Psyllid ID: psy2073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEcccccEEEEcccccccccccEEEEEEEEEcccccHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccccHccccccEEEEEEEEEEcHHHHHHHccccHHHHHHHccHHcccccccccHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpyqeipfgfiynkNYSILFYSTLSESLLQVAHLekdgryltikdnqvvqlhpstcldhkpewvVYNEFVLTTKNYIRTvtdvkpewliKLAPqyyelqnfpqcEAKRQLEILQAKMETRQYQDGF
Flexible Loop (DISEMBL)
mpyqeipfGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHpstcldhkpeWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKmetrqyqdgf
Low Complexity Region (SEG)
MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF
Disordered region (IsUnstruct)
****EIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEI**************
Disordered Region (DISOPRED)
***********YNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYE*****************************
Disordered Region (DISEMBL)
MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKME********
Disordered Region (DISPRO)
*****IPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q5RAZ4	795	Putative pre-mRNA-splicin	yes	N/A	0.746	0.118	0.755	5e-41
O43143	795	Putative pre-mRNA-splicin	yes	N/A	0.746	0.118	0.755	5e-41
O35286	795	Putative pre-mRNA-splicin	yes	N/A	0.746	0.118	0.755	5e-41
O22899	729	Probable pre-mRNA-splicin	yes	N/A	0.769	0.133	0.659	4e-35
Q20875	739	Putative pre-mRNA-splicin	yes	N/A	0.746	0.127	0.649	1e-33
P53131	767	Pre-mRNA-splicing factor	yes	N/A	0.722	0.118	0.554	2e-24
O42945	735	Probable pre-mRNA-splicin	yes	N/A	0.706	0.121	0.571	1e-22
Q54NJ4	727	Putative pre-mRNA-splicin	yes	N/A	0.603	0.104	0.539	3e-19
Q54MH3	1106	Putative pre-mRNA-splicin	no	N/A	0.626	0.071	0.430	1e-13
Q09530	1200	Probable pre-mRNA-splicin	no	N/A	0.468	0.049	0.483	2e-13

>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query: 29  LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
           +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query: 89  IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
           +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query: 29  LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
           +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query: 89  IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
           +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2

 Score =  166 bits (419), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query: 29  LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
           +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct: 699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query: 89  IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
           +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct: 759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 78/97 (80%)

Query: 22  STLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVT 81
           + L+   +QVAHLE+ G YLT+KDNQVV LHPS CLDHKPEWV+YNE+VLTT+N+IRTVT
Sbjct: 623 AMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTTRNFIRTVT 682

Query: 82  DVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
           D++ EWL+ +A  YY+L NFP CEAKR LE L  K E
Sbjct: 683 DIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKRE 719

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 79/97 (81%), Gaps = 3/97 (3%)

Query: 29  LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
           +QVAHLE+ G Y+T+KDNQ+V LHPST LDHKPEW +YNEFVLTTKN+IRTVTDV+PEWL
Sbjct: 643 MQVAHLERSGHYVTVKDNQLVNLHPSTVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWL 702

Query: 89  IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDG 125
           +++APQYY+L NFP  + KR+L  +   M+T Q   G
Sbjct: 703 LQIAPQYYDLDNFPDGDTKRKLTTV---MQTLQRNAG 736

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP43 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 1/92 (1%)

Query: 28  LLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
            +QVA      + Y+T+KDNQ V +HPST L H  EWV+YNEFVLT+KNYIRTVT V+PE
Sbjct: 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPE 716

Query: 87  WLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
           WLI++AP YY+L NF + + K  LE ++ K++
Sbjct: 717 WLIEIAPAYYDLSNFQKGDVKLSLERIKEKVD 748

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 66/91 (72%), Gaps = 2/91 (2%)

Query: 13  NKNYSILFYSTL-SESLLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFV 70
           +KNY +     L S   +QVA    +G+ Y+T+KDNQVV LHPS  L   PEWVVYNEFV
Sbjct: 619 DKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFV 678

Query: 71  LTTKNYIRTVTDVKPEWLIKLAPQYYELQNF 101
           LTTK++IR VT ++PEWLI+LAP YY+L +F
Sbjct: 679 LTTKSFIRNVTAIRPEWLIELAPNYYDLDDF 709

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 57/76 (75%)

Query: 28  LLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEW 87
            +QVA  EK   Y T+ D Q V  HPST L  +PE+ +YNEFVLT++NYIRT+TDVK +W
Sbjct: 625 FMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTSENYIRTITDVKFDW 684

Query: 88  LIKLAPQYYELQNFPQ 103
           L++LAP Y++ ++FP+
Sbjct: 685 LLELAPSYFKQKSFPK 700

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%)

Query: 32   AHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIK 90
            A LEK G + T K NQ VQ+HPS+CL    P+WVVY+E VLTTK ++R + +++  WL +
Sbjct: 1019 AKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHE 1078

Query: 91   LAPQYY------ELQNFPQCEAKRQL 110
            +AP  Y      + Q  P+   K+Q+
Sbjct: 1079 IAPHIYKEKDVNDNQKLPKNIGKKQI 1104

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 40   YLTIKDNQVVQLHPST-CLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
            Y T+ D Q V +HPS+ C   +PEWVVY+E V+TTK Y+R VT + P+WL++ AP ++++
Sbjct: 1099 YRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFKI 1158

Could act late in the splicing of pre-mRNA and mediate the release of the spliced mRNA from spliceosomes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
427788877	729	Putative mrna splicing factor atp-depend	0.904	0.156	0.8	1e-47
346468145	731	hypothetical protein [Amblyomma maculatu	0.904	0.155	0.782	4e-47
340725762	1039	PREDICTED: putative pre-mRNA-splicing fa	0.904	0.109	0.721	1e-45
350397130	1039	PREDICTED: putative pre-mRNA-splicing fa	0.904	0.109	0.721	1e-45
380024559	1039	PREDICTED: putative pre-mRNA-splicing fa	0.904	0.109	0.721	1e-45
328780322	1039	PREDICTED: putative pre-mRNA-splicing fa	0.904	0.109	0.721	1e-45
242010317	723	ATP-dependent RNA helicase, putative [Pe	0.904	0.157	0.739	2e-45
383866382	1039	PREDICTED: putative pre-mRNA-splicing fa	0.904	0.109	0.713	2e-45
195149303	736	GL11162 [Drosophila persimilis] gi|19410	0.904	0.154	0.747	2e-45
125806961	738	GA10763 [Drosophila pseudoobscura pseudo	0.904	0.154	0.747	2e-45

>gi|427788877|gb|JAA59890.1| Putative mrna splicing factor atp-dependent rna helicase [Rhipicephalus pulchellus]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 13  NKNYSILFYSTL-SESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
           +K+Y I    TL S   +QVAHLE+ G YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL
Sbjct: 615 SKDYYINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 674

Query: 72  TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
           TTKNYIRTVTD+KPEWLIK+AP YY++ NFPQCEAKRQLEIL AKMETRQYQ+GF
Sbjct: 675 TTKNYIRTVTDIKPEWLIKIAPNYYDMSNFPQCEAKRQLEILIAKMETRQYQEGF 729

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468145|gb|AEO33917.1| hypothetical protein [Amblyomma maculatum]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 13  NKNYSILFYSTL-SESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
           +K+Y I    TL S   +QVAHLE+ G YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL
Sbjct: 617 SKDYYINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 676

Query: 72  TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
           TTKNYIRTVTD+KPEWL+K+AP YY++ NFPQCEAKRQLE+L AKMETRQYQ+GF
Sbjct: 677 TTKNYIRTVTDIKPEWLVKIAPNYYDMSNFPQCEAKRQLEMLIAKMETRQYQEGF 731

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725762|ref|XP_003401235.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Bombus terrestris]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 13   NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
            +K+Y I     L     +QVAHLE+ G YLTIKDNQ+VQLHPS+CLDHKPEWV+YNEFVL
Sbjct: 925  SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEFVL 984

Query: 72   TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
            TTKNYIRTVTD+KP+WL+K+APQYY+LQNFPQCEAKRQLE++QAK++++QYQ+GF
Sbjct: 985  TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF 1039

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397130|ref|XP_003484779.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Bombus impatiens]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 13   NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
            +K+Y I     L     +QVAHLE+ G YLTIKDNQ+VQLHPS+CLDHKPEWV+YNEFVL
Sbjct: 925  SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEFVL 984

Query: 72   TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
            TTKNYIRTVTD+KP+WL+K+APQYY+LQNFPQCEAKRQLE++QAK++++QYQ+GF
Sbjct: 985  TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF 1039

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024559|ref|XP_003696062.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Apis florea]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 13   NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
            +K+Y I     L     +QVAHLE+ G YLTIKDNQ+VQLHPS+CLDHKPEWV+YNEFVL
Sbjct: 925  SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEFVL 984

Query: 72   TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
            TTKNYIRTVTD+KP+WL+K+APQYY+LQNFPQCEAKRQLE++QAK++++QYQ+GF
Sbjct: 985  TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF 1039

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780322|ref|XP_003249784.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Apis mellifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 13   NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
            +K+Y I     L     +QVAHLE+ G YLTIKDNQ+VQLHPS+CLDHKPEWV+YNEFVL
Sbjct: 925  SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEFVL 984

Query: 72   TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
            TTKNYIRTVTD+KP+WL+K+APQYY+LQNFPQCEAKRQLE++QAK++++QYQ+GF
Sbjct: 985  TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF 1039

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010317|ref|XP_002425915.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212509891|gb|EEB13177.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 13  NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
           +K+Y I     L     +QVAHLEK G YLTIKDNQVVQLHPSTCLDH+PEWV+YNEFVL
Sbjct: 609 SKDYYINIRKALVAGFFMQVAHLEKTGHYLTIKDNQVVQLHPSTCLDHRPEWVIYNEFVL 668

Query: 72  TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
           TTKNYIRTVTD+KP+WL+K+A QYY+L+NFPQCEAKRQLE+LQ+K+E+RQYQ+GF
Sbjct: 669 TTKNYIRTVTDIKPDWLLKIASQYYDLENFPQCEAKRQLELLQSKLESRQYQEGF 723

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866382|ref|XP_003708649.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Megachile rotundata]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 102/115 (88%), Gaps = 1/115 (0%)

Query: 13   NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
            +K+Y I     L     +QVAHLE+ G YLTIKDNQ+VQLHPS+CLDHKPEWV+YNEFVL
Sbjct: 925  SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEFVL 984

Query: 72   TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
            TTKNYIRTVTD+KP+WL+K+APQYY+LQNFPQCEAKRQLE++QA+++++QYQ+GF
Sbjct: 985  TTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQARLDSKQYQEGF 1039

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195149303|ref|XP_002015597.1| GL11162 [Drosophila persimilis] gi|194109444|gb|EDW31487.1| GL11162 [Drosophila persimilis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 98/115 (85%), Gaps = 1/115 (0%)

Query: 13  NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
           +K+Y +     L +   +QVAHLE+ G YLTIKDNQ VQLHPSTCLDHKP+WV+YNEFVL
Sbjct: 622 SKDYYVNIRKALVQGFFMQVAHLERTGHYLTIKDNQNVQLHPSTCLDHKPDWVIYNEFVL 681

Query: 72  TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
           TTKNYIRTVTDVKPEWLI LAPQYY+L NFPQCEAKRQLE+LQ +MET+QYQ GF
Sbjct: 682 TTKNYIRTVTDVKPEWLISLAPQYYDLNNFPQCEAKRQLELLQQRMETKQYQKGF 736

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125806961|ref|XP_001360210.1| GA10763 [Drosophila pseudoobscura pseudoobscura] gi|54635381|gb|EAL24784.1| GA10763 [Drosophila pseudoobscura pseudoobscura]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 98/115 (85%), Gaps = 1/115 (0%)

Query: 13  NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
           +K+Y +     L +   +QVAHLE+ G YLTIKDNQ VQLHPSTCLDHKP+WV+YNEFVL
Sbjct: 624 SKDYYVNIRKALVQGFFMQVAHLERTGHYLTIKDNQNVQLHPSTCLDHKPDWVIYNEFVL 683

Query: 72  TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
           TTKNYIRTVTDVKPEWLI LAPQYY+L NFPQCEAKRQLE+LQ +MET+QYQ GF
Sbjct: 684 TTKNYIRTVTDVKPEWLISLAPQYYDLNNFPQCEAKRQLELLQQRMETKQYQKGF 738

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0033160	729	CG11107 [Drosophila melanogast	0.904	0.156	0.730	7e-43
ZFIN|ZDB-GENE-030131-650	769	dhx15 "DEAH (Asp-Glu-Ala-His)	0.746	0.122	0.787	1.4e-39
UNIPROTKB|F1NHI3	762	DHX15 "Uncharacterized protein	0.746	0.123	0.755	2.2e-38
UNIPROTKB|A5D7D9	795	DHX15 "Uncharacterized protein	0.746	0.118	0.755	2.6e-38
UNIPROTKB|E2R2U3	795	DHX15 "Uncharacterized protein	0.746	0.118	0.755	2.6e-38
UNIPROTKB|O43143	795	DHX15 "Putative pre-mRNA-splic	0.746	0.118	0.755	2.6e-38
UNIPROTKB|F1S5A8	795	DHX15 "Uncharacterized protein	0.746	0.118	0.755	2.6e-38
MGI|MGI:1099786	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.746	0.118	0.755	2.6e-38
RGD|1308072	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.746	0.118	0.755	2.6e-38
TAIR|locus:2065210	729	AT2G47250 [Arabidopsis thalian	0.753	0.130	0.673	1.1e-32

FB|FBgn0033160 CG11107 [Drosophila melanogaster (taxid:7227)]

 Score = 458 (166.3 bits), Expect = 7.0e-43, P = 7.0e-43
 Identities = 84/115 (73%), Positives = 97/115 (84%)

Query:    13 NKNYSILFYSTLSESL-LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVL 71
             +K+Y +     L +   +QVAHLE+ G YLTIKDNQ VQLHPSTCLDHKP+WV+YNEFVL
Sbjct:   615 SKDYYVNIRKALVQGFFMQVAHLERTGYYLTIKDNQNVQLHPSTCLDHKPDWVIYNEFVL 674

Query:    72 TTKNYIRTVTDVKPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQYQDGF 126
             TTKNYIRTVTDVKPEWL  LAPQYY+L NFPQCEAKRQLE+LQ ++ET+QYQ GF
Sbjct:   675 TTKNYIRTVTDVKPEWLCCLAPQYYDLNNFPQCEAKRQLELLQQRLETKQYQKGF 729

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-650 dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Danio rerio (taxid:7955)]

 Score = 429 (156.1 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 74/94 (78%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   673 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 732

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYYE+ NFPQCEAKRQLE + AK++T++Y
Sbjct:   733 VKIAPQYYEMSNFPQCEAKRQLERIVAKLQTKEY 766

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NHI3 DHX15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 418 (152.2 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   666 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 725

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   726 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 759

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

UNIPROTKB|A5D7D9 DHX15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2U3 DHX15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|O43143 DHX15 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15" [Homo sapiens (taxid:9606)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=TAS

GO:0008380 "RNA splicing" evidence=IC

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1S5A8 DHX15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1099786 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Mus musculus (taxid:10090)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1308072 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 71/94 (75%), Positives = 87/94 (92%)

Query:    29 LQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             +QVAHLE+ G YLT+KDNQVVQLHPST LDHKPEWV+YNEFVLTTKNYIRT TD+KPEWL
Sbjct:   699 MQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWL 758

Query:    89 IKLAPQYYELQNFPQCEAKRQLEILQAKMETRQY 122
             +K+APQYY++ NFPQCEAKRQL+ + AK+++++Y
Sbjct:   759 VKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEY 792

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

TAIR|locus:2065210 AT2G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 64/95 (67%), Positives = 77/95 (81%)

Query:    24 LSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDV 83
             L+   +QVAHLE+ G YLT+KDNQVV LHPS CLDHKPEWV+YNE+VLTT+N+IRTVTD+
Sbjct:   625 LAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTTRNFIRTVTDI 684

Query:    84 KPEWLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
             + EWL+ +A  YY+L NFP CEAKR LE L  K E
Sbjct:   685 RGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKRE 719

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20875	DHX15_CAEEL	3, ., 6, ., 4, ., 1, 3	0.6494	0.7460	0.1271	yes	N/A
Q54NJ4	DHX15_DICDI	3, ., 6, ., 4, ., 1, 3	0.5394	0.6031	0.1045	yes	N/A
Q5RAZ4	DHX15_PONAB	3, ., 6, ., 4, ., 1, 3	0.7553	0.7460	0.1182	yes	N/A
O35286	DHX15_MOUSE	3, ., 6, ., 4, ., 1, 3	0.7553	0.7460	0.1182	yes	N/A
P53131	PRP43_YEAST	3, ., 6, ., 4, ., 1, 3	0.5543	0.7222	0.1186	yes	N/A
O43143	DHX15_HUMAN	3, ., 6, ., 4, ., 1, 3	0.7553	0.7460	0.1182	yes	N/A
O22899	DHX15_ARATH	3, ., 6, ., 4, ., 1, 3	0.6597	0.7698	0.1330	yes	N/A
O42945	DHX15_SCHPO	3, ., 6, ., 4, ., 1, 3	0.5714	0.7063	0.1210	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
pfam07717	109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	9e-25
COG1643	845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	2e-09
TIGR01967	1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	4e-07

>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold

 Score = 90.1 bits (224), Expect = 9e-25
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 30  QVAHLEKDGRY-LTIKDNQVVQLHPSTCLDHK--PEWVVYNEFVLTTKNYIRTVTDVKPE 86
            VA L  +     T+K+ Q V +HPS+ L  K  PEWVVY+E V TTK Y+R VT + PE
Sbjct: 41  NVARLVDEKGEYKTLKEGQPVFIHPSSVLFGKKPPEWVVYHELVETTKEYMRDVTAIDPE 100

Query: 87  WLIKLAPQY 95
           WL++LAP Y
Sbjct: 101 WLLELAPHY 109

This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109

>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 24  LSESLLQVAHLEKDGR-YLTIKDNQVVQLHP-STCL-DHKPEWVVYNEFVLTTKNYIR-- 78
            +   L +A L+ DGR Y+T+ DN  V  HP S  L     EW+ Y EF+ T K Y+R  
Sbjct: 624 AAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREG 683

Query: 79  ---------TVTDVKPEWLIKLAP 93
                    T+ ++   WL +   
Sbjct: 684 RGERWPDVQTLIELLKLWLKEQVK 707

Length = 845

>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 15  NYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHK-PEWVVYNEFVLTT 73
           +Y  +  + LS  L Q+   ++   Y   +  +   + P + L  K P+WV+  E V T+
Sbjct: 605 DYDAIHKALLSGLLSQIGMKDEKHEYDGAR-GRKFHIFPGSPLFKKPPKWVMAAELVETS 663

Query: 74  KNYIRTVTDVKPEWLIKLAPQYYELQNF-PQCEAKR 108
           K Y R V  ++PEW+  +A    +   F P  E KR
Sbjct: 664 KLYARLVAKIEPEWVEPVAGHLIKKNYFEPHWEKKR 699

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
KOG0925|consensus	699		99.96
PF07717	114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.95
KOG0922|consensus	674		99.91
KOG0924|consensus	1042		99.89
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	99.83
KOG0923|consensus	902		99.82
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.68
KOG0926|consensus	1172		99.49
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	98.5
KOG0920|consensus	924		98.49
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	98.27
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	96.42
KOG0921|consensus	1282		95.36

>KOG0925|consensus

Probab=99.96  E-value=2.6e-29  Score=210.27  Aligned_cols=111  Identities=66%  Similarity=1.110  Sum_probs=106.9

Q ss_pred             CCCCCCCccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCCCCCCceEEEeeecccccceeeec
Q psy2073           1 MPYQEIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTV   80 (126)
Q Consensus         1 ~~~~~~~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~tsk~y~r~v   80 (126)
                      .|...++|+  +.+++.+|||||++|||++||+...+|+|.++++++.|++||+++|..+|+||+|+|.+.|+++|||.|
T Consensus       573 L~~~st~F~--S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~~N~ir~v  650 (699)
T KOG0925|consen  573 LPLCSTDFG--SRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNFIRTV  650 (699)
T ss_pred             CcccCCCCC--ChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeeccceeeee
Confidence            477889998  889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeChhHHHhhcccccccCCCCchHHHHHHHHH
Q psy2073          81 TDVKPEWLIKLAPQYYELQNFPQCEAKRQLEIL  113 (126)
Q Consensus        81 s~I~~~WL~~~~p~~~~~~~~~~~~~~~~~~~~  113 (126)
                      |.|.|+||.++||+||+.++|+++++|+.|+++
T Consensus       651 t~I~pewlv~laP~YydlsNfp~~e~k~~L~~~  683 (699)
T KOG0925|consen  651 TDIRPEWLVELAPQYYDLSNFPPSEAKRALEQL  683 (699)
T ss_pred             cccCHHHHHHhchhhcccccCCchHHHHHHHHH
Confidence            999999999999999999999999999999964

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)

Probab=99.95  E-value=7.3e-28  Score=166.47  Aligned_cols=82  Identities=38%  Similarity=0.737  Sum_probs=72.1

Q ss_pred             cCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhhc
Q psy2073          14 KNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLA   92 (126)
Q Consensus        14 ~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~~   92 (126)
                      .+++.|++|||+||++|||++.+++.|+++.++..|+|||+|+| +.+|+||||+|++.|+|.|||+||+|+|+||.++|
T Consensus        32 ~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~  111 (114)
T PF07717_consen   32 DQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFA  111 (114)
T ss_dssp             THCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-
T ss_pred             ccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccccccccchhhhheecCCcEEEECcCCCHHHHHHHc
Confidence            67899999999999999999999999999988889999999999 99999999999999999999999999999999999


Q ss_pred             ccc
Q psy2073          93 PQY   95 (126)
Q Consensus        93 p~~   95 (126)
                      |++
T Consensus       112 ~~~  114 (114)
T PF07717_consen  112 PHY  114 (114)
T ss_dssp             TTT
T ss_pred             ccC
Confidence            985

In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.

>KOG0922|consensus

Probab=99.91  E-value=2.6e-25  Score=190.51  Aligned_cols=90  Identities=38%  Similarity=0.716  Sum_probs=84.6

Q ss_pred             CCCccCHHHHHHHHHHhhhhcceeeC-CCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhH
Q psy2073          10 FIYNKNYSILFYSTLSESLLQVAHLE-KDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEW   87 (126)
Q Consensus        10 ~~~~~~~~~I~k~l~sG~~~nvA~~~-~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~W   87 (126)
                      .++..|.+.|++|||+|||.|+|+++ ++| |+++.+++.|+|||||+| ..+|+||||+|+++|+|.|||+||.|+++|
T Consensus       579 ~s~~~d~~~i~k~l~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~w  657 (674)
T KOG0922|consen  579 SSCGGDMEKIRKCLCAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEW  657 (674)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHH
Confidence            57889999999999999999999998 566 999999999999999999 778999999999999999999999999999


Q ss_pred             HHhhcccccccCC
Q psy2073          88 LIKLAPQYYELQN  100 (126)
Q Consensus        88 L~~~~p~~~~~~~  100 (126)
                      |.++||++++...
T Consensus       658 L~e~ap~~~~~~~  670 (674)
T KOG0922|consen  658 LLELAPHFFKQSD  670 (674)
T ss_pred             HHHhCchHhhccc
Confidence            9999999987654

>KOG0924|consensus

Probab=99.89  E-value=4.4e-24  Score=184.11  Aligned_cols=94  Identities=32%  Similarity=0.671  Sum_probs=87.1

Q ss_pred             CCCccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-C-CCCceEEEeeecccccceeeecce
Q psy2073           5 EIPFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-D-HKPEWVVYNEFVLTTKNYIRTVTD   82 (126)
Q Consensus         5 ~~~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~-~~p~wIvy~El~~tsk~y~r~vs~   82 (126)
                      .+|..  |..+|+.|++|||+|||.|+|++.+.|.|.+++++..+++||||+| + ..|+||||+|++.|.++||+|||.
T Consensus       881 ~~~l~--S~~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~  958 (1042)
T KOG0924|consen  881 KLPLI--SSDDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTS  958 (1042)
T ss_pred             CCCcc--cCchHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhh
Confidence            34553  4599999999999999999999999999999999999999999999 5 499999999999999999999999


Q ss_pred             eChhHHHhhcccccccCC
Q psy2073          83 VKPEWLIKLAPQYYELQN  100 (126)
Q Consensus        83 I~~~WL~~~~p~~~~~~~  100 (126)
                      |+|+||.+++|-||...+
T Consensus       959 v~~~wl~E~gp~~y~ik~  976 (1042)
T KOG0924|consen  959 VSPEWLAELGPMFYSIKE  976 (1042)
T ss_pred             CCHHHHHHhCceeEeccc
Confidence            999999999999997664

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=99.83  E-value=4.5e-21  Score=175.08  Aligned_cols=92  Identities=21%  Similarity=0.385  Sum_probs=83.1

Q ss_pred             CccCHHHHHHHHHHhhhhcceeeCCCC-CeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHH
Q psy2073          12 YNKNYSILFYSTLSESLLQVAHLEKDG-RYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI   89 (126)
Q Consensus        12 ~~~~~~~I~k~l~sG~~~nvA~~~~~~-~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~   89 (126)
                      ++.+++.|++|||+|||.|+|++..++ .|.+.+ +..++|||+|+| +++|+||||+|++.|+|.|||+|+.|+|+||.
T Consensus       611 ~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~  689 (1294)
T PRK11131        611 EPAEYREIHTALLTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIE  689 (1294)
T ss_pred             CcccHHHHHHHHHhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHH
Confidence            356899999999999999999998765 487776 788999999999 88999999999999999999999999999999


Q ss_pred             hhcccccccCCCCch
Q psy2073          90 KLAPQYYELQNFPQC  104 (126)
Q Consensus        90 ~~~p~~~~~~~~~~~  104 (126)
                      ++||++|+.+.+++.
T Consensus       690 ~~a~~l~~~~y~ePh  704 (1294)
T PRK11131        690 PLAQHLIKRSYSEPH  704 (1294)
T ss_pred             HHHHHhccccCCCCc
Confidence            999999987766543

>KOG0923|consensus

Probab=99.82  E-value=5.6e-21  Score=164.48  Aligned_cols=95  Identities=36%  Similarity=0.740  Sum_probs=88.6

Q ss_pred             ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhh
Q psy2073          13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKL   91 (126)
Q Consensus        13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~   91 (126)
                      ..+...||+|+.+|||+|+|++.++|+|+++...+.|++||.|+| ...|.||||+||+.|++.|||.++.|+++||.++
T Consensus       798 ~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~  877 (902)
T KOG0923|consen  798 QNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEV  877 (902)
T ss_pred             hHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHh
Confidence            346789999999999999999999999999999999999999999 8899999999999999999999999999999999


Q ss_pred             cccccccCCCCchHHH
Q psy2073          92 APQYYELQNFPQCEAK  107 (126)
Q Consensus        92 ~p~~~~~~~~~~~~~~  107 (126)
                      |||||+.+++.+...+
T Consensus       878 aphyyk~kdled~~~k  893 (902)
T KOG0923|consen  878 APHYYKLKDLEDATNK  893 (902)
T ss_pred             chhhhhhhhccccccc
Confidence            9999998887766544

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=99.68  E-value=6.1e-17  Score=148.40  Aligned_cols=86  Identities=26%  Similarity=0.473  Sum_probs=79.4

Q ss_pred             ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHHhh
Q psy2073          13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKL   91 (126)
Q Consensus        13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~~   91 (126)
                      +.+++.|++||++||+.|||++..++.|.+.+ ++.++|||+|+| +++|+||||.|++.|++.|||+|+.|+|+||.++
T Consensus       603 ~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~-g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~  681 (1283)
T TIGR01967       603 PADYDAIHKALLSGLLSQIGMKDEKHEYDGAR-GRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPV  681 (1283)
T ss_pred             CccHHHHHHHHHHhhHHHHheeCCCCcEEecC-CcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHH
Confidence            45678899999999999999998878899886 678999999999 8889999999999999999999999999999999


Q ss_pred             cccccccC
Q psy2073          92 APQYYELQ   99 (126)
Q Consensus        92 ~p~~~~~~   99 (126)
                      +|++++.+
T Consensus       682 ~~~~~~~~  689 (1283)
T TIGR01967       682 AGHLIKKN  689 (1283)
T ss_pred             hHHHhEec
Confidence            99998765

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>KOG0926|consensus

Probab=99.49  E-value=1e-14  Score=128.26  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=83.8

Q ss_pred             CccCCCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceee-ecceeC
Q psy2073           7 PFGFIYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIR-TVTDVK   84 (126)
Q Consensus         7 ~f~~~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r-~vs~I~   84 (126)
                      ...+|++.+...+|+.|||||.++||++.+-..|.+..-+..++|||+|+| .+.|+||+|.|++.|++.||. +++.|+
T Consensus       931 ~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~ 1010 (1172)
T KOG0926|consen  931 TLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVR 1010 (1172)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEc
Confidence            456788899999999999999999999887777988888889999999999 999999999999999887654 599999


Q ss_pred             hhHHHhhcccccccCC
Q psy2073          85 PEWLIKLAPQYYELQN  100 (126)
Q Consensus        85 ~~WL~~~~p~~~~~~~  100 (126)
                      |+||+..++.+|-+++
T Consensus      1011 pewl~~~~~slcn~~e 1026 (1172)
T KOG0926|consen 1011 PEWLLNHAKSLCNFSE 1026 (1172)
T ss_pred             hHHHHhhhhhhccccc
Confidence            9999999998776553

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=98.50  E-value=2.6e-07  Score=82.80  Aligned_cols=82  Identities=12%  Similarity=0.127  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCCCCCCceEEEeeecccc-cc--eeeecceeChhHHHhh
Q psy2073          15 NYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTT-KN--YIRTVTDVKPEWLIKL   91 (126)
Q Consensus        15 ~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~ts-k~--y~r~vs~I~~~WL~~~   91 (126)
                      +.+.+.+||++||+++||++..++.+..+.+|+.+.+||+|.|.. .+|+++.|+..++ +.  .|+.+++|+++||.+.
T Consensus       487 ~~~~~~~~la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~-~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~  565 (812)
T PRK11664        487 DSSLIAPLLALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSR-HEWLIAPLLLQGSASPDARILLALPLDIDELVQR  565 (812)
T ss_pred             ChHHHHHHHHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccC-CCeEEEEEhhccCccccceeeEeeccCHHHHHHH
Confidence            344588999999999999977654456777899999999999932 3999999997663 33  4778999999999999


Q ss_pred             cccccc
Q psy2073          92 APQYYE   97 (126)
Q Consensus        92 ~p~~~~   97 (126)
                      +++.+.
T Consensus       566 ~~~~~~  571 (812)
T PRK11664        566 CPQLVQ  571 (812)
T ss_pred             HHHhce
Confidence            987764

>KOG0920|consensus

Probab=98.49  E-value=2.1e-07  Score=83.86  Aligned_cols=84  Identities=18%  Similarity=0.259  Sum_probs=67.5

Q ss_pred             CccCHHHHHHHHHHhhhhcceeeCC---CCC---eEeeecCcEEEEcCCCCC-C---CCCceEEEeeeccccc-ceeeec
Q psy2073          12 YNKNYSILFYSTLSESLLQVAHLEK---DGR---YLTIKDNQVVQLHPSTCL-D---HKPEWVVYNEFVLTTK-NYIRTV   80 (126)
Q Consensus        12 ~~~~~~~I~k~l~sG~~~nvA~~~~---~~~---Y~~~~~~~~v~IHPsS~L-~---~~p~wIvy~El~~tsk-~y~r~v   80 (126)
                      +..+.+.++.+||+|+++|+|+...   ...   |.+-. ...++|||+|+. +   ....|++|.|.+.|++ .|+|++
T Consensus       754 ~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~-~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~  832 (924)
T KOG0920|consen  754 NSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKA-DGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDT  832 (924)
T ss_pred             cCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCC-ceeEEEecchhhccccccCCcceEEeeecccCCcceeeec
Confidence            4677899999999999999998774   222   22222 247999999999 2   2334999999999999 999999


Q ss_pred             ceeChhHHHhhccccc
Q psy2073          81 TDVKPEWLIKLAPQYY   96 (126)
Q Consensus        81 s~I~~~WL~~~~p~~~   96 (126)
                      |.|.+.-++.+++...
T Consensus       833 T~v~~~~~llfgg~~~  848 (924)
T KOG0920|consen  833 TSVSSSALLLFGGGIS  848 (924)
T ss_pred             CCCCcHHheeecCCce
Confidence            9999999998888544

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=98.27  E-value=9.8e-08  Score=85.60  Aligned_cols=79  Identities=34%  Similarity=0.537  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHhhhhcceeeCCCCC-eEeeecCcEEEEcCCC-CC-CCCCceEEEeeecccccceee-----------ec
Q psy2073          15 NYSILFYSTLSESLLQVAHLEKDGR-YLTIKDNQVVQLHPST-CL-DHKPEWVVYNEFVLTTKNYIR-----------TV   80 (126)
Q Consensus        15 ~~~~I~k~l~sG~~~nvA~~~~~~~-Y~~~~~~~~v~IHPsS-~L-~~~p~wIvy~El~~tsk~y~r-----------~v   80 (126)
                      .|+.+++|+++|+..|++.+..++. |.++.++..+++||+| .+ ...++|++|++.+.|++.|++           ++
T Consensus       615 ~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  694 (845)
T COG1643         615 IWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRTRKGYLREGRGERWPDVQTL  694 (845)
T ss_pred             hHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHHHHHHHHHhhcccccCcccchH
Confidence            5799999999999999999998776 9999999999999999 55 789999999999999999999           69


Q ss_pred             ceeChhHHHhhcc
Q psy2073          81 TDVKPEWLIKLAP   93 (126)
Q Consensus        81 s~I~~~WL~~~~p   93 (126)
                      +++..+||.+.++
T Consensus       695 ~~~~~~wL~~~~~  707 (845)
T COG1643         695 IELLKLWLKEQVK  707 (845)
T ss_pred             hhhHHHhhhhhcc
Confidence            9999999999888

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=96.42  E-value=0.0069  Score=54.84  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             HHHHHHHhhhhcceeeCCC-CCeEeeecCcEEEEcCCCCC-CCCCceEEEeeeccc---ccceeeecceeChhHHHhhcc
Q psy2073          19 LFYSTLSESLLQVAHLEKD-GRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLT---TKNYIRTVTDVKPEWLIKLAP   93 (126)
Q Consensus        19 I~k~l~sG~~~nvA~~~~~-~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~t---sk~y~r~vs~I~~~WL~~~~p   93 (126)
                      +-.+|+.+|.++||++..+ +.| .+.+|+.+.+++.|.| +.  +|++-.|+..+   ....++.++.|+++||...++
T Consensus       498 ~g~lla~a~pdria~~r~~~~~y-~l~~G~~~~l~~~~~l~~~--~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~  574 (819)
T TIGR01970       498 LGLLLALAFPDRIAKRRGQPGRY-QLANGRGAVLSAEDALARE--PWLVAADLGEGQGKTAARILLAAPVDEALLRQVLP  574 (819)
T ss_pred             HhHHHhhhChHhheeccCCCCeE-ECCCCCeeEeCCCCcccCC--CeEEEEEeeccCCccccceeeeccCCHHHHHHHhH
Confidence            6679999999999997654 446 4556888999999999 54  99999999634   234688999999999999888


Q ss_pred             ccc
Q psy2073          94 QYY   96 (126)
Q Consensus        94 ~~~   96 (126)
                      +.+
T Consensus       575 ~~~  577 (819)
T TIGR01970       575 DLV  577 (819)
T ss_pred             HHc
Confidence            654

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>KOG0921|consensus

Probab=95.36  E-value=0.019  Score=52.68  Aligned_cols=83  Identities=14%  Similarity=0.179  Sum_probs=65.5

Q ss_pred             ccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC--------CCCCceEEEeeecccccceeeecceeC
Q psy2073          13 NKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL--------DHKPEWVVYNEFVLTTKNYIRTVTDVK   84 (126)
Q Consensus        13 ~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L--------~~~p~wIvy~El~~tsk~y~r~vs~I~   84 (126)
                      +.+....+..||.++++|+|......+-.|+..+. ..||-+|++        +.+..+.||.|.+.|.-.=.+..|.|.
T Consensus       982 d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~-alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVs 1060 (1282)
T KOG0921|consen  982 DRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSS-ALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVS 1060 (1282)
T ss_pred             CchhHHHHHHHHhhcCCccceeccceeEEeecchh-hhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccC
Confidence            44566789999999999999988776666665444 567767666        235689999999999888899999999


Q ss_pred             hhHHHhhccccc
Q psy2073          85 PEWLIKLAPQYY   96 (126)
Q Consensus        85 ~~WL~~~~p~~~   96 (126)
                      |..|+-+|..-.
T Consensus      1061 PLQLLLF~SrKV 1072 (1282)
T KOG0921|consen 1061 PLQLLLFGSRKV 1072 (1282)
T ss_pred             hHHHhhhhhhhc
Confidence            999998877533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		1e-25
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		1e-25
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		9e-14

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 28  LLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
            +QVA      + Y+T+KDNQ V +HPST L H  EWV+YNEFVLT+KNYIRTVT V+PE
Sbjct: 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPE 716
Query: 87  WLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
           WLI++AP YY+L NF + + K  LE ++ K++
Sbjct: 717 WLIEIAPAYYDLSNFQKGDVKLSLERIKEKVD 748

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 28  LLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
            +QVA      + Y+T+KDNQ V +HPST L H  EWV+YNEFVLT+KNYIRTVT V+PE
Sbjct: 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPE 716
Query: 87  WLIKLAPQYYELQNFPQCEAKRQLEILQAKME 118
           WLI++AP YY+L NF + + K  LE ++ K++
Sbjct: 717 WLIEIAPAYYDLSNFQKGDVKLSLERIKEKVD 748

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 40  YLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIKLAPQYYEL 98
           Y T+ D QVV +HPS+ L + +PEWVVY+E VLTTK Y+R VT + P WL++ AP ++++
Sbjct: 190 YRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKV 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	7e-40
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	4e-38

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score =  139 bits (353), Expect = 7e-40
 Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 1/95 (1%)

Query: 28  LLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPE 86
            +QVA      + Y+T+KDNQ V +HPST L H  EWV+YNEFVLT+KNYIRTVT V+PE
Sbjct: 657 FMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPE 716

Query: 87  WLIKLAPQYYELQNFPQCEAKRQLEILQAKMETRQ 121
           WLI++AP YY+L NF + + K  LE ++ K++   
Sbjct: 717 WLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLN 751

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score =  128 bits (324), Expect = 4e-38
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 30  QVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWL 88
             A  +    Y T+ D QVV +HPS+ L + +PEWVVY+E VLTTK Y+R VT + P WL
Sbjct: 180 NAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWL 239

Query: 89  IKLAPQYYELQNF-PQCEAKRQLEI 112
           ++ AP ++++     Q +       
Sbjct: 240 VEFAPAFFKVLEVDLQGDHGLSAWS 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	99.95
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.89

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=187.00  Aligned_cols=93  Identities=37%  Similarity=0.665  Sum_probs=85.0

Q ss_pred             CCccCHHHHHHHHHHhhhhcceeeCCCCCeEeeecCcEEEEcCCCCC-CCCCceEEEeeecccccceeeecceeChhHHH
Q psy2073          11 IYNKNYSILFYSTLSESLLQVAHLEKDGRYLTIKDNQVVQLHPSTCL-DHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLI   89 (126)
Q Consensus        11 ~~~~~~~~I~k~l~sG~~~nvA~~~~~~~Y~~~~~~~~v~IHPsS~L-~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~   89 (126)
                      +++.+++.|++|||+|||+|||++.+++.|+++.+++.|+|||||+| +.+|+||||+|++.|+|.|||+||.|+|+||.
T Consensus       161 s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~  240 (270)
T 3i4u_A          161 SCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLV  240 (270)
T ss_dssp             CCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHH
T ss_pred             CCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHH
Confidence            34667899999999999999999999999999999999999999999 88999999999999999999999999999999


Q ss_pred             hhcccccccCCCCc
Q psy2073          90 KLAPQYYELQNFPQ  103 (126)
Q Consensus        90 ~~~p~~~~~~~~~~  103 (126)
                      +++|++|+..+++.
T Consensus       241 ~~ap~~~~~~~~~~  254 (270)
T 3i4u_A          241 EFAPAFFKVLEVDL  254 (270)
T ss_dssp             HHCTTTEECC----
T ss_pred             HHhHHHhccccccc
Confidence            99999999887754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.89  E-value=3.1e-23  Score=181.04  Aligned_cols=110  Identities=48%  Similarity=0.815  Sum_probs=99.3

Q ss_pred             CccCHHHHHHHHHHhhhhcceeeCCCCC-eEeeecCcEEEEcCCCCCCCCCceEEEeeecccccceeeecceeChhHHHh
Q psy2073          12 YNKNYSILFYSTLSESLLQVAHLEKDGR-YLTIKDNQVVQLHPSTCLDHKPEWVVYNEFVLTTKNYIRTVTDVKPEWLIK   90 (126)
Q Consensus        12 ~~~~~~~I~k~l~sG~~~nvA~~~~~~~-Y~~~~~~~~v~IHPsS~L~~~p~wIvy~El~~tsk~y~r~vs~I~~~WL~~   90 (126)
                      +..+++.|++|||+|||+|||++.++|. |.++.+++.|+|||+|+|..+|+||||+|++.|++.|||+||.|+|+||.+
T Consensus       641 ~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~  720 (773)
T 2xau_A          641 SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIE  720 (773)
T ss_dssp             STTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESSSEEEEEEEECCHHHHHH
T ss_pred             chhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccCCCCCEEEEEEeeccchhheeecccCCHHHHHH
Confidence            3456789999999999999999998886 999999999999999999656999999999999999999999999999999


Q ss_pred             hcccccccCCCCchHHHHHHHHHHHHHHhhh
Q psy2073          91 LAPQYYELQNFPQCEAKRQLEILQAKMETRQ  121 (126)
Q Consensus        91 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (126)
                      ++|++|+..+++.+++++.++.+.+++++++
T Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (773)
T 2xau_A          721 IAPAYYDLSNFQKGDVKLSLERIKEKVDRLN  751 (773)
T ss_dssp             HCTTTSCGGGCCSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHheeeccCCchhHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999988887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00