-------C-CcCCCe
Confidence            45679999999999999999999999999999999999999999999999999999998887752       4 999999


Q ss_pred             eeeeecccccC
Q psy2056         205 LTVKESVAVKV  215 (220)
Q Consensus       205 ftIKDnIdVk~  215 (220)
                      |+|||||+++.
T Consensus        78 i~vKD~~~v~G   88 (462)
T PRK12470         78 IAIKDDVDVAG   88 (462)
T ss_pred             EEEecCcccCC
Confidence            99999999984

>KOG1212|consensus

Probab=99.57  E-value=9.4e-15  Score=142.12  Aligned_cols=123  Identities=31%  Similarity=0.326  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC---C-CCc---ccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy2056          85 TLIKYLMWFGVRLLLILIWPLTRIRSLSYRHK---P-LPP---ITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQ  157 (220)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~Pp---i~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIee  157 (220)
                      ..++++.+....+....+..+.+.+.+.....   + .|.   ..+.++.+++++|++++++|++||+|++++|+.|+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~   84 (560)
T KOG1212|consen    5 FVMKFLLRQLALIEDAENRLIKFRLLLSLRVKKAKSTAPKLDTTRNAILKLDATELAQALQSGELTSVEVLCAYCHRAIE   84 (560)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCcccchHHHHHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Confidence            46677777777777777776665554421111   1 333   3468999999999999999999999999999999999


Q ss_pred             hCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccccc
Q psy2056         158 VNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK  214 (220)
Q Consensus       158 vNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk  214 (220)
                      +|+.+||+++..+|+++++|+..|+..+.+       ...+||+||||++||+|.++
T Consensus        85 vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~-------~~k~PL~GvP~SvKe~~~vk  134 (560)
T KOG1212|consen   85 VNQKLNCVVEFIFEAALQAAALDDEYTAPL-------YEKPPLYGVPFSVKESISVK  134 (560)
T ss_pred             hccCcceeeeehhhHHHHHhhchhhhhchh-------cccCCceecceehhhheeec
Confidence            999999999999999999998888765533       23689999999999999988

>PRK07869 amidase; Provisional

Probab=99.54  E-value=1.1e-14  Score=137.49  Aligned_cols=80  Identities=36%  Similarity=0.371  Sum_probs=72.2

Q ss_pred             ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056         123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG  202 (220)
Q Consensus       123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG  202 (220)
                      +++..+++.++++++++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|     +        ..|||+|
T Consensus        10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d-----~--------~~gpL~G   76 (468)
T PRK07869         10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPG-----S--------QGGFFSG   76 (468)
T ss_pred             hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcC-----C--------CCCCcCC
Confidence            34566799999999999999999999999999999999999999999999999998765     1        2589999


Q ss_pred             ceeeeeecccccC
Q psy2056         203 VPLTVKESVAVKV  215 (220)
Q Consensus       203 VPftIKDnIdVk~  215 (220)
                      |||+|||||+++.
T Consensus        77 vPi~vKD~~~v~G   89 (468)
T PRK07869         77 VPTFIKDNVDVAG   89 (468)
T ss_pred             CeEEEecCcccCC
Confidence            9999999999983

>PRK06828 amidase; Provisional

Probab=99.54  E-value=2.3e-14  Score=137.27  Aligned_cols=81  Identities=16%  Similarity=0.287  Sum_probs=73.9

Q ss_pred             ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      ..++.++++++++|++||+|++++|++||++.|   +.+|||+..+.+ |+++|++.|++++.|..       .|||+||
T Consensus        12 ~~~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL~Gv   83 (491)
T PRK06828         12 ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGV-------RGPLHGI   83 (491)
T ss_pred             cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCC-------CCCccCc
Confidence            358999999999999999999999999999998   589999999887 89999999988877752       6899999


Q ss_pred             eeeeeecccccC
Q psy2056         204 PLTVKESVAVKV  215 (220)
Q Consensus       204 PftIKDnIdVk~  215 (220)
                      ||+|||||+|+.
T Consensus        84 Pv~vKD~~~v~g   95 (491)
T PRK06828         84 PVLLKDNIETND   95 (491)
T ss_pred             eeeeeeeEEecC
Confidence            999999999995

>PRK07488 indole acetimide hydrolase; Validated

Probab=99.54  E-value=2.4e-14  Score=135.55  Aligned_cols=84  Identities=27%  Similarity=0.381  Sum_probs=75.9

Q ss_pred             ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056         123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG  202 (220)
Q Consensus       123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG  202 (220)
                      +++..+++.++++.+++|++|++|++++|++||++.+ .+|||++.++|+|+++|++.|++++.|..       .+ |+|
T Consensus         6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~g-L~G   76 (472)
T PRK07488          6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAA-------LL-LAG   76 (472)
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCC-------CC-cCc
Confidence            4467789999999999999999999999999999976 59999999999999999999998877642       45 999


Q ss_pred             ceeeeeecccccC
Q psy2056         203 VPLTVKESVAVKV  215 (220)
Q Consensus       203 VPftIKDnIdVk~  215 (220)
                      |||+|||||+|+.
T Consensus        77 vPi~vKD~~~v~G   89 (472)
T PRK07488         77 VPIVIKDNINTAG   89 (472)
T ss_pred             eEEEEEcccccCC
Confidence            9999999999984

>PRK06707 amidase; Provisional

Probab=99.51  E-value=5.7e-14  Score=136.11  Aligned_cols=85  Identities=24%  Similarity=0.390  Sum_probs=74.7

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcc
Q psy2056         125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLL  201 (220)
Q Consensus       125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLl  201 (220)
                      +...++.++++.+++|++|++|++++|++||++.|   +.+||+++.+.+ |+++|++.|++++.+.        .+||+
T Consensus        68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~--------~~pL~  138 (536)
T PRK06707         68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNK--------KSNLY  138 (536)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCC--------CCCcC
Confidence            44578999999999999999999999999999998   479999999875 9999999998876663        48999


Q ss_pred             cceeeeeecccccCCCC
Q psy2056         202 GVPLTVKESVAVKVPAP  218 (220)
Q Consensus       202 GVPftIKDnIdVk~~~~  218 (220)
                      ||||+|||||+++.++|
T Consensus       139 GiPi~vKD~i~~~~g~~  155 (536)
T PRK06707        139 GIPVVVKDNVQTAKVMP  155 (536)
T ss_pred             CCeEEEecccccCCCCc
Confidence            99999999999954454

>PRK06565 amidase; Validated

Probab=99.50  E-value=6.3e-14  Score=136.88  Aligned_cols=84  Identities=31%  Similarity=0.370  Sum_probs=75.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC-----CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCC
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN-----PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDT  198 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN-----p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~g  198 (220)
                      .+...++.++++++++|++|++|++++|++||++.|     +.+||++..+.+ |+++|++.|++++.|..       .+
T Consensus         3 ~i~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~-------~g   74 (566)
T PRK06565          3 EVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGET-------LG   74 (566)
T ss_pred             ccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCC-------CC
Confidence            356779999999999999999999999999999999     689999987765 99999999998877752       58


Q ss_pred             CcccceeeeeecccccC
Q psy2056         199 PLLGVPLTVKESVAVKV  215 (220)
Q Consensus       199 PLlGVPftIKDnIdVk~  215 (220)
                      ||+||||+|||||+++.
T Consensus        75 pL~GIPi~vKD~~~v~G   91 (566)
T PRK06565         75 PLDGIPYTAKDSYLVKG   91 (566)
T ss_pred             CCCCCEEEEecccccCC
Confidence            99999999999999984

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1e-13  Score=132.67  Aligned_cols=85  Identities=40%  Similarity=0.514  Sum_probs=77.7

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHH--HHHHHHHHHHcCCccccccCCCCCcc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALE--EAKQVDILLAASTKSVEEIGRDTPLL  201 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~--eAr~lD~r~a~g~~~~~~l~~~gPLl  201 (220)
                      .+...++.++++.++++++|++|+++++++||++.|+.+||++..+.|.|+.  +|++.|++.++|.       ..|||+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~-------~~gpL~   75 (475)
T COG0154           3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGE-------PLGPLA   75 (475)
T ss_pred             chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCC-------CCCCcC
Confidence            3556789999999999999999999999999999999999999999998865  9999999998884       269999


Q ss_pred             cceeeeeecccccC
Q psy2056         202 GVPLTVKESVAVKV  215 (220)
Q Consensus       202 GVPftIKDnIdVk~  215 (220)
                      |||++|||||+|+.
T Consensus        76 GvPiavKDn~~~~G   89 (475)
T COG0154          76 GVPIAVKDNIDTAG   89 (475)
T ss_pred             CceEEEeeccccCC
Confidence            99999999999984

>PRK06529 amidase; Provisional

Probab=99.48  E-value=8.7e-14  Score=132.08  Aligned_cols=76  Identities=37%  Similarity=0.534  Sum_probs=69.4

Q ss_pred             ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceee
Q psy2056         127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLT  206 (220)
Q Consensus       127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPft  206 (220)
                      .+++.++++.+++|++|+.|+++++++||++.|+.+|||++.++|+|+++|++.|+.             .+||+||||+
T Consensus         3 ~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~-------------~~PL~GvPi~   69 (482)
T PRK06529          3 YKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS-------------GKPFAGVPIF   69 (482)
T ss_pred             cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhcccc-------------CCCcCCCeEE
Confidence            468999999999999999999999999999999999999999999999999988731             2599999999


Q ss_pred             eeec-ccccC
Q psy2056         207 VKES-VAVKV  215 (220)
Q Consensus       207 IKDn-IdVk~  215 (220)
                      |||| ++|+.
T Consensus        70 vKD~~~~v~G   79 (482)
T PRK06529         70 LKDLGQELKG   79 (482)
T ss_pred             EecCCcccCC
Confidence            9998 79983

>PRK11910 amidase; Provisional

Probab=99.47  E-value=1.3e-13  Score=135.73  Aligned_cols=82  Identities=26%  Similarity=0.400  Sum_probs=73.2

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC---CcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNP---MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp---~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      .+...++.++++.+++|++|++|++++|++||++.|+   .+|||++.+++ |+++|+++|+.++.+         .|||
T Consensus       161 ~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~---------~gPL  230 (615)
T PRK11910        161 LIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTN---------KSAL  230 (615)
T ss_pred             cchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccC---------CCCc
Confidence            3466789999999999999999999999999999997   79999999985 899999999865433         4899


Q ss_pred             ccceeeeeecccccC
Q psy2056         201 LGVPLTVKESVAVKV  215 (220)
Q Consensus       201 lGVPftIKDnIdVk~  215 (220)
                      +||||+|||||+++.
T Consensus       231 ~GIPv~VKDni~t~G  245 (615)
T PRK11910        231 YGMPVLLKDNIGTKE  245 (615)
T ss_pred             CCCEEEEEcCcccCC
Confidence            999999999999983

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=99.46  E-value=9.7e-14  Score=130.76  Aligned_cols=71  Identities=32%  Similarity=0.508  Sum_probs=65.4

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccc
Q psy2056         133 TALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVA  212 (220)
Q Consensus       133 La~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnId  212 (220)
                      |++++++|++|++|++++|++||++.|+.+|||++.+.|+|+++|++.|+++            .|||+||||+|||||+
T Consensus         1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~------------~gpL~GvPv~vKD~~~   68 (460)
T TIGR00132         1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAI------------LTPLAGIPIAVKDNIS   68 (460)
T ss_pred             ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhc------------cCCcCCcEEEEecccc
Confidence            4678999999999999999999999999999999999999999999999652            1799999999999999


Q ss_pred             ccC
Q psy2056         213 VKV  215 (220)
Q Consensus       213 Vk~  215 (220)
                      |+.
T Consensus        69 v~G   71 (460)
T TIGR00132        69 TKG   71 (460)
T ss_pred             cCC
Confidence            984

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=99.45  E-value=1.5e-13  Score=129.49  Aligned_cols=71  Identities=35%  Similarity=0.615  Sum_probs=65.6

Q ss_pred             HHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056         137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       137 IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~  215 (220)
                      +++|++|++|+++++++||++.|+.+||+++.++|+|+++|++.|+++++|.        .+||+||||+|||||+|+.
T Consensus         1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~--------~gpL~GvPv~vKD~~~v~G   71 (459)
T PRK00012          1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE--------AGPLAGIPIAIKDNICTKG   71 (459)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC--------CCccCCeEEEEecccccCC
Confidence            4689999999999999999999999999999999999999999998877653        4899999999999999984

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=99.39  E-value=2.8e-13  Score=121.53  Aligned_cols=62  Identities=39%  Similarity=0.659  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccccc
Q psy2056         146 KVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK  214 (220)
Q Consensus       146 EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk  214 (220)
                      |++++|++||++.|+.+||+++..+++|+++|++.|++++.+..       .+||+||||+|||||+++
T Consensus         1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~-------~~pL~Gip~~vKD~~~~~   62 (441)
T PF01425_consen    1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKP-------RGPLHGIPISVKDNIDVA   62 (441)
T ss_dssp             HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSS-------SSTTTT-EEEEETTBSBT
T ss_pred             CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCC-------CCCCCCCceecccccccc
Confidence            79999999999999999999999999999999999999886653       799999999999999998

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK08186 allophanate hydrolase; Provisional

Probab=99.38  E-value=1.2e-12  Score=128.46  Aligned_cols=78  Identities=22%  Similarity=0.186  Sum_probs=69.7

Q ss_pred             ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeCh-hHHHHHHHHHHHHHHcCCccccccCCCCCccccee
Q psy2056         127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERF-NLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPL  205 (220)
Q Consensus       127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rf-E~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPf  205 (220)
                      .+++.++++.+++|++|++|+++++++||++ ++.+|+|+..+. ++|+++|+++|++.+          ..+||+||||
T Consensus         6 ~~t~~~l~~~~~~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~----------~~gPL~GVP~   74 (600)
T PRK08186          6 DLTLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDP----------AALPLYGVPF   74 (600)
T ss_pred             cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhcc----------ccCCCCCCeE
Confidence            4589999999999999999999999999998 678999999987 579999999997643          1489999999


Q ss_pred             eeeecccccC
Q psy2056         206 TVKESVAVKV  215 (220)
Q Consensus       206 tIKDnIdVk~  215 (220)
                      +|||||||+.
T Consensus        75 aVKDnidvaG   84 (600)
T PRK08186         75 AVKDNIDVAG   84 (600)
T ss_pred             EeecceecCC
Confidence            9999999983

>PRK05962 amidase; Validated

Probab=99.17  E-value=4.4e-11  Score=112.17  Aligned_cols=60  Identities=22%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056         149 EAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       149 eAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~  215 (220)
                      +++++||++.|+.+|||++.++|+|+++|++.|+++++|..       .|||+||||+|||||+|+.
T Consensus         2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G   61 (424)
T PRK05962          2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRS-------LGPLDGRIVSIKDLFDVAG   61 (424)
T ss_pred             HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCC-------CCCCCCCEEEEEeeeecCC
Confidence            68999999999999999999999999999999998877753       6999999999999999983

>PRK07235 amidase; Provisional

Probab=98.89  E-value=1.4e-09  Score=104.58  Aligned_cols=84  Identities=14%  Similarity=0.053  Sum_probs=73.6

Q ss_pred             ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056         123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG  202 (220)
Q Consensus       123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG  202 (220)
                      .++...++.++.+.++ +++++.|++++..++++.+++..|++...+.|++...|...+.+ .+|.       ..|||+|
T Consensus        20 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~g~-------~~gpL~G   90 (502)
T PRK07235         20 LDLTDEELASYLSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS-IKGA-------AEGKLAG   90 (502)
T ss_pred             CCCChhhHHHHHHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc-cCCC-------CCCCcCC
Confidence            3456788999999999 99999999999999999999999999999999998888888766 3443       3689999


Q ss_pred             ceeeeeecccccC
Q psy2056         203 VPLTVKESVAVKV  215 (220)
Q Consensus       203 VPftIKDnIdVk~  215 (220)
                      |||+|||||+|+.
T Consensus        91 vPiavKD~i~v~G  103 (502)
T PRK07235         91 KTVALKDNVAVAG  103 (502)
T ss_pred             ceEEEecccccCC
Confidence            9999999999983

>KOG1211|consensus

Probab=98.36  E-value=4.7e-07  Score=88.04  Aligned_cols=71  Identities=24%  Similarity=0.438  Sum_probs=60.6

Q ss_pred             HHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056         137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       137 IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~  215 (220)
                      +.+|.+++.+.++.+++++...++. |+++....++++.+|+.+|++.+.+.       ..+||.|+|++|||||++++
T Consensus        27 l~~~~l~~~~~ie~~l~~~~~~~~~-~~~i~~~~~~~~~~a~~~~~~~~~~~-------~~~~L~Gv~i~IKDnf~tk~   97 (506)
T KOG1211|consen   27 LSSGLLTSKRIIESYLERINKWKPL-NAKITVINEEALKQAEEVTRRRKNGM-------EKGPLQGVPIAIKDNFDTKD   97 (506)
T ss_pred             hcccccchHHHHHHHHHHHhhcccc-cceeeeccHHHHHHhhhccccccCCC-------cCCCcCCceEEEeeceecCC
Confidence            7889999999999999999988765 55556666789999999998776654       36899999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	1e-15
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	9e-15
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	1e-11
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	5e-11
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-10
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	6e-09
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	2e-08
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	4e-07
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	9e-06
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	2e-05

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score = 73.8 bits (182), Expect = 1e-15
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)

Query: 122 TNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVD 181
           +   L   A   A L+R+ ++S  +++EA I  ++ VNP +NAV+   F  A  E++   
Sbjct: 2   SKVDLWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELA- 60

Query: 182 ILLAASTKSVEEIGRDTPLLGVPLTVKESVAV 213
                            P  GVP  +K+   V
Sbjct: 61  ---------------SGPFAGVPYLLKDLTVV 77

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score = 71.4 bits (175), Expect = 9e-15
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 109 RSLSYRHKPLPPITNQLLLN-SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVD 167
           +++       P + ++ LL     +    +++ ++S   V   ++ +  +VN   N V  
Sbjct: 51  KAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTS 110

Query: 168 ERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
              +   + ++                 R   L GVP+++KE  + K
Sbjct: 111 YLTDCETQLSQ---------------APRQGLLYGVPVSLKECFSYK 142

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S +    LI+ K++    VV+     I + +P + + +      A+++A+++D L A   
Sbjct: 7   SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKD- 65

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
              +  G    L G+P+ +K+++   
Sbjct: 66  ---QMDG---KLFGIPMGIKDNIITN 85

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
              +   L+ T + + + ++E  + R +      NA+       A +EA  +   L    
Sbjct: 2   DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRG- 59

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
              +  G   PL G+PLTVK+   VK
Sbjct: 60  ---QVRG---PLHGLPLTVKDLFPVK 79

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S  +   L++  +VS  +VVE+F  R  Q    + A +   +  AL++A+ +        
Sbjct: 6   SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLK------- 58

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                  R+ PL G+P+ VK+++ V+
Sbjct: 59  ------ERELPLFGIPIAVKDNILVE 78

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAV--VDERFNLALEEAKQVDIL 183
                   +   ++    + +A++ RI  ++   P L AV  ++     AL+EA + D  
Sbjct: 12  DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD---ALKEAAERDRE 68

Query: 184 LAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
                      G   PL G+PL +K+++   
Sbjct: 69  RRDG----RLRG---PLHGIPLLLKDNINAA 92

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 19/88 (21%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNA--VVDERFNLALEEAKQVDILLAA 186
            A +    +   +VS ++V +A++ R+++++P L A   ++ER    LEEA+ VD     
Sbjct: 2   LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNER---LLEEAEAVD----- 53

Query: 187 STKSVEEIGRDTPLLGVPLTVKESVAVK 214
                       PL G+ + VK+++A +
Sbjct: 54  ---------PGLPLAGLVVAVKDNIATR 72

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
            ++  +    K+ +  +  I++++P + A +  R N+++E+                   
Sbjct: 15  CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG----------------- 57

Query: 196 RDTPLLGVPLTVKESVAVK 214
                 G+P+ +K+++   
Sbjct: 58  ---KFWGIPVAIKDNILTL 73

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 24/82 (29%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNA--VVDERFNLALEEAKQVDILLAA 186
           S       I T ++S    +      I      ++A    D+      + +         
Sbjct: 3   SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS--ARAQASG-------- 52

Query: 187 STKSVEEIGRDTPLLGVPLTVK 208
                       PL G+ + +K
Sbjct: 53  ------------PLRGIAVGIK 62

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 4/99 (4%)

Query: 119 PPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFIT---RIRQVNPMLNAVVDERFNLALE 175
            P    +   +      L +T ++    +++  +     + Q+              A+ 
Sbjct: 5   RPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSREHAVP 64

Query: 176 EAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
            A + + L A    +      D  L G  + +K++V V 
Sbjct: 65  SASE-NPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVA 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	99.69
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	99.68
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	99.66
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	99.57
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	99.49
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	99.48
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	99.42
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	99.35
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	99.18
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	98.37

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=99.69  E-value=2.6e-17  Score=154.83  Aligned_cols=84  Identities=19%  Similarity=0.355  Sum_probs=78.2

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHH-HcCCccccccCCCCCccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILL-AASTKSVEEIGRDTPLLG  202 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~-a~g~~~~~~l~~~gPLlG  202 (220)
                      ++..+|++++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|+++|+++ ++|.       . |||+|
T Consensus         2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~-------~-gpL~G   73 (485)
T 3ip4_A            2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM-------D-GKLFG   73 (485)
T ss_dssp             CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC-------C-STTTT
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCC-------C-CCcCC
Confidence            4677899999999999999999999999999999999999999999999999999999988 6663       3 99999


Q ss_pred             ceeeeeecccccC
Q psy2056         203 VPLTVKESVAVKV  215 (220)
Q Consensus       203 VPftIKDnIdVk~  215 (220)
                      |||+|||||+++.
T Consensus        74 vPi~vKD~~~v~G   86 (485)
T 3ip4_A           74 IPMGIKDNIITNG   86 (485)
T ss_dssp             CEEEEETTBCBTT
T ss_pred             CEEEEEcCcccCC
Confidence            9999999999983

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=99.68  E-value=8.4e-17  Score=149.60  Aligned_cols=80  Identities=25%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056         128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV  207 (220)
Q Consensus       128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI  207 (220)
                      +++.++++++++|++|++|++++|++||++.|+ +|||++.++|+|+++|+++|+++++|..       .|||+||||+|
T Consensus         1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~-------~gpL~GvPi~v   72 (434)
T 2dc0_A            1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV-------RGPLHGLPLTV   72 (434)
T ss_dssp             CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEE
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC-------CCCcCCeeEEE
Confidence            478999999999999999999999999999999 9999999999999999999999888753       68999999999


Q ss_pred             eecccccC
Q psy2056         208 KESVAVKV  215 (220)
Q Consensus       208 KDnIdVk~  215 (220)
                      ||||+++.
T Consensus        73 KD~~~v~G   80 (434)
T 2dc0_A           73 KDLFPVKG   80 (434)
T ss_dssp             ETTSCBTT
T ss_pred             EeccccCC
Confidence            99999983

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=99.66  E-value=2.8e-16  Score=148.36  Aligned_cols=84  Identities=21%  Similarity=0.345  Sum_probs=77.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      ++..+++.++++++++|++|++|++++|++||++.|   |.+|||++.++| |+++|+++|+++++|..       .|||
T Consensus         7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~-------~gpL   78 (503)
T 1m22_A            7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL-------RGPL   78 (503)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC-------CSTT
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC-------CCCc
Confidence            456679999999999999999999999999999999   999999999988 99999999998887753       6999


Q ss_pred             ccceeeeeecccccC
Q psy2056         201 LGVPLTVKESVAVKV  215 (220)
Q Consensus       201 lGVPftIKDnIdVk~  215 (220)
                      +||||+|||||+++.
T Consensus        79 ~GvPi~vKD~~~v~G   93 (503)
T 1m22_A           79 HGIPLLLKDNINAAP   93 (503)
T ss_dssp             TTCEEEEETTBCCTT
T ss_pred             CCceeEeecccccCC
Confidence            999999999999984

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=99.57  E-value=8.2e-16  Score=144.78  Aligned_cols=78  Identities=28%  Similarity=0.440  Sum_probs=71.4

Q ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056         125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP  204 (220)
Q Consensus       125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP  204 (220)
                      +..++++++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|++.|++             .|||+|||
T Consensus         2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~-------------~gpL~GvP   68 (478)
T 3h0l_A            2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-------------ELPLFGIP   68 (478)
T ss_dssp             CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT-------------TSTTTTCE
T ss_pred             CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh-------------cCCcCCce
Confidence            34679999999999999999999999999999999999999999999999999877632             48999999


Q ss_pred             eeeeecccccC
Q psy2056         205 LTVKESVAVKV  215 (220)
Q Consensus       205 ftIKDnIdVk~  215 (220)
                      |+|||||+++.
T Consensus        69 i~vKD~~~~~G   79 (478)
T 3h0l_A           69 IAVKDNILVEG   79 (478)
T ss_dssp             EEEETTBCCTT
T ss_pred             EEEEcCccCCC
Confidence            99999999984

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=99.49  E-value=1.7e-14  Score=135.71  Aligned_cols=75  Identities=31%  Similarity=0.442  Sum_probs=69.2

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      ++.. ++.++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|++ |               .|||+||
T Consensus         5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d---------------~gpL~Gv   67 (493)
T 3a2q_A            5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A---------------SGPFAGV   67 (493)
T ss_dssp             CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C---------------CSTTTTC
T ss_pred             hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c---------------CCCcCCc
Confidence            4556 899999999999999999999999999999999999999999999999987 5               1799999


Q ss_pred             eeeeeecc-cccC
Q psy2056         204 PLTVKESV-AVKV  215 (220)
Q Consensus       204 PftIKDnI-dVk~  215 (220)
                      ||+||||| +++.
T Consensus        68 Pi~vKD~~~~v~G   80 (493)
T 3a2q_A           68 PYLLKDLTVVSQG   80 (493)
T ss_dssp             EEEEESSSSCCTT
T ss_pred             EEEEecCCcCcCC
Confidence            99999999 9984

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.48  E-value=1.2e-14  Score=136.79  Aligned_cols=73  Identities=29%  Similarity=0.442  Sum_probs=66.5

Q ss_pred             cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056         128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV  207 (220)
Q Consensus       128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI  207 (220)
                      |+++++++++++|++|++|++++|++||++.|+.+|||++.+ |+|+++|++.|+              ..||+||||+|
T Consensus         1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~--------------~~pL~GvPi~v   65 (471)
T 3kfu_E            1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDP--------------GLPLAGLVVAV   65 (471)
T ss_dssp             -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCC--------------SCTTTTCEEEE
T ss_pred             CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCc--------------cCCcCCCeEEE
Confidence            578999999999999999999999999999999999999999 999999987652              23999999999


Q ss_pred             eecccccC
Q psy2056         208 KESVAVKV  215 (220)
Q Consensus       208 KDnIdVk~  215 (220)
                      ||||+++.
T Consensus        66 KD~~~~~G   73 (471)
T 3kfu_E           66 KDNIATRG   73 (471)
T ss_dssp             ETTBCCTT
T ss_pred             ECCcccCC
Confidence            99999984

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=99.42  E-value=7.3e-14  Score=134.81  Aligned_cols=83  Identities=22%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CCccc-ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCC
Q psy2056         118 LPPIT-NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR  196 (220)
Q Consensus       118 ~Ppi~-~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~  196 (220)
                      .|+.+ +++..++++++++++++|++|++|++++|++||++.|+.+||+++..+| +.++|++.+              .
T Consensus        60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~--------------~  124 (573)
T 3ppm_A           60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAP--------------R  124 (573)
T ss_dssp             CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCC--------------T
T ss_pred             CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhh--------------h
Confidence            56654 7788999999999999999999999999999999999999999998865 544443321              1


Q ss_pred             CCCcccceeeeeecccccC
Q psy2056         197 DTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       197 ~gPLlGVPftIKDnIdVk~  215 (220)
                      .|||+||||+|||||+++.
T Consensus       125 ~gpL~GvPi~vKD~~~~~G  143 (573)
T 3ppm_A          125 QGLLYGVPVSLKECFSYKG  143 (573)
T ss_dssp             TCTTTTCEEEEETTBCCBT
T ss_pred             cCCcCCCeEEEEcccCCCC
Confidence            4899999999999999983

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=99.35  E-value=3.1e-13  Score=125.10  Aligned_cols=68  Identities=16%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056         128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV  207 (220)
Q Consensus       128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI  207 (220)
                      +++.++++++++|++|++|++++|++||++.|+.+|||++.++|+| +           .        ..+||+||||+|
T Consensus         2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----------~--------~~gpL~GvPi~v   61 (414)
T 1o9p_A            2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----------Q--------ASGPLRGIAVGI   61 (414)
T ss_dssp             CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----------C--------SSSTTTTCEEEE
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----------c--------cCCCcCCCEEEE
Confidence            5899999999999999999999999999999999999999998876 2           1        158999999999


Q ss_pred             eecccccC
Q psy2056         208 KESVAVKV  215 (220)
Q Consensus       208 KDnIdVk~  215 (220)
                      ||||+++.
T Consensus        62 KD~~~v~G   69 (414)
T 1o9p_A           62 KDIIDTAN   69 (414)
T ss_dssp             ETTBCCSS
T ss_pred             EcccccCC
Confidence            99999984

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=99.18  E-value=1.2e-12  Score=122.66  Aligned_cols=72  Identities=14%  Similarity=0.311  Sum_probs=63.2

Q ss_pred             ccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         121 ITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       121 i~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      ++.++..+++.++   +++|++|++|++++|++||++.|+.+|||++.++|+|+      |+             . +||
T Consensus         3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~-------------~-gpL   59 (476)
T 2gi3_A            3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK-------------K-GKF   59 (476)
T ss_dssp             SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC-------------C-STT
T ss_pred             CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc-------------c-CCc
Confidence            3456677899999   99999999999999999999999999999999988765      10             2 799


Q ss_pred             ccceeeeeecccccC
Q psy2056         201 LGVPLTVKESVAVKV  215 (220)
Q Consensus       201 lGVPftIKDnIdVk~  215 (220)
                      +||||+|||||+++.
T Consensus        60 ~GvPi~vKD~~~v~G   74 (476)
T 2gi3_A           60 WGIPVAIKDNILTLG   74 (476)
T ss_dssp             TTCEEEEETTBCCSS
T ss_pred             CCceEEEEcCccCCC
Confidence            999999999999984

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=98.37  E-value=1.1e-09  Score=104.26  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             CcccccccccCHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCcceEE-eeChhHHHHHHHHHHHH-H--------HcC
Q psy2056         119 PPITNQLLLNSAQKTALLIRTKQVSC-VKVVEAFITRIRQVNPMLNAVV-DERFNLALEEAKQVDIL-L--------AAS  187 (220)
Q Consensus       119 Ppi~~~Ll~lSateLa~~IRsgelTs-~EVVeAyIeRIeevNp~LNA~V-~~rfE~AL~eAr~lD~r-~--------a~g  187 (220)
                      ++++..-+..++.++...+.+++++. .+++++++++++++++..|+++ ...++++ .++.+.|+. .        ..|
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g   82 (521)
T 3a1k_A            4 IRPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPP   82 (521)
T ss_dssp             CCCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcC
Confidence            34444556677888888999999999 9999999999999887776666 5555555 444444321 0        011


Q ss_pred             CccccccCCCCCcccceeeeeecccccC
Q psy2056         188 TKSVEEIGRDTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       188 ~~~~~~l~~~gPLlGVPftIKDnIdVk~  215 (220)
                      .       ..|||+||||+|||||+++.
T Consensus        83 ~-------~~gpL~GvPi~vKD~i~v~G  103 (521)
T 3a1k_A           83 T-------SDGVLTGRRVAIKDNVTVAG  103 (521)
T ss_dssp             S-------SCCTTTTCEEEEETTBCCTT
T ss_pred             C-------CCCCCCCCEEEEEcCcccCC
Confidence            1       25899999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	5e-19
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	9e-16
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	1e-14
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	1e-12
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	2e-11

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 82.5 bits (203), Expect = 5e-19
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S +    LI+ K++    VV+     I + +P + + +      A+++A+++D L A   
Sbjct: 7   SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                   D  L G+P+ +K+++   
Sbjct: 67  -------MDGKLFGIPMGIKDNIITN 85

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.2 bits (178), Expect = 9e-16
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 109 RSLSYRHKPLPPITNQLLLN-SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVD 167
           +++       P + ++ LL     +    +++ ++S   V   ++ +  +VN   N V  
Sbjct: 21  KAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTS 80

Query: 168 ERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
              +   + ++                 R   L GVP+++KE  + K
Sbjct: 81  YLTDCETQLSQA---------------PRQGLLYGVPVSLKECFSYK 112

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score = 69.8 bits (169), Expect = 1e-14
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIR---QVNPMLNAVVDERFNLALEEAKQVDILLA 185
                   +   ++    + +A++ RI    +  P L AV++   + AL+EA + D    
Sbjct: 8   DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERR 66

Query: 186 ASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
                    G   PL G+PL +K+++   
Sbjct: 67  DG----RLRG---PLHGIPLLLKDNINAA 88

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
            ++  +    K+ +  +  I++++P + A +  R N+++E+                   
Sbjct: 14  CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG----------------- 56

Query: 196 RDTPLLGVPLTVKESVAVK 214
                 G+P+ +K+++   
Sbjct: 57  ---KFWGIPVAIKDNILTL 72

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 20/86 (23%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S       I T ++S    +      I      ++A V    +   + +           
Sbjct: 3   SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASG---------- 52

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                     PL G+ + +K+ +   
Sbjct: 53  ----------PLRGIAVGIKDIIDTA 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	99.75
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	99.73
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	99.58
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	99.43
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	99.25

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.75  E-value=5.5e-19  Score=159.68  Aligned_cols=85  Identities=21%  Similarity=0.379  Sum_probs=79.6

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV  203 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV  203 (220)
                      .+...|+.||++++++|++|++|++++|++||++.|+.+||+++.++|+|+++|+++|+++++|+.       .|||+||
T Consensus         2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~-------~gpL~Gi   74 (485)
T d2f2aa1           2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM-------DGKLFGI   74 (485)
T ss_dssp             CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTC
T ss_pred             CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCcC
Confidence            356789999999999999999999999999999999999999999999999999999999888753       6999999


Q ss_pred             eeeeeecccccC
Q psy2056         204 PLTVKESVAVKV  215 (220)
Q Consensus       204 PftIKDnIdVk~  215 (220)
                      ||+|||+++|+.
T Consensus        75 Pi~vKD~~~v~g   86 (485)
T d2f2aa1          75 PMGIKDNIITNG   86 (485)
T ss_dssp             EEEEETTBCBTT
T ss_pred             eEEEEcccccCC
Confidence            999999999983

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=99.73  E-value=5.2e-18  Score=151.52  Aligned_cols=83  Identities=22%  Similarity=0.350  Sum_probs=75.9

Q ss_pred             cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---CCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056         124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQV---NPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL  200 (220)
Q Consensus       124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeev---Np~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL  200 (220)
                      ++...|+.+|++++++|++|++|++++|++||++.   ||.+|||++.+.| |+++|++.|+++++|..       .|||
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~-------~gpL   74 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL-------RGPL   74 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC-------CSTT
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCC-------CCCc
Confidence            67789999999999999999999999999999754   6889999998765 99999999999988863       6999


Q ss_pred             ccceeeeeeccccc
Q psy2056         201 LGVPLTVKESVAVK  214 (220)
Q Consensus       201 lGVPftIKDnIdVk  214 (220)
                      +||||+|||||+|+
T Consensus        75 ~GvP~~vKD~~~v~   88 (490)
T d1m22a_          75 HGIPLLLKDNINAA   88 (490)
T ss_dssp             TTCEEEEETTBCCT
T ss_pred             CCCEEEEEcccccC
Confidence            99999999999998

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.1e-16  Score=144.48  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=72.0

Q ss_pred             CCccc-ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCC
Q psy2056         118 LPPIT-NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR  196 (220)
Q Consensus       118 ~Ppi~-~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~  196 (220)
                      .|... ++|+.+|+.|+++++++|++|++|++++|++||++.|+.+||+++..+|++.+.|        ++.       .
T Consensus        30 ~~~~~~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a--------~~~-------~   94 (537)
T d1mt5a_          30 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS--------QAP-------R   94 (537)
T ss_dssp             CCSSCSHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH--------TCC-------T
T ss_pred             CCCCChHHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHH--------cCC-------C
Confidence            45553 5699999999999999999999999999999999999999999999988665444        243       2


Q ss_pred             CCCcccceeeeeecccccC
Q psy2056         197 DTPLLGVPLTVKESVAVKV  215 (220)
Q Consensus       197 ~gPLlGVPftIKDnIdVk~  215 (220)
                      .|||+||||+|||||+++.
T Consensus        95 ~gpL~GvPi~vKD~~~~~g  113 (537)
T d1mt5a_          95 QGLLYGVPVSLKECFSYKG  113 (537)
T ss_dssp             TSTTTTCEEEEETTSCCBT
T ss_pred             CCCcCCCeEEeEcccCcCC
Confidence            6999999999999999984

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.43  E-value=3.4e-14  Score=125.11  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056         128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV  207 (220)
Q Consensus       128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI  207 (220)
                      +|+.|+++++++|++|++|++++|++||++.|+.+||+++.+.+             +.++       ..|||+||||+|
T Consensus         2 ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~-------------~~~~-------~~gpL~GvPi~v   61 (412)
T d1ocka_           2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-------------ARAQ-------ASGPLRGIAVGI   61 (412)
T ss_dssp             CCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-------------CCCC-------SSSTTTTCEEEE
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH-------------hcCc-------cCCCcCCCEEEE
Confidence            68999999999999999999999999999999999999986532             1232       369999999999


Q ss_pred             eecccccC
Q psy2056         208 KESVAVKV  215 (220)
Q Consensus       208 KDnIdVk~  215 (220)
                      ||+|+|+.
T Consensus        62 KD~~~v~G   69 (412)
T d1ocka_          62 KDIIDTAN   69 (412)
T ss_dssp             ETTBCCSS
T ss_pred             EcccCCCC
Confidence            99999983

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=7e-14  Score=125.23  Aligned_cols=63  Identities=14%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccc
Q psy2056         133 TALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVA  212 (220)
Q Consensus       133 La~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnId  212 (220)
                      +++.++.|++|++|++++|++||+++||.+|||++.++++|+                    +..|||+||||+|||||+
T Consensus        11 ~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~--------------------~~~gpL~GvPi~vKD~~~   70 (475)
T d2gi3a1          11 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV--------------------EKKGKFWGIPVAIKDNIL   70 (475)
T ss_dssp             HHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC--------------------CCCSTTTTCEEEEETTBC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhh--------------------hccCCCCCCEEEEEcccC
Confidence            677899999999999999999999999999999999876432                    135899999999999999


Q ss_pred             ccC
Q psy2056         213 VKV  215 (220)
Q Consensus       213 Vk~  215 (220)
                      ++.
T Consensus        71 ~~g   73 (475)
T d2gi3a1          71 TLG   73 (475)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            984