Psyllid ID: psy2110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620--
Protein Sequence
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFDIQLEGAACQGIGIILPTGVNLE
Secondary Structure (PSIPRED)
cccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEEEccccEEEEEccccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEccccccccEEccccccccEEccccccccEEEEEEcccccEEEEccccccEEEEEccccccEEEccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccEEEEEccccEEEEEEcccccEEcccccEEEEEccccEEEEEEcccccEEEcccccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccEcccccccc
Coil and Loop (DISEMBL)
sdlsivasfdrrgqhvvtgnskGKVLVLSCpalelkasrgncllvntGDRLIRVYNHqevlnagkdgdpepiqKLQDLVNKTMwkkccfsgdgeyvcagsARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAhmhpefdgaLDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAhmhpvcsiswsrngyKIISastdnnvcIWDVLtgeceqkyrfpspilkvqfhprndhmflvcpmrHAAVlvdtdgdhqivpidedsdlsivasfdrrgqhvvtgnskGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHqevlnagkdgdpepiqKLQDLVNKTMwkkccfsgdgeyvcagsARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVenwsafapdfkeldenveyderesefdisdedksvaqgsddqdeeleidvtsvepvaafcssdeevddskvleflpiapdvedpedgpgstsapvtssppskttkyksfdIQLEGAACQgigiilptgvnle
Flexible Loop (DISEMBL)
sdlsivasfdrrgqhvvtgnskgkvLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVlnagkdgdpepIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRgqhvvtgnskgkvLVLSCPALELKASFKASTTAIksiefarrgncLLVNTGDRLIRVYNHQEVlnagkdgdpepIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDEResefdisdedksvaqgsddqdeeLEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPdvedpedgpgstsapvtssppskTTKYKSFDIQLEGAACQGIGIILPTGVNLE
Low Complexity Region (SEG)
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGpgstsapvtssppskttkyksFDIQLEGAACQGIGIILPTGVNLE
Disordered region (IsUnstruct)
************GQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAG*******IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG************************HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAG*******IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFK********************************************VAAFC*************F*********************************SFDIQLEGAACQGIGIILPTG****
Disordered Region (DISOPRED)
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIA********************************IQLEGAACQGIGI*********
Disordered Region (DISEMBL)
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVE****************************EIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVE**********************KYKSFDIQLEGAACQGIGIILPTGVNLE
Disordered Region (DISPRO)
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDP****G*****************************************LE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFDIQLEGAACQGIGIILPTGVNLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	622	2.2.26 [Sep-21-2011]
Q8BX09	538	Retinoblastoma-binding pr	yes	N/A	0.672	0.776	0.665	1e-176
Q15291	538	Retinoblastoma-binding pr	yes	N/A	0.631	0.730	0.717	1e-176
Q09309	454	Uncharacterized WD repeat	yes	N/A	0.602	0.825	0.419	2e-79
O42858	398	Set1 complex component sw	yes	N/A	0.511	0.798	0.344	1e-48
P39706	426	COMPASS component SWD1 OS	yes	N/A	0.493	0.720	0.302	4e-30
Q8YTC2	1258	Uncharacterized WD repeat	yes	N/A	0.672	0.332	0.225	6e-15
Q9BQ87	522	F-box-like/WD repeat-cont	no	N/A	0.488	0.582	0.232	7e-15
Q4R8H1	569	F-box-like/WD repeat-cont	N/A	N/A	0.512	0.560	0.237	2e-14
Q9BZK7	514	F-box-like/WD repeat-cont	no	N/A	0.512	0.620	0.242	3e-14
O60907	577	F-box-like/WD repeat-cont	no	N/A	0.488	0.526	0.238	3e-14

>sp|Q8BX09|RBBP5_MOUSE Retinoblastoma-binding protein 5 OS=Mus musculus GN=Rbbp5 PE=1 SV=2

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/448 (66%), Positives = 367/448 (81%), Gaps = 30/448 (6%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct: 16  EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct: 76  RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query: 306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
             +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct: 136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query: 360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
           ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct: 196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query: 420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
           KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct: 256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query: 480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKS-VAQGSDDQDEELEI 538
           GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS   Q   D  E+ E+
Sbjct: 316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEV 375

Query: 539 DVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED---GPGSTSAPVT--------- 586
           DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+   GP   + P +         
Sbjct: 376 DVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPPDAVPSSLMDEGASSE 435

Query: 587 ---------SSPPSKTTKYKSFDIQLEG 605
                    S PP K  K K+ +I+L+G
Sbjct: 436 KKRQSSADGSQPPKK--KPKTTNIELQG 461

As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation.
Mus musculus (taxid: 10090)

>sp|Q15291|RBBP5_HUMAN Retinoblastoma-binding protein 5 OS=Homo sapiens GN=RBBP5 PE=1 SV=2

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 287/400 (71%), Positives = 350/400 (87%), Gaps = 7/400 (1%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct: 16  EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct: 76  RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query: 306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
             +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct: 136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query: 360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
           ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct: 196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query: 420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
           KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct: 256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query: 480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKS-VAQGSDDQDEELEI 538
           GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS   Q   D  E+ E+
Sbjct: 316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEV 375

Query: 539 DVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGP 578
           DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+ P
Sbjct: 376 DVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENP 415

As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q09309|YQS1_CAEEL Uncharacterized WD repeat-containing protein F21H12.1 OS=Caenorhabditis elegans GN=F21H12.1 PE=4 SV=3

 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 165/393 (41%), Positives = 240/393 (61%), Gaps = 18/393 (4%)

Query: 200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
           C FN+ G+++AVGC DGR++++DF+TR IA+  SAH  PV  +SWSR+G K++++S DN+
Sbjct: 31  CKFNRWGSIVAVGCTDGRVLIYDFMTRNIARTFSAHCLPVSCLSWSRDGRKLLTSSADNS 90

Query: 260 VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV----- 314
           + ++DVL G    + RF S +    FHPRND+  +V  +     +       Q V     
Sbjct: 91  IAMFDVLAGTLLHRIRFNSMVTFAMFHPRNDNKAIVLQVNKQPTVEQFSPRIQTVLANDT 150

Query: 315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARR 373
           P   D   S V S+DR+G++++ G  KGK+L+ +   L+  A  K +T   I+ I    +
Sbjct: 151 PGSSDESASCV-SYDRKGKYIIAGTGKGKLLIYNAETLKCVAWCKQNTVQQIRQIIVPMK 209

Query: 374 GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG 433
              ++ NT DR+IR Y  +++L+  +    E   K+ D+VNK  WK  C   DG YVC  
Sbjct: 210 SRFIITNTQDRVIRTYELEDLLHQ-RGQMVEAKYKVLDMVNKAAWKNVCTDSDGLYVCGA 268

Query: 434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENW 493
           S + H+LYIWE + G+L+KILHG KGE LLDV WHP RPII SI+ G VS+W Q  VENW
Sbjct: 269 STKAHSLYIWESNTGSLIKILHGNKGEALLDVQWHPTRPIILSIAQGTVSMWTQAHVENW 328

Query: 494 SAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELE-IDVTSVEPVAAFCSS 552
           SAFAP+F+EL+EN +Y E+E+EFD+ DED      S  QD E + IDV +V P     SS
Sbjct: 329 SAFAPEFQELEENEKYIEKENEFDMEDEDADEDMTSKSQDAEDDIIDVVNVRPEDYLASS 388

Query: 553 DEE----VDDSKVLE-----FLPIAPDVEDPED 576
           DEE    +  ++ LE     ++P+  D+E+ ++
Sbjct: 389 DEEDCNIMKPARNLESGPLWYIPVPLDIENADN 421

Caenorhabditis elegans (taxid: 6239)

>sp|O42858|SWD1_SCHPO Set1 complex component swd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd1 PE=3 SV=2

 Score =  194 bits (494), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 192/343 (55%), Gaps = 25/343 (7%)

Query: 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST 256
           A +  F+  G  LA G  +G +V+WD  T  ++++++ H   + S+ WS     +++AS 
Sbjct: 27  ATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSSCDRFLLTASR 86

Query: 257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG---DHQI 313
           D    +WD+  G    +    +P+     HP   + F+   +  +  L+  D     H+ 
Sbjct: 87  DWKCILWDLRDGSIVYQVVLSAPVWSASLHPHKINTFVASLLDESPQLIIVDDGIPKHKY 146

Query: 314 VPIDEDSD------------LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS 361
           +P + D D            +++V+ F   G+++++G SKG   V+     ++++S + +
Sbjct: 147 LPTNPDIDENYSDRRNRSKHVTLVSFFHPSGEYILSGTSKGWFHVIDASTTKIRSSHRIT 206

Query: 362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC 421
           + +IK I  +     L+ N+ DR+IR  + Q++ N      PE   K QD+VN+  W  C
Sbjct: 207 SQSIKQIRLSFCKRFLIFNSTDRVIRTVSIQDLDN------PEVEHKFQDVVNRLQWNSC 260

Query: 422 CFSGDGEYVCAGSARQ-HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-- 478
            FS  GE+V A + +  HA+Y+WE+ +G+LVKIL G K EL+ DV WHPV P +AS+   
Sbjct: 261 GFSQTGEFVFATTYQMAHAIYVWERGMGSLVKILEGPKEELV-DVDWHPVFPCVASVGLD 319

Query: 479 SGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDE 521
           SG + +WA  Q E+WSAFAPDF+EL+EN+EY+E E EFDI DE
Sbjct: 320 SGSIYIWAVEQKESWSAFAPDFQELEENIEYEEPEDEFDIHDE 362

The Set1 complex specifically methylates 'Lys-4' of histone H3.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWD1 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 173/354 (48%), Gaps = 47/354 (13%)

Query: 202 FNKRGTLLAVGCNDGRIVLWDFLT-RGI---AKIISAHMHPVCSISWSRNGYKIISASTD 257
           F+  G  LA+GC +G +V++D  T R I     ++ AH+ P+ SI+WS +G  ++++S D
Sbjct: 34  FSPCGDYLALGCANGALVIYDMDTFRPICVPGNMLGAHVRPITSIAWSPDGRLLLTSSRD 93

Query: 258 NNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
            ++ +WD+    +  ++ RF SPI   Q+        L    R     +  + D  ++  
Sbjct: 94  WSIKLWDLSKPSKPLKEIRFDSPIWGCQW--------LDAKRRLCVATIFEESDAYVIDF 145

Query: 317 DEDSDLSIVASFDRR-----------------GQH---VVTGNSKGKVLVLSCPAL---E 353
             D   S+++  D +                  +H   ++ G SKG +      +L   E
Sbjct: 146 SNDPVASLLSKSDEKQLSSTPDHGYVLVCTVHTKHPNIIIVGTSKGWLDFYKFHSLYQTE 205

Query: 354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI--QKLQD 411
              S K +++ IK +  ++ G  L +N  DR IR Y   E+    ++   E     K QD
Sbjct: 206 CIHSLKITSSNIKHLIVSQNGERLAINCSDRTIRQY---EISIDDENSAVELTLEHKYQD 262

Query: 412 LVNKTMWKKCCFSGD-GEYVCAGS--ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH 468
           ++NK  W    FS +  EY+ A +  +  H LYIWE + G LV++L G + EL+ D+ W 
Sbjct: 263 VINKLQWNCILFSNNTAEYLVASTHGSSAHELYIWETTSGTLVRVLEGAEEELI-DINWD 321

Query: 469 PVRPIIAS--ISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISD 520
                I S    SG V +W+      WSA APDF+E++ENV+Y E+E EFD  D
Sbjct: 322 FYSMSIVSNGFESGNVYVWSVVIPPKWSALAPDFEEVEENVDYLEKEDEFDEVD 375

The COMPASS (Set1C) complex specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 114/506 (22%), Positives = 195/506 (38%), Gaps = 88/506 (17%)

Query: 40   GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC-CFSGDGEYVCA 98
            G  L   +GD+ I++++ Q       DG       LQ L   T W +C  FS DG  + A
Sbjct: 738  GETLASASGDKTIKLWDIQ-------DGTC-----LQTLTGHTDWVRCVAFSPDGNTL-A 784

Query: 99   GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL------------------DC 140
             SA  H + +W+ S G  ++ L    G +       DG                    +C
Sbjct: 785  SSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGEC 844

Query: 141  ISLAV-------TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP------EF 187
            +   +       + A++    +L  G  D  I LWD  T    K +  H +         
Sbjct: 845  LKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSP 904

Query: 188  DG-ALDCISL------------------------AVTCAFNKRGTLLAVGCNDGRIVLWD 222
            DG  L C+SL                        A+  AF+    +LA G ND  + LWD
Sbjct: 905  DGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWD 964

Query: 223  FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ-KYRFPSPIL 281
            + T      +  H   +  I++S +   + SASTD++V +W++ TG+C Q        + 
Sbjct: 965  WQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVY 1024

Query: 282  KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK 341
             V FHP+   +           L +      +  + E SD  +  ++   GQ + + ++ 
Sbjct: 1025 AVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDGQLLASASAD 1083

Query: 342  GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG 401
              V +  C         +  +  + S  F+  G  +   + D+ +++++ Q+    GK  
Sbjct: 1084 QSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQ----GK-- 1137

Query: 402  DPEPIQKLQDLVNKTMWK-KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE 460
                   L+ L   T W     FS DG+ + A ++    + IW+ + G    I  G    
Sbjct: 1138 ------CLKTLTGHTNWVFDIAFSPDGK-ILASASHDQTVRIWDVNTGKCHHICIG-HTH 1189

Query: 461  LLLDVVWHPVRPIIASISS-GVVSLW 485
            L+  V + P   ++AS S    V +W
Sbjct: 1190 LVSSVAFSPDGEVVASGSQDQTVRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 138/336 (41%), Gaps = 32/336 (9%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFN 203
           CA+N    LLA G  D    +W+       G  +++  H   E    +       +  +N
Sbjct: 185 CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWN 244

Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
             GTLLA+G  DG   +W      +A  +  H  P+ ++ W++ G  ++SA  D    IW
Sbjct: 245 SDGTLLAMGSYDGFARIWT-ENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIW 303

Query: 264 DVLTGECEQKYRFPS-PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
           D  TGE +Q++ F S P L V +  +N+  F  C       +     DH +      ++ 
Sbjct: 304 DAHTGEAKQQFPFHSAPALDVDW--QNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNE 361

Query: 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNC------ 376
                +D  G  + + +    + + S          +A +  I +I+++  G        
Sbjct: 362 VNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNS 421

Query: 377 ---LLVNTGDRLIRVYN-HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 432
              L   + D  +R+++  Q V         EP+  +             FS DG+Y+ +
Sbjct: 422 SIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSV------------AFSPDGKYLAS 469

Query: 433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH 468
           GS  ++ ++IW    G+LV    GT G  + +V W+
Sbjct: 470 GSFDKY-VHIWNTQSGSLVHSYQGTGG--IFEVCWN 502

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

>sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 143/362 (39%), Gaps = 43/362 (11%)

Query: 132 VEFDGALDCISLAVT-----------CAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAK 177
           +E DG +D  S   T           CA+N    LLA G  D    +W+       G  +
Sbjct: 204 MEIDGEVDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQ 263

Query: 178 IISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH 237
           ++  H   E    +       +  +N  GTLLA G  DG   +W      +A  +  H  
Sbjct: 264 LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWT-EDGNLASTLGQHKG 322

Query: 238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS-PILKVQFHPRNDHMFLVC 296
           P+ ++ W+R G  I+SA  D    IWD  TGE +Q++ F S P L V +  +N+  F  C
Sbjct: 323 PIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDW--QNNMTFASC 380

Query: 297 PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA 356
                  +     D  +      ++      +D  G  + + +    + + S        
Sbjct: 381 STDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIH 440

Query: 357 SFKASTTAIKSIEFARRG--------NCLLVNTG-DRLIRVYN-HQEVLNAGKDGDPEPI 406
             +A    I +I+++  G        N +L +   D  +R+++  + V         EP+
Sbjct: 441 DLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPV 500

Query: 407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVV 466
             +             FS DG Y+ +GS  +  ++IW    GNLV    GT G  + +V 
Sbjct: 501 YSV------------AFSPDGRYLASGSFDK-CVHIWNTQSGNLVHSYRGTGG--IFEVC 545

Query: 467 WH 468
           W+
Sbjct: 546 WN 547

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Macaca fascicularis (taxid: 9541)

>sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 139/350 (39%), Gaps = 31/350 (8%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFL---TRGIAKIISAHMHPEFDGALDCISLAVTCAFN 203
           CA+N    LLA G  D    +W+     T G  +++  H   E    +       +  +N
Sbjct: 175 CAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWN 234

Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
             GTLLA G  DG   +W      +A  +  H  P+ ++ W++ G  I+SA  D    IW
Sbjct: 235 SEGTLLATGSYDGFARIWT-KDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIW 293

Query: 264 DVLTGECEQKYRFPS-PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
           D  TGE +Q++ F S P L V +   N   F  C       +     D  I      ++ 
Sbjct: 294 DAHTGEAKQQFPFHSAPALDVDWQSNN--TFASCSTDMCIHVCKLGQDRPIKTFQGHTNE 351

Query: 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-------- 374
                +D  G  + + +    + + S          +A    I +I+++  G        
Sbjct: 352 VNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNA 411

Query: 375 NCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG 433
           N +L +   D  +R+++    +          + K Q+ V         FS DG Y+ +G
Sbjct: 412 NLMLASASFDSTVRLWDVDRGICI------HTLTKHQEPV-----YSVAFSPDGRYLASG 460

Query: 434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV-RPIIASISSGVV 482
           S  +  ++IW    G LV    GT G  + +V W+     + AS S G V
Sbjct: 461 SFDK-CVHIWNTQTGALVHSYRGTGG--IFEVCWNAAGDKVGASASDGSV 507

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation.

Homo sapiens (taxid: 9606)

>sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 136/336 (40%), Gaps = 32/336 (9%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFN 203
           CA+N    LLA G  D    +W+       G  +++  H   E    +       +  +N
Sbjct: 238 CAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWN 297

Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
             GTLLA G  DG   +W      +A  +  H  P+ ++ W+R G  I+SA  D    IW
Sbjct: 298 TNGTLLATGSYDGFARIWT-EDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIW 356

Query: 264 DVLTGECEQKYRFPS-PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
           D  TGE +Q++ F S P L V +  +N+  F  C       +     D  +      ++ 
Sbjct: 357 DAHTGEAKQQFPFHSAPALDVDW--QNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNE 414

Query: 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-------- 374
                +D  G  + + +    + + S          +A    I +I+++  G        
Sbjct: 415 VNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNS 474

Query: 375 NCLLVNTG-DRLIRVYN-HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 432
           N +L +   D  +R+++  + V         EP+  +             FS DG+Y+ +
Sbjct: 475 NIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSV------------AFSPDGKYLAS 522

Query: 433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH 468
           GS  +  ++IW    GNLV    GT G  + +V W+
Sbjct: 523 GSFDK-CVHIWNTQSGNLVHSYRGTGG--IFEVCWN 555

F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
242008146	488	restnoblastoma-binding protein, putative	0.691	0.881	0.742	0.0
66504538	465	PREDICTED: retinoblastoma-binding protei	0.684	0.916	0.755	0.0
332018812	465	Retinoblastoma-binding protein 5 [Acromy	0.684	0.916	0.757	0.0
380026188	465	PREDICTED: retinoblastoma-binding protei	0.684	0.916	0.753	0.0
383853674	465	PREDICTED: retinoblastoma-binding protei	0.684	0.916	0.755	0.0
340710539	465	PREDICTED: retinoblastoma-binding protei	0.684	0.916	0.753	0.0
307209867	465	Retinoblastoma-binding protein 5 [Harpeg	0.684	0.916	0.755	0.0
156537972	465	PREDICTED: retinoblastoma-binding protei	0.662	0.886	0.761	0.0
118785318	490	AGAP010575-PA [Anopheles gambiae str. PE	0.699	0.887	0.703	0.0
170049502	494	retinoblastoma-binding protein 5 [Culex	0.699	0.880	0.705	0.0

>gi|242008146|ref|XP_002424873.1| restnoblastoma-binding protein, putative [Pediculus humanus corporis] gi|212508431|gb|EEB12135.1| restnoblastoma-binding protein, putative [Pediculus humanus corporis]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/446 (74%), Positives = 381/446 (85%), Gaps = 16/446 (3%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDGALDCISLAVTC+FNKRGTLLAVGCNDGRIV+WDFLTRGIAKIIS+H+HPVCS+SWS
Sbjct: 17  EFDGALDCISLAVTCSFNKRGTLLAVGCNDGRIVIWDFLTRGIAKIISSHVHPVCSLSWS 76

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           R+GYK++SASTDNNVCIW++L+GEC QKYRFPSPILKVQFHPRND MFLVCPMRHAAVLV
Sbjct: 77  RDGYKLLSASTDNNVCIWEILSGECTQKYRFPSPILKVQFHPRNDKMFLVCPMRHAAVLV 136

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D DG+HQIVP+DED+DL+IVASFDRRG+++ TGNSKGKV +     L LK+SFK     A
Sbjct: 137 DVDGEHQIVPLDEDNDLNIVASFDRRGEYIYTGNSKGKVCIYQTTDLTLKSSFKVMLGTA 196

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           STT+IKSIEFARRG C LVNT DR+IRVYN  EV+ +G+DG+PEP+QKLQDLVNKT WKK
Sbjct: 197 STTSIKSIEFARRGECFLVNTADRVIRVYNGSEVIGSGRDGEPEPVQKLQDLVNKTTWKK 256

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEY+CAGSARQHALYIWEK+ G L+KILHGTKGE+LLDVVWHPVRPII SISSG
Sbjct: 257 CCFSGDGEYICAGSARQHALYIWEKATGVLMKILHGTKGEVLLDVVWHPVRPIITSISSG 316

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+E+ESEFDI DEDKS+  G   +DE+LE+DV
Sbjct: 317 VVSVWAQNQVENWSAFAPDFKELDENVEYEEKESEFDIDDEDKSIEAGPQHEDEDLEVDV 376

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAP-----------VTSSP 589
            + E VAAFCSSDE+ +D   L+FLPIAP+VEDPEDG  +T  P             +SP
Sbjct: 377 CTREKVAAFCSSDEDEEDLSSLQFLPIAPEVEDPEDGWQATGVPDHTIEKEKESKENTSP 436

Query: 590 PSKTTKYKSFDIQLEGAACQGIGIIL 615
           P K  KYKS+D++LEG  C+    +L
Sbjct: 437 PVKKKKYKSYDVKLEGPPCEETHPLL 462

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66504538|ref|XP_394331.2| PREDICTED: retinoblastoma-binding protein 5-like isoform 1 [Apis mellifera]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/438 (75%), Positives = 381/438 (86%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRG+AKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGVAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNLNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+D+DSDL+IVASFDRRG +V TGN++G++LVL   +L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDDDSDLNIVASFDRRGDYVYTGNARGRILVLDAESLTVKASYKISQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  EVL  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTSDRVIRVYDSTEVLACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE++D   L+FLPI+PDVED ED     +   T  PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEEMEDIGSLQFLPISPDVEDSED-----NQTTTHEPPMK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 IHLQGAPVDETHPLLNKG 446

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018812|gb|EGI59371.1| Retinoblastoma-binding protein 5 [Acromyrmex echinatior]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/438 (75%), Positives = 379/438 (86%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGIAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNFNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+DEDSDL+IVASFDRRG +V TGN++G+VLVL    L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDEDSDLNIVASFDRRGDYVYTGNARGRVLVLDAETLNVKASYKITQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  E+L  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTADRVIRVYDSTEILACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE +D   L+FLPI+PDVED ED     +  +   PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEETEDIGSLQFLPISPDVEDSED-----NQVMPHEPPMK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 IDLQGAPTDETHPLLNKG 446

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026188|ref|XP_003696838.1| PREDICTED: retinoblastoma-binding protein 5 [Apis florea]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/438 (75%), Positives = 380/438 (86%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRG+AKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGVAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNLNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+D+DSDL+IVASFDRRG +V TGN++G++LVL   +L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDDDSDLNIVASFDRRGDYVYTGNARGRILVLDAESLTVKASYKISQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  EVL  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTSDRVIRVYDSTEVLACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE++D   L+FLPI+PDVED ED     +      PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEEMEDIGSLQFLPISPDVEDSED-----NQTTMHEPPMK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 IHLQGAPVDETHPLLNKG 446

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853674|ref|XP_003702347.1| PREDICTED: retinoblastoma-binding protein 5 [Megachile rotundata]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/438 (75%), Positives = 382/438 (87%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRG+AKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGVAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNLNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+D+DSDL+IVASFDRRG +V TGN++G++LVL   +L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDDDSDLNIVASFDRRGDYVYTGNARGRILVLDAESLTVKASYKISQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  EVL  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTSDRVIRVYDSTEVLACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE++D   L+FLPI+PDVED ED   + + P    PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEEMEDIGSLQFLPISPDVEDSED---NQTTP--HEPPMK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 IHLQGAPVDETHPLLNKG 446

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710539|ref|XP_003393845.1| PREDICTED: retinoblastoma-binding protein 5-like [Bombus terrestris] gi|350427374|ref|XP_003494736.1| PREDICTED: retinoblastoma-binding protein 5-like [Bombus impatiens]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/438 (75%), Positives = 380/438 (86%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRG+AKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGVAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNLNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+D+DSDL+IVASFDRRG +V TGN++G++LVL   +L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDDDSDLNIVASFDRRGDYVYTGNARGRILVLDVESLTVKASYKISQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  EVL  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTSDRVIRVYDSTEVLACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE++D   L+FLPI+PDVED ED     +      PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEEMEDIGSLQFLPISPDVEDSED-----TQTTLHEPPMK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 IHLQGAPVDETHPLLNKG 446

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209867|gb|EFN86646.1| Retinoblastoma-binding protein 5 [Harpegnathos saltator]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/438 (75%), Positives = 378/438 (86%), Gaps = 12/438 (2%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG LDCISLAVTC FNKRGTLLAVGCNDGR+V+WDFLTRGIAKIISAH+HPVCS+SWS
Sbjct: 16  EFDGTLDCISLAVTCTFNKRGTLLAVGCNDGRLVIWDFLTRGIAKIISAHVHPVCSLSWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+GEC+QKYRFPSPILKVQFHPRN + FLVCPMRHAAV+V
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGECDQKYRFPSPILKVQFHPRNLNKFLVCPMRHAAVMV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D +G H+++P+DEDSDL+IVASFDRRG +V TGN++G+VLVL    L +KAS+K     A
Sbjct: 136 DVEGTHRVIPLDEDSDLNIVASFDRRGDYVYTGNARGRVLVLDAETLTVKASYKISQGTA 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG+C LVNT DR+IRVY+  E+L  GKDG+PEPIQKLQDLVNKTMWKK
Sbjct: 196 SNTAVKSIEFARRGSCFLVNTSDRVIRVYDSTEILACGKDGEPEPIQKLQDLVNKTMWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEYVCAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYVCAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDV 540
           VVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFD+SDEDKSV QG + QDEE+E+DV
Sbjct: 316 VVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDLSDEDKSVVQGEEAQDEEIEVDV 375

Query: 541 TSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFD 600
            S++ VAAFCSSDEE +D   L+FLPI+PDVED ED     +      PP K  K++S D
Sbjct: 376 ASIDRVAAFCSSDEETEDIGSLQFLPISPDVEDSED-----NQVTPHEPPLK--KHRSHD 428

Query: 601 IQLEGAACQGIGIILPTG 618
           I L+GA       +L  G
Sbjct: 429 INLQGAPTDETHPLLNKG 446

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537972|ref|XP_001608301.1| PREDICTED: retinoblastoma-binding protein 5-like [Nasonia vitripennis]

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/424 (76%), Positives = 370/424 (87%), Gaps = 12/424 (2%)

Query: 188 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN 247
           DG LDCISLAVTC FNKRGTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+SWSRN
Sbjct: 18  DGTLDCISLAVTCTFNKRGTLLAVGCNDGRIVIWDFLTRGIAKIISAHVHPVCSLSWSRN 77

Query: 248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT 307
           G+K++SASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRN   FLVCPMRHAAV+VD 
Sbjct: 78  GHKLLSASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNWTKFLVCPMRHAAVMVDI 137

Query: 308 DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----AST 362
            G HQ++P+D+DSDL+IVASF+RRG ++ TGN +G++LVL   +  +KASFK     AS 
Sbjct: 138 QGTHQVIPLDQDSDLNIVASFNRRGDYIFTGNGRGRILVLDVESCTVKASFKISQGTASN 197

Query: 363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC 422
           TA+KSIEFARRG+C LVNT DR+IRVY+  EVL  G+DG PEPIQKLQDLVNKT WKKCC
Sbjct: 198 TAVKSIEFARRGSCFLVNTADRVIRVYDSAEVLACGQDGQPEPIQKLQDLVNKTTWKKCC 257

Query: 423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVV 482
           FSGDGEYVCAGSARQHALYIWEKSVGNL KILHGTKGELLLDVVWHPVRPIIASISSGVV
Sbjct: 258 FSGDGEYVCAGSARQHALYIWEKSVGNLQKILHGTKGELLLDVVWHPVRPIIASISSGVV 317

Query: 483 SLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTS 542
           S+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDISDEDKSV QG + QDEE+E+DV +
Sbjct: 318 SIWAQNQVENWSAFAPDFKELDENVEYEERESEFDISDEDKSVVQGEEAQDEEVEVDVAA 377

Query: 543 VEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGSTSAPVTSSPPSKTTKYKSFDIQ 602
           ++ VAAFCSSDEE +D + L+F+PI+P+VED ++     + PV+   P+K  K++  DI 
Sbjct: 378 IDRVAAFCSSDEETEDPESLQFIPISPEVEDDQE-----TQPVSHEIPTK--KHRFHDID 430

Query: 603 LEGA 606
           L+GA
Sbjct: 431 LKGA 434

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785318|ref|XP_314543.3| AGAP010575-PA [Anopheles gambiae str. PEST] gi|116128027|gb|EAA09974.3| AGAP010575-PA [Anopheles gambiae str. PEST]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/458 (70%), Positives = 377/458 (82%), Gaps = 23/458 (5%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG+LDCISLAVTCAFNK GTLLAVGCNDGR+V+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct: 16  EFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRVVIWDFLTRGIAKIISAHVHPVCSLCWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL+G+CEQKYRFPSPILKVQFHPRND+ FLVCPMR+AA+LV
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLSGDCEQKYRFPSPILKVQFHPRNDNKFLVCPMRYAAILV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           D  G H+ +P+D D DL+IVA+FDRRG+H+ TGN+KGK+LVL+   LE+ ASFK     +
Sbjct: 136 DVGGKHECLPLDNDGDLNIVAAFDRRGEHIYTGNAKGKILVLNANTLEIVASFKIVLGSS 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG   LVNT DR+IRVY+ +EV+  GKDG+PEPIQKLQDLVNKT WKK
Sbjct: 196 SVTAVKSIEFARRGEAFLVNTSDRVIRVYDSKEVVTCGKDGEPEPIQKLQDLVNKTTWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEY+CAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYICAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDD-QDEELEID 539
           +VS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI+DEDKSV   ++  QDEE+E+D
Sbjct: 316 LVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDITDEDKSVDLAAESKQDEEVEVD 375

Query: 540 VTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGS-----------------TS 582
           V S EP+AAFCSSDEE +D   L+FLP+AP+VEDPEDG GS                 + 
Sbjct: 376 VVSAEPIAAFCSSDEEYEDEHALQFLPMAPEVEDPEDGWGSQDNDTLGGGGGAAGFGGSD 435

Query: 583 APVTSSPPSKTTKYKSFDIQLEGAACQGIGIILPTGVN 620
           +   + P  K  K   ++I L+ A    +  +L    N
Sbjct: 436 SMKENEPSMKKRKTSQYEIALDNAPIDDVHPLLQNKTN 473

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049502|ref|XP_001856893.1| retinoblastoma-binding protein 5 [Culex quinquefasciatus] gi|167871316|gb|EDS34699.1| retinoblastoma-binding protein 5 [Culex quinquefasciatus]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/462 (70%), Positives = 376/462 (81%), Gaps = 27/462 (5%)

Query: 186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
           EFDG+LDCISLAVTCAFNK GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct: 16  EFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVVWDFLTRGIAKIISAHVHPVCSLCWS 75

Query: 246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
           RNG+K++SASTDNNVCIWDVL G+CE KYRFPSPILKVQFHPRND+ FLVCPMR+AAVLV
Sbjct: 76  RNGHKLLSASTDNNVCIWDVLNGDCEHKYRFPSPILKVQFHPRNDNKFLVCPMRYAAVLV 135

Query: 306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
           +  G HQ +P+D D DL+IVASFDRRG+H+ +GN+KGK+LVL    LE+ ASFK     +
Sbjct: 136 EIGGKHQCLPLDNDGDLNIVASFDRRGEHIYSGNAKGKILVLDSNTLEIVASFKIAVGSS 195

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           S TA+KSIEFARRG   LVNT DR+IRVY+ +EV+  GKDG+PEPIQKLQDLVNKT WKK
Sbjct: 196 SATAVKSIEFARRGEAFLVNTSDRVIRVYDSKEVVTCGKDGEPEPIQKLQDLVNKTTWKK 255

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
           CCFSGDGEY+CAGSARQHALY+WEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct: 256 CCFSGDGEYICAGSARQHALYVWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query: 481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSD-DQDEELEID 539
           +VS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI+DEDKSV   ++  QDEE+E+D
Sbjct: 316 LVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDITDEDKSVDLAAEAKQDEEVEVD 375

Query: 540 VTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDGPGS------------------- 580
           V S EP+AAFCSSDEE +D   L+FLP+AP+VEDPEDG GS                   
Sbjct: 376 VVSAEPIAAFCSSDEEYEDETALQFLPMAPEVEDPEDGWGSQDNADALGSGFNNNSGGGG 435

Query: 581 --TSAPVTSSPPSKTTKYKSFDIQLEGAACQGIGIILPTGVN 620
             +     + P SK  K  S+DI L+ A  + +  +L    N
Sbjct: 436 HDSMGMKENEPGSKKRKTSSYDISLDNAPIEDVHPLLQNKAN 477

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	622
FB|FBgn0036973	489	Rbbp5 [Drosophila melanogaster	0.630	0.801	0.778	4.5e-176
UNIPROTKB|F1S359	546	RBBP5 "Uncharacterized protein	0.644	0.734	0.7	3.5e-162
UNIPROTKB|A4FUE3	538	RBBP5 "RBBP5 protein" [Bos tau	0.627	0.724	0.716	5.7e-162
UNIPROTKB|Q15291	538	RBBP5 "Retinoblastoma-binding	0.627	0.724	0.716	5.7e-162
MGI|MGI:1918367	538	Rbbp5 "retinoblastoma binding	0.627	0.724	0.716	5.7e-162
RGD|1305532	538	Rbbp5 "retinoblastoma binding	0.627	0.724	0.716	5.7e-162
UNIPROTKB|F1NSH5	530	RBBP5 "Uncharacterized protein	0.627	0.735	0.716	7.3e-162
WB|WBGene00017683	454	rbbp-5 [Caenorhabditis elegans	0.633	0.867	0.409	1.4e-80
TAIR|locus:2092930	547	RBL "AT3G21060" [Arabidopsis t	0.263	0.299	0.502	3.3e-72
DICTYBASE|DDB_G0285847	525	rbbE "putative Retinoblastoma	0.347	0.411	0.405	4.5e-67

FB|FBgn0036973 Rbbp5 [Drosophila melanogaster (taxid:7227)]

 Score = 1695 (601.7 bits), Expect = 4.5e-176, Sum P(2) = 4.5e-176
 Identities = 310/398 (77%), Positives = 355/398 (89%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             EFDG+LDCISLAVTCAFNK GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+SW+
Sbjct:    16 EFDGSLDCISLAVTCAFNKYGTLLAVGCNDGRIVIWDFLTRGIAKIISAHVHPVCSLSWT 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             RNG+K++SASTDNNVCIWDVLTGE E KYRFPSP+LKVQF PRND+  LVCPMR+AAVLV
Sbjct:    76 RNGHKLLSASTDNNVCIWDVLTGELEHKYRFPSPVLKVQFDPRNDNRLLVCPMRYAAVLV 135

Query:   306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----A 360
             +  G H+ +P+D D DL+IVASFDRRG+H+ TGN+KGK+LVL     E+ ASF+     +
Sbjct:   136 EVGGTHRCLPLDSDGDLNIVASFDRRGKHIYTGNAKGKILVLDVETFEVVASFRIIVGTS 195

Query:   361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
             S TA+KSIEFARRG+  L+NT DR+IRVY+ +E++  GKDG+PEPIQKLQDLVNKT WKK
Sbjct:   196 SATAVKSIEFARRGDAFLINTSDRVIRVYDSKEIITLGKDGEPEPIQKLQDLVNKTTWKK 255

Query:   421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 480
             CCFSGDGEY+CAGSARQHALYIWEKS+GNLVKILHGTKGELLLDVVWHPVRPIIASISSG
Sbjct:   256 CCFSGDGEYICAGSARQHALYIWEKSIGNLVKILHGTKGELLLDVVWHPVRPIIASISSG 315

Query:   481 VVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSD-DQDEELEID 539
             +VS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI+DEDKSV   +D  QDEE+E+D
Sbjct:   316 LVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIADEDKSVDLNADAQQDEEIEVD 375

Query:   540 VTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPEDG 577
             V  VEPVAAFCSSDEE +D   L+FLP+AP+VEDPEDG
Sbjct:   376 VQKVEPVAAFCSSDEEGEDENALQFLPMAPEVEDPEDG 413

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0044666 "MLL3/4 complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

UNIPROTKB|F1S359 RBBP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 287/410 (70%), Positives = 356/410 (86%)

Query:   175 IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 234
             +A+    +   E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISA
Sbjct:    10 VAESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISA 69

Query:   235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL 294
             H+HPVCS+ WSR+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  L
Sbjct:    70 HIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVL 129

Query:   295 VCPMRHAAVLVD-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE 353
             VCPM+ A V++  +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +
Sbjct:   130 VCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQD 189

Query:   354 LKASFK-----ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408
             L ASF+     ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QK
Sbjct:   190 LVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQK 249

Query:   409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH 468
             LQDLVN+T WKKCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WH
Sbjct:   250 LQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWH 309

Query:   469 PVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ- 527
             PVRPIIASISSGVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  + 
Sbjct:   310 PVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQ 369

Query:   528 -GSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
              G+D  ++E E+DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   370 TGADAAEDE-EVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 418

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|A4FUE3 RBBP5 "RBBP5 protein" [Bos taurus (taxid:9913)]

 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 286/399 (71%), Positives = 352/399 (88%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct:    16 EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct:    76 RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query:   306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
               +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct:   136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query:   360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
             ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct:   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query:   420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
             KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct:   256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query:   480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ--GSDDQDEELE 537
             GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  +  G+D  ++E E
Sbjct:   316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE-E 374

Query:   538 IDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
             +DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   375 VDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q15291 RBBP5 "Retinoblastoma-binding protein 5" [Homo sapiens (taxid:9606)]

 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 286/399 (71%), Positives = 352/399 (88%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct:    16 EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct:    76 RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query:   306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
               +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct:   136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query:   360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
             ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct:   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query:   420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
             KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct:   256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query:   480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ--GSDDQDEELE 537
             GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  +  G+D  ++E E
Sbjct:   316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE-E 374

Query:   538 IDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
             +DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   375 VDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043627 "response to estrogen stimulus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA;IPI

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

MGI|MGI:1918367 Rbbp5 "retinoblastoma binding protein 5" [Mus musculus (taxid:10090)]

 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 286/399 (71%), Positives = 352/399 (88%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct:    16 EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct:    76 RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query:   306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
               +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct:   136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query:   360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
             ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct:   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query:   420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
             KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct:   256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query:   480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ--GSDDQDEELE 537
             GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  +  G+D  ++E E
Sbjct:   316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE-E 374

Query:   538 IDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
             +DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   375 VDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043627 "response to estrogen stimulus" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305532 Rbbp5 "retinoblastoma binding protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
 Identities = 286/399 (71%), Positives = 352/399 (88%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct:    16 EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct:    76 RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVML 135

Query:   306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
               +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL   + +L ASF+     
Sbjct:   136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGT 195

Query:   360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
             ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct:   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query:   420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
             KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct:   256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query:   480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ--GSDDQDEELE 537
             GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  +  G+D  ++E E
Sbjct:   316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE-E 374

Query:   538 IDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
             +DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   375 VDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413

GO:0005634 "nucleus" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA;ISO

GO:0035064 "methylated histone residue binding" evidence=IEA;ISO

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA;ISO

GO:0048188 "Set1C/COMPASS complex" evidence=IEA;ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=IEA;ISO

UNIPROTKB|F1NSH5 RBBP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 286/399 (71%), Positives = 351/399 (87%)

Query:   186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS 245
             E DG LDCIS+A+TC FN+ GTLLAVGCNDGRIV+WDFLTRGIAKIISAH+HPVCS+ WS
Sbjct:    16 EADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWS 75

Query:   246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV 305
             R+G+K++SASTDN V  WDVL+G+C+Q++RFPSPILKVQ+HPR+ +  LVCPM+ A V++
Sbjct:    76 RDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNRVLVCPMKSAPVML 135

Query:   306 D-TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----- 359
               +D  H ++P+D+DSDL++VASFDRRG+++ TGN+KGK+LVL     +L ASF+     
Sbjct:   136 TLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDTQDLVASFRVTTGT 195

Query:   360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK 419
             ++TTAIKSIEFAR+G+C L+NT DR+IRVY+ +E+L  G+DG+PEP+QKLQDLVN+T WK
Sbjct:   196 SNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWK 255

Query:   420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS 479
             KCCFSGDGEY+ AGSARQHALYIWEKS+GNLVKILHGT+GELLLDV WHPVRPIIASISS
Sbjct:   256 KCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISS 315

Query:   480 GVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQ--GSDDQDEELE 537
             GVVS+WAQNQVENWSAFAPDFKELDENVEY+ERESEFDI DEDKS  +  G+D  ++E E
Sbjct:   316 GVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDE-E 374

Query:   538 IDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
             +DVTSV+P+AAFCSSDEE++DSK L +LPIAP+VEDPE+
Sbjct:   375 VDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEE 413

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

WB|WBGene00017683 rbbp-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 169/413 (40%), Positives = 247/413 (59%)

Query:   181 AHMHPEFDGALDCISLAVTCA-FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239
             A    E +  LD  + +  C  FN+ G+++AVGC DGR++++DF+TR IA+  SAH  PV
Sbjct:    11 AQFPEELECHLDLQNASANCCKFNRWGSIVAVGCTDGRVLIYDFMTRNIARTFSAHCLPV 70

Query:   240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR 299
               +SWSR+G K++++S DN++ ++DVL G    + RF S +    FHPRND+  +V  + 
Sbjct:    71 SCLSWSRDGRKLLTSSADNSIAMFDVLAGTLLHRIRFNSMVTFAMFHPRNDNKAIVLQVN 130

Query:   300 HAAVLVDTDGDHQIV-----PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL 354
                 +       Q V     P   D   S V S+DR+G++++ G  KGK+L+ +   L+ 
Sbjct:   131 KQPTVEQFSPRIQTVLANDTPGSSDESASCV-SYDRKGKYIIAGTGKGKLLIYNAETLKC 189

Query:   355 KASFKASTTA-IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV 413
              A  K +T   I+ I    +   ++ NT DR+IR Y  +++L+  +    E   K+ D+V
Sbjct:   190 VAWCKQNTVQQIRQIIVPMKSRFIITNTQDRVIRTYELEDLLHQ-RGQMVEAKYKVLDMV 248

Query:   414 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPI 473
             NK  WK  C   DG YVC  S + H+LYIWE + G+L+KILHG KGE LLDV WHP RPI
Sbjct:   249 NKAAWKNVCTDSDGLYVCGASTKAHSLYIWESNTGSLIKILHGNKGEALLDVQWHPTRPI 308

Query:   474 IASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQD 533
             I SI+ G VS+W Q  VENWSAFAP+F+EL+EN +Y E+E+EFD+ DED      S  QD
Sbjct:   309 ILSIAQGTVSMWTQAHVENWSAFAPEFQELEENEKYIEKENEFDMEDEDADEDMTSKSQD 368

Query:   534 EELEI-DVTSVEPVAAFCSSDEE----VDDSKVLE-----FLPIAPDVEDPED 576
              E +I DV +V P     SSDEE    +  ++ LE     ++P+  D+E+ ++
Sbjct:   369 AEDDIIDVVNVRPEDYLASSDEEDCNIMKPARNLESGPLWYIPVPLDIENADN 421

GO:0040011 "locomotion" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

TAIR|locus:2092930 RBL "AT3G21060" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
 Identities = 87/173 (50%), Positives = 116/173 (67%)

Query:   407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSA--RQHALYIWEKSVGNLVKILHGTKGELLLD 464
             ++ QD V K  WK  CFSGDGE+V  GSA   +H +YIW+++ G+LVKIL G K E L+D
Sbjct:   284 REFQDSVTKMHWKAPCFSGDGEWVVGGSACKGEHKIYIWDRA-GHLVKILEGPK-EALID 341

Query:   465 VVWHPVRPIIASIS-SGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDK 523
             + WHPV PII S+S +G+V +WA++  ENWSAFAPDFKEL+EN EY ERE EFD+  E +
Sbjct:   342 LAWHPVHPIIVSVSLAGLVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETE 401

Query:   524 SVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED 576
              V     ++DEE++ID    +   AF  SD  V++ + L   PI PD  D +D
Sbjct:   402 KVKVLDVNEDEEVDIDTVEKD---AFSDSDMSVEELRYLPAEPI-PDTNDQQD 450

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

DICTYBASE|DDB_G0285847 rbbE "putative Retinoblastoma (Rb) binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 428 (155.7 bits), Expect = 4.5e-67, Sum P(3) = 4.5e-67
 Identities = 94/232 (40%), Positives = 145/232 (62%)

Query:   313 IVPIDEDSDLSIVA---SFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKS 367
             ++P   +S+ + VA   SF+RRG+ +  G+S G + VL   ++ +   FK  +S T +K 
Sbjct:   170 VIPTSVNSNYNGVATFASFNRRGEKIFFGDSCGMISVLDFKSMTIDRQFKVASSNTTVKQ 229

Query:   368 IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG 427
             IEF+R    +LV++ D+++R+ +  E  N  +      +++ QD VN+  WKKCCFS + 
Sbjct:   230 IEFSRNHRFMLVSSSDKVLRLIS-LESTNLYQQ-----MREYQDSVNRMHWKKCCFSSNN 283

Query:   428 EYVCAGSARQ--HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSL 484
             EYV  G   +  H+++IW  S G+LVK L G K E L+DVVWHP+RPII SIS +GV+ +
Sbjct:   284 EYVVGGMNHKSIHSIFIWSVS-GSLVKDLEGPK-EGLVDVVWHPLRPIIVSISFTGVIYV 341

Query:   485 WAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEEL 536
             W     ENWS+FAPDF+EL+EN++Y E E EFD  D D    + +++ +  +
Sbjct:   342 WTAYFEENWSSFAPDFQELEENLDYVEDEDEFDAKDSDNENQEVNNNNNNNI 393

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BX09	RBBP5_MOUSE	No assigned EC number	0.6651	0.6720	0.7769	yes	N/A
Q15291	RBBP5_HUMAN	No assigned EC number	0.7175	0.6318	0.7304	yes	N/A
Q09309	YQS1_CAEEL	No assigned EC number	0.4198	0.6028	0.8259	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	622
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-06

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  102 bits (253), Expect = 6e-23
 Identities = 90/392 (22%), Positives = 155/392 (39%), Gaps = 32/392 (8%)

Query: 146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR 205
           + AF+  G LL  G +DG I LWD             +H      L   S       +  
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS------PDGN 123

Query: 206 GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIW 263
             LLA    DG + LWD  T G + + +  H   V S+++S +G  + S S+ D  + +W
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183

Query: 264 DVLTGECEQKYRFPS-PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
           D+ TG+        + P+  + F P    +           L D      +         
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 323 SIVASFDRRGQHVVTGNSKGKVLVLSCPAL-ELKASFKASTTAIKSIEFARRGNCLLVNT 381
           S+V+SF   G  + +G+S G + +    +   L  +    ++++ S+ F+  G  L   +
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALY 441
            D  +R+++    L  GK      ++  +  V+        FS DG  + +G +    + 
Sbjct: 304 SDGTVRLWD----LETGKLLSSLTLKGHEGPVS-----SLSFSPDGSLLVSGGSDDGTIR 354

Query: 442 IWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLWAQNQVENWSAFAPDF 500
           +W+   G  +K L G     +L V + P   +++S S+ G V LW               
Sbjct: 355 LWDLRTGKPLKTLEG--HSNVLSVSFSPDGRVVSSGSTDGTVRLW----------DLSTG 402

Query: 501 KELDENVEYDERESEFDISDEDKSVAQGSDDQ 532
             L     +  R +  D S + KS+A GS D 
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 52/315 (16%)

Query: 145 VTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN 203
           VTC AF+  G LLA G  DG I +WD  T  + + +  H  P               A +
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-----------VRDVAAS 60

Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW 263
             GT LA G +D  I LWD  T    + ++ H   V S+++S +G  + S+S D  + +W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 264 DVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE---- 318
           DV TG+C    R     +  V F P  D  F+             DG  ++  +      
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP--DGTFVAS--------SSQDGTIKLWDLRTGKCV 170

Query: 319 ------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR 372
                   +++ VA F   G+ +++ +S G + +      +   + +     + S+ F+ 
Sbjct: 171 ATLTGHTGEVNSVA-FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP 229

Query: 373 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ---DLVNKTMWKKCCFSGDGEY 429
            G  L   + D  IRV++ +           E +Q L    + V         +S DG+ 
Sbjct: 230 DGYLLASGSEDGTIRVWDLR---------TGECVQTLSGHTNSVTS-----LAWSPDGKR 275

Query: 430 VCAGSARQHALYIWE 444
           + +GSA    + IW+
Sbjct: 276 LASGSA-DGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 32/203 (15%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             FS DG  + + S R   + +W+   G  +  L G                      V 
Sbjct: 99  VAFSPDGRILSSSS-RDKTIKVWDVETGKCLTTLRGHTD------------------WVN 139

Query: 147 C-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR 205
             AF+  GT +A    DG I LWD  T      ++ H           ++   + AF+  
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH--------TGEVN---SVAFSPD 188

Query: 206 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
           G  L    +DG I LWD  T      +  H + V S+++S +GY + S S D  + +WD+
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Query: 266 LTGECEQKYR-FPSPILKVQFHP 287
            TGEC Q      + +  + + P
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSP 271

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.6 bits (192), Expect = 2e-15
 Identities = 101/474 (21%), Positives = 169/474 (35%), Gaps = 99/474 (20%)

Query: 40  GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG-EYVCA 98
           G  LL  + D  I++++         D   + I+ L+ L + ++ K    S DG   + A
Sbjct: 77  GELLLSGSSDGTIKLWD--------LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128

Query: 99  GSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
            S+    + +W+ S  G L++ L G    +                    AF+  G LLA
Sbjct: 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTS-----------------LAFSPDGKLLA 171

Query: 158 VGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-ND 215
            G + DG I LWD  T      ++ H                + AF+  G LL     +D
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDPVSSLAFSPDGGLLIASGSSD 220

Query: 216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR 275
           G I LWD  T  + +   +        S+S +G  + S S+D  + +WD+ +     +  
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 276 FP--SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ 333
               S +L V F P                               D  L    S D    
Sbjct: 281 SGHSSSVLSVAFSP-------------------------------DGKLLASGSSDGT-- 307

Query: 334 HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQ 392
            V   + +   L+ S        + K     + S+ F+  G+ L+     D  IR+++ +
Sbjct: 308 -VRLWDLETGKLLSSL-------TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Query: 393 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK 452
                        +  +             FS DG  V +GS     + +W+ S G+L++
Sbjct: 360 TGKPLKTLEGHSNVLSVS------------FSPDGRVVSSGST-DGTVRLWDLSTGSLLR 406

Query: 453 ILHGTKGELLLDVVWHPVRPIIASISS-GVVSLWAQNQVENWSAFAPDFKELDE 505
            L G    +   + + P    +AS SS   + LW         +F+PD K L  
Sbjct: 407 NLDGHTSRVTS-LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 51/302 (16%), Positives = 100/302 (33%), Gaps = 60/302 (19%)

Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS-PILKVQFHPR 288
           + +  H   V  +++S +G  + + S D  + +WD+ TGE  +  +  + P+  V     
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA- 61

Query: 289 NDHMFLVCPMRHAAVLVDTDGDHQIVP----------IDEDSDLSIVAS----------- 327
           +              L D +    +            +    D  I++S           
Sbjct: 62  DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Query: 328 ---------------------FDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK 366
                                F   G  V + +  G + +      +  A+    T  + 
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC-FSG 425
           S+ F+  G  LL ++ D  I++++                + L  L           FS 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHENGVNSVAFSP 229

Query: 426 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSL 484
           DG  + +GS     + +W+   G  V+ L G     +  + W P    +AS S+ G + +
Sbjct: 230 DGYLLASGSEDGT-IRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRI 287

Query: 485 WA 486
           W 
Sbjct: 288 WD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 55/254 (21%), Positives = 103/254 (40%), Gaps = 43/254 (16%)

Query: 40  GNCLLVNTGDRLIRVYNHQEVLNAGK--DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC 97
           G+ L   + D  IR+++ +   +  +   G    +                FS DG+ + 
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV------------LSVAFSPDGKLLA 300

Query: 98  AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
           +GS+    + +W+   G L+           L +   +G +  +S      F+  G+LL 
Sbjct: 301 SGSS-DGTVRLWDLETGKLLS---------SLTLKGHEGPVSSLS------FSPDGSLLV 344

Query: 158 VGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 216
            G  +DG I LWD  T    K +  H            S  ++ +F+  G +++ G  DG
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGH------------SNVLSVSFSPDGRVVSSGSTDG 392

Query: 217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF 276
            + LWD  T  + + +  H   V S+ +S +G  + S S+DN + +WD+ T      +  
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Query: 277 PSPILKVQFHPRND 290
              +L  +    + 
Sbjct: 453 DGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 3e-08
 Identities = 66/350 (18%), Positives = 133/350 (38%), Gaps = 39/350 (11%)

Query: 231 IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE-QKYRF--PSPILKVQFHP 287
           ++  H   + SI++S +G  ++S S+D  + +WD+  GE   +       S + K+    
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 288 RNDHMFLVCPMRH---AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-KGK 343
            + +  L+          +   +     I  ++  S+     +F   G+ + +G+S  G 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGD 402
           + +      +  ++    T  + S+ F+  G  L+ +   D  IR+++    L+ GK   
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD----LSTGK--- 232

Query: 403 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE-KSVGNLVKILHGTKGEL 461
                    L   +      FS DG  + A  +    + +W+ +S  +L++ L G     
Sbjct: 233 ----LLRSTLSGHSDSVVSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSS- 286

Query: 462 LLDVVWHPVRPIIASISS-GVVSLW--------------AQNQVENWSAFAPDFKELDEN 506
           +L V + P   ++AS SS G V LW                    +  +F+PD   L   
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 507 VEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEV 556
              D     +D+        +  +     L +  +    V +  S+D  V
Sbjct: 347 GSDDGTIRLWDLR--TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 31/137 (22%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             FS DGE + + S+      +W+ S G  +  L G +  +                  +
Sbjct: 183 VAFSPDGEKLLSSSSDGTI-KLWDLSTGKCLGTLRGHENGV-----------------NS 224

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC-AFNKR 205
            AF+  G LLA G  DG I +WD  T    + +S H +             VT  A++  
Sbjct: 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS------------VTSLAWSPD 272

Query: 206 GTLLAVGCNDGRIVLWD 222
           G  LA G  DG I +WD
Sbjct: 273 GKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
           + +  H  PV S+++S +G  + S S D  V +WD
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD 264
           K +  H  PV S+++S +G  + S S D  + +WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	622
KOG1273|consensus	405		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG0291|consensus	893		100.0
KOG0291|consensus	893		100.0
KOG0318|consensus	603		100.0
KOG0319|consensus	775		100.0
KOG0272|consensus	459		100.0
KOG0272|consensus	459		100.0
KOG0306|consensus	888		100.0
KOG0286|consensus	343		100.0
KOG0306|consensus	888		100.0
KOG0315|consensus	311		100.0
KOG0286|consensus	343		100.0
KOG0273|consensus	524		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0315|consensus	311		100.0
KOG0265|consensus	338		100.0
KOG0296|consensus	399		100.0
KOG1408|consensus	1080		100.0
KOG0276|consensus	794		100.0
KOG1539|consensus	910		100.0
KOG0282|consensus	503		100.0
KOG0263|consensus	707		100.0
KOG0295|consensus	406		100.0
KOG0296|consensus	399		100.0
KOG0293|consensus	519		100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG1539|consensus	910		100.0
KOG0276|consensus	794		100.0
KOG0295|consensus	406		100.0
KOG0284|consensus	464		100.0
KOG0263|consensus	707		100.0
KOG0275|consensus	508		100.0
KOG0285|consensus	460		100.0
KOG0316|consensus	307		100.0
KOG0266|consensus	456		100.0
KOG0265|consensus	338		100.0
KOG0266|consensus	456		100.0
KOG2106|consensus	626		100.0
KOG0292|consensus	1202		100.0
KOG0293|consensus	519		100.0
KOG0282|consensus	503		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645|consensus	312		100.0
KOG0645|consensus	312		100.0
KOG0292|consensus	1202		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0643|consensus	327		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1408|consensus	1080		100.0
KOG0275|consensus	508		100.0
KOG1063|consensus	764		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278|consensus	334		100.0
KOG0316|consensus	307		100.0
KOG0281|consensus	499		100.0
KOG2048|consensus	691		100.0
KOG0283|consensus	712		100.0
KOG1407|consensus	313		100.0
KOG0288|consensus	459		100.0
KOG1446|consensus	311		100.0
KOG1407|consensus	313		100.0
KOG0278|consensus	334		100.0
KOG0281|consensus	499		100.0
KOG0313|consensus	423		100.0
KOG0643|consensus	327		100.0
KOG0772|consensus	641		99.98
KOG0310|consensus	487		99.97
KOG0640|consensus	430		99.97
KOG1063|consensus	764		99.97
KOG0305|consensus	484		99.97
KOG0308|consensus	735		99.97
KOG0283|consensus	712		99.97
KOG2096|consensus	420		99.97
KOG0305|consensus	484		99.97
KOG0310|consensus	487		99.97
KOG0640|consensus	430		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0772|consensus	641		99.97
KOG0313|consensus	423		99.97
KOG0277|consensus	311		99.97
KOG2106|consensus	626		99.97
KOG0973|consensus	942		99.97
KOG0288|consensus	459		99.97
KOG0299|consensus	479		99.97
KOG0289|consensus	506		99.97
KOG2096|consensus	420		99.97
KOG0647|consensus	347		99.97
KOG2048|consensus	691		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0274|consensus	537		99.97
KOG1446|consensus	311		99.97
KOG0277|consensus	311		99.97
KOG0274|consensus	537		99.97
KOG1445|consensus	1012		99.97
KOG0973|consensus	942		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0308|consensus	735		99.96
KOG0641|consensus	350		99.96
KOG0639|consensus	705		99.96
KOG0268|consensus	433		99.96
KOG0294|consensus	362		99.96
KOG0268|consensus	433		99.96
KOG0289|consensus	506		99.96
KOG0299|consensus	479		99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0641|consensus	350		99.96
PTZ00420	568	coronin; Provisional	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG2055|consensus	514		99.95
KOG0647|consensus	347		99.95
KOG0646|consensus	476		99.95
KOG1036|consensus	323		99.95
KOG0294|consensus	362		99.95
KOG1274|consensus	933		99.95
KOG0646|consensus	476		99.95
KOG0300|consensus	481		99.95
KOG0301|consensus	745		99.95
KOG4283|consensus	397		99.94
KOG1036|consensus	323		99.94
KOG2055|consensus	514		99.94
KOG0639|consensus	705		99.94
KOG0300|consensus	481		99.94
KOG0650|consensus	733		99.94
KOG0301|consensus	745		99.94
KOG1274|consensus	933		99.94
KOG1963|consensus	792		99.93
KOG1273|consensus	405		99.93
KOG1332|consensus	299		99.93
KOG0264|consensus	422		99.93
KOG0321|consensus	720		99.93
KOG1963|consensus	792		99.93
KOG4328|consensus	498		99.92
KOG0264|consensus	422		99.92
KOG1445|consensus	1012		99.92
KOG1538|consensus	1081		99.92
KOG4283|consensus	397		99.92
KOG0269|consensus	839		99.92
KOG1332|consensus	299		99.92
KOG2919|consensus	406		99.92
KOG4378|consensus	673		99.91
KOG0650|consensus	733		99.91
KOG2919|consensus	406		99.91
KOG0269|consensus	839		99.91
COG2319	466	FOG: WD40 repeat [General function prediction only	99.91
KOG0267|consensus	825		99.91
KOG4378|consensus	673		99.9
COG2319	466	FOG: WD40 repeat [General function prediction only	99.9
KOG1034|consensus	385		99.9
KOG0270|consensus	463		99.89
KOG0267|consensus	825		99.89
KOG4328|consensus	498		99.89
KOG4497|consensus	447		99.89
KOG1009|consensus	434		99.89
KOG0270|consensus	463		99.89
KOG2445|consensus	361		99.88
KOG2445|consensus	361		99.88
KOG0302|consensus	440		99.88
KOG0307|consensus	1049		99.88
KOG0302|consensus	440		99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1538|consensus	1081		99.87
KOG1009|consensus	434		99.87
KOG1034|consensus	385		99.86
KOG0321|consensus	720		99.86
KOG4497|consensus	447		99.86
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.86
KOG1188|consensus	376		99.85
KOG4227|consensus	609		99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG0307|consensus	1049		99.85
KOG1188|consensus	376		99.85
KOG1334|consensus	559		99.84
KOG0322|consensus	323		99.84
KOG1007|consensus	370		99.83
KOG0649|consensus	325		99.83
KOG2110|consensus	391		99.83
KOG0642|consensus	577		99.81
KOG4227|consensus	609		99.81
KOG1587|consensus	555		99.8
KOG1524|consensus	737		99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG2110|consensus	391		99.8
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.8
KOG0322|consensus	323		99.79
KOG0303|consensus	472		99.79
KOG1310|consensus	758		99.79
KOG0649|consensus	325		99.79
KOG1587|consensus	555		99.79
KOG1517|consensus	1387		99.79
KOG1007|consensus	370		99.79
KOG0644|consensus	1113		99.78
KOG0290|consensus	364		99.77
KOG2139|consensus	445		99.77
KOG1524|consensus	737		99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG0644|consensus	1113		99.77
KOG1517|consensus	1387		99.77
KOG0771|consensus	398		99.76
KOG0290|consensus	364		99.76
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG0303|consensus	472		99.75
KOG0771|consensus	398		99.75
KOG0642|consensus	577		99.75
KOG2315|consensus	566		99.75
KOG2111|consensus	346		99.74
KOG2321|consensus	703		99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.74
KOG2139|consensus	445		99.73
KOG1272|consensus	545		99.73
KOG1272|consensus	545		99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.73
KOG2394|consensus	636		99.73
PRK04922	433	tolB translocation protein TolB; Provisional	99.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG2314|consensus	698		99.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG1523|consensus	361		99.7
KOG1523|consensus	361		99.7
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.7
KOG2314|consensus	698		99.7
KOG1240|consensus	1431		99.69
KOG1334|consensus	559		99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
PRK02889	427	tolB translocation protein TolB; Provisional	99.68
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG2111|consensus	346		99.68
KOG1240|consensus	1431		99.68
KOG2394|consensus	636		99.66
KOG2321|consensus	703		99.66
KOG1409|consensus	404		99.65
KOG2315|consensus	566		99.64
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.64
KOG1310|consensus	758		99.64
KOG0974|consensus	967		99.63
KOG1354|consensus	433		99.63
KOG3881|consensus	412		99.62
KOG3881|consensus	412		99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.62
PRK00178	430	tolB translocation protein TolB; Provisional	99.62
KOG1354|consensus	433		99.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.59
KOG2041|consensus	1189		99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.59
PRK01029	428	tolB translocation protein TolB; Provisional	99.57
KOG1912|consensus	1062		99.57
COG4946	668	Uncharacterized protein related to the periplasmic	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.56
PRK04792	448	tolB translocation protein TolB; Provisional	99.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.54
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.5
KOG2041|consensus	1189		99.47
COG4946	668	Uncharacterized protein related to the periplasmic	99.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.44
KOG0974|consensus	967		99.43
KOG4547|consensus	541		99.42
KOG4547|consensus	541		99.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.4
KOG1409|consensus	404		99.39
KOG1912|consensus	1062		99.38
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
KOG0280|consensus	339		99.35
KOG0280|consensus	339		99.33
KOG1832|consensus	1516		99.31
PRK04043	419	tolB translocation protein TolB; Provisional	99.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.19
KOG1064|consensus	2439		99.18
KOG0309|consensus	1081		99.16
KOG1064|consensus	2439		99.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.12
KOG4190|consensus	1034		99.11
KOG0309|consensus	1081		99.11
KOG4532|consensus	344		99.11
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.09
KOG4532|consensus	344		99.08
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG1832|consensus	1516		99.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.05
PRK02888	635	nitrous-oxide reductase; Validated	99.04
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.04
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.0
KOG4649|consensus	354		99.0
PRK02888	635	nitrous-oxide reductase; Validated	98.98
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.98
KOG4190|consensus	1034		98.97
KOG3914|consensus	390		98.96
KOG0882|consensus	558		98.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.92
KOG4649|consensus	354		98.91
KOG1645|consensus	463		98.88
KOG2695|consensus	425		98.88
KOG3914|consensus	390		98.87
KOG1920|consensus	1265		98.85
KOG3617|consensus	1416		98.84
KOG4714|consensus	319		98.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.77
KOG0882|consensus	558		98.76
KOG1275|consensus	1118		98.74
KOG1920|consensus	1265		98.7
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.69
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.66
KOG3621|consensus	726		98.65
KOG1645|consensus	463		98.63
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.61
KOG4714|consensus	319		98.61
KOG2695|consensus	425		98.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG3617|consensus	1416		98.55
KOG2066|consensus	846		98.55
KOG1897|consensus	1096		98.53
COG3391	381	Uncharacterized conserved protein [Function unknow	98.51
KOG2066|consensus	846		98.5
COG3391	381	Uncharacterized conserved protein [Function unknow	98.48
KOG1275|consensus	1118		98.47
KOG2114|consensus	933		98.46
KOG3621|consensus	726		98.41
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.38
KOG2114|consensus	933		98.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.31
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.24
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.22
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.17
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.12
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.07
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.96
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.95
KOG1008|consensus	783		97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.92
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.89
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.89
PRK13616	591	lipoprotein LpqB; Provisional	97.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.76
KOG1008|consensus	783		97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.72
KOG4640|consensus	665		97.7
PRK13616	591	lipoprotein LpqB; Provisional	97.69
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.68
KOG2444|consensus	238		97.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.6
KOG4499|consensus	310		97.56
KOG4499|consensus	310		97.54
PRK10115	686	protease 2; Provisional	97.42
PHA02713	557	hypothetical protein; Provisional	97.38
KOG2395|consensus	644		97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.31
KOG2395|consensus	644		97.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.29
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.26
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.21
KOG4441|consensus	571		97.18
KOG4441|consensus	571		97.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.13
KOG4640|consensus	665		97.12
PHA02713	557	hypothetical protein; Provisional	97.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.06
PRK10115	686	protease 2; Provisional	97.03
KOG2079|consensus	1206		97.02
KOG2079|consensus	1206		97.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.98
KOG2444|consensus	238		96.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.77
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.7
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.7
KOG1897|consensus	1096		96.61
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.54
PHA03098	534	kelch-like protein; Provisional	96.49
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.42
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.29
PHA03098	534	kelch-like protein; Provisional	96.28
PRK13684	334	Ycf48-like protein; Provisional	96.27
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.25
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.17
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.03
KOG3630|consensus	1405		96.0
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.95
PHA02790	480	Kelch-like protein; Provisional	95.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.91
KOG3630|consensus	1405		95.76
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.62
PHA02790	480	Kelch-like protein; Provisional	95.61
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.42
KOG2247|consensus	615		95.42
COG5167	776	VID27 Protein involved in vacuole import and degra	95.23
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	95.2
COG5276	370	Uncharacterized conserved protein [Function unknow	95.0
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.87
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.77
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.74
COG5167	776	VID27 Protein involved in vacuole import and degra	94.68
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.54
COG5276	370	Uncharacterized conserved protein [Function unknow	94.47
KOG2247|consensus	615		94.39
KOG1916|consensus	1283		94.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.31
PRK13684	334	Ycf48-like protein; Provisional	93.99
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.68
PLN02193	470	nitrile-specifier protein	93.67
KOG3616|consensus	1636		93.44
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.42
KOG1898|consensus	1205		93.14
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.14
KOG2280|consensus	829		93.04
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	92.72
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.71
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.7
PLN02153	341	epithiospecifier protein	92.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.41
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.33
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.15
KOG2280|consensus	829		92.12
COG3292	671	Predicted periplasmic ligand-binding sensor domain	91.96
KOG4460|consensus	741		91.84
KOG1916|consensus	1283		91.69
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.34
KOG4659|consensus	1899		91.1
COG4590	733	ABC-type uncharacterized transport system, permeas	91.09
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.07
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.82
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.79
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.71
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.43
KOG2377|consensus	657		90.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.06
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.92
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.81
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.66
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.35
PLN02153	341	epithiospecifier protein	89.32
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.22
PLN02193	470	nitrile-specifier protein	88.78
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.76
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.76
COG3292	671	Predicted periplasmic ligand-binding sensor domain	88.47
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.35
KOG2377|consensus	657		88.04
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.83
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	87.75
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.54
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.51
KOG1900|consensus	1311		87.44
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.36
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.34
KOG4460|consensus	741		86.89
KOG1900|consensus	1311		86.79
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	86.51
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.4
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	86.4
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.39
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.26
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.46

>KOG1273|consensus

Probab=100.00  E-value=2.3e-56  Score=386.25  Aligned_cols=387  Identities=52%  Similarity=0.898  Sum_probs=346.0

Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC  261 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  261 (622)
                      ..+.....++.+.. ..|+.|++.|.+||+|+.+|.|.|||+.|....+.+.+|..+|++++||+||+.|++++.|..|.
T Consensus        12 ~~PEel~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~   90 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK   90 (405)
T ss_pred             cChHhhceeccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence            33444445555544 78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceEE---EEEeeCCCEEEE
Q psy2110         262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSIV---ASFDRRGQHVVT  337 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~l~~  337 (622)
                      +||+..|.+++.++++++|..+.|+|...+.++++-.+....+.++..+ +.+.........-..   ..|++.|+++++
T Consensus        91 lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   91 LWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             EEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence            9999999999999999999999999999989999888888888888753 333333333222222   358999999999


Q ss_pred             EecCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110         338 GNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT  416 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (622)
                      |+..|.+.+++..+.+++..++... ..|.++.++..|+.|++.+.|+.||.|++......+..+.+.+.++++...+..
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            9999999999999999999998776 889999999999999999999999999999888888888999999999999999


Q ss_pred             eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecCCccccccc
Q psy2110         417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAF  496 (622)
Q Consensus       417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~~~~~~  496 (622)
                      .+.+|+||.+|.|+++++...+.+|||....|.+++.|+|..++...++.|+|-.+.|++...|.+++|...+.++|++|
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~enwsaf  330 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVENWSAF  330 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeecccchhhc
Confidence            99999999999999999988899999999999999999999987799999999999999999999999999999999999


Q ss_pred             CCCCceeccccceecccCCCCCccccccccCCCCCcCccccceeEecCCCccccCCCccccCcCceEEeecCCCCCCCCC
Q psy2110         497 APDFKELDENVEYDERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVAAFCSSDEEVDDSKVLEFLPIAPDVEDPED  576 (622)
Q Consensus       497 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  576 (622)
                      +|+++++.+|.+|+|+|++||+.++++.  ++..+++|+..+|+.+.++...+.++++++.     +|+|+.+..+++++
T Consensus       331 APdFqeleeNieY~EkEdeFDi~DE~~~--e~~~~~aEe~~idv~~v~p~d~~~ss~~e~~-----~~iP~~~~~~~~~~  403 (405)
T KOG1273|consen  331 APDFQELEENIEYEEKEDEFDIEDEDEQ--EQELEQAEEIAIDVVTVEPYDVRGSSDEEER-----FYIPTDLTREIKMQ  403 (405)
T ss_pred             CchHHHHHhhhhhccccccCCccccccc--chhhhhhhhhheeeEeecchhcccCcchhcc-----eecCCCcccccccc
Confidence            9999999999999999999999998877  3447778889999999999998988776643     99999999887765

>KOG0271|consensus

Probab=100.00  E-value=5.6e-53  Score=374.44  Aligned_cols=329  Identities=18%  Similarity=0.341  Sum_probs=297.8

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      .+...+.||.+.|+                 |++|+|+|..|++|+.|.++|+||+.+.....+.++|.           
T Consensus       106 rCssS~~GH~e~Vl-----------------~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~-----------  157 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVL-----------------SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHK-----------  157 (480)
T ss_pred             eeccccCCCCCcEE-----------------EEEecCCCceEEecCCCceEEeeccCCCCcceeecCCc-----------
Confidence            34566788888885                 99999999999999999999999999999999999887           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE-EEeccCCcCeeEEEEcC-----CCCEEEEEeCCCcEEEEECCCC
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISAHMHPVCSISWSR-----NGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                      .+|.|++|+|||+.||+|+.||+|++||..+++++ +.+.+|...|++++|.|     ..++|++++.||.++|||+..+
T Consensus       158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            47999999999999999999999999999998765 78999999999999975     5679999999999999999999


Q ss_pred             cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe-----------eCC----
Q psy2110         269 ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD-----------RRG----  332 (622)
Q Consensus       269 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----  332 (622)
                      +++..+. |..+|+|+.|--+|  ++++++.|++|++|+...+.....+.+|...|..++.+           |.+    
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~  315 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPK  315 (480)
T ss_pred             eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCC
Confidence            9998887 89999999997544  89999999999999999999999999999999888766           223    


Q ss_pred             ---------------------CEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         333 ---------------------QHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       333 ---------------------~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                                           ..+++|+.|+++.+|+.. +.+++..+.+|..-|+.+.||||++++|+++.|..|++|+
T Consensus       316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                 359999999999999975 4458889999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      .+         ..+.+..|++|..  .+..++||.|.++|++++. |.++++|++++.++...|.||.++ |.++.|+||
T Consensus       396 g~---------tGk~lasfRGHv~--~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tkKl~~DLpGh~DE-Vf~vDwspD  462 (480)
T KOG0271|consen  396 GR---------TGKFLASFRGHVA--AVYQVAWSADSRLLVSGSK-DSTLKVWDVRTKKLKQDLPGHADE-VFAVDWSPD  462 (480)
T ss_pred             CC---------Ccchhhhhhhccc--eeEEEEeccCccEEEEcCC-CceEEEEEeeeeeecccCCCCCce-EEEEEecCC
Confidence            98         4566677776654  4577899999999999998 999999999999999999999998 999999999


Q ss_pred             CCEEEEEe-CCcEEEee
Q psy2110         471 RPIIASIS-SGVVSLWA  486 (622)
Q Consensus       471 ~~~l~s~~-dg~v~iw~  486 (622)
                      |..+++++ |..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            99999999 99999996

>KOG0271|consensus

Probab=100.00  E-value=8.4e-52  Score=367.00  Aligned_cols=327  Identities=19%  Similarity=0.324  Sum_probs=288.5

Q ss_pred             hhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          76 QDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        76 ~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      ..+.+| ..+.|++|+|+|+.|++|+.| .++++||+.+..+..+.++|...|+                 |++|+|||+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD-~TvR~WD~~TeTp~~t~KgH~~WVl-----------------cvawsPDgk  170 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGD-TTVRLWDLDTETPLFTCKGHKNWVL-----------------CVAWSPDGK  170 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCC-ceEEeeccCCCCcceeecCCccEEE-----------------EEEECCCcc
Confidence            344455 456799999999999999986 8999999999999999999999995                 999999999


Q ss_pred             EEEEeeCCCcEEEEecCCcccc-cccccccCCCcccccccccceEEEEECC-----CCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIA-KIISAHMHPEFDGALDCISLAVTCAFNK-----RGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      .||+|+.||+|++||..+|+++ ..+.+|..           .|++++|.|     ..++||+++.||.++|||+..+.+
T Consensus       171 ~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----------~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~  239 (480)
T KOG0271|consen  171 KIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----------WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC  239 (480)
T ss_pred             hhhccccCCeEEEecCCCCCcccccccCccc-----------ceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence            9999999999999999988654 55666653           589999976     567999999999999999999999


Q ss_pred             EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEe-----------CCCC------
Q psy2110         229 AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFH-----------PRND------  290 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~-----------~~~~------  290 (622)
                      +..+.+|+.+|+|+.|--+| +|++++.|++|++|+...|.+.+.++ |...|+.++++           |.+.      
T Consensus       240 ~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~s  318 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFS  318 (480)
T ss_pred             EEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChH
Confidence            99999999999999998665 89999999999999999999998888 77888888776           2222      


Q ss_pred             ------------------eEEEEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         291 ------------------HMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       291 ------------------~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                                        ..++++++|.++++|+... .+++..+.+|...|..+.||||++++++++-|..|++|+.++
T Consensus       319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence                              2589999999999999864 568889999999999999999999999999999999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      |+.+.+|++|-..|+.++|+.|.++|++++.|.++++|++++         .+....+.+  +...+.++.|+|||+.++
T Consensus       399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---------kKl~~DLpG--h~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---------KKLKQDLPG--HADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---------eeecccCCC--CCceEEEEEecCCCceee
Confidence            999999999999999999999999999999999999999983         233333333  335667899999999999


Q ss_pred             EeeCCCCeEEEEE
Q psy2110         432 AGSARQHALYIWE  444 (622)
Q Consensus       432 ~~~~~d~~i~iwd  444 (622)
                      +|+. |..+++|.
T Consensus       468 sggk-dkv~~lw~  479 (480)
T KOG0271|consen  468 SGGK-DKVLRLWR  479 (480)
T ss_pred             cCCC-ceEEEeec
Confidence            9998 88999994

>KOG0318|consensus

Probab=100.00  E-value=2.5e-48  Score=358.89  Aligned_cols=431  Identities=18%  Similarity=0.280  Sum_probs=339.0

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee-----------------cccC------------------------
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK-----------------ASRG------------------------   40 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~-----------------~~~~------------------------   40 (622)
                      -.|+...|||.|.|+|+|...|.|||||....+..                 ..++                        
T Consensus        60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S  139 (603)
T KOG0318|consen   60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS  139 (603)
T ss_pred             ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence            36788999999999999999999999998763222                 1122                        


Q ss_pred             ---------------------ceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCCEEEE
Q psy2110          41 ---------------------NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCA   98 (622)
Q Consensus        41 ---------------------~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~   98 (622)
                                           -++++++.|.++.+|.-            .+++....+. |+..+.|+.|||||.++|+
T Consensus       140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG------------PPFKFk~s~r~HskFV~~VRysPDG~~Fat  207 (603)
T KOG0318|consen  140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG------------PPFKFKSSFREHSKFVNCVRYSPDGSRFAT  207 (603)
T ss_pred             cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeC------------CCeeeeecccccccceeeEEECCCCCeEEE
Confidence                                 23455555555555532            2333333333 3445679999999999999


Q ss_pred             ecCCCCeEEEEEcCCCceEEEEe---ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccc
Q psy2110          99 GSARQHALYIWEKSVGNLVKILH---GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  175 (622)
Q Consensus        99 ~~~~~~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~  175 (622)
                      .+.| |.|.+||-.+|+.+..+.   +|.+.|+                 +++|+||++.++|++.|.+++|||+.++++
T Consensus       208 ~gsD-gki~iyDGktge~vg~l~~~~aHkGsIf-----------------alsWsPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  208 AGSD-GKIYIYDGKTGEKVGELEDSDAHKGSIF-----------------ALSWSPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             ecCC-ccEEEEcCCCccEEEEecCCCCccccEE-----------------EEEECCCCceEEEecCCceEEEEEeeccce
Confidence            9986 999999999999999998   8999985                 999999999999999999999999999988


Q ss_pred             ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe
Q psy2110         176 AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS  255 (622)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  255 (622)
                      .+++.....-.        ..-..+.|.  +..|++.+.+|.|.+++......++.+.+|...|+++..++++++|++|+
T Consensus       270 v~t~~~~~~v~--------dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  270 VSTWPMGSTVE--------DQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             EEEeecCCchh--------ceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence            88876554311        123445565  45788999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC----ceeec--------------
Q psy2110         256 TDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD----HQIVP--------------  315 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~--------------  315 (622)
                      .||.|.-|+..++..-+...  |...|.+++.+..+.  +++++.|.++++.++...    .....              
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~  417 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE--LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG  417 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeecCCCc--EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence            99999999999988766643  778899988887554  778888888888876321    10000              


Q ss_pred             -------------ccC--------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--EEEEecCCCCEEEEEEcC
Q psy2110         316 -------------IDE--------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--KASFKASTTAIKSIEFAR  372 (622)
Q Consensus       316 -------------~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~  372 (622)
                                   +..        -.-...+++++|++..+++|+.||.|++|.+....+  ......|.++|+++++||
T Consensus       418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp  497 (603)
T KOG0318|consen  418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP  497 (603)
T ss_pred             CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence                         000        112245789999999999999999999999987653  335668999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC-eeE
Q psy2110         373 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLV  451 (622)
Q Consensus       373 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~-~~~  451 (622)
                      |+.+||++...+.+.+||+...         .. ..-.-..+...+.+++|||+..++|+|+. |..|.||+++.. +.+
T Consensus       498 d~~yla~~Da~rkvv~yd~~s~---------~~-~~~~w~FHtakI~~~aWsP~n~~vATGSl-Dt~Viiysv~kP~~~i  566 (603)
T KOG0318|consen  498 DGAYLAAGDASRKVVLYDVASR---------EV-KTNRWAFHTAKINCVAWSPNNKLVATGSL-DTNVIIYSVKKPAKHI  566 (603)
T ss_pred             CCcEEEEeccCCcEEEEEcccC---------ce-ecceeeeeeeeEEEEEeCCCceEEEeccc-cceEEEEEccChhhhe
Confidence            9999999999999999999841         11 22222335567889999999999999998 889999999763 344


Q ss_pred             EEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         452 KILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       452 ~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      .....|... |+.+.|-.+. .|++++ |..|++|++
T Consensus       567 ~iknAH~~g-Vn~v~wlde~-tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  567 IIKNAHLGG-VNSVAWLDES-TVVSSGQDANIKVWNV  601 (603)
T ss_pred             EeccccccC-ceeEEEecCc-eEEeccCcceeEEecc
Confidence            555567777 9999998665 455555 999999987

>KOG0319|consensus

Probab=100.00  E-value=9.3e-48  Score=369.24  Aligned_cols=445  Identities=15%  Similarity=0.198  Sum_probs=364.2

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------c---ccCceEEeecCCceEEEeechhhhhc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------A---SRGNCLLVNTGDRLIRVYNHQEVLNA   63 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~---~~~~~l~~~~~d~~i~~w~~~~~~~~   63 (622)
                      +..|.-++|+|.|.+||+|+.||.|+|||+....+.              +   .....|+++..|+++++||+....  
T Consensus       105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~--  182 (775)
T KOG0319|consen  105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR--  182 (775)
T ss_pred             CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc--
Confidence            357899999999999999999999999999876433              1   123568999999999999997421  


Q ss_pred             CCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          64 GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                             + .......+.+.+++++|++|+..+++++- |..+.|||+.+.+..+++.-...-                 
T Consensus       183 -------t-cl~~~~~H~S~vtsL~~~~d~~~~ls~~R-Dkvi~vwd~~~~~~l~~lp~ye~~-----------------  236 (775)
T KOG0319|consen  183 -------T-CLHTMILHKSAVTSLAFSEDSLELLSVGR-DKVIIVWDLVQYKKLKTLPLYESL-----------------  236 (775)
T ss_pred             -------h-HHHHHHhhhhheeeeeeccCCceEEEecc-CcEEEEeehhhhhhhheechhhhe-----------------
Confidence                   1 22233345567889999999999999995 489999999777776666543322                 


Q ss_pred             eeEEEEcCC-----CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccc----------------------------
Q psy2110         144 AVTCAFNKR-----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGA----------------------------  190 (622)
Q Consensus       144 v~~~~~s~d-----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----------------------------  190 (622)
                       .++.+-++     +.+++|++.+|.+++||.+++++.........++....                            
T Consensus       237 -E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i  315 (775)
T KOG0319|consen  237 -ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI  315 (775)
T ss_pred             -eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence             25555555     67999999999999999998876655544322211100                            


Q ss_pred             ----cccccceEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy2110         191 ----LDCISLAVTCAF-NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       191 ----~~~~~~v~~~~~-s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~  265 (622)
                          +.....|..++| .|+.++||+++..+.+++|+..+..+. .+.+|...|.++....+|-+|++|+.|+++++|.+
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence                011234555554 567789999999999999998877665 78999999999996677889999999999999988


Q ss_pred             CCCcEE----EEE-eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-----ee----ecccCCCCceEEEEEeeC
Q psy2110         266 LTGECE----QKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-----QI----VPIDEDSDLSIVASFDRR  331 (622)
Q Consensus       266 ~~~~~~----~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~  331 (622)
                      +.+...    ... .|.+.|.+++++..+..+|++++.|.++++|++...+     ..    .....|...|.+++++|+
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence            544332    222 2889999999999999999999999999999997621     11    234568899999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec
Q psy2110         332 GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD  411 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  411 (622)
                      .+++++|+.|.+.+||+++.......+.+|...|.++.|+|..+.++++|.|.+|+||.+.         +..+++++.+
T Consensus       475 dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is---------~fSClkT~eG  545 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS---------TFSCLKTFEG  545 (775)
T ss_pred             CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec---------cceeeeeecC
Confidence            9999999999999999999999999999999999999999999999999999999999999         5677788876


Q ss_pred             cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      |..  .+..+.|-.+|+.|+++++ ||.|++|++++++++.++.+|.+. |..++-+|...++++++ ||.|.+|.-.
T Consensus       546 H~~--aVlra~F~~~~~qliS~~a-dGliKlWnikt~eC~~tlD~H~Dr-vWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  546 HTS--AVLRASFIRNGKQLISAGA-DGLIKLWNIKTNECEMTLDAHNDR-VWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             ccc--eeEeeeeeeCCcEEEeccC-CCcEEEEeccchhhhhhhhhccce-eEEEeecCccceeEecCCCeEEEEeecC
Confidence            654  4577899999999999998 999999999999999999999998 99999999999999999 9999999753

>KOG0291|consensus

Probab=100.00  E-value=6.4e-46  Score=356.97  Aligned_cols=446  Identities=19%  Similarity=0.309  Sum_probs=372.4

Q ss_pred             EEEEccCCcEEEeccCCCeEEEEecccc---cee------------cccCceEEeecCCceEEEeechhhhhcCCCCCCc
Q psy2110           6 VASFDRRGQHVVTGNSKGKVLVLSCPAL---ELK------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE   70 (622)
Q Consensus         6 ~~~fspdg~~latg~~dg~v~vwd~~~~---~~~------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~   70 (622)
                      -+.|++||.-+++- ..+.|.|+|..+.   .+.            +++|.++++....|...+-++..           
T Consensus        19 nl~ft~dG~sviSP-vGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~-----------   86 (893)
T KOG0291|consen   19 NLVFTKDGNSVISP-VGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLS-----------   86 (893)
T ss_pred             cEEECCCCCEEEec-cCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEeccc-----------
Confidence            36899999988874 4578999998763   221            56788888888888877776642           


Q ss_pred             cchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--------ceEEEEeccCcceeEEEEeecCcccccc
Q psy2110          71 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--------NLVKILHGTKGELLLDVVEFDGALDCIS  142 (622)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~  142 (622)
                       ...+..+.-..++-|+.|||||+++|++..  +.+.||.....        ...+++.+|...+               
T Consensus        87 -r~Vlh~f~fk~~v~~i~fSPng~~fav~~g--n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi---------------  148 (893)
T KOG0291|consen   87 -RSVLHRFNFKRGVGAIKFSPNGKFFAVGCG--NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDI---------------  148 (893)
T ss_pred             -ceeeEEEeecCccceEEECCCCcEEEEEec--ceeEEEecCcchhcccCcceEeeeecCCccce---------------
Confidence             223344455667789999999999999984  68999987432        2345677787777               


Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCccc--ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI--AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  220 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  220 (622)
                        +++.|+.|.++|++|+.|-++++|.+...+.  ...+.+|.           ..|.++.|..+...+++.+.||.+.+
T Consensus       149 --~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk-----------d~VvacfF~~~~~~l~tvskdG~l~~  215 (893)
T KOG0291|consen  149 --TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK-----------DYVVACFFGANSLDLYTVSKDGALFV  215 (893)
T ss_pred             --eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC-----------cceEEEEeccCcceEEEEecCceEEE
Confidence              5999999999999999999999999987655  33444444           45889999999999999999999999


Q ss_pred             EEcCC-----------------------Cce-----E------EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         221 WDFLT-----------------------RGI-----A------KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       221 wd~~~-----------------------~~~-----~------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                      |....                       ++.     .      .-+......|++.+|++..+.|++|-..|...+|.+.
T Consensus       216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP  295 (893)
T KOG0291|consen  216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP  295 (893)
T ss_pred             EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence            98751                       111     0      1112233679999999999999999999999999999


Q ss_pred             CCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         267 TGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       267 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      .-.+++.+.. ..+|..+.|+..|+++.+.|+.-|.+.+|+.++..-+...++|...+.+++++|||+++++|+.||.|+
T Consensus       296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK  375 (893)
T KOG0291|consen  296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK  375 (893)
T ss_pred             CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence            9999999984 489999999999999888888889999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC
Q psy2110         346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG  425 (622)
Q Consensus       346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  425 (622)
                      |||..++-|..+|..|...|+.+.|+..|+.+++++-||+|+.||+.         ..+..+++..+ ......+++..|
T Consensus       376 vWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk---------RYrNfRTft~P-~p~QfscvavD~  445 (893)
T KOG0291|consen  376 VWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK---------RYRNFRTFTSP-EPIQFSCVAVDP  445 (893)
T ss_pred             EEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec---------ccceeeeecCC-CceeeeEEEEcC
Confidence            99999999999999999999999999999999999999999999998         33455555443 334557889999


Q ss_pred             CCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCc----c--------c
Q psy2110         426 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV----E--------N  492 (622)
Q Consensus       426 dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~----~--------~  492 (622)
                      .|..+++|+.+.-.|++|++++|+++..+.||.+. |.+++|+|.+..||+++ |.+|++|++-..    +        .
T Consensus       446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP-Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl  524 (893)
T KOG0291|consen  446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP-VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVL  524 (893)
T ss_pred             CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc-ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecccee
Confidence            99999999987778999999999999999999986 99999999999999999 999999998321    1        1


Q ss_pred             ccccCCCCceecc
Q psy2110         493 WSAFAPDFKELDE  505 (622)
Q Consensus       493 ~~~~s~~~~~l~~  505 (622)
                      -.+|+|+|++++-
T Consensus       525 ~vsfrPdG~elaV  537 (893)
T KOG0291|consen  525 AVSFRPDGKELAV  537 (893)
T ss_pred             EEEEcCCCCeEEE
Confidence            1389999998864

>KOG0291|consensus

Probab=100.00  E-value=1.2e-45  Score=355.08  Aligned_cols=459  Identities=16%  Similarity=0.261  Sum_probs=365.6

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee-----------------cccCceEEeecCCceEEEeechhhhhcC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK-----------------ASRGNCLLVNTGDRLIRVYNHQEVLNAG   64 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~-----------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~   64 (622)
                      |.|+++.||.|.++|++|+.|-++|||++...+-.                 ..+...+.+-+.||.+.+|.........
T Consensus       146 ddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~  225 (893)
T KOG0291|consen  146 DDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPEL  225 (893)
T ss_pred             cceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccc
Confidence            67999999999999999999999999998764332                 2345568888999999999876321111


Q ss_pred             CC----------------CCC----cc---chhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe
Q psy2110          65 KD----------------GDP----EP---IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  121 (622)
Q Consensus        65 ~~----------------~~~----~~---~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~  121 (622)
                      ..                ++.    ..   .++.........++|++|++.-..|+++-.. |...+|.+..-.+++.+.
T Consensus       226 ~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss-G~f~LyelP~f~lih~LS  304 (893)
T KOG0291|consen  226 DKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS-GEFGLYELPDFNLIHSLS  304 (893)
T ss_pred             ccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC-CeeEEEecCCceEEEEee
Confidence            11                111    00   0111112233567899999999999999875 899999999999999999


Q ss_pred             ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-CcEEEEecCCcccccccccccCCCcccccccccceEEE
Q psy2110         122 GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC  200 (622)
Q Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  200 (622)
                      -....|                 ..++|+..|.+||.|+.. |.+-||++.+...+...++|..           .+.++
T Consensus       305 is~~~I-----------------~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-----------~i~~l  356 (893)
T KOG0291|consen  305 ISDQKI-----------------LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-----------RITSL  356 (893)
T ss_pred             ccccee-----------------eEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-----------ceeeE
Confidence            888777                 499999999999998764 8999999999888887777764           48999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe
Q psy2110         201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPI  280 (622)
Q Consensus       201 ~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v  280 (622)
                      +++|||+++|+|+.||.|+|||..++-|..++..|+..|+.+.|+..|+.+++++-||+|+.||+...+..+++..+.++
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~  436 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI  436 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999876654


Q ss_pred             --EEEEEeCCCCeEEEEeeCCC-cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-EEE
Q psy2110         281 --LKVQFHPRNDHMFLVCPMRH-AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE-LKA  356 (622)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~  356 (622)
                        .+++..|.|. ++++|+.|. .|++|++++++.+-.+.+|.++|.+++|+|.+..|++++.|.+|++||+-... .+.
T Consensus       437 QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE  515 (893)
T KOG0291|consen  437 QFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE  515 (893)
T ss_pred             eeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee
Confidence              5677777787 455555544 69999999999999999999999999999999999999999999999986543 333


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCC-------Cc--ceeeeccccceeeeeEEEcCCC
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP-------EP--IQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      ++ .+...+..++|+|+|+.|++++-||.|.+||.......+.-...       ..  ...-+.......++++++|+||
T Consensus       516 tl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG  594 (893)
T KOG0291|consen  516 TL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG  594 (893)
T ss_pred             eE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCC
Confidence            34 34577899999999999999999999999999865544211110       01  1111122223567889999999


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEecC--------------------------------------------------
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILHGT--------------------------------------------------  457 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------------------------  457 (622)
                      .+|++|+. .+.|+||++.++-+++.+.-.                                                  
T Consensus       595 ~~IlAgG~-sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdls  673 (893)
T KOG0291|consen  595 KCILAGGE-SNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLS  673 (893)
T ss_pred             CEEEecCC-cccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcc
Confidence            99999997 889999999887665554310                                                  


Q ss_pred             -C----CCceeEEEECCCCCEEEEEeCCcEEEeecCCccc
Q psy2110         458 -K----GELLLDVVWHPVRPIIASISSGVVSLWAQNQVEN  492 (622)
Q Consensus       458 -~----~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~~  492 (622)
                       .    .-.|..+.|+|.|+.+|.++---+.||.++....
T Consensus       674 sRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~  713 (893)
T KOG0291|consen  674 SRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTIL  713 (893)
T ss_pred             ccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceE
Confidence             0    0027889999999999999843478888864433

>KOG0318|consensus

Probab=100.00  E-value=2.4e-43  Score=326.02  Aligned_cols=432  Identities=15%  Similarity=0.233  Sum_probs=337.8

Q ss_pred             EccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCCCCCccch
Q psy2110           9 FDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ   73 (622)
Q Consensus         9 fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~   73 (622)
                      -.|.|+.++-.. ...|.+-++++....               ++.|.++++|...|.||+|+......         +-
T Consensus        26 ~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---------iL   95 (603)
T KOG0318|consen   26 GDPKGDNILYTN-GKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---------IL   95 (603)
T ss_pred             cCCCCCeEEEeC-CCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---------ee
Confidence            345555444322 245666666554222               66799999999999999999753211         11


Q ss_pred             hhhhhccccceeEEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          74 KLQDLVNKTMWKKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      +-....-.+.+..++|++|++.|++.+.. +...+++-+++|..+..+.||...++                 ++.|-|.
T Consensus        96 Knef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~in-----------------s~~~Kps  158 (603)
T KOG0318|consen   96 KNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRIN-----------------SVDFKPS  158 (603)
T ss_pred             eeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEe-----------------eeeccCC
Confidence            11111223455679999999999887642 22333444457888999999999995                 9999987


Q ss_pred             CC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         153 GT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       153 ~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      .. +++||+.|++|.+|+-.-.+....+..|.           ..|.++.|+|||+++++++.||.+.+||-.+++.+..
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-----------kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~  227 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-----------KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE  227 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCeeeeecccccc-----------cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE
Confidence            76 79999999999999876666666666554           3699999999999999999999999999999999999


Q ss_pred             ec---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC----eEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110         232 IS---AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP----ILKVQFHPRNDHMFLVCPMRHAAVL  304 (622)
Q Consensus       232 ~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~i~~  304 (622)
                      +.   +|.+.|.+++|+||++.|++++.|.+++|||+.+.++++++.....    -..+.|..+   .+++-+.+|.+.+
T Consensus       228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd---~lItVSl~G~in~  304 (603)
T KOG0318|consen  228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD---HLITVSLSGTINY  304 (603)
T ss_pred             ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC---eEEEEEcCcEEEE
Confidence            98   8999999999999999999999999999999999999999985544    334556522   5788889999999


Q ss_pred             EEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE-----------EEE---------------
Q psy2110         305 VDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK-----------ASF---------------  358 (622)
Q Consensus       305 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~---------------  358 (622)
                      ++.........+.+|...|+++..++++++|++|+.||.|.-|+..++..-           ..+               
T Consensus       305 ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  305 LNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             ecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence            999988899999999999999999999999999999999999998643210           000               


Q ss_pred             -----------------------------------------------ecC--------CCCEEEEEEcCCCCEEEEEeCC
Q psy2110         359 -----------------------------------------------KAS--------TTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       359 -----------------------------------------------~~~--------~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                                                                     +.+        .-...+++++|+++.+++|+.|
T Consensus       385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D  464 (603)
T KOG0318|consen  385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD  464 (603)
T ss_pred             eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence                                                           000        0123567889999999999999


Q ss_pred             CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-EecCCCCce
Q psy2110         384 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELL  462 (622)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v  462 (622)
                      +.|+||.+..         ...........+...++.++||||+.|||++.. .+.+.+||+.+.+.... +.-|... |
T Consensus       465 gkvhvysl~g---------~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~~s~~~~~~~w~FHtak-I  533 (603)
T KOG0318|consen  465 GKVHVYSLSG---------DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDVASREVKTNRWAFHTAK-I  533 (603)
T ss_pred             ceEEEEEecC---------CcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEcccCceecceeeeeeee-E
Confidence            9999999983         122222233345567789999999999999998 88999999998876433 3447766 9


Q ss_pred             eEEEECCCCCEEEEEe-CCcEEEeecCCccc
Q psy2110         463 LDVVWHPVRPIIASIS-SGVVSLWAQNQVEN  492 (622)
Q Consensus       463 ~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~~  492 (622)
                      ++++|+|+..++|+++ |-+|.||+++.+..
T Consensus       534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             EEEEeCCCceEEEeccccceEEEEEccChhh
Confidence            9999999999999999 99999999976543

>KOG0319|consensus

Probab=100.00  E-value=4e-45  Score=351.18  Aligned_cols=444  Identities=12%  Similarity=0.157  Sum_probs=360.0

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee----------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK----------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~----------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      +.+++++.+||+++|++++..+.+++|+++++++.                .+.+..+++|+.|+.+++||+..      
T Consensus        63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~------  136 (775)
T KOG0319|consen   63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKN------  136 (775)
T ss_pred             hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeC------
Confidence            56899999999999999999999999999887544                34578999999999999999973      


Q ss_pred             CCCCccchhhhhhcccccee-EEEEcCCCCE--EEEecCCCCeEEEEEcCCCc-eEEEEeccCcceeEEEEeecCccccc
Q psy2110          66 DGDPEPIQKLQDLVNKTMWK-KCCFSGDGEY--VCAGSARQHALYIWEKSVGN-LVKILHGTKGELLLDVVEFDGALDCI  141 (622)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~~--l~~~~~~~~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~  141 (622)
                            ......+.++.++. ++.|.|+-.+  |++|. +|+++++||+.+.. ++..+..|...+              
T Consensus       137 ------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~-~D~~v~vwnl~~~~tcl~~~~~H~S~v--------------  195 (775)
T KOG0319|consen  137 ------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA-TDGTVRVWNLNDKRTCLHTMILHKSAV--------------  195 (775)
T ss_pred             ------CEEEEEecCCCceEEEEEeCCccchhheeecC-CCceEEEEEcccCchHHHHHHhhhhhe--------------
Confidence                  33455566665554 7799998654  55555 46999999998554 478888999888              


Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-----CCEEEEEeCCC
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-----GTLLAVGCNDG  216 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg  216 (622)
                         ++++|++|+..+++++.|..|.|||+.+.+....+....            .+-++.+-++     |.++++++.+|
T Consensus       196 ---tsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye------------~~E~vv~l~~~~~~~~~~~~TaG~~g  260 (775)
T KOG0319|consen  196 ---TSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE------------SLESVVRLREELGGKGEYIITAGGSG  260 (775)
T ss_pred             ---eeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh------------heeeEEEechhcCCcceEEEEecCCc
Confidence               699999999999999999999999997766665554432            2455666665     67999999999


Q ss_pred             eEEEEEcCCCceEEEeccC-CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEE
Q psy2110         217 RIVLWDFLTRGIAKIISAH-MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  294 (622)
                      .+++||.+++++....+.. ...+..+...+..+.++....|.++.++|.++.+..+.+- ....|..++|-......++
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la  340 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA  340 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence            9999999998876544432 2336666666656667777789999999999998887776 6788999999877777899


Q ss_pred             EeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc----cEEEEEecCCCCEEEEEE
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELKASFKASTTAIKSIEF  370 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~  370 (622)
                      +++....+++|+..+..+. .+.+|...+.++....+|.+|++|+.|.++++|.++++    -++....+|.+.|.++++
T Consensus       341 VATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  341 VATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             EEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence            9999999999998877666 78899999999997788899999999999999977433    256667799999999999


Q ss_pred             cCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         371 ARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       371 s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                      +..+ .+|+++|.|.++++|++........  ............+...+++++++|+.++||+|+. |.+.+||++..+.
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~~~  496 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQLR  496 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccc--cceehhhHHHHhhcccccceEecCCCceEEeccc-ccceeeecccCce
Confidence            7765 5788999999999999985211111  0111111234455677899999999999999998 8999999999999


Q ss_pred             eEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCccc
Q psy2110         450 LVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQVEN  492 (622)
Q Consensus       450 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~~  492 (622)
                      .+.+|.||... |.+|.|+|..+.+||++ |++|+||.++...-
T Consensus       497 l~~vLsGH~RG-vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC  539 (775)
T KOG0319|consen  497 LLGVLSGHTRG-VWCVSFSKNDQLLATCSGDKTVKIWSISTFSC  539 (775)
T ss_pred             EEEEeeCCccc-eEEEEeccccceeEeccCCceEEEEEecccee
Confidence            99999999987 99999999999999999 99999999985433

>KOG0272|consensus

Probab=100.00  E-value=7.6e-46  Score=333.67  Aligned_cols=281  Identities=21%  Similarity=0.330  Sum_probs=266.4

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC--CCEEE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--GTLLA  157 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~  157 (622)
                      +..++..+.||.|++.|++|+.. |.++||+..+...+..|.||...+                 .++.|+|.  +..||
T Consensus       174 d~rPis~~~fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v-----------------~~~~fhP~~~~~~la  235 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRV-----------------GAAVFHPVDSDLNLA  235 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecC-CceeEeecCCcceeEEEeccccce-----------------eeEEEccCCCcccee
Confidence            44556689999999999999986 999999999999999999999998                 59999997  56899


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      ||+.||++++|++.+...+..+.+|..           .|..++|+|+|++|++++.|.+-++||+.++..+....+|..
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~-----------RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~  304 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLA-----------RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK  304 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchh-----------hheeeeecCCCceeeecccccchhhcccccchhhHhhccccc
Confidence            999999999999999889999998874           489999999999999999999999999999999988999999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .|.+++|.+||..+++|+.|..-+|||+++|+++..+. |..+|.++.|+|+|. .+++|+.|+++++||++....+..+
T Consensus       305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccccceec
Confidence            99999999999999999999999999999999999988 889999999999886 6899999999999999999999999


Q ss_pred             cCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         317 DEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       317 ~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      ..|...|+.+.|+| .|.+|++++.|+++++|..+++.+++++.+|.+.|.++.+++++.++++++.|+++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999998 789999999999999999999999999999999999999999999999999999999995

>KOG0272|consensus

Probab=100.00  E-value=7.4e-45  Score=327.30  Aligned_cols=278  Identities=18%  Similarity=0.299  Sum_probs=258.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      .++..+.|+++++.|++|+.+|.+++|+..+...+.+|.+|...|.++.|+|.  +..|++|+.||++++|++.+..+++
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ  255 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence            46889999999999999999999999999999999999999999999999996  6789999999999999999988888


Q ss_pred             EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         273 KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       273 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .+. |...|..++|+|+|+ ++.+++.|.+-++||++++..+....+|...+.+++|.+||..+++|+.|..-+|||+++
T Consensus       256 ~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt  334 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT  334 (459)
T ss_pred             hhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc
Confidence            887 889999999999998 688999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-CCCeE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYV  430 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l  430 (622)
                      +.++..+.+|...|.+++|+|+|..||+|+.|++++|||++.         ...+..+..|  ..-+..++|+| .|.+|
T Consensus       335 gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~---------r~~ly~ipAH--~nlVS~Vk~~p~~g~fL  403 (459)
T KOG0272|consen  335 GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM---------RSELYTIPAH--SNLVSQVKYSPQEGYFL  403 (459)
T ss_pred             CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc---------cccceecccc--cchhhheEecccCCeEE
Confidence            999999999999999999999999999999999999999993         3344444433  34456789999 78899


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      ++++. |++++||...+..+++.+.||.+. |.++..+|++++|++++ |.++++|.
T Consensus       404 ~Tasy-D~t~kiWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  404 VTASY-DNTVKIWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEccc-CcceeeecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence            99998 999999999999999999999998 99999999999999999 99999996

>KOG0306|consensus

Probab=100.00  E-value=3.2e-42  Score=331.36  Aligned_cols=437  Identities=14%  Similarity=0.192  Sum_probs=351.1

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG   67 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~   67 (622)
                      .|+|++-+||.-+||.|-.||.|+||+..+....               ...|.+|++|+.|+.|.+||+-...      
T Consensus        67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~------  140 (888)
T KOG0306|consen   67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE------  140 (888)
T ss_pred             eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce------
Confidence            5899999999999999999999999999854333               3468999999999999999985311      


Q ss_pred             CCccchhhhhhcc-ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeE
Q psy2110          68 DPEPIQKLQDLVN-KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT  146 (622)
Q Consensus        68 ~~~~~~~~~~~~~-~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  146 (622)
                            .+..+.+ ...++..-|..+.++|++.+.| +.|++||+.+..+..+.-.|.+.+                 ++
T Consensus       141 ------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKD-s~iK~WdL~tqhCf~Thvd~r~Ei-----------------w~  196 (888)
T KOG0306|consen  141 ------GLFRLRGHKDSITQALFLNGDSFLVSVSKD-SMIKFWDLETQHCFETHVDHRGEI-----------------WA  196 (888)
T ss_pred             ------eeEEeecchHHHhHHhccCCCeEEEEeccC-ceEEEEecccceeeeEEecccceE-----------------EE
Confidence                  1222333 3334556677778889998875 999999999999999999999998                 48


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEecCCc------------------------ccccccccc--------------------
Q psy2110         147 CAFNKRGTLLAVGCNDGRIVLWDFLTR------------------------GIAKIISAH--------------------  182 (622)
Q Consensus       147 ~~~s~d~~~l~s~~~dg~i~vw~~~~~------------------------~~~~~~~~~--------------------  182 (622)
                      +++.+  +.+++++.|+.+++|++...                        +.+.....+                    
T Consensus       197 l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  197 LVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             EEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            88876  68888888888999987110                        000000000                    


Q ss_pred             -------------------cC---C-----------------------------------C-----------------c-
Q psy2110         183 -------------------MH---P-----------------------------------E-----------------F-  187 (622)
Q Consensus       183 -------------------~~---~-----------------------------------~-----------------~-  187 (622)
                                         ..   .                                   .                 . 
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s  354 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS  354 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence                               00   0                                   0                 0 


Q ss_pred             c------------cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe
Q psy2110         188 D------------GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS  255 (622)
Q Consensus       188 ~------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  255 (622)
                      .            ....+.+.|.+++++.+...+++|+ .+.+++|+..+.++++++...  .+.+..|.|.++++++|.
T Consensus       355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~  431 (888)
T KOG0306|consen  355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGT  431 (888)
T ss_pred             CCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEec
Confidence            0            0000123567788888877777664 678999999999999999864  889999999999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-----C--ceeecc-----cCCCCc
Q psy2110         256 TDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-----D--HQIVPI-----DEDSDL  322 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----~--~~~~~~-----~~~~~~  322 (622)
                      ..|.+.+||+.+...+.+++ |.+.+.+++.+|++.. +++++.|.++++||..-     +  .....+     ..-...
T Consensus       432 k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd  510 (888)
T KOG0306|consen  432 KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD  510 (888)
T ss_pred             cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence            99999999999998888777 8999999999999985 78999999999999742     1  111111     123567


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      +.++.+||||++++++--|.+++||-+.+.+...++.+|.-+|.||..+||++.+++|+.|..|++|-++         -
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd---------F  581 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD---------F  581 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc---------c
Confidence            8899999999999999999999999999999999999999999999999999999999999999999988         3


Q ss_pred             CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCc
Q psy2110         403 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGV  481 (622)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~  481 (622)
                      ..+-+.+..|  ...+.++.|-|....+.+++. |+.|+-||-..-+.++.+.+|+.+ |++++.+|+|.++++++ |.+
T Consensus       582 GDCHKS~fAH--dDSvm~V~F~P~~~~FFt~gK-D~kvKqWDg~kFe~iq~L~~H~~e-v~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  582 GDCHKSFFAH--DDSVMSVQFLPKTHLFFTCGK-DGKVKQWDGEKFEEIQKLDGHHSE-VWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             chhhhhhhcc--cCceeEEEEcccceeEEEecC-cceEEeechhhhhhheeeccchhe-eeeeEEcCCCCeEEeccCCce
Confidence            3444444333  345678899999888888887 999999999999999999999998 99999999999999999 999


Q ss_pred             EEEeecC
Q psy2110         482 VSLWAQN  488 (622)
Q Consensus       482 v~iw~~~  488 (622)
                      |++|...
T Consensus       658 IRlwE~t  664 (888)
T KOG0306|consen  658 IRLWERT  664 (888)
T ss_pred             eEeeecc
Confidence            9999873

>KOG0286|consensus

Probab=100.00  E-value=2e-42  Score=297.11  Aligned_cols=288  Identities=19%  Similarity=0.386  Sum_probs=255.4

Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL  196 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (622)
                      .++++||.+.|+                 ++.|++|.++|++++.||.+.|||..+......+....           .+
T Consensus        48 rr~LkGH~~Ki~-----------------~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s-----------~W   99 (343)
T KOG0286|consen   48 RRTLKGHLNKIY-----------------AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS-----------SW   99 (343)
T ss_pred             EEEeccccccee-----------------eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc-----------ee
Confidence            378999999995                 99999999999999999999999998876665555443           57


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCC------ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTR------GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      |..++|+|.|+++|+|+-|+...||++.+.      ...+.+.+|.+.+.++.|-+|+ .|++++.|.+..+||+++++.
T Consensus       100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceE
Confidence            999999999999999999999999999865      3557789999999999998755 799999999999999999988


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ++.|. |.+.|.++.++|.                                          +++.+++|+.|+..++||+
T Consensus       179 ~~~f~GH~gDV~slsl~p~------------------------------------------~~ntFvSg~cD~~aklWD~  216 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPS------------------------------------------DGNTFVSGGCDKSAKLWDV  216 (343)
T ss_pred             EEEecCCcccEEEEecCCC------------------------------------------CCCeEEecccccceeeeec
Confidence            88776 5566665555552                                          5667888999999999999


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY  429 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  429 (622)
                      +.+.++++|.+|...|+++.|.|+|.-|++|+.|++.|+||++         ....+..+.......++++++||-.|++
T Consensus       217 R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR---------aD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  217 RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR---------ADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             cCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec---------CCcEEeeeccCcccCCceeEEEcccccE
Confidence            9999999999999999999999999999999999999999999         3455666666666678899999999999


Q ss_pred             EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         430 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      |++|.. |.++.+||.-.++.+..|.||.+. |.++..+|||..+++++ |.+++||.
T Consensus       288 Lfagy~-d~~c~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  288 LFAGYD-DFTCNVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeec-CCceeEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence            999975 999999999999999999999988 99999999999999999 99999994

>KOG0306|consensus

Probab=100.00  E-value=1.9e-41  Score=326.03  Aligned_cols=428  Identities=17%  Similarity=0.239  Sum_probs=341.7

Q ss_pred             EEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeE
Q psy2110           7 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK   86 (622)
Q Consensus         7 ~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (622)
                      +.|-|.+.+.+.|+..+.+..--..     ...|+++++ +.-..|.+||+....         ..+.+........++|
T Consensus         6 lrye~~~~fgviaS~~aN~~~~~~~-----~~~Gr~va~-~a~E~vn~WdlRtge---------~~~~l~~~~~k~evt~   70 (888)
T KOG0306|consen    6 LRYEPAAVFGVIASEVANINFVVKR-----SGKGRAVAV-SALEQVNIWDLRTGE---------IEKKLILLKKKAEVTC   70 (888)
T ss_pred             hcccccceeeeeecCccceeEEEee-----cCCCcEEEE-eccccEeEEeeecch---------hhhhhhhhcccceEEE
Confidence            3566777777777743332221110     122555544 445568899997531         2233333344456778


Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEE
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV  166 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~  166 (622)
                      ++-+|+.-.||+|..| |.|+||+..++...-++.||...|                 +++.|...|..|++||.|+.|.
T Consensus        71 l~~~~d~l~lAVGYaD-GsVqif~~~s~~~~~tfngHK~AV-----------------t~l~fd~~G~rlaSGskDt~II  132 (888)
T KOG0306|consen   71 LRSSDDILLLAVGYAD-GSVQIFSLESEEILITFNGHKAAV-----------------TTLKFDKIGTRLASGSKDTDII  132 (888)
T ss_pred             eeccCCcceEEEEecC-ceEEeeccCCCceeeeecccccce-----------------EEEEEcccCceEeecCCCccEE
Confidence            8888998889999875 999999999999999999999998                 6999999999999999999999


Q ss_pred             EEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110         167 LWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR  246 (622)
Q Consensus       167 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  246 (622)
                      +||+-...-...+.+|..           .|+..-|..+.+++++.+.|+.|++||+++..+..+.-.|.+.++++++.+
T Consensus       133 vwDlV~E~Gl~rL~GHkd-----------~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~  201 (888)
T KOG0306|consen  133 VWDLVGEEGLFRLRGHKD-----------SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE  201 (888)
T ss_pred             EEEeccceeeEEeecchH-----------HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec
Confidence            999988777778888763           467778888888999999999999999999999999999999999999986


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-----------------------------------------------------------
Q psy2110         247 NGYKIISASTDNNVCIWDVLT-----------------------------------------------------------  267 (622)
Q Consensus       247 ~~~~l~s~~~d~~i~iwd~~~-----------------------------------------------------------  267 (622)
                        +.+++++.|+.+++|++..                                                           
T Consensus       202 --~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~  279 (888)
T KOG0306|consen  202 --KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI  279 (888)
T ss_pred             --ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence              7899999999999999811                                                           


Q ss_pred             -----------------------------------------------------CcE------------------------
Q psy2110         268 -----------------------------------------------------GEC------------------------  270 (622)
Q Consensus       268 -----------------------------------------------------~~~------------------------  270 (622)
                                                                           +..                        
T Consensus       280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p  359 (888)
T KOG0306|consen  280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP  359 (888)
T ss_pred             HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence                                                                 000                        


Q ss_pred             -------EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         271 -------EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       271 -------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                             +....|...|.+++++.+.  +++.++..+.+.+|+..+.++++++...  .+.+..|-|.++++++|...|.
T Consensus       360 ~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  360 EADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGE  435 (888)
T ss_pred             cccccceeeeccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCc
Confidence                   0000133456677777654  4666677889999999999999988765  7888999999999999999999


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee---eccccceeeee
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL---QDLVNKTMWKK  420 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  420 (622)
                      +.+||+.+...+.++++|.+.|.+++.+||++.+++++.|.+|++||..-....  .+..+.+..+   ....-...+.+
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~--~gt~~k~lsl~~~rtLel~ddvL~  513 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV--PGTQKKVLSLKHTRTLELEDDVLC  513 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc--CcccceeeeeccceEEeccccEEE
Confidence            999999999999999999999999999999999999999999999998743331  1121111111   11222345678


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +.+||||++||++-- |++++||-+++-+..-.|.||.-. |.++..|||+++++||+ |.+|++|-++
T Consensus       514 v~~Spdgk~LaVsLL-dnTVkVyflDtlKFflsLYGHkLP-V~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  514 VSVSPDGKLLAVSLL-DNTVKVYFLDTLKFFLSLYGHKLP-VLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             EEEcCCCcEEEEEec-cCeEEEEEecceeeeeeecccccc-eeEEeccCCcCeEEeccCCCceEEeccc
Confidence            999999999999998 899999999999999999999975 99999999999999999 9999999886

>KOG0315|consensus

Probab=100.00  E-value=1.2e-40  Score=279.54  Aligned_cols=289  Identities=21%  Similarity=0.308  Sum_probs=250.1

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEE
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKI  231 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~  231 (622)
                      -+|++++.|.+||+|...+|.+..+++...           +.|..+.+.|+++.||+++ ...|++||++++.  ++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d-----------sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPD-----------SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCc-----------cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeE
Confidence            489999999999999999999999887654           4589999999999999887 5689999999765  5789


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      +.+|...|+++.|..+|+++++|+.||+++|||++...+.+.+++.++|+++..+|+.. -++++..+|.|++||+....
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCc
Confidence            99999999999999999999999999999999999999999999999999999999776 47889999999999999874


Q ss_pred             eee-cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc------cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         312 QIV-PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL------ELKASFKASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       312 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      ... .+......+.++...|+|.+++.+...|..++|++.+.      +++.+++.|.+.+....+||++++|++++.|.
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk  237 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK  237 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence            443 34455677899999999999999999999999998654      46778889999999999999999999999999


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD  464 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  464 (622)
                      +++||+.+..        .+....+.+  +..-+-.++||.||+||++++. |+.+++|++..++.++.+.+|... ..+
T Consensus       238 tv~iwn~~~~--------~kle~~l~g--h~rWvWdc~FS~dg~YlvTass-d~~~rlW~~~~~k~v~qy~gh~K~-~vc  305 (311)
T KOG0315|consen  238 TVKIWNTDDF--------FKLELVLTG--HQRWVWDCAFSADGEYLVTASS-DHTARLWDLSAGKEVRQYQGHHKA-AVC  305 (311)
T ss_pred             eEEEEecCCc--------eeeEEEeec--CCceEEeeeeccCccEEEecCC-CCceeecccccCceeeecCCcccc-cEE
Confidence            9999999842        111122222  1234458999999999999998 899999999999999999999876 555


Q ss_pred             EEE
Q psy2110         465 VVW  467 (622)
Q Consensus       465 v~~  467 (622)
                      ++.
T Consensus       306 ~~l  308 (311)
T KOG0315|consen  306 VAL  308 (311)
T ss_pred             EEe
Confidence            554

>KOG0286|consensus

Probab=100.00  E-value=3.4e-40  Score=283.41  Aligned_cols=284  Identities=20%  Similarity=0.343  Sum_probs=256.2

Q ss_pred             hhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          76 QDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        76 ~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      +.+.+| ..+.++.|++|.++|++++.| |.+.|||.-+...++.+.-...+|                 ..++|+|.|+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WV-----------------MtCA~sPSg~  110 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWV-----------------MTCAYSPSGN  110 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeE-----------------EEEEECCCCC
Confidence            344444 457799999999999999986 999999999999999999888888                 5999999999


Q ss_pred             EEEEeeCCCcEEEEecCCc------ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         155 LLAVGCNDGRIVLWDFLTR------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      ++|.|+.|+...||++.+.      ...+.+.+|.           ..+.++.|-+|+ .|++++.|.+..+||+++++.
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----------gylScC~f~dD~-~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----------GYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             eEEecCcCceeEEEecccccccccceeeeeecCcc-----------ceeEEEEEcCCC-ceEecCCCceEEEEEcccceE
Confidence            9999999999999999854      2333445554           468999999865 677999999999999999999


Q ss_pred             EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         229 AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                      +..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.+.|. |.+.|++++|.|+|. -|++|+.|+..++||
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYD  257 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEe
Confidence            999999999999999999 99999999999999999999999999998 889999999999997 589999999999999


Q ss_pred             ecCCceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         307 TDGDHQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       307 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      ++..+.+..+..  ....+++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+|||..+++++.|.
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence            999877766653  346789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEe
Q psy2110         385 LIRVYN  390 (622)
Q Consensus       385 ~i~i~d  390 (622)
                      +++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0273|consensus

Probab=100.00  E-value=2.7e-40  Score=301.90  Aligned_cols=325  Identities=22%  Similarity=0.433  Sum_probs=279.8

Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEecCCc--cc--ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEE
Q psy2110         145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTR--GI--AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV  219 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  219 (622)
                      .+++|+|-.. .+++++.|-+.++|++...  ..  ...++... ............|++++|+.+|..||+|+.+|.++
T Consensus       182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~-~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r  260 (524)
T KOG0273|consen  182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI-REGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR  260 (524)
T ss_pred             EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhh-hhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence            5999999777 8999999999999998751  11  11111111 00011112224689999999999999999999999


Q ss_pred             EEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeC
Q psy2110         220 LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       220 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      +|+. ++..+.++..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+.+ ..+...+.|-.+..  |++++.
T Consensus       261 iw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~t  337 (524)
T KOG0273|consen  261 IWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSST  337 (524)
T ss_pred             EEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCC
Confidence            9995 6778889999999999999999999999999999999999999999999984 45557889987664  899999


Q ss_pred             CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC----
Q psy2110         299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG----  374 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~----  374 (622)
                      ++.++++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||+.........+++|...|..+.|+|.|    
T Consensus       338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999975    


Q ss_pred             -----CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         375 -----NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       375 -----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                           ..+++++.|++|++||+.         .+.++..+..  +..++.+++|||+|+|+|+|+. ||.|.||+.++++
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~---------~gv~i~~f~k--H~~pVysvafS~~g~ylAsGs~-dg~V~iws~~~~~  485 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVE---------SGVPIHTLMK--HQEPVYSVAFSPNGRYLASGSL-DGCVHIWSTKTGK  485 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEcc---------CCceeEeecc--CCCceEEEEecCCCcEEEecCC-CCeeEeccccchh
Confidence                 478999999999999998         4556666643  4567789999999999999998 9999999999999


Q ss_pred             eEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         450 LVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       450 ~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      +++.+.+..+  |..++|+-+|..|..+. |+.+++-++
T Consensus       486 l~~s~~~~~~--Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  486 LVKSYQGTGG--IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eeEeecCCCe--EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            9999988765  99999999999887777 999998876

>KOG0273|consensus

Probab=100.00  E-value=1.4e-39  Score=297.25  Aligned_cols=335  Identities=19%  Similarity=0.300  Sum_probs=281.8

Q ss_pred             CcceEEEEccCCc-EEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110           2 DLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN   80 (622)
Q Consensus         2 ~~V~~~~fspdg~-~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~   80 (622)
                      ..|.+++|+|-.. .||+|+.|-+.++|++..                    ..|........   .++ .....+....
T Consensus       179 ~~V~~~~WnP~~~~llasg~~~s~ari~~l~e--------------------~~~~~~~q~~l---rh~-~~~~~~s~~~  234 (524)
T KOG0273|consen  179 SEVFICAWNPLRDGLLASGSGDSTARIWNLLE--------------------NSNIGSTQLVL---RHC-IREGGKSVPS  234 (524)
T ss_pred             CceEEEecCchhhhhhhccCCccceeeeeehh--------------------hccccchhhhh---hhh-hhhhcccCCc
Confidence            3578888888655 888888888888887521                    01111100000   000 0001122233


Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...+++++|+.+|..||+|+++ |.+++|+.. |.++.++..|.++|+                 ++.|+.+|.+|++++
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~-G~~riw~~~-G~l~~tl~~HkgPI~-----------------slKWnk~G~yilS~~  295 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSED-GEARIWNKD-GNLISTLGQHKGPIF-----------------SLKWNKKGTYILSGG  295 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecC-cEEEEEecC-chhhhhhhccCCceE-----------------EEEEcCCCCEEEecc
Confidence            4567899999999999999986 999999965 888899999999995                 999999999999999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      .|+++.+||..++...+.+..+..+           ...+.|-.+. -+++++.|+.|+++.+....++.++.+|.+.|.
T Consensus       296 vD~ttilwd~~~g~~~q~f~~~s~~-----------~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  296 VDGTTILWDAHTGTVKQQFEFHSAP-----------ALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN  363 (524)
T ss_pred             CCccEEEEeccCceEEEeeeeccCC-----------ccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence            9999999999999888888877643           2456676554 578888999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCC--------CeEEEEeeCCCcEEEEEecCCc
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRN--------DHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--------~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ++.|.|.|.+|++++.|++++||.+....+...+. |...|+.+.|+|.+        ...+++++.|+.+++||...+.
T Consensus       364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv  443 (524)
T KOG0273|consen  364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV  443 (524)
T ss_pred             EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence            99999999999999999999999998888877777 88899999999875        3578899999999999999999


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      ++..+..|..+|++++|+|+|+++++|+.||.|.+|++++++.++.+.+. +.|..++|+.+|.+|..+-.|+.+++.|+
T Consensus       444 ~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  444 PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999999999999999999999999999999999999999998875 56999999999999999999999999988


Q ss_pred             c
Q psy2110         392 Q  392 (622)
Q Consensus       392 ~  392 (622)
                      +
T Consensus       523 r  523 (524)
T KOG0273|consen  523 R  523 (524)
T ss_pred             c
Confidence            6

>KOG0279|consensus

Probab=100.00  E-value=1.2e-38  Score=272.25  Aligned_cols=299  Identities=16%  Similarity=0.261  Sum_probs=247.2

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCC-----cccccccccccCCCcc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLT-----RGIAKIISAHMHPEFD  188 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~  188 (622)
                      ....++++|.+.|                 +.++..+. ...|++++.|.++.+|++..     |..++.+.+|.+    
T Consensus         6 ~l~~tl~gh~d~V-----------------t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH----   64 (315)
T KOG0279|consen    6 VLRGTLEGHTDWV-----------------TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH----   64 (315)
T ss_pred             eeeeeecCCCceE-----------------EEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce----
Confidence            3456789999998                 58888876 45889999999999998754     455677777654    


Q ss_pred             cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                             .|..+..++||++.++++.|+.+++||+.+++..+.|.+|...|.+++|++|.+.|++|+.|++|++|++...
T Consensus        65 -------~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   65 -------FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             -------EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence                   4889999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             cEEEEEeC--CCCeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         269 ECEQKYRF--PSPILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       269 ~~~~~~~~--~~~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      ........  ..-|.++.|+|+. +.+++.++.|+.+++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.
T Consensus       138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~  217 (315)
T KOG0279|consen  138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM  217 (315)
T ss_pred             EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence            44444443  6789999999986 56889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC
Q psy2110         346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG  425 (622)
Q Consensus       346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  425 (622)
                      +||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||+......... .+...-. ..........+++||+
T Consensus       218 LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l-~~d~~g~-s~~~~~~~clslaws~  293 (315)
T KOG0279|consen  218 LWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL-KLDGIGP-SSKAGDPICLSLAWSA  293 (315)
T ss_pred             EEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc-ccccccc-ccccCCcEEEEEEEcC
Confidence            99999999977765 568999999999977666655 456999999843221100 0000000 1111234456889999


Q ss_pred             CCCeEEEeeCCCCeEEEEECC
Q psy2110         426 DGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       426 dg~~l~~~~~~d~~i~iwd~~  446 (622)
                      ||+.|++|-. |+.|++|.+.
T Consensus       294 dG~tLf~g~t-d~~irv~qv~  313 (315)
T KOG0279|consen  294 DGQTLFAGYT-DNVIRVWQVA  313 (315)
T ss_pred             CCcEEEeeec-CCcEEEEEee
Confidence            9999999998 8999999864

>KOG0279|consensus

Probab=100.00  E-value=8.8e-39  Score=273.06  Aligned_cols=286  Identities=15%  Similarity=0.275  Sum_probs=236.2

Q ss_pred             CCcceEEEEccC-CcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           1 SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         1 t~~V~~~~fspd-g~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      +++|++++..+. -..|.++++|.++.+|++...                      |            .......+.+.
T Consensus        15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d----------------------d------------~~~G~~~r~~~   60 (315)
T KOG0279|consen   15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD----------------------D------------IKYGVPVRRLT   60 (315)
T ss_pred             CceEEEEEeecCCCceEEEcccceEEEEEEeccC----------------------c------------cccCceeeeee
Confidence            467888888876 346777788888888875321                      0            11223334445


Q ss_pred             cccc-eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          80 NKTM-WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        80 ~~~~-~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      +|.. +..+..++||++.++++.| +++++||+.+|+..+.|.||...|+                 +++|++|.+.|++
T Consensus        61 GHsH~v~dv~~s~dg~~alS~swD-~~lrlWDl~~g~~t~~f~GH~~dVl-----------------sva~s~dn~qivS  122 (315)
T KOG0279|consen   61 GHSHFVSDVVLSSDGNFALSASWD-GTLRLWDLATGESTRRFVGHTKDVL-----------------SVAFSTDNRQIVS  122 (315)
T ss_pred             ccceEecceEEccCCceEEecccc-ceEEEEEecCCcEEEEEEecCCceE-----------------EEEecCCCceeec
Confidence            5544 4578999999999999986 9999999999999999999999995                 9999999999999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      |+.|++|++|+.... +..++......         ..|.|+.|+|+  ..+|++++.|+++++||+.+.+....+.+|.
T Consensus       123 GSrDkTiklwnt~g~-ck~t~~~~~~~---------~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~  192 (315)
T KOG0279|consen  123 GSRDKTIKLWNTLGV-CKYTIHEDSHR---------EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS  192 (315)
T ss_pred             CCCcceeeeeeeccc-EEEEEecCCCc---------CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc
Confidence            999999999998765 33333333211         57999999998  6799999999999999999999999999999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +.++.+++||||..+++|+.||.+.+||++.++.++.+.+...|.+++|+|+..  .++...+..|++||+.++..+..+
T Consensus       193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnry--wL~~at~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRY--WLCAATATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCce--eEeeccCCceEEEeccchhhhhhc
Confidence            999999999999999999999999999999999999999999999999999764  444455666999999988766554


Q ss_pred             cC---------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         317 DE---------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       317 ~~---------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ..         ......+++|+++|..|++|..|+.|++|.+.
T Consensus       271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            32         23345678999999999999999999999865

>KOG0315|consensus

Probab=100.00  E-value=5.1e-38  Score=263.77  Aligned_cols=267  Identities=14%  Similarity=0.266  Sum_probs=238.2

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR  173 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~  173 (622)
                      -+|+++++| .+|++|...+|.+.++++.....|+                 .+...||++.||+++. ..||+||+.++
T Consensus        11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVN-----------------rLeiTpdk~~LAaa~~-qhvRlyD~~S~   71 (311)
T KOG0315|consen   11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVN-----------------RLEITPDKKDLAAAGN-QHVRLYDLNSN   71 (311)
T ss_pred             eEEEeccCc-ceeeeeehhcCeEEEEEecCcccee-----------------eEEEcCCcchhhhccC-CeeEEEEccCC
Confidence            467888886 9999999999999999998888884                 9999999999999886 68999999987


Q ss_pred             cc--ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEE
Q psy2110         174 GI--AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI  251 (622)
Q Consensus       174 ~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  251 (622)
                      ..  +..+.+|.           ..|.++.|..+|+.+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|
T Consensus        72 np~Pv~t~e~h~-----------kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   72 NPNPVATFEGHT-----------KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTEL  139 (311)
T ss_pred             CCCceeEEeccC-----------CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceE
Confidence            54  55666664           358999999999999999999999999999977766665 67999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC------ceeecccCCCCce
Q psy2110         252 ISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD------HQIVPIDEDSDLS  323 (622)
Q Consensus       252 ~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~  323 (622)
                      +++..+|.|++||+....+...+-  ...++.++...|+|. +++++...|..++|++-+.      .++..+..|...+
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i  218 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI  218 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence            999999999999999887776654  457899999999998 5777888999999998653      4566788899999


Q ss_pred             EEEEEeeCCCEEEEEecCCeEEEEeCCCc-cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         324 IVASFDRRGQHVVTGNSKGKVLVLSCPAL-ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       324 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ..+.+||++++|++++.|.+++||+..+. +....+++|...+...+||.||+||++++.|+.+++|++.
T Consensus       219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            99999999999999999999999999987 6677888999999999999999999999999999999998

>KOG0265|consensus

Probab=100.00  E-value=2e-38  Score=273.59  Aligned_cols=284  Identities=23%  Similarity=0.344  Sum_probs=253.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcC-CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      +.|..+.|+|+|..||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|.+|+.||+++|++.+.
T Consensus        48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk  127 (338)
T KOG0265|consen   48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK  127 (338)
T ss_pred             ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence            468999999999999999999999999964 4455678889999999999999999999999999999999999999999


Q ss_pred             Ee-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         274 YR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       274 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      ++ |..-+.++.-+..|..++.+++.|+++++||++.+..+..+.. ...++++.|..++..+.+|+-|+.|++||++..
T Consensus       128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccC
Confidence            88 6677788887778888999999999999999998887776654 456789999999999999999999999999999


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee--eeEEEcCCCCeE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW--KKCCFSGDGEYV  430 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l  430 (622)
                      .....+.+|...|+.+..+|+|.++++.+.|.++++||++....     ..+.+..++++......  ..++|||+++++
T Consensus       207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~~~i  281 (338)
T KOG0265|consen  207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKI  281 (338)
T ss_pred             cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCCCcc
Confidence            99999999999999999999999999999999999999985322     22346677776665433  478999999999


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      .+|+. |..+++||......+..+.||.+. |++++|+|..++|.+++ |.+|++=.
T Consensus       282 ~ags~-dr~vyvwd~~~r~~lyklpGh~gs-vn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  282 TAGSA-DRFVYVWDTTSRRILYKLPGHYGS-VNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccccc-cceEEEeecccccEEEEcCCccee-EEEeeecCCCcEEEEeccCceeEeec
Confidence            99998 889999999988999999999998 99999999999999999 99998743

>KOG0296|consensus

Probab=100.00  E-value=1e-37  Score=276.37  Aligned_cols=323  Identities=18%  Similarity=0.341  Sum_probs=263.6

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      .|...+.+++.+|+.+++++|+.| ..-++|+..+|.....+.+|...|                 +++.||.||.+|||
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgD-D~AflW~~~~ge~~~eltgHKDSV-----------------t~~~FshdgtlLAT  123 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGD-DLAFLWDISTGEFAGELTGHKDSV-----------------TCCSFSHDGTLLAT  123 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCC-ceEEEEEccCCcceeEecCCCCce-----------------EEEEEccCceEEEe
Confidence            455667899999999999999987 689999999999999999999999                 59999999999999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      |+.+|.|+||+..++.....+....           ..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..+
T Consensus       124 GdmsG~v~v~~~stg~~~~~~~~e~-----------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  124 GDMSGKVLVFKVSTGGEQWKLDQEV-----------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             cCCCccEEEEEcccCceEEEeeccc-----------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence            9999999999999987776665332           34788999999999999999999999999998888999999999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +++=.|.|+|++++++..||+|++||..+++++..+...  ....                                   
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~-----------------------------------  237 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELP-----------------------------------  237 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCC-----------------------------------
Confidence            999999999999999999999999999999887766521  1222                                   


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--------cCCCC---EEEEEEcCCCCEEEEEeCCCc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--------ASTTA---IKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~---i~~~~~s~~~~~l~~~~~d~~  385 (622)
                              ++.++..+..++.|+.++.+++-+..+++.+....        .+...   |.++.|+..-.+.|+|+-||+
T Consensus       238 --------~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~  309 (399)
T KOG0296|consen  238 --------CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT  309 (399)
T ss_pred             --------ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccce
Confidence                    33344445555555555555555555555554444        33333   444455556677889999999


Q ss_pred             EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110         386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV  465 (622)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v  465 (622)
                      |.|||+...         . ++..  ..+...++.+.|-+ ..+|++++. +|.|+.||.++|+++..+.||... |.++
T Consensus       310 i~iyD~a~~---------~-~R~~--c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaRtG~l~~~y~GH~~~-Il~f  374 (399)
T KOG0296|consen  310 IAIYDLAAS---------T-LRHI--CEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDARTGQLKFTYTGHQMG-ILDF  374 (399)
T ss_pred             EEEEecccc---------h-hhee--ccCCCceEEEEEcC-cchheeecc-CceEEeeeccccceEEEEecCchh-eeEE
Confidence            999999831         1 1111  12334578899998 789999998 999999999999999999999987 9999


Q ss_pred             EECCCCCEEEEEe-CCcEEEeecC
Q psy2110         466 VWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       466 ~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +.+|+.+++++++ |++.+|+...
T Consensus       375 ~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  375 ALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999 9999998763

>KOG1408|consensus

Probab=100.00  E-value=3.6e-37  Score=294.69  Aligned_cols=459  Identities=15%  Similarity=0.217  Sum_probs=325.1

Q ss_pred             CcceEEEEccCCcEEEecc--CCCeEEEEecccccee---------------cccCceEEeecC--CceEEEeechhhhh
Q psy2110           2 DLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELK---------------ASRGNCLLVNTG--DRLIRVYNHQEVLN   62 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~--~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~--d~~i~~w~~~~~~~   62 (622)
                      ..++|++||++|+|+|||-  ....++||+++.-.++               .+.++++++.+.  |-.|.+|+......
T Consensus        79 k~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~  158 (1080)
T KOG1408|consen   79 KPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS  158 (1080)
T ss_pred             cceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccc
Confidence            3689999999999999984  7788999999764322               445677775553  45677786542111


Q ss_pred             cCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEE---EeccC---cce----e----
Q psy2110          63 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI---LHGTK---GEL----L----  128 (622)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~---~~~~~---~~v----~----  128 (622)
                                  .....-...+.+++||.||.|+++.+.  ..|++|.++.++....   |.+..   +..    +    
T Consensus       159 ------------~asnkiss~Vsav~fsEdgSYfvT~gn--rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava  224 (1080)
T KOG1408|consen  159 ------------GASNKISSVVSAVAFSEDGSYFVTSGN--RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA  224 (1080)
T ss_pred             ------------ccccccceeEEEEEEccCCceeeeeee--eeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence                        111112334567899999999999985  6899999876652110   00000   000    0    


Q ss_pred             ---------EEEEeecCcc-------------ccc-cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCC
Q psy2110         129 ---------LDVVEFDGAL-------------DCI-SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  185 (622)
Q Consensus       129 ---------~~~~~~~~~~-------------~~~-~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  185 (622)
                               .-.....|++             .|. ....|++.+  .++|+.|+.+|.|++|+..+-....++......
T Consensus       225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~hal  302 (1080)
T KOG1408|consen  225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHAL  302 (1080)
T ss_pred             hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhcccccccccc
Confidence                     0000111111             111 011244444  569999999999999998775554444322111


Q ss_pred             Ccc------------c-ccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce---EEEeccCCcCeeEEEEcCC--
Q psy2110         186 EFD------------G-ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI---AKIISAHMHPVCSISWSRN--  247 (622)
Q Consensus       186 ~~~------------~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~--  247 (622)
                      ...            . .........++.|++....|.+...|..+++||++.-..   ...+--|...|+.+.--|.  
T Consensus       303 g~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv  382 (1080)
T KOG1408|consen  303 GSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNV  382 (1080)
T ss_pred             ccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccc
Confidence            000            0 000011345788999999999999999999999986432   2334457788887766541  


Q ss_pred             ---------CCEEEEEeCCCcEEEEECCCCcEEEE--------------------------------------EeCCCCe
Q psy2110         248 ---------GYKIISASTDNNVCIWDVLTGECEQK--------------------------------------YRFPSPI  280 (622)
Q Consensus       248 ---------~~~l~s~~~d~~i~iwd~~~~~~~~~--------------------------------------~~~~~~v  280 (622)
                               ...|++++.|++|++||+..+..-..                                      +.....+
T Consensus       383 ~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~  462 (1080)
T KOG1408|consen  383 HSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGF  462 (1080)
T ss_pred             cCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccce
Confidence                     13589999999999999875221111                                      0112358


Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC---CCEEEEEecCCeEEEEeCCC-ccEEE
Q psy2110         281 LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR---GQHVVTGNSKGKVLVLSCPA-LELKA  356 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~-~~~~~  356 (622)
                      .+++.+|++++ +++|...|.+++|++........+..|...|.++.|+..   .++|++++.|.-|+|||+.. ..++.
T Consensus       463 R~~~vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q  541 (1080)
T KOG1408|consen  463 RALAVSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ  541 (1080)
T ss_pred             EEEEECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh
Confidence            99999999985 788999999999999999999999999999999999863   57899999999999999853 33444


Q ss_pred             EEecCCCCE-------------------------------------------------EEEEEcCCCCEEEEEeCCCcEE
Q psy2110         357 SFKASTTAI-------------------------------------------------KSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       357 ~~~~~~~~i-------------------------------------------------~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      ++.+|...|                                                 ..++..|..+++++++.|+.|+
T Consensus       542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence            444444444                                                 4455556667788888999999


Q ss_pred             EEecccccccCCCCCCCcceeeeccccc-eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEE
Q psy2110         388 VYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVV  466 (622)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~  466 (622)
                      ||++.         ..+..+.|++...+ .....+...|.|-|||+... |.++.++|..+|+++....||... |+.+.
T Consensus       622 if~i~---------sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sgEcvA~m~GHsE~-VTG~k  690 (1080)
T KOG1408|consen  622 IFDIE---------SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSGECVAQMTGHSEA-VTGVK  690 (1080)
T ss_pred             EEecc---------ccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccchhhhhhcCcchh-eeeee
Confidence            99988         44566667665555 56678899999999999998 899999999999999999999976 99999


Q ss_pred             ECCCCCEEEEEe-CCcEEEeecC
Q psy2110         467 WHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       467 ~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      |.+|.+.|++++ ||.|.||.+.
T Consensus       691 F~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecccchhheeecCCceEEEEECc
Confidence            999999999988 9999999987

>KOG0276|consensus

Probab=100.00  E-value=7.2e-36  Score=281.91  Aligned_cols=416  Identities=17%  Similarity=0.233  Sum_probs=309.9

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      |+.|-|+.|+|...++.++-..|.|.||+.+++.++               ..+.+.+++|+.|..||+|+..+      
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt------   86 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT------   86 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc------
Confidence            689999999999999999999999999999988666               23578999999999999999974      


Q ss_pred             CCCCccchhhhhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-ceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          66 DGDPEPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        66 ~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                            ..++..+..| ..+.|++.+|...++++++. |-+|++||++.+ .+.+++.||..-|                
T Consensus        87 ------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSD-Dm~iKlW~we~~wa~~qtfeGH~HyV----------------  143 (794)
T KOG0276|consen   87 ------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSD-DMTIKLWDWENEWACEQTFEGHEHYV----------------  143 (794)
T ss_pred             ------ceeeEEeeccccceeeeeecCCCCeEEecCC-ccEEEEeeccCceeeeeEEcCcceEE----------------
Confidence                  3444444444 44669999999999999995 599999999755 6788999999988                


Q ss_pred             eeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC--CEEEEEeCCCeEEE
Q psy2110         144 AVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVL  220 (622)
Q Consensus       144 v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~i  220 (622)
                       .+++|+| |.+.+|+++-|++|+||.+.+.....++.+|..           .|.|+.|-+.|  .+|++|+.|..|+|
T Consensus       144 -Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-----------GVN~Vdyy~~gdkpylIsgaDD~tiKv  211 (794)
T KOG0276|consen  144 -MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-----------GVNCVDYYTGGDKPYLISGADDLTIKV  211 (794)
T ss_pred             -EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc-----------CcceEEeccCCCcceEEecCCCceEEE
Confidence             5999999 456999999999999999999988889988874           48999998755  59999999999999


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ||..+..|++++.+|...|..+.|+|.=..|++|+.||+++||+..+-+...++. .-..+.+++-.+.+.. +++|.+.
T Consensus       212 WDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~-i~vG~De  290 (794)
T KOG0276|consen  212 WDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGK-IAVGFDE  290 (794)
T ss_pred             eecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCe-EEEeccC
Confidence            9999999999999999999999999999999999999999999999888877777 4578899988886664 5555555


Q ss_pred             CcEEEEEecCCceeecccCC-----------------------------------------CCceEEEEEeeCCCEEEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDED-----------------------------------------SDLSIVASFDRRGQHVVTG  338 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~l~~~  338 (622)
                      +.+.+ .+....+...+...                                         .-....++.+|+|++++++
T Consensus       291 g~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc  369 (794)
T KOG0276|consen  291 GSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC  369 (794)
T ss_pred             CcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe
Confidence            54432 22111111111000                                         0011235667777776664


Q ss_pred             ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee
Q psy2110         339 NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW  418 (622)
Q Consensus       339 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (622)
                       .||.-.||..-..+     ....+.-..+.|++|.+.+++-.+++.|+++  ++         .+..+.+.....    
T Consensus       370 -gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--kn---------fke~ksi~~~~~----  428 (794)
T KOG0276|consen  370 -GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KN---------FKEHKSIRPDMS----  428 (794)
T ss_pred             -cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ec---------ceeccccccccc----
Confidence             45666666522111     1122444567788887777777777777777  21         111111211111    


Q ss_pred             eeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         419 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                        +.+--.|.+|.+.+  ++.+++||..++++++.+.-.    ...+.|+.+|.+++.++|...++..++
T Consensus       429 --~e~i~gg~Llg~~s--s~~~~fydW~~~~lVrrI~v~----~k~v~w~d~g~lVai~~d~Sfyil~~n  490 (794)
T KOG0276|consen  429 --AEGIFGGPLLGVRS--SDFLCFYDWESGELVRRIEVT----SKHVYWSDNGELVAIAGDDSFYILKFN  490 (794)
T ss_pred             --eeeecCCceEEEEe--CCeEEEEEcccceEEEEEeec----cceeEEecCCCEEEEEecCceeEEEec
Confidence              11112345555555  567999999999999998764    345999999999999997677776665

>KOG1539|consensus

Probab=100.00  E-value=3.2e-36  Score=293.74  Aligned_cols=421  Identities=16%  Similarity=0.244  Sum_probs=339.1

Q ss_pred             cCCcEEEeccCCCeEEEEecccc-ce-------e-------------cccCceEEeecCCceEEEeechhhhhcCCCCCC
Q psy2110          11 RRGQHVVTGNSKGKVLVLSCPAL-EL-------K-------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP   69 (622)
Q Consensus        11 pdg~~latg~~dg~v~vwd~~~~-~~-------~-------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~   69 (622)
                      |=|.+|+++..++.+.||+.... ..       .             ..-=+.++.|+.+|.+++||+...         
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~---------  192 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTG---------  192 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccC---------
Confidence            34778888899999999998773 10       0             011267899999999999999743         


Q ss_pred             ccchhhhhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          70 EPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        70 ~~~~~~~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                         +.+.++.+. ..++++.-+|-=..+|.|..+ |+|.+++++.++.+..|+...+.|                 ++++
T Consensus       193 ---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~-G~ViifNlK~dkil~sFk~d~g~V-----------------tslS  251 (910)
T KOG1539|consen  193 ---KVVYTFQEFFSRITAIEQSPALDVVAIGLEN-GTVIIFNLKFDKILMSFKQDWGRV-----------------TSLS  251 (910)
T ss_pred             ---cEEEEecccccceeEeccCCcceEEEEeccC-ceEEEEEcccCcEEEEEEccccce-----------------eEEE
Confidence               223333222 567889999999999999986 999999999999999999877888                 6999


Q ss_pred             EcCCCC-EEEEeeCCCcEEEEecCCcccccccc-cccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy2110         149 FNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR  226 (622)
Q Consensus       149 ~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~  226 (622)
                      |..||. .+|+|+..|.+.+||++..+.+..+. .|.           +.+....|-|....+++++.|..+++|-.+++
T Consensus       252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~-----------~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY-----------GSVTGATFLPGEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             eccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc-----------CCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence            999998 66777788999999999887766655 332           34677889999999999999999998866643


Q ss_pred             ----ceEEEeccCCcCeeEEEEc-CCCCEEEEEeCCCcEEEEECCC----------------------------------
Q psy2110         227 ----GIAKIISAHMHPVCSISWS-RNGYKIISASTDNNVCIWDVLT----------------------------------  267 (622)
Q Consensus       227 ----~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~iwd~~~----------------------------------  267 (622)
                          +.++.-.+|..+..++.|. .+|..+.+++.|++++.+++..                                  
T Consensus       321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence                3556667899999999997 5788888888888776665421                                  


Q ss_pred             -------------------------------CcE-EEEEeC------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         268 -------------------------------GEC-EQKYRF------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       268 -------------------------------~~~-~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                                                     ... ...+.+      ...+++++.++.|+ +.+.|...|.|-+|++++
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQS  479 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQS  479 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEccc
Confidence                                           111 011111      14577888888887 677888999999999999


Q ss_pred             Cceeecc---cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy2110         310 DHQIVPI---DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI  386 (622)
Q Consensus       310 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  386 (622)
                      +.....+   ..|...++.++.+.-++.+++++.+|.+.+||..+..++..++.. ..+.++..+.....++.+..|-.|
T Consensus       480 Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  480 GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeE
Confidence            9877777   589999999999999999999999999999999998888877754 567888899888899999999999


Q ss_pred             EEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEE
Q psy2110         387 RVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVV  466 (622)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~  466 (622)
                      +++|..         ..+.++.+.++.+  .++.++|||||++|++++. |++|++||+.++.++-.+.-..  +.+++.
T Consensus       559 ~vvD~~---------t~kvvR~f~gh~n--ritd~~FS~DgrWlisasm-D~tIr~wDlpt~~lID~~~vd~--~~~sls  624 (910)
T KOG1539|consen  559 RVVDVV---------TRKVVREFWGHGN--RITDMTFSPDGRWLISASM-DSTIRTWDLPTGTLIDGLLVDS--PCTSLS  624 (910)
T ss_pred             EEEEch---------hhhhhHHhhcccc--ceeeeEeCCCCcEEEEeec-CCcEEEEeccCcceeeeEecCC--cceeeE
Confidence            999988         4456666665544  4588999999999999998 9999999999999998887654  389999


Q ss_pred             ECCCCCEEEEEe-C-CcEEEeecC
Q psy2110         467 WHPVRPIIASIS-S-GVVSLWAQN  488 (622)
Q Consensus       467 ~sp~~~~l~s~~-d-g~v~iw~~~  488 (622)
                      |+|+|.+||++. | .-|++|.-.
T Consensus       625 ~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ECCCCCEEEEEEecCceEEEEEch
Confidence            999999999999 7 679999864

>KOG0282|consensus

Probab=100.00  E-value=1.1e-38  Score=292.62  Aligned_cols=283  Identities=20%  Similarity=0.371  Sum_probs=255.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEEcCC-CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         196 LAVTCAFNK-RGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       196 ~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      .|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+.+|..|++++.|+.|++||+++|+++..
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~  295 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR  295 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence            588999999 899999999999999999986 889999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +.....++++.|+|++.+++++|+.++.|+.||+++++.+..+..|-+.+..+.|-++|+++++.+.|+.++||+.+..-
T Consensus       296 f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  296 FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             EEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         354 LKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       354 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ++.... .+.....++..+|++++++.-+.|+.|.+|.+.....      ...-+.+.++.....-+.|.|||||++|++
T Consensus       376 ~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~feGh~vaGys~~v~fSpDG~~l~S  449 (503)
T KOG0282|consen  376 PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCS  449 (503)
T ss_pred             cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence            655433 3334567899999999999999999999999774222      233455667766677788999999999999


Q ss_pred             eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe-CCcEEEee
Q psy2110         433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS-SGVVSLWA  486 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-dg~v~iw~  486 (622)
                      |++ +|.+++||.++.+++..++.|.+. +..+.|+|..+ .+|+|+ ||.|++|+
T Consensus       450 Gds-dG~v~~wdwkt~kl~~~lkah~~~-ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  450 GDS-DGKVNFWDWKTTKLVSKLKAHDQP-CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecC-CccEEEeechhhhhhhccccCCcc-eEEEEecCCCcceeEecccCceeEecC
Confidence            998 999999999999999999999665 99999999876 788899 99999996

>KOG0263|consensus

Probab=100.00  E-value=1.2e-37  Score=303.19  Aligned_cols=320  Identities=19%  Similarity=0.284  Sum_probs=252.6

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceeccc----CceEEeecCCceEEEeechhhhhcCCCCCCccchhhhh
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASR----GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD   77 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~----~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~   77 (622)
                      ..|+|+.||+|+.+||.|-.|..|++|.+...+++...    -..+=..+.|-.+.+.|...           .......
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~-----------~~~~~~L  447 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS-----------SGTSRTL  447 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC-----------CceeEEe
Confidence            35899999999999999999999999999875544221    12222334444344444431           1111112


Q ss_pred             hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      ..|.++|+.+.|+|+.++|++++.| +++++|.+.+..++..++||..+|                 +.+.|+|.|-++|
T Consensus       448 ~GH~GPVyg~sFsPd~rfLlScSED-~svRLWsl~t~s~~V~y~GH~~PV-----------------wdV~F~P~GyYFa  509 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDRRFLLSCSED-SSVRLWSLDTWSCLVIYKGHLAPV-----------------WDVQFAPRGYYFA  509 (707)
T ss_pred             ecCCCceeeeeecccccceeeccCC-cceeeeecccceeEEEecCCCcce-----------------eeEEecCCceEEE
Confidence            3445667899999999999999986 999999999999999999999999                 6999999999999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      |+|.|++.++|........+.+.+|.           +.|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+|.+
T Consensus       510 tas~D~tArLWs~d~~~PlRifaghl-----------sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~  578 (707)
T KOG0263|consen  510 TASHDQTARLWSTDHNKPLRIFAGHL-----------SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG  578 (707)
T ss_pred             ecCCCceeeeeecccCCchhhhcccc-----------cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence            99999999999999988899888887           4589999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +|.+++|||+|++|++|+.||.|.+||+.+++.+..+. |.+.|.++.|+.+|. ++++++.|..+++||+.........
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~  657 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNL  657 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccc
Confidence            99999999999999999999999999999999887776 889999999999997 7899999999999998753322000


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                       .|        ++         ...+.+.-=+-.+.-++..+.....+|.++.|....-.|++|
T Consensus       658 -~~--------~~---------~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  658 -GH--------IS---------TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             -cc--------cc---------cccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence             00        00         000000000013344566666677789999998776555544

>KOG0295|consensus

Probab=100.00  E-value=3.3e-37  Score=272.88  Aligned_cols=283  Identities=18%  Similarity=0.303  Sum_probs=262.8

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+..+-|.|+-..+++++.+ ++|++||..+|++.+.++||...+.                 .++|+..|++||++
T Consensus       107 ~r~~vt~v~~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~-----------------di~~~a~Gk~l~tc  168 (406)
T KOG0295|consen  107 HRSSVTRVIFHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVF-----------------DISFDASGKYLATC  168 (406)
T ss_pred             cccceeeeeeccCceEEEEecCC-ceEEEEEccchhhhhhhhcccccee-----------------EEEEecCccEEEec
Confidence            55667789999999999988865 9999999999999999999999984                 99999999999999


Q ss_pred             eCCCcEEEEecCC-cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         160 CNDGRIVLWDFLT-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       160 ~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      +.|-.+++||..+ .++++.+.+|..           .|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...
T Consensus       169 SsDl~~~LWd~~~~~~c~ks~~gh~h-----------~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew  237 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTFFRCIKSLIGHEH-----------GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW  237 (406)
T ss_pred             CCccchhheeHHHHHHHHHHhcCccc-----------ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence            9999999999987 456666666653           4899999999999999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCC--------------CCeEEEEeeCCCcEE
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPR--------------NDHMFLVCPMRHAAV  303 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--------------~~~~~~~~~~~~~i~  303 (622)
                      |..++.+.||..+++++.|.+|++|-+.++++...++ |..+|.+++|.|.              +..++.+++.|++|+
T Consensus       238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            9999999999999999999999999999999888887 8889999999763              235888999999999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      +||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||++++++...+..|..-++++.|+.+..++++|+-|
T Consensus       318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd  397 (406)
T KOG0295|consen  318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD  397 (406)
T ss_pred             EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEec
Q psy2110         384 RLIRVYNH  391 (622)
Q Consensus       384 ~~i~i~d~  391 (622)
                      ..+++|..
T Consensus       398 qt~KvwEc  405 (406)
T KOG0295|consen  398 QTVKVWEC  405 (406)
T ss_pred             ceeeeeec
Confidence            99999964

>KOG0296|consensus

Probab=100.00  E-value=9.3e-36  Score=263.91  Aligned_cols=322  Identities=16%  Similarity=0.216  Sum_probs=271.6

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN   80 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~   80 (622)
                      +++|.+++.+|+.+++|||+.|....||++.++...                  ..+                    ..+
T Consensus        64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~------------------~el--------------------tgH  105 (399)
T KOG0296|consen   64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA------------------GEL--------------------TGH  105 (399)
T ss_pred             CCceEEEEeCCCCceEEecCCCceEEEEEccCCcce------------------eEe--------------------cCC
Confidence            578999999999999999999999999996443311                  111                    123


Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...|+|+.||.+|.+||+|.-+ |.|+||...++.....+...-..+                 .-+.|+|.+..|+.|+
T Consensus       106 KDSVt~~~FshdgtlLATGdms-G~v~v~~~stg~~~~~~~~e~~di-----------------eWl~WHp~a~illAG~  167 (399)
T KOG0296|consen  106 KDSVTCCSFSHDGTLLATGDMS-GKVLVFKVSTGGEQWKLDQEVEDI-----------------EWLKWHPRAHILLAGS  167 (399)
T ss_pred             CCceEEEEEccCceEEEecCCC-ccEEEEEcccCceEEEeecccCce-----------------EEEEecccccEEEeec
Confidence            4457899999999999999976 999999999999988887555555                 4899999999999999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-CCcCe
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA-HMHPV  239 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v  239 (622)
                      .||.+.+|.+.++...+.+.+|..           .+++=.|.|+|+.++++..||+|++|+..+++++..+.+ .....
T Consensus       168 ~DGsvWmw~ip~~~~~kv~~Gh~~-----------~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~  236 (399)
T KOG0296|consen  168 TDGSVWMWQIPSQALCKVMSGHNS-----------PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL  236 (399)
T ss_pred             CCCcEEEEECCCcceeeEecCCCC-----------CcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence            999999999999878888888764           477889999999999999999999999999999888763 23567


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEEeC---CCCeEEEEeeCCCcEEEEEe
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---------PSPILKVQFHP---RNDHMFLVCPMRHAAVLVDT  307 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~---~~~~~~~~~~~~~~i~~~d~  307 (622)
                      .++.++..+..++.|+.++.+++-+..+|+.+.....         ...+.++.+.|   .-+ ++++++.||+|.+||+
T Consensus       237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDL  315 (399)
T ss_pred             CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEec
Confidence            8899999999999999999999999999988776652         22334444443   333 7888999999999999


Q ss_pred             cCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110         308 DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      ........ -.|...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.+|...|.+++++|+.+++++++.|++.+
T Consensus       316 a~~~~R~~-c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~  393 (399)
T KOG0296|consen  316 AASTLRHI-CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTAL  393 (399)
T ss_pred             ccchhhee-ccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEE
Confidence            87554433 44666789999988 78999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecc
Q psy2110         388 VYNHQ  392 (622)
Q Consensus       388 i~d~~  392 (622)
                      ||+..
T Consensus       394 VF~v~  398 (399)
T KOG0296|consen  394 VFEVP  398 (399)
T ss_pred             EEecC
Confidence            99864

>KOG0293|consensus

Probab=100.00  E-value=7.4e-37  Score=274.67  Aligned_cols=281  Identities=21%  Similarity=0.390  Sum_probs=245.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      ..|.-+.||++|++||+++.|.+..+|.+....   ..+++.+|..+|..+.||||.++|++++.+..+++||+.+|.+.
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~  304 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR  304 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence            458999999999999999999999999986543   46788899999999999999999999999999999999999999


Q ss_pred             EEEeCC--CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         272 QKYRFP--SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       272 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ..+.+.  ..+.+.+|.||+.. +++|+.|+.+..||+.....-.--......+.+++.++||+++++.+.|..|++|+.
T Consensus       305 ~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~  383 (519)
T KOG0293|consen  305 HLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR  383 (519)
T ss_pred             hhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeech
Confidence            888854  78999999999986 889999999999999875432222223466889999999999999999999999998


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCC-CC
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD-GE  428 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~  428 (622)
                      .+...+..+.. ..+|++++.|.+++++++.-.+..|++||+.         +...++++.++.....+..-||-.- ..
T Consensus       384 e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~---------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  384 EARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLE---------ENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             hhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecc---------hhhHHHHhhcccccceEEEeccCCCCcc
Confidence            87665544443 4789999999999999999999999999998         5677888888888877777788764 47


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe-CCcEEEeecC
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS-SGVVSLWAQN  488 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-dg~v~iw~~~  488 (622)
                      ++++|+. |+.||||+..+|+++..+.||... |++|+|+|..+ ++|+++ ||+|+||.+.
T Consensus       454 fiaSGSE-D~kvyIWhr~sgkll~~LsGHs~~-vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  454 FIASGSE-DSKVYIWHRISGKLLAVLSGHSKT-VNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eEEecCC-CceEEEEEccCCceeEeecCCcce-eeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            8888887 999999999999999999999987 99999999887 788999 9999999875

>KOG0284|consensus

Probab=100.00  E-value=6.3e-38  Score=281.35  Aligned_cols=284  Identities=21%  Similarity=0.337  Sum_probs=252.1

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      .....|..+.|.|+|+.|++|+.. |.+.+|+..+-.....+..|...|                 +++.|++++.++++
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~V-----------------r~m~ws~~g~wmiS  155 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPV-----------------RTMKWSHNGTWMIS  155 (464)
T ss_pred             ccccceeeEEEcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccc-----------------eeEEEccCCCEEEE
Confidence            344567789999999999999975 999999986555555677899888                 69999999999999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      |+.+|.|++|+..-. .++.+..+..          ..|.+++|+|+...+++++.||+|+|||....+..+.+.+|.-.
T Consensus       156 gD~gG~iKyWqpnmn-nVk~~~ahh~----------eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd  224 (464)
T KOG0284|consen  156 GDKGGMIKYWQPNMN-NVKIIQAHHA----------EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD  224 (464)
T ss_pred             cCCCceEEecccchh-hhHHhhHhhh----------hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence            999999999987654 3344444432          25899999999999999999999999999999888999999999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      |.+++|+|....|++++.|+.|++||.++++|+.++. |...|..+.|+|++ .++++++.|..++++|+++.+.+..+.
T Consensus       225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r  303 (464)
T KOG0284|consen  225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYR  303 (464)
T ss_pred             cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhh
Confidence            9999999999999999999999999999999999887 88999999999999 589999999999999999999999999


Q ss_pred             CCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         318 EDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +|...+.++.|+|-. .++.+|+.||.|..|.+...+++..+. +|...|.+++|+|=|..|++|+.|.++++|...
T Consensus       304 ~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  304 GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            999999999999954 677889999999999998656555554 899999999999999999999999999999765

>KOG0285|consensus

Probab=100.00  E-value=5.6e-36  Score=264.24  Aligned_cols=291  Identities=20%  Similarity=0.354  Sum_probs=259.8

Q ss_pred             cchhhhhhcccccee-EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          71 PIQKLQDLVNKTMWK-KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        71 ~~~~~~~~~~~~~~~-~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      +.+..+.+.+|.+|+ |+++.|-.+++++|+.| ++|.|||+.+|++..++.||...+                 +.+++
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~v-----------------r~vav  201 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETV-----------------RGVAV  201 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhhee-----------------eeeee
Confidence            445556677888766 89999999999999986 999999999999999999999988                 69999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA  229 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~  229 (622)
                      |+-..||++++.|+.|+.||++.++.++.+.+|.           +.|.|++.+|.-..|++|+.|.++++||+++...+
T Consensus       202 S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl-----------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V  270 (460)
T KOG0285|consen  202 SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL-----------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV  270 (460)
T ss_pred             cccCceEEEecCCCeeEEEechhhhhHHHhcccc-----------ceeEEEeccccceeEEecCCcceEEEeeecccceE
Confidence            9999999999999999999999999999998887           46999999999999999999999999999999999


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ..+.+|..+|.++.+.|-...+++|+.|++|++||++.|+....+. |...+.+++.+|... +|+ ++....++-|++.
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fA-Sas~dnik~w~~p  348 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFA-SASPDNIKQWKLP  348 (460)
T ss_pred             EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhh-ccCCccceeccCC
Confidence            9999999999999999977789999999999999999999877776 778999999999764 344 4445568999999


Q ss_pred             CCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--------cCCCCEEEEEEcCCCCEEEEE
Q psy2110         309 GDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--------ASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      .+..+..+.+|...+.+++.+.|| ++++|+.+|.+.+||.+++...+..+        ..+..|.+.+|...|..|+++
T Consensus       349 ~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~  427 (460)
T KOG0285|consen  349 EGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG  427 (460)
T ss_pred             ccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence            998888899999999999998876 78889999999999999887665553        234678999999999999999


Q ss_pred             eCCCcEEEEeccc
Q psy2110         381 TGDRLIRVYNHQE  393 (622)
Q Consensus       381 ~~d~~i~i~d~~~  393 (622)
                      ..|.+|++|.-++
T Consensus       428 eadKtIk~~keDe  440 (460)
T KOG0285|consen  428 EADKTIKMYKEDE  440 (460)
T ss_pred             cCCcceEEEeccc
Confidence            9999999998763

>KOG1539|consensus

Probab=100.00  E-value=5.4e-34  Score=278.24  Aligned_cols=452  Identities=14%  Similarity=0.222  Sum_probs=342.7

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEe----------ccc--cceecccCceEEeecCCceEEEeechhhhhcCCCCCC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLS----------CPA--LELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP   69 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd----------~~~--~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~   69 (622)
                      +.|+|++=+.+--|+|+|.   .|.+|.          ...  -......|..++++..++.+.+|+......      +
T Consensus        77 ~~I~alas~~~~vy~A~g~---~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~------e  147 (910)
T KOG1539|consen   77 DKITALASDKDYVYVASGN---KIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQE------E  147 (910)
T ss_pred             CceEEEEecCceEEEecCc---EEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccc------c
Confidence            5688888776655555542   344432          222  123356789999999999999999875311      0


Q ss_pred             ccchhhhhhccccc-eeEEEEcCCC--CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeE
Q psy2110          70 EPIQKLQDLVNKTM-WKKCCFSGDG--EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT  146 (622)
Q Consensus        70 ~~~~~~~~~~~~~~-~~~~~~sp~~--~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  146 (622)
                      ...+ +........ ++ .-++|..  +.++.|+.. |.+.+|++++++.+.+++++...|                 ++
T Consensus       148 ~~l~-~~~~~~~~~~It-al~HP~TYLNKIvvGs~~-G~lql~Nvrt~K~v~~f~~~~s~I-----------------T~  207 (910)
T KOG1539|consen  148 LYLQ-STFLKVEGDFIT-ALLHPSTYLNKIVVGSSQ-GRLQLWNVRTGKVVYTFQEFFSRI-----------------TA  207 (910)
T ss_pred             cccc-ceeeeccCCcee-eEecchhheeeEEEeecC-CcEEEEEeccCcEEEEecccccce-----------------eE
Confidence            0111 111222222 33 3456653  456777765 999999999999999999999887                 69


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCE-EEEEeCCCeEEEEEcCC
Q psy2110         147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL-LAVGCNDGRIVLWDFLT  225 (622)
Q Consensus       147 ~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iwd~~~  225 (622)
                      +.=+|--..+|.|..+|+|.++++..++.+..++...           +.|+.++|..||+. +++|+..|.+.+||++.
T Consensus       208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~-----------g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  208 IEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDW-----------GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             eccCCcceEEEEeccCceEEEEEcccCcEEEEEEccc-----------cceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            9999988999999999999999999999999988764           35999999999985 56666779999999999


Q ss_pred             CceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEE-eCCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         226 RGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE----CEQKY-RFPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       226 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      .+.+..+. .|.+.|..+.|.+....+++++.|+.+++|=.+++.    .++.- .|..|..++.|.-...+.+.+++.|
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence            88887666 788999999999999999999999998888655432    22221 2677777888775555566666666


Q ss_pred             CcEEEEEe-----------------------------------------------------------------cCCceee
Q psy2110         300 HAAVLVDT-----------------------------------------------------------------DGDHQIV  314 (622)
Q Consensus       300 ~~i~~~d~-----------------------------------------------------------------~~~~~~~  314 (622)
                      .+++.+++                                                                 ++...-.
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~  436 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR  436 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence            65555543                                                                 2211100


Q ss_pred             ------cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE---ecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         315 ------PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF---KASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       315 ------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                            .+......+.+++.++.|++.+.|...|.|-+|++.+|-...++   ..|..+|++++...-++.+++++.+|.
T Consensus       437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI  516 (910)
T ss_pred             EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence                  00112345778999999999999999999999999999999888   589999999999999999999999999


Q ss_pred             EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110         386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV  465 (622)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v  465 (622)
                      +.+||..+         ...+..+   .-...+..+..+.....++.+.. +-.|+++|..+.+.++.+.||.+. |+++
T Consensus       517 lkfw~f~~---------k~l~~~l---~l~~~~~~iv~hr~s~l~a~~~d-df~I~vvD~~t~kvvR~f~gh~nr-itd~  582 (910)
T KOG1539|consen  517 LKFWDFKK---------KVLKKSL---RLGSSITGIVYHRVSDLLAIALD-DFSIRVVDVVTRKVVREFWGHGNR-ITDM  582 (910)
T ss_pred             EEEEecCC---------cceeeee---ccCCCcceeeeeehhhhhhhhcC-ceeEEEEEchhhhhhHHhhccccc-eeee
Confidence            99999983         1222222   22334455677777778888875 889999999999999999999998 9999


Q ss_pred             EECCCCCEEEEEe-CCcEEEeecCCc-----------ccccccCCCCceecccc
Q psy2110         466 VWHPVRPIIASIS-SGVVSLWAQNQV-----------ENWSAFAPDFKELDENV  507 (622)
Q Consensus       466 ~~sp~~~~l~s~~-dg~v~iw~~~~~-----------~~~~~~s~~~~~l~~~~  507 (622)
                      +|||||++|++++ |++|++||+.+.           .....|+|.|+.|++..
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVH  636 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEE
Confidence            9999999999999 999999999742           22238999999998743

>KOG0276|consensus

Probab=100.00  E-value=1e-34  Score=274.16  Aligned_cols=280  Identities=15%  Similarity=0.215  Sum_probs=257.0

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.++.|+|...+++++-++ |.+.|||.++...++.+.-..-+|                 ++..|-+..+++++|
T Consensus        12 rSdRVKsVd~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~Pv-----------------Ra~kfiaRknWiv~G   73 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPV-----------------RAAKFIARKNWIVTG   73 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeec-CeeEEEecccceeeeeeeecccch-----------------hhheeeeccceEEEe
Confidence            44557799999999999999986 999999999999999999888877                 699999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHP  238 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~  238 (622)
                      +.|..|+||+.++++.+..+..|.           ..|.+++.+|...++++++.|-.|++||.+.. .+.+++.+|...
T Consensus        74 sDD~~IrVfnynt~ekV~~FeAH~-----------DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy  142 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTGEKVKTFEAHS-----------DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY  142 (794)
T ss_pred             cCCceEEEEecccceeeEEeeccc-----------cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence            999999999999999999998886           46999999999999999999999999999864 677899999999


Q ss_pred             eeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         239 VCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       239 v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      |.+++|+| |.+.+++++-|++|++|.+.+..+..++. |...|+++.+.+.+ +-.+++|++|..+++||.++..++.+
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T  222 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT  222 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence            99999999 77899999999999999999999888888 88999999998866 34789999999999999999999999


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      +.+|...|..+.|+|.-..+++|++||+++||+..+.++..++.-.-..+.+++-.+.++.+++|...|.|.+
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999999999999999999999999999999988888888889999999998888888887776644

>KOG0295|consensus

Probab=100.00  E-value=1.2e-35  Score=263.12  Aligned_cols=290  Identities=20%  Similarity=0.334  Sum_probs=260.2

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      .....+.+|..++                 +.+-|+|+-..+++++.|++|++||..++++...+++|..          
T Consensus        99 ~l~~~l~g~r~~v-----------------t~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~----------  151 (406)
T KOG0295|consen   99 NLVQKLAGHRSSV-----------------TRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTD----------  151 (406)
T ss_pred             Cchhhhhccccce-----------------eeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccc----------
Confidence            4556667777777                 6999999999999999999999999999999999999874          


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                       .+..++|+..|++|++++.|-.+++||..+ .++++.+.+|...|.++.|-|.|.+|++++.|.+|+.|++.++-++.+
T Consensus       152 -sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t  230 (406)
T KOG0295|consen  152 -SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT  230 (406)
T ss_pred             -ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence             488999999999999999999999999987 567788889999999999999999999999999999999999999999


Q ss_pred             Ee-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC---------------CCEEEE
Q psy2110         274 YR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR---------------GQHVVT  337 (622)
Q Consensus       274 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~  337 (622)
                      +. |..-|..++.+.||. ++++++.+.++++|-+.++.+...+..|...+.+++|.|.               ++++.+
T Consensus       231 ~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  231 FPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             ccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence            98 778899999999886 8999999999999999999999999999999999998753               368999


Q ss_pred             EecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110         338 GNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (622)
                      ++.|++|++||+.++.++.++.+|...|.+++|+|.|+||+++..|+++++||++         ..++...+..  +...
T Consensus       310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~---------~~~cmk~~~a--h~hf  378 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK---------NLQCMKTLEA--HEHF  378 (406)
T ss_pred             ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec---------cceeeeccCC--Ccce
Confidence            9999999999999999999999999999999999999999999999999999999         3444555542  2334


Q ss_pred             eeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         418 WKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       418 ~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      ++++.|..+-.|+++|+- |..+++|..
T Consensus       379 vt~lDfh~~~p~VvTGsV-dqt~KvwEc  405 (406)
T KOG0295|consen  379 VTSLDFHKTAPYVVTGSV-DQTVKVWEC  405 (406)
T ss_pred             eEEEecCCCCceEEeccc-cceeeeeec
Confidence            567899999999999998 889999974

>KOG0284|consensus

Probab=100.00  E-value=5.7e-37  Score=275.23  Aligned_cols=279  Identities=18%  Similarity=0.305  Sum_probs=241.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|+++.|+++|.++++|+.+|.|++|+..-........
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a  177 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA  177 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH
Confidence            58899999999999999999999999986655556678999999999999999999999999999999977554433333


Q ss_pred             -CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         276 -FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       276 -~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                       +...|++++|+|+.. .|++++.|+.|++||....+.-..+.+|.-.+.++.|+|....|++|+.|..|++||.+++.+
T Consensus       178 hh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c  256 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC  256 (464)
T ss_pred             hhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch
Confidence             448999999999554 799999999999999999888888899999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC-eEEEe
Q psy2110         355 KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE-YVCAG  433 (622)
Q Consensus       355 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~  433 (622)
                      +.++..|...|..+.|++++++|++++.|..+++||++.         .+.+..++++  ...+.++.|+|-.. ++.+|
T Consensus       257 l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---------mkEl~~~r~H--kkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  257 LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---------MKELFTYRGH--KKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH---------hHHHHHhhcc--hhhheeeccccccccceeec
Confidence            999999999999999999999999999999999999983         2344444433  34557889999654 55566


Q ss_pred             eCCCCeEEEEECCCCeeEEEEe-cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         434 SARQHALYIWEKSVGNLVKILH-GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +. ||.|..|.+...+++..+. +|.+. |.+++|+|-|.+|++++ |.++++|.-.
T Consensus       326 g~-Dgsvvh~~v~~~~p~~~i~~AHd~~-iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  326 GS-DGSVVHWVVGLEEPLGEIPPAHDGE-IWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cC-CCceEEEeccccccccCCCcccccc-eeeeeccccceeEeecCCCcceeeeccC
Confidence            65 9999999998666666654 45555 99999999999999999 9999999874

>KOG0263|consensus

Probab=100.00  E-value=6.4e-36  Score=291.21  Aligned_cols=273  Identities=19%  Similarity=0.302  Sum_probs=237.6

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      ....+.|+.||+|+..||.|..+ ..|++|.+... .++.+++...                           ...+=+.
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~d-S~i~~~Sl~p~-kl~~lk~~~~---------------------------l~~~d~~  427 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVD-SSVRVWSLTPK-KLKKLKDASD---------------------------LSNIDTE  427 (707)
T ss_pred             cCCcceeEeecCCcchhhccccc-cEEEEEecchh-hhccccchhh---------------------------hcccccc
Confidence            34456788999999988777765 89999988644 2233332211                           1122234


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      +.|-.+.+-|-.+......+.+|..           +|..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|
T Consensus       428 sad~~~~~~D~~~~~~~~~L~GH~G-----------PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV  496 (707)
T KOG0263|consen  428 SADVDVDMLDDDSSGTSRTLYGHSG-----------PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV  496 (707)
T ss_pred             ccchhhhhccccCCceeEEeecCCC-----------ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence            4444566666666666666777764           59999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      +.+.|+|-|-+||+++.|++.++|......+++.+. |-+.|.|+.|+|+.. ++++|+.|.++++||..++..++.+.+
T Consensus       497 wdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~G  575 (707)
T KOG0263|consen  497 WDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTG  575 (707)
T ss_pred             eeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecC
Confidence            999999999999999999999999999999998887 889999999999876 688999999999999999999999999


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         319 DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      |...|.+++|+|+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.|+.+|..||+++.|.+|++||+..
T Consensus       576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999984

>KOG0275|consensus

Probab=100.00  E-value=1.2e-36  Score=264.90  Aligned_cols=293  Identities=19%  Similarity=0.339  Sum_probs=254.5

Q ss_pred             hhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          77 DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        77 ~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      .+.....+-|..|||||+||++|+.| |.|.|||..+|+..+.++.....-+   ..+      -.+|.|+.||.|..+|
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~f---MMm------d~aVlci~FSRDsEMl  278 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNF---MMM------DDAVLCISFSRDSEML  278 (508)
T ss_pred             ecccccchhheeeCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcce---eec------ccceEEEeecccHHHh
Confidence            34455667789999999999999986 9999999999998877664433221   011      1234699999999999


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      |+|+.||.|++|.+.+|.+++.+.....          ..|+|+.|+.|+..+++++.|.++++.-+.+|++++.+++|.
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFdrAHt----------kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs  348 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFDRAHT----------KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS  348 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhhhhhc----------cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence            9999999999999999999999873322          248999999999999999999999999999999999999999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      ..|+...|++||.++++++.||+|++|+..+.+|+.+++   ...+|.++...|.++.-+++|...+++++.++...- +
T Consensus       349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-V  427 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-V  427 (508)
T ss_pred             ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-E
Confidence            999999999999999999999999999999999999998   346799999999998889999999999999987642 2


Q ss_pred             ecc---cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         314 VPI---DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       314 ~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      ..+   ....+...+++.+|.|.++++.++|+.++.|.+.+|++.+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus       428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            322   23345566788999999999999999999999999999999999999999999999999999999999999995

>KOG0285|consensus

Probab=100.00  E-value=1.7e-35  Score=261.26  Aligned_cols=291  Identities=15%  Similarity=0.295  Sum_probs=259.7

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      ++.+.+.+|.+.|                 +|+++.|-+.++++|+.|++|+|||+.+|++..++.+|..          
T Consensus       142 Kl~rVi~gHlgWV-----------------r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~----------  194 (460)
T KOG0285|consen  142 KLYRVISGHLGWV-----------------RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE----------  194 (460)
T ss_pred             eehhhhhhccceE-----------------EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh----------
Confidence            3445667777777                 7999999999999999999999999999999999988863          


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                       .|..+++|+...||++++.|+.|+.||++..+.++.+.+|-..|.+++..|.-..|++|+.|.++++||+++...+..+
T Consensus       195 -~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l  273 (460)
T KOG0285|consen  195 -TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL  273 (460)
T ss_pred             -eeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe
Confidence             5889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      . |..+|.++.+.|.+. .+++|+.|++|++||++.++....+..|...+.+++.+|....+++++.|. |+-|++..+.
T Consensus       274 ~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~  351 (460)
T KOG0285|consen  274 SGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE  351 (460)
T ss_pred             cCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccc
Confidence            8 999999999998776 488999999999999999999999999999999999999999999998886 9999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee------ccccceeeeeEEEcCCC
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ------DLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~spdg  427 (622)
                      .+..+.+|...|++++...|+ .+++|+.+|.+.+||.+..         ...+..+      .......+.+.||...|
T Consensus       352 f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg---------~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  352 FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG---------HNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC---------cccccccccccCCccccccceeEEeecccC
Confidence            999999999999999998876 5889999999999999842         2222221      12233566788999999


Q ss_pred             CeEEEeeCCCCeEEEEECC
Q psy2110         428 EYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~  446 (622)
                      ..|+++.. |.+|++|.-.
T Consensus       422 ~rlit~ea-dKtIk~~keD  439 (460)
T KOG0285|consen  422 SRLITGEA-DKTIKMYKED  439 (460)
T ss_pred             ceEEeccC-CcceEEEecc
Confidence            99999998 8899999754

>KOG0316|consensus

Probab=100.00  E-value=1.4e-34  Score=241.11  Aligned_cols=288  Identities=20%  Similarity=0.343  Sum_probs=247.8

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                      ..+.+.++.++|                 .++.|+-||+|.++++.|.+|++|+...|.+++++.+|..+          
T Consensus         9 r~~~l~~~qgaV-----------------~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E----------   61 (307)
T KOG0316|consen    9 RLSILDCAQGAV-----------------RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE----------   61 (307)
T ss_pred             hceeecccccce-----------------EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce----------
Confidence            345667788877                 59999999999999999999999999999999999998754          


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE--CEQK  273 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~  273 (622)
                       |..++.+.|+..+++++.|..+.+||+++|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++..  +++.
T Consensus        62 -VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   62 -VLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             -eeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence             8889999999999999999999999999999999999999999999999999999999999999999987642  3333


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +.                                          ...+.+.++.  -.+..|++|+.||+++.||++.|+
T Consensus       141 ld------------------------------------------ea~D~V~Si~--v~~heIvaGS~DGtvRtydiR~G~  176 (307)
T KOG0316|consen  141 LD------------------------------------------EAKDGVSSID--VAEHEIVAGSVDGTVRTYDIRKGT  176 (307)
T ss_pred             hh------------------------------------------hhcCceeEEE--ecccEEEeeccCCcEEEEEeecce
Confidence            32                                          1122232332  235678899999999999999998


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEe
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG  433 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  433 (622)
                      +...+-+  .+|+++.|+++++..++++.|+++++.|-.         ..+.+..+.++.+...-..++++.....+++|
T Consensus       177 l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~---------tGklL~sYkGhkn~eykldc~l~qsdthV~sg  245 (307)
T KOG0316|consen  177 LSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKE---------TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG  245 (307)
T ss_pred             eehhhcC--CcceeEEecCCCCEEEEeeccceeeecccc---------hhHHHHHhcccccceeeeeeeecccceeEEec
Confidence            7765554  579999999999999999999999999987         55778888888888888899999999999999


Q ss_pred             eCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110         434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~  487 (622)
                      +. ||.+++||+..+..+..+..+..-.|.+++++|....++++.++.+..|.-
T Consensus       246 SE-DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  246 SE-DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             cC-CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceeceee
Confidence            97 999999999999999999887765589999999999888888777888764

>KOG0266|consensus

Probab=100.00  E-value=1.3e-34  Score=291.64  Aligned_cols=282  Identities=23%  Similarity=0.425  Sum_probs=252.5

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ...+.++.|||+|+++++++.+ +.+++|++.+++  ..+.+.+|...|                 ..++|+|+++++++
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v-----------------~~~~fs~d~~~l~s  220 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGV-----------------SDVAFSPDGSYLLS  220 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCC-CcEEEeecccccchhhccccccccce-----------------eeeEECCCCcEEEE
Confidence            4567789999999999999876 899999998777  778888999888                 59999999999999


Q ss_pred             eeCCCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110         159 GCNDGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       159 ~~~dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      ++.|++|+|||+ ..+..++.+.+|..           .|++++|+|+|+++++|+.|++|++||+.++++...+.+|..
T Consensus       221 ~s~D~tiriwd~~~~~~~~~~l~gH~~-----------~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDDGRNLKTLKGHST-----------YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             ecCCceEEEeeccCCCeEEEEecCCCC-----------ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence            999999999999 55588889988874           589999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEe-CCC--CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGE--CEQKYR-FPS--PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      .|++++|++++++|++++.|+.|++||+.++.  +...+. ...  ++..++|+|++. +++++..++.+++||+.....
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGKS  368 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCCcc
Confidence            99999999999999999999999999999999  455554 222  589999999998 577888999999999999988


Q ss_pred             eecccCCCCc---eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC-CCCEEEEEEcCCCCEEEEEe--CCCcE
Q psy2110         313 IVPIDEDSDL---SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS-TTAIKSIEFARRGNCLLVNT--GDRLI  386 (622)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~--~d~~i  386 (622)
                      ...+..|...   +.....++.++++++|+.|+.|++|++.++..+..+.+| ...+..+.++|..+++++++  .|+.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~  448 (456)
T KOG0266|consen  369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI  448 (456)
T ss_pred             eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence            8888877764   334455788999999999999999999999999999999 89999999999999999988  68899


Q ss_pred             EEEecc
Q psy2110         387 RVYNHQ  392 (622)
Q Consensus       387 ~i~d~~  392 (622)
                      ++|...
T Consensus       449 ~~w~~~  454 (456)
T KOG0266|consen  449 RLWKYD  454 (456)
T ss_pred             EEecCC
Confidence            999764

>KOG0265|consensus

Probab=100.00  E-value=3e-34  Score=247.89  Aligned_cols=283  Identities=16%  Similarity=0.255  Sum_probs=244.6

Q ss_pred             hhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcC-CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          77 DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        77 ~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      ...+.+.++.+.|+|+|.+||+|+.| ..|.+|++. ..+-...+++|.+.|                 ..+.|.+|++.
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAV-----------------M~l~~~~d~s~  104 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAV-----------------MELHGMRDGSH  104 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCc-ceEEEEeccccccceeeecccccee-----------------EeeeeccCCCE
Confidence            33455668899999999999999986 899999964 455667889999998                 59999999999


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                      |++++.|++|+.||.++|+..+.++.|..           .+..+.-+.-|. ++.+++.|+++++||+++..+++++..
T Consensus       105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----------~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~  173 (338)
T KOG0265|consen  105 ILSCGTDKTVRGWDAETGKRIRKHKGHTS-----------FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN  173 (338)
T ss_pred             EEEecCCceEEEEecccceeeehhccccc-----------eeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence            99999999999999999999999988863           466666444444 567788899999999999888887753


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC---
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD---  310 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---  310 (622)
                       ...++++.|..++..+.+|+-|+.|++||++.+.....+. |..+|+.+..+|+|. .+.+-+.|..+++||++..   
T Consensus       174 -kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~  251 (338)
T KOG0265|consen  174 -KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS  251 (338)
T ss_pred             -ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC
Confidence             4689999999999999999999999999999999999988 889999999999998 5778899999999999853   


Q ss_pred             -ceeecccCCC----CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         311 -HQIVPIDEDS----DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       311 -~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                       +++..+.++.    .....++|+|++..+.+|+.|..+++||......+..+.+|.+.|++++|+|....|.+++.|.+
T Consensus       252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~  331 (338)
T KOG0265|consen  252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT  331 (338)
T ss_pred             CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence             3344444433    33456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy2110         386 IRVYN  390 (622)
Q Consensus       386 i~i~d  390 (622)
                      |++=.
T Consensus       332 i~lge  336 (338)
T KOG0265|consen  332 IYLGE  336 (338)
T ss_pred             eEeec
Confidence            98743

>KOG0266|consensus

Probab=100.00  E-value=3.9e-34  Score=288.14  Aligned_cols=282  Identities=21%  Similarity=0.395  Sum_probs=252.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV-LTGECE  271 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~  271 (622)
                      ..|.++.|+++|+.+++++.++.+++|+..+.+  ..+.+.+|...|..++|+|+++++++++.|++|+|||+ ..+.++
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~  239 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL  239 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence            358899999999999999999999999997777  77778899999999999999999999999999999999 555888


Q ss_pred             EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         272 QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       272 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      +.+. |...|++++|+|++ .++++|+.|+.|++||+++......+..|...+.+++|++++++|++++.|+.|++||+.
T Consensus       240 ~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  240 KTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             EEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence            8886 89999999999999 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccc--EEEEEecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc-eeeeeEEEcC
Q psy2110         351 ALE--LKASFKASTTA--IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSG  425 (622)
Q Consensus       351 ~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp  425 (622)
                      ++.  ++..+..+...  ++++.|+|++.++++++.|+.+++||+.         .......+..+... ..+.+..+++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~  389 (456)
T KOG0266|consen  319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR---------SGKSVGTYTGHSNLVRCIFSPTLST  389 (456)
T ss_pred             CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc---------CCcceeeecccCCcceeEecccccC
Confidence            999  56777766655  9999999999999999999999999998         33455555555444 3444566788


Q ss_pred             CCCeEEEeeCCCCeEEEEECCCCeeEEEEecC-CCCceeEEEECCCCCEEEEEe---CCcEEEeecC
Q psy2110         426 DGEYVCAGSARQHALYIWEKSVGNLVKILHGT-KGELLLDVVWHPVRPIIASIS---SGVVSLWAQN  488 (622)
Q Consensus       426 dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~---dg~v~iw~~~  488 (622)
                      .|+++++|+. |+.|++|+..++..+..+.+| ... +..+.|+|...++++++   |+.+++|..+
T Consensus       390 ~~~~i~sg~~-d~~v~~~~~~s~~~~~~l~~h~~~~-~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  390 GGKLIYSGSE-DGSVYVWDSSSGGILQRLEGHSKAA-VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCeEEEEeC-CceEEEEeCCccchhhhhcCCCCCc-eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999999997 999999999999999999999 554 99999999999999987   7899999864

>KOG2106|consensus

Probab=100.00  E-value=2.6e-32  Score=251.66  Aligned_cols=408  Identities=19%  Similarity=0.320  Sum_probs=295.4

Q ss_pred             CCcceEEEEccCCcEEEeccCCC--------eEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKG--------KVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI   72 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg--------~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~   72 (622)
                      ++.|.|++.+||.-.+|+|-..|        .||+||..+.+                ++.+                  
T Consensus       104 ~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------------TL~V------------------  149 (626)
T KOG2106|consen  104 NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------------TLHV------------------  149 (626)
T ss_pred             CCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------------eeee------------------
Confidence            47899999999999999885544        35555532111                1111                  


Q ss_pred             hhhhhhccccceeEEEEcCC--CCEEEEec-CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          73 QKLQDLVNKTMWKKCCFSGD--GEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        73 ~~~~~~~~~~~~~~~~~sp~--~~~l~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                        +.  ..+.++.|++||+-  |.+|++.. ..+..+.|||+..+......+..+..++                 ...|
T Consensus       150 --~g--~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~-----------------~a~F  208 (626)
T KOG2106|consen  150 --IG--FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVF-----------------LATF  208 (626)
T ss_pred             --ec--cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEE-----------------EEEe
Confidence              11  23456789999973  55665543 2347899999998888777777666663                 8899


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA  229 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~  229 (622)
                      +|.+.-|+.....+.+.+|+.+.+...++.......+.       ..|.|++|.++|. +++|..+|.|.||+..+.+..
T Consensus       209 HPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-------k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~  280 (626)
T KOG2106|consen  209 HPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-------KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS  280 (626)
T ss_pred             ccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-------eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence            99776554444558999999988866554433222211       3589999999997 559999999999999888887


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------------------------------------
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE----------------------------------------  269 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----------------------------------------  269 (622)
                      +....|.+.|.+++...+|. |++|+.|+.|..||-.-.+                                        
T Consensus       281 k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~  359 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG  359 (626)
T ss_pred             eEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence            77779999999999999996 5569999999999832100                                        


Q ss_pred             -EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         270 -CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       270 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                       .+..+.|......++.+|+.+ ++++++.|+.+++|+   .+++.-...-.....++.|+|.| .++.|+..|...+.|
T Consensus       360 f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  360 FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN---DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLD  434 (626)
T ss_pred             ceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc---CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence             001111344567788888766 688999999999999   22222222335667799999999 999999999999999


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      .++...+..-.. ..+++.++|+|+|.+||+++.|+.|++|.+..        ......+...... .+++.+.||+|++
T Consensus       435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~--------~g~~y~r~~k~~g-s~ithLDwS~Ds~  504 (626)
T KOG2106|consen  435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA--------NGRKYSRVGKCSG-SPITHLDWSSDSQ  504 (626)
T ss_pred             cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC--------CCcEEEEeeeecC-ceeEEeeecCCCc
Confidence            999666655444 89999999999999999999999999999884        3344444444444 7889999999999


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeE-----------------EEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLV-----------------KILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~-----------------~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      ||.+-+. |-.|-.|.....+..                 ..+-+.++..|..++-+...+++|++. .|.|+++...
T Consensus       505 ~~~~~S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  505 FLVSNSG-DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             eEEeccC-ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence            9999887 778999943321111                 111122333366666677777888887 6888888764

>KOG0292|consensus

Probab=100.00  E-value=2.8e-33  Score=274.45  Aligned_cols=348  Identities=14%  Similarity=0.222  Sum_probs=291.0

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      .+..++|+|...+++++-.. |.|++||.+-+.++..|..|.++|                 +.+.|+|++.++++|+.|
T Consensus        11 RvKglsFHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpV-----------------Rgv~FH~~qplFVSGGDD   72 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPV-----------------RGVDFHPTQPLFVSGGDD   72 (1202)
T ss_pred             cccceecCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCcc-----------------ceeeecCCCCeEEecCCc
Confidence            34579999999999999876 999999999999999999999999                 699999999999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSI  242 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  242 (622)
                      -.|+||+..+.+++.++.+|.           ..|..+.|++.-.++++++.|.+|+||+..+++++..+++|...|.|.
T Consensus        73 ykIkVWnYk~rrclftL~GHl-----------DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   73 YKIKVWNYKTRRCLFTLLGHL-----------DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA  141 (1202)
T ss_pred             cEEEEEecccceehhhhcccc-----------ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence            999999999999999999987           569999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCc---------------------------EE--EEEe-CCCCeEEEEEeCCCCeE
Q psy2110         243 SWSRNGYKIISASTDNNVCIWDVLTGE---------------------------CE--QKYR-FPSPILKVQFHPRNDHM  292 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d~~i~iwd~~~~~---------------------------~~--~~~~-~~~~v~~~~~~~~~~~~  292 (622)
                      +|+|....++++|-|.+||+||+..-+                           .+  ..+. |...|+.++|+|.-+ +
T Consensus       142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-l  220 (1202)
T KOG0292|consen  142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-L  220 (1202)
T ss_pred             ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-e
Confidence            999988999999999999999985311                           11  1122 677899999999877 7


Q ss_pred             EEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         293 FLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                      +++|++|..+++|.+...+  .+-+..+|...|.++-|+|...++++.++|++|++||+...+.+++++..+.....++-
T Consensus       221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa  300 (1202)
T KOG0292|consen  221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA  300 (1202)
T ss_pred             EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence            9999999999999997543  45677889999999999999999999999999999999999999999988899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110         371 ARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL  450 (622)
Q Consensus       371 s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~  450 (622)
                      +|..++++. +.|+-+.+|.+..         .++                ++.-.++.|...-  +..|+-+|+.+.+-
T Consensus       301 hP~lNLfAA-gHDsGm~VFkleR---------Erp----------------a~~v~~n~LfYvk--d~~i~~~d~~t~~d  352 (1202)
T KOG0292|consen  301 HPELNLFAA-GHDSGMIVFKLER---------ERP----------------AYAVNGNGLFYVK--DRFIRSYDLRTQKD  352 (1202)
T ss_pred             cCCcceeee-ecCCceEEEEEcc---------cCc----------------eEEEcCCEEEEEc--cceEEeeecccccc
Confidence            999996655 4566677887762         111                2222344555554  66899999987543


Q ss_pred             --EEEEecCC--CCceeEEEECCCCCEEEEEe---CCcEEEeecC
Q psy2110         451 --VKILHGTK--GELLLDVVWHPVRPIIASIS---SGVVSLWAQN  488 (622)
Q Consensus       451 --~~~~~~~~--~~~v~~v~~sp~~~~l~s~~---dg~v~iw~~~  488 (622)
                        +..++...  -.++.++.++|....+..++   .|...++.+.
T Consensus       353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip  397 (1202)
T KOG0292|consen  353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP  397 (1202)
T ss_pred             ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence              33444332  23589999999887555553   4666677664

>KOG0293|consensus

Probab=100.00  E-value=1.7e-34  Score=259.55  Aligned_cols=292  Identities=17%  Similarity=0.233  Sum_probs=244.9

Q ss_pred             cchhhhhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC---ceEEEEeccCcceeEEEEeecCccccccceeE
Q psy2110          71 PIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG---NLVKILHGTKGELLLDVVEFDGALDCISLAVT  146 (622)
Q Consensus        71 ~~~~~~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~  146 (622)
                      +.+..+.+..| ..|--+.||++|+|||+++.| .+..+|.+...   +..+++.+|..+|.                 .
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD-~Taiiw~v~~d~~~kl~~tlvgh~~~V~-----------------y  274 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKD-STAIIWIVVYDVHFKLKKTLVGHSQPVS-----------------Y  274 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCC-ceEEEEEEecCcceeeeeeeecccCceE-----------------E
Confidence            33444444444 334568999999999999986 89999987544   45788999999994                 9


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy2110         147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR  226 (622)
Q Consensus       147 ~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~  226 (622)
                      +.||||.++|++|+.+..+++||..+|.....+.....          ..+.+++|.|||..+++|+.|+.+..||++. 
T Consensus       275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~----------~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-  343 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG----------FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-  343 (519)
T ss_pred             EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcC----------CCcceeEEccCCceeEecCCCCcEEEecCCc-
Confidence            99999999999999999999999999988877765421          3478999999999999999999999999854 


Q ss_pred             ceEEEeccC-CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         227 GIAKIISAH-MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       227 ~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      ......++- ...|.+++.++||+++++.+.|..|++++..+......+....++++++.+.+++ ++++.-.+..+++|
T Consensus       344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLW  422 (519)
T ss_pred             chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEe
Confidence            344444432 2569999999999999999999999999999887777778889999999999987 67777888999999


Q ss_pred             EecCCceeecccCCCCc--eEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-CEEEEEe
Q psy2110         306 DTDGDHQIVPIDEDSDL--SIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-NCLLVNT  381 (622)
Q Consensus       306 d~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~  381 (622)
                      |+.....+..+.+|...  +..-+|.- +..++++|++|+.|+||+..+++++..+.+|...|++++|+|.. .++|+++
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas  502 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS  502 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence            99988878888777644  34445554 44899999999999999999999999999999999999999965 5789999


Q ss_pred             CCCcEEEEecc
Q psy2110         382 GDRLIRVYNHQ  392 (622)
Q Consensus       382 ~d~~i~i~d~~  392 (622)
                      .||+||||...
T Consensus       503 DDgtIRIWg~~  513 (519)
T KOG0293|consen  503 DDGTIRIWGPS  513 (519)
T ss_pred             CCCeEEEecCC
Confidence            99999999876

>KOG0282|consensus

Probab=100.00  E-value=1.1e-35  Score=272.88  Aligned_cols=285  Identities=18%  Similarity=0.289  Sum_probs=248.6

Q ss_pred             hhhhccc-cceeEEEEcC-CCCEEEEecCCCCeEEEEEcCC-CceEEEEeccCcceeEEEEeecCccccccceeEEEEcC
Q psy2110          75 LQDLVNK-TMWKKCCFSG-DGEYVCAGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK  151 (622)
Q Consensus        75 ~~~~~~~-~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~  151 (622)
                      +..+.+| .++.++.|.| .+.+|++++.| +.|+||++-. +++++++.+|..+|                 ..++|+.
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~V-----------------rd~~~s~  268 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPV-----------------RDASFNN  268 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhh-----------------hhhhccc
Confidence            3444455 4577889999 78888888875 9999999965 89999999999999                 5999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      +|..+++++.|+.|++||+++|+++..+....            .+.|+.|+|++ +.+++|+.|+.|+.||+++++.++
T Consensus       269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             cCCeeeeeecceeeeeeccccceEEEEEecCC------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence            99999999999999999999999999887664            36899999999 889999999999999999999999


Q ss_pred             EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         231 IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       231 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      .+..|-+.|..+.|-++|+++++.+.|++++||+.+.+-.++.+.  ......++..+|+++ .+++-+.++.+.++.+.
T Consensus       337 eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  337 EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecc
Confidence            999999999999999999999999999999999999887776654  334567889999988 57788899999999876


Q ss_pred             CCc---eeecccCC--CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-CEEEEEeC
Q psy2110         309 GDH---QIVPIDED--SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-NCLLVNTG  382 (622)
Q Consensus       309 ~~~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~  382 (622)
                      ..-   ....+.+|  .+....+.|||||.+|++|+.+|.+.+||.++-+++..++.|...+..+.|+|.. ..+|+++.
T Consensus       416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w  495 (503)
T KOG0282|consen  416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW  495 (503)
T ss_pred             cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc
Confidence            442   22344444  3556678999999999999999999999999999999999999999999999965 47889999


Q ss_pred             CCcEEEEe
Q psy2110         383 DRLIRVYN  390 (622)
Q Consensus       383 d~~i~i~d  390 (622)
                      ||.|++|+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.6e-33  Score=267.88  Aligned_cols=281  Identities=24%  Similarity=0.421  Sum_probs=251.1

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++|+|++++|++++.+ |.|++|++.+++....+..|...+                 ..+.|+|++++|+++
T Consensus         8 h~~~i~~~~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~   69 (289)
T cd00200           8 HTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPV-----------------RDVAASADGTYLASG   69 (289)
T ss_pred             cCCCEEEEEEcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcce-----------------eEEEECCCCCEEEEE
Confidence            44667899999999999999875 999999999998888888888877                 499999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      +.+|.|++|++.+++....+..+.           ..+.++.|+++++++++++.++.+.+|++.+++....+..|...+
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i  138 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTGHT-----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV  138 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEeccC-----------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence            999999999999876666665443           248999999999999888889999999999888888898999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      .+++|+|++.++++++.++.|++||+++++....+. +...+.++.|+|++.. +++++.++.+++||++....+..+..
T Consensus       139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~  217 (289)
T cd00200         139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTGKCLGTLRG  217 (289)
T ss_pred             EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE-EEEecCCCcEEEEECCCCceecchhh
Confidence            999999999888888889999999999888888777 5568999999999875 45555599999999998888888878


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         319 DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      +...+.++.|++++.++++++.+|.|++|++.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus       218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888999999999988988888899999999999999999999999999999999999999999999999996

>KOG0645|consensus

Probab=100.00  E-value=4.6e-33  Score=237.13  Aligned_cols=292  Identities=17%  Similarity=0.328  Sum_probs=232.7

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCc---ccccccccccCCCccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGAL  191 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~  191 (622)
                      .++.+++|.+.+                 +.++|+|- |..||+|+.|+.|++|+...+   .+...+.....       
T Consensus         6 ~~~~~~gh~~r~-----------------W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk-------   61 (312)
T KOG0645|consen    6 LEQKLSGHKDRV-----------------WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK-------   61 (312)
T ss_pred             eEEeecCCCCcE-----------------EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch-------
Confidence            456788898887                 69999998 889999999999999998853   22222222111       


Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         192 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       192 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                         ..|.+++|+|.|++|++++.|.++.||.-..+  +++..+.+|...|.+++|+++|++||+++.|+.|.||.+..+.
T Consensus        62 ---rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   62 ---RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             ---heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence               35899999999999999999999999986644  5788999999999999999999999999999999999998553


Q ss_pred             ---EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC---CceeecccCCCCceEEEEEeeCCCEEEEEecCC
Q psy2110         270 ---CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG---DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG  342 (622)
Q Consensus       270 ---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  342 (622)
                         +...++ |...|..+.|+|... +|++++.|++|++|.-..   -.....+.+|...+.+++|++.|..|++++.|+
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence               555555 889999999999765 899999999999998762   267889999999999999999999999999999


Q ss_pred             eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEE
Q psy2110         343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC  422 (622)
Q Consensus       343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (622)
                      +++||-..+.-    -..|...+..+.|.  ...|++++.|+.|++|.-...    ..+..-.+.......+...++++.
T Consensus       218 tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~----~d~p~~~l~~~~~~aHe~dVNsV~  287 (312)
T KOG0645|consen  218 TVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS----PDEPSWNLLAKKEGAHEVDVNSVQ  287 (312)
T ss_pred             ceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCC----CCCchHHHHHhhhcccccccceEE
Confidence            99999865221    12466889999998  446999999999999986621    000000111112233445788999


Q ss_pred             EcCC-CCeEEEeeCCCCeEEEEECC
Q psy2110         423 FSGD-GEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       423 ~spd-g~~l~~~~~~d~~i~iwd~~  446 (622)
                      |.|. ...|++++. ||.|++|.+.
T Consensus       288 w~p~~~~~L~s~~D-DG~v~~W~l~  311 (312)
T KOG0645|consen  288 WNPKVSNRLASGGD-DGIVNFWELE  311 (312)
T ss_pred             EcCCCCCceeecCC-CceEEEEEec
Confidence            9995 567777775 9999999864

>KOG0645|consensus

Probab=100.00  E-value=2.6e-33  Score=238.60  Aligned_cols=281  Identities=17%  Similarity=0.269  Sum_probs=226.4

Q ss_pred             CCcceEEEEccC-CcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           1 SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         1 t~~V~~~~fspd-g~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      ++.|..++|+|- |..||||+.|..||||+...               .+.    |...               .+..-.
T Consensus        14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~---------------~~s----~~ck---------------~vld~~   59 (312)
T KOG0645|consen   14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS---------------GDS----WTCK---------------TVLDDG   59 (312)
T ss_pred             CCcEEEEEeccCCceEEEeecCCceEEEEecCC---------------CCc----EEEE---------------Eecccc
Confidence            467889999998 88999999999999998531               111    1111               011112


Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      +...+.+++|+|.|++||+++.| .++.||.-..+  +++..+.||..+|.                 +++|+++|.+||
T Consensus        60 hkrsVRsvAwsp~g~~La~aSFD-~t~~Iw~k~~~efecv~~lEGHEnEVK-----------------~Vaws~sG~~LA  121 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHGRYLASASFD-ATVVIWKKEDGEFECVATLEGHENEVK-----------------CVAWSASGNYLA  121 (312)
T ss_pred             chheeeeeeecCCCcEEEEeecc-ceEEEeecCCCceeEEeeeecccccee-----------------EEEEcCCCCEEE
Confidence            44556789999999999999986 99999986543  68899999999994                 999999999999


Q ss_pred             EeeCCCcEEEEecCCc---ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC---CCceEEE
Q psy2110         158 VGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL---TRGIAKI  231 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~---~~~~~~~  231 (622)
                      ++++|+.|-||.+..+   ++...++.|.+           .|..+.|+|...+|++++.|.+|++|.-.   .-.+.++
T Consensus       122 TCSRDKSVWiWe~deddEfec~aVL~~Htq-----------DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t  190 (312)
T KOG0645|consen  122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----------DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT  190 (312)
T ss_pred             EeeCCCeEEEEEecCCCcEEEEeeeccccc-----------cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence            9999999999998754   45666777764           37889999999999999999999999876   2357899


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-  310 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  310 (622)
                      +.+|...|.+++|++.|..|++++.|++++||-..+.   -...+...++.+.|. ++  ++++++.|+.|++|..... 
T Consensus       191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSP  264 (312)
T ss_pred             ecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999986521   112266788999998 33  7899999999999987642 


Q ss_pred             -ce-----eecccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCC
Q psy2110         311 -HQ-----IVPIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       311 -~~-----~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~  350 (622)
                       .+     ...-..|...|.++.|+|. ..+|++|+.||.|++|.+.
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence             11     1233467888999999995 6899999999999999864

>KOG0292|consensus

Probab=100.00  E-value=7.1e-32  Score=264.62  Aligned_cols=435  Identities=15%  Similarity=0.223  Sum_probs=309.8

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      |.+|-.++|+|..-++.++-..|.|++||-+=..+.               -+.+.++++|+.|-.|++|++.       
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-------   81 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-------   81 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-------
Confidence            467889999999999999999999999997654333               3356789999999999999997       


Q ss_pred             CCCCccchhhhhhccccc-eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccce
Q psy2110          66 DGDPEPIQKLQDLVNKTM-WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA  144 (622)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v  144 (622)
                           ..+.+.++.+|.. +..+.|++.-.+|+++|. |.+|+||++.+++++..+.||..-|                 
T Consensus        82 -----~rrclftL~GHlDYVRt~~FHheyPWIlSASD-DQTIrIWNwqsr~~iavltGHnHYV-----------------  138 (1202)
T KOG0292|consen   82 -----TRRCLFTLLGHLDYVRTVFFHHEYPWILSASD-DQTIRIWNWQSRKCIAVLTGHNHYV-----------------  138 (1202)
T ss_pred             -----cceehhhhccccceeEEeeccCCCceEEEccC-CCeEEEEeccCCceEEEEecCceEE-----------------
Confidence                 4455666667755 558899999999999996 4899999999999999999999988                 


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccc--------ccC-CCccccc---------ccccceEEEEECCCC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA--------HMH-PEFDGAL---------DCISLAVTCAFNKRG  206 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--------~~~-~~~~~~~---------~~~~~v~~~~~s~~g  206 (622)
                      .|..|+|...+++++|-|.+|||||+..-+....-.+        +.. ....+..         .+...|..++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            5999999999999999999999999865322211111        000 0000000         112357889999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEE
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKV  283 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~  283 (622)
                      .++++|+.|..|++|.+..-+  .+-+.++|.+.|.++-|+|...+|++.+.|++|++||+...+.+++++ .......+
T Consensus       219 pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l  298 (1202)
T KOG0292|consen  219 PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL  298 (1202)
T ss_pred             ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence            999999999999999987544  345678999999999999999999999999999999999999999998 45788999


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEEEEecC
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKASFKAS  361 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~  361 (622)
                      +.+|..+  +++++.|+.+.+|.+...++..            +.+  +..|+-.- +..|+.+|+.+.+  .+..++..
T Consensus       299 aahP~lN--LfAAgHDsGm~VFkleRErpa~------------~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~  361 (1202)
T KOG0292|consen  299 AAHPELN--LFAAGHDSGMIVFKLERERPAY------------AVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRP  361 (1202)
T ss_pred             EecCCcc--eeeeecCCceEEEEEcccCceE------------EEc--CCEEEEEc-cceEEeeeccccccceeEeccCC
Confidence            9999887  4555667777777776443321            222  23333332 7789999998755  34444433


Q ss_pred             ---CCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccccCCC--------CC------------------CCcceeee
Q psy2110         362 ---TTAIKSIEFARRGNCLLVNT--GDRLIRVYNHQEVLNAGKD--------GD------------------PEPIQKLQ  410 (622)
Q Consensus       362 ---~~~i~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~--------~~------------------~~~~~~~~  410 (622)
                         ..+.+++.++|....++.++  ..+.--++.+.........        |.                  ...++.+.
T Consensus       362 g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~  441 (1202)
T KOG0292|consen  362 GTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLK  441 (1202)
T ss_pred             CcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEeccc
Confidence               36788999999877655553  2445555554421111000        00                  00000010


Q ss_pred             ccc-----cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEe
Q psy2110         411 DLV-----NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLW  485 (622)
Q Consensus       411 ~~~-----~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw  485 (622)
                      ...     .......+-+...|.+|+...   ..|.+||+..++.+..++...   |.-+.||+|...+|.-+-.+|.|.
T Consensus       442 N~vtkkl~~~~~~~~IF~ag~g~lll~~~---~~v~lfdvQq~~~~~si~~s~---vkyvvws~dm~~vAll~Kh~i~i~  515 (1202)
T KOG0292|consen  442 NKVTKKLLLPESTDDIFYAGTGNLLLRSP---DSVTLFDVQQKKKVGSIKVSK---VKYVVWSNDMSRVALLSKHTITIA  515 (1202)
T ss_pred             chhhhcccCcccccceeeccCccEEEEcC---CeEEEEEeecceEEEEEecCc---eeEEEEcCccchhhhcccceEEEE
Confidence            000     001112334444555554433   369999999888888887654   889999999888777766666666


Q ss_pred             ecC
Q psy2110         486 AQN  488 (622)
Q Consensus       486 ~~~  488 (622)
                      +.+
T Consensus       516 ~kk  518 (1202)
T KOG0292|consen  516 DKK  518 (1202)
T ss_pred             ecc
Confidence            643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-32  Score=264.66  Aligned_cols=278  Identities=23%  Similarity=0.447  Sum_probs=246.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ..|.+++|+|++++|++++.+|.+++|++.+++....+..|...+..+.|++++++|++++.+|.|++|++.+++....+
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            45899999999999999999999999999998888889999999999999999999999999999999999988777777


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      . +...+.++.|++++. ++++++.++.+.+|++.+......+..|...+.++.|+|++.++++++.++.|++||+++++
T Consensus        90 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  168 (289)
T cd00200          90 TGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK  168 (289)
T ss_pred             eccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence            6 666899999999854 67777779999999999888888888888899999999999999998889999999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEe
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG  433 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  433 (622)
                      .+..+..|...+.++.|+|+++.+++++.++.|++||+..         ...+..+..  ....+.+++|+|++.+++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST---------GKCLGTLRG--HENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC---------Cceecchhh--cCCceEEEEEcCCCcEEEEE
Confidence            9999999988999999999999999999999999999983         223333322  22366788999998888888


Q ss_pred             eCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      +. ++.|++|++.+++.+..+.+|... |.+++|+|++++|++++ ||.+++|+
T Consensus       238 ~~-~~~i~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SE-DGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cC-CCcEEEEEcCCceeEEEccccCCc-EEEEEECCCCCEEEEecCCCeEEecC
Confidence            85 899999999999999999988776 99999999999999999 99999996

>KOG0643|consensus

Probab=100.00  E-value=5.6e-34  Score=242.03  Aligned_cols=280  Identities=16%  Similarity=0.251  Sum_probs=241.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      +++.+.|+.+|.+|++++.|....+|-..+|+.+.++.+|.+.|+++..+.+.+++++|+.|.++++||+.+|+++..+.
T Consensus        12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence            47899999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCCCCeEEEEe----eCCCcEEEEEec-------CCceeecccCCCCceEEEEEeeCCCEEEEEecCCeE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVC----PMRHAAVLVDTD-------GDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV  344 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~----~~~~~i~~~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  344 (622)
                      .+.+|..+.|++++..++++.    +..+.|.++|++       ...+...+..+...++.+.|+|-+++|++|.++|.|
T Consensus        92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i  171 (327)
T KOG0643|consen   92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI  171 (327)
T ss_pred             cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence            999999999999998666654    345678999998       445677788888999999999999999999999999


Q ss_pred             EEEeCCCcc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110         345 LVLSCPALE-LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       345 ~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (622)
                      .+||+++++ .+...+.|...|+.|+++++..++++++.|.+-++||...         .   ..++......++++.++
T Consensus       172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t---------l---~v~Kty~te~PvN~aai  239 (327)
T KOG0643|consen  172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT---------L---EVLKTYTTERPVNTAAI  239 (327)
T ss_pred             EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc---------e---eeEEEeeecccccceec
Confidence            999999974 6667789999999999999999999999999999999983         2   33334446677888999


Q ss_pred             cCCCCeEEEeeCCCC-e------------EEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         424 SGDGEYVCAGSARQH-A------------LYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       424 spdg~~l~~~~~~d~-~------------i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +|-...++.|+..+. .            .++|++-..+.+..++||.+. |++++|||+|+..++++ ||.|++....
T Consensus       240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-INsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-INSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-cceeEECCCCcccccCCCCceEEEEEec
Confidence            998888888775221 1            122222223446778899986 99999999999999999 9999998664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.2e-32  Score=299.20  Aligned_cols=319  Identities=15%  Similarity=0.166  Sum_probs=249.6

Q ss_pred             CeEEEEEcCCCceEEEEe-----ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc
Q psy2110         104 HALYIWEKSVGNLVKILH-----GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  178 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~  178 (622)
                      |.+++|+..+......++     .|.+.|                 ++++|+|++++||+|+.|+.|+||++........
T Consensus       458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V-----------------~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~  520 (793)
T PLN00181        458 GLCKYLSFSKLRVKADLKQGDLLNSSNLV-----------------CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR  520 (793)
T ss_pred             hhhhhhcccceEEEEeeccccccCCCCcE-----------------EEEEECCCCCEEEEEeCCCEEEEEECCccccccc
Confidence            567778776655443333     355555                 6999999999999999999999999764211000


Q ss_pred             cccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeC
Q psy2110         179 ISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISAST  256 (622)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~  256 (622)
                       ..+..   ...+.....+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.
T Consensus       521 -~~~~~---~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        521 -DIHYP---VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             -ccccc---eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence             00000   00011124578899987 478999999999999999999999999999999999999997 7899999999


Q ss_pred             CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-eeecccCCCCceEEEEEeeCCCEE
Q psy2110         257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QIVPIDEDSDLSIVASFDRRGQHV  335 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  335 (622)
                      |+.|++||++++..+..+.....+.++.|++....++++++.++.|++||++... ....+..|...+.++.|. ++.++
T Consensus       597 Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l  675 (793)
T PLN00181        597 DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL  675 (793)
T ss_pred             CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEE
Confidence            9999999999999998888778899999977666689999999999999998764 466777899999999997 78899


Q ss_pred             EEEecCCeEEEEeCCC------ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccC--CCCCCCcce
Q psy2110         336 VTGNSKGKVLVLSCPA------LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAG--KDGDPEPIQ  407 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~  407 (622)
                      ++++.|+.|++||++.      ..++..+.+|...+..++|++++.+|++++.|+.|++|+........  .......+.
T Consensus       676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~  755 (793)
T PLN00181        676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS  755 (793)
T ss_pred             EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence            9999999999999974      35788899999999999999999999999999999999976321000  000000111


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      .+........+.+++|+|++.+|++|+. +|.|+||++
T Consensus       756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~-dG~I~i~~~  792 (793)
T PLN00181        756 GLEVDDASQFISSVCWRGQSSTLVAANS-TGNIKILEM  792 (793)
T ss_pred             ccccCCCCcEEEEEEEcCCCCeEEEecC-CCcEEEEec
Confidence            1111122345789999999999999997 999999986

>KOG1408|consensus

Probab=100.00  E-value=1.2e-32  Score=263.92  Aligned_cols=426  Identities=16%  Similarity=0.203  Sum_probs=301.0

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------------------------------------
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------------------------------------   36 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------------------------------------   36 (622)
                      ..|.+++||.||.|.+|.+. ..|++|.++.....                                             
T Consensus       166 s~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv  244 (1080)
T KOG1408|consen  166 SVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV  244 (1080)
T ss_pred             eeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee
Confidence            56899999999999999764 89999988765311                                             


Q ss_pred             ----------------------cccCceEEeecCCceEEEeechhhhhcCCCC-------------CCccchhhhhhccc
Q psy2110          37 ----------------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG-------------DPEPIQKLQDLVNK   81 (622)
Q Consensus        37 ----------------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~-------------~~~~~~~~~~~~~~   81 (622)
                                            ....++|++|+.+|+|++++..+........             .+.+.........-
T Consensus       245 EFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f  324 (1080)
T KOG1408|consen  245 EFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF  324 (1080)
T ss_pred             eechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence                                  1135788999999999999987643221100             01111111000111


Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE---EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV---KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      -...++.|+|....|..... |..|+|||++.-+.+   ..+-.|...|+..- ..+-.+..    ..-+.-|.+ .++|
T Consensus       325 PD~IA~~Fdet~~klscVYn-dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve-~~p~nv~~----~~~aclp~~-cF~T  397 (1080)
T KOG1408|consen  325 PDAIACQFDETTDKLSCVYN-DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVE-NLPCNVHS----PTAACLPRG-CFTT  397 (1080)
T ss_pred             CceeEEEecCCCceEEEEEc-CceEEEEeccccccccceeeeeeccceeeeec-cccccccC----cccccCCcc-ceeE
Confidence            12246889999888877765 499999999754332   34455666653110 00000000    001111223 4889


Q ss_pred             eeCCCcEEEEecCCcccccccccc----------c----------------CCCcccccccccceEEEEECCCCCEEEEE
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAH----------M----------------HPEFDGALDCISLAVTCAFNKRGTLLAVG  212 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~----------~----------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  212 (622)
                      ++.|++||+|++..+..-..+...          .                ........+.-..+.+++.+|+|++||+|
T Consensus       398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG  477 (1080)
T KOG1408|consen  398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG  477 (1080)
T ss_pred             ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc
Confidence            999999999999763222111100          0                00001112233468999999999999999


Q ss_pred             eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCC-cEEEEEe-CCCCeEEEEEeC
Q psy2110         213 CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR---NGYKIISASTDNNVCIWDVLTG-ECEQKYR-FPSPILKVQFHP  287 (622)
Q Consensus       213 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~  287 (622)
                      ..-|++++|++...+....+..|...|.|+.|+.   ..++|++++.|+.|.|+|+... ..++++. |...|+++.|.-
T Consensus       478 Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  478 DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence            9999999999999888889999999999999986   3578999999999999998654 4455555 789999999987


Q ss_pred             CC-CeEEEEeeCCCcEEEEEecCC--ceee---cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--
Q psy2110         288 RN-DHMFLVCPMRHAAVLVDTDGD--HQIV---PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--  359 (622)
Q Consensus       288 ~~-~~~~~~~~~~~~i~~~d~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  359 (622)
                      .| +.-+++++.|..+.+-..+..  ..+.   +-......++.++..|..+++++++.|..|+||++.+++..+.|+  
T Consensus       558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence            65 456778888877654433311  1111   111234567889999999999999999999999999999999998  


Q ss_pred             -cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         360 -ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       360 -~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                       .|.+....+...|.|.||++.+.|.++.++|..         ..+++..+.+|  ...++.+.|++|-+.|++.+. ||
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~---------sgEcvA~m~GH--sE~VTG~kF~nDCkHlISvsg-Dg  705 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV---------SGECVAQMTGH--SEAVTGVKFLNDCKHLISVSG-DG  705 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEec---------cchhhhhhcCc--chheeeeeecccchhheeecC-Cc
Confidence             456777889999999999999999999999998         44555555543  345678899999999999997 99


Q ss_pred             eEEEEECCC
Q psy2110         439 ALYIWEKSV  447 (622)
Q Consensus       439 ~i~iwd~~~  447 (622)
                      .|+||.+..
T Consensus       706 CIFvW~lp~  714 (1080)
T KOG1408|consen  706 CIFVWKLPL  714 (1080)
T ss_pred             eEEEEECch
Confidence            999998753

>KOG0275|consensus

Probab=100.00  E-value=4.1e-35  Score=255.43  Aligned_cols=286  Identities=23%  Similarity=0.414  Sum_probs=244.2

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      +.|..|||||++|++|+.||.|.+|+..+|+..+.++.....   ..+.....|.|+.|+.|...||+|+.||.|++|.+
T Consensus       216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---ceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            358899999999999999999999999999887776654332   22333457999999999999999999999999999


Q ss_pred             CCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         224 LTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       224 ~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .+|.+++.+. .|...|+++.||.|+..+++++.|.++++.-+.+|++++.++                           
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr---------------------------  345 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR---------------------------  345 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---------------------------
Confidence            9999999987 899999999999999999999999999999888887766655                           


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--CCCCEEEEEEcCC-CCEEEE
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA--STTAIKSIEFARR-GNCLLV  379 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~~  379 (622)
                                     +|...+..+.|+++|.++++++.||+|++|+..+.+++.+++.  ...+|+++-.-|. -..+++
T Consensus       346 ---------------GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  346 ---------------GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             ---------------CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence                           3455566677888889999999999999999999999998884  4456888877764 457888


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      +...++|+|.++..          ..++.+... .....+.+++.||.|.++.+.+. |+.+|-|...+|++.+.+..|.
T Consensus       411 CNrsntv~imn~qG----------QvVrsfsSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE~tl~VhE  479 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQG----------QVVRSFSSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSVLSGKLERTLPVHE  479 (508)
T ss_pred             EcCCCeEEEEeccc----------eEEeeeccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEeecCceeeeeeccc
Confidence            88899999999873          445555433 33456778899999999999997 9999999999999999999998


Q ss_pred             CCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         459 GELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       459 ~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      .. |..++-+|..+.||+-+ ||.+++|.
T Consensus       480 kd-vIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  480 KD-VIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cc-ccccccCcccchhhhhcccchhhhcC
Confidence            77 88999999999999999 99999996

>KOG1063|consensus

Probab=100.00  E-value=2.4e-32  Score=261.53  Aligned_cols=470  Identities=13%  Similarity=0.218  Sum_probs=317.9

Q ss_pred             CCcceEEEEccCCc---EEEeccCCCeEEEEecccccee-------------cccCce-E-EeecCCceEEEeechhhhh
Q psy2110           1 SDLSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELK-------------ASRGNC-L-LVNTGDRLIRVYNHQEVLN   62 (622)
Q Consensus         1 t~~V~~~~fspdg~---~latg~~dg~v~vwd~~~~~~~-------------~~~~~~-l-~~~~~d~~i~~w~~~~~~~   62 (622)
                      +.+|+|+.+-|+.+   ++++|+.||+|++|.++...+.             .....+ . .+.+.++++.+|+.+....
T Consensus        54 ~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~  133 (764)
T KOG1063|consen   54 VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEV  133 (764)
T ss_pred             ccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCce
Confidence            36899999999888   8999999999999998732221             001111 1 1226899999999843220


Q ss_pred             c--------------------------------------CCCCCCccchhhhhhcccccee-EEEEcCCCC---EEEEec
Q psy2110          63 A--------------------------------------GKDGDPEPIQKLQDLVNKTMWK-KCCFSGDGE---YVCAGS  100 (622)
Q Consensus        63 ~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~sp~~~---~l~~~~  100 (622)
                      .                                      ........++....+.+|..+. +++|..-+.   +||+++
T Consensus       134 ~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S  213 (764)
T KOG1063|consen  134 FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS  213 (764)
T ss_pred             eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC
Confidence            0                                      0001123445556667777654 677775443   666677


Q ss_pred             CCCCeEEEEEcCCCceEE----EEe---ccCcceeEEE------EeecCcc-ccccceeEEEEcCCCCEEEEeeCCCcEE
Q psy2110         101 ARQHALYIWEKSVGNLVK----ILH---GTKGELLLDV------VEFDGAL-DCISLAVTCAFNKRGTLLAVGCNDGRIV  166 (622)
Q Consensus       101 ~~~~~i~vwd~~~~~~~~----~~~---~~~~~v~~~~------~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~dg~i~  166 (622)
                      . |..|+||.+.-+....    ...   ..+.++....      ..++.-+ .+-.+|+++.|+|.+..|++++.|+++.
T Consensus       214 Q-D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi  292 (764)
T KOG1063|consen  214 Q-DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI  292 (764)
T ss_pred             C-ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence            5 4999999874322000    000   0001111000      0011111 2223457999999999999999999999


Q ss_pred             EEecCCcccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceEEEeccCCcCeeE
Q psy2110         167 LWDFLTRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPVCS  241 (622)
Q Consensus       167 vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~  241 (622)
                      +|.-.+..-+  .........      .+......+.|+|+++.+++-+..|..++|.....   .....+.+|.+.|+.
T Consensus       293 iW~pd~~tGiWv~~vRlGe~g------g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~d  366 (764)
T KOG1063|consen  293 IWKPDENTGIWVDVVRLGEVG------GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKD  366 (764)
T ss_pred             EEecCCccceEEEEEEeeccc------ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccccee
Confidence            9976654222  111111100      01123578899999999999999999999983322   233456799999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEE----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC------
Q psy2110         242 ISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKY----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD------  310 (622)
Q Consensus       242 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------  310 (622)
                      ++|+|.|.+|++++.|.+-|++-.-..+ .-..+    .|...+.++++-+. +..|++|.....+++|+....      
T Consensus       367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~  445 (764)
T KOG1063|consen  367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLM  445 (764)
T ss_pred             eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHH
Confidence            9999999999999999999998654211 12222    16778899998874 556888888888888764210      


Q ss_pred             --------------------------ce--------------------------------------------eecccCCC
Q psy2110         311 --------------------------HQ--------------------------------------------IVPIDEDS  320 (622)
Q Consensus       311 --------------------------~~--------------------------------------------~~~~~~~~  320 (622)
                                                +.                                            +..+.+|.
T Consensus       446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG  525 (764)
T KOG1063|consen  446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG  525 (764)
T ss_pred             HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence                                      00                                            01123677


Q ss_pred             CceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVL  395 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~  395 (622)
                      ..+++++.+|+|+++++++...     .|++|+..+...+..+..|.-.|+.++|||||++|++.+.|+++.+|...+..
T Consensus       526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~  605 (764)
T KOG1063|consen  526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI  605 (764)
T ss_pred             eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence            7899999999999999987653     58999999999999999999999999999999999999999999999986411


Q ss_pred             ccCCCCCCCcceeeeccccc-eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC--eeEEEE--ecCCCCceeEEEECCC
Q psy2110         396 NAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKIL--HGTKGELLLDVVWHPV  470 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~--~~~~~~--~~~~~~~v~~v~~sp~  470 (622)
                              .....+.....+ .-|-.|.|+|++.++++++. |..|.+|.....  +.+..+  ..+. ..|+.++|.|-
T Consensus       606 --------~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR-DK~VkVW~~~~~~d~~i~~~a~~~~~-~aVTAv~~~~~  675 (764)
T KOG1063|consen  606 --------KDEFRFACLKAHTRIIWDCSWSPDEKYFATASR-DKKVKVWEEPDLRDKYISRFACLKFS-LAVTAVAYLPV  675 (764)
T ss_pred             --------chhhhhccccccceEEEEcccCcccceeEEecC-CceEEEEeccCchhhhhhhhchhccC-CceeeEEeecc
Confidence                    111222223333 34468999999999999997 999999998776  433332  2233 34999999874


Q ss_pred             CC----EEEEEe--CCcEEEeecC
Q psy2110         471 RP----IIASIS--SGVVSLWAQN  488 (622)
Q Consensus       471 ~~----~l~s~~--dg~v~iw~~~  488 (622)
                      -.    .+++.+  .|.|.+|+..
T Consensus       676 ~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  676 DHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccccccceEEEEecccEEEEEecc
Confidence            32    255555  8999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.4e-32  Score=295.53  Aligned_cols=292  Identities=17%  Similarity=0.314  Sum_probs=229.2

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK   81 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (622)
                      ..|.+++|+|+|++||||+.||.|+||+......   .+       .+..                     .....+.++
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~---~~-------~~~~---------------------~~~~~~~~~  532 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK---DG-------RDIH---------------------YPVVELASR  532 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc---cc-------cccc---------------------cceEEeccc
Confidence            5689999999999999999999999999643100   00       0000                     000111223


Q ss_pred             cceeEEEEcCC-CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEe
Q psy2110          82 TMWKKCCFSGD-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVG  159 (622)
Q Consensus        82 ~~~~~~~~sp~-~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~  159 (622)
                      ..+.+++|+|. +.+|++++.+ ++|++||+.+++.+..+.+|.+.|                 ++++|+| ++.+|++|
T Consensus       533 ~~v~~l~~~~~~~~~las~~~D-g~v~lWd~~~~~~~~~~~~H~~~V-----------------~~l~~~p~~~~~L~Sg  594 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFE-GVVQVWDVARSQLVTEMKEHEKRV-----------------WSIDYSSADPTLLASG  594 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCC-CeEEEEECCCCeEEEEecCCCCCE-----------------EEEEEcCCCCCEEEEE
Confidence            45668899874 7889998875 999999999999999999999988                 5999997 78899999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCc-eEEEeccCCc
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMH  237 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  237 (622)
                      +.||+|++||+.++..+..+..+            ..+.++.|+ ++|.+|++|+.||.|++||+.+.+ ....+.+|..
T Consensus       595 s~Dg~v~iWd~~~~~~~~~~~~~------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        595 SDDGSVKLWSINQGVSIGTIKTK------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             cCCCEEEEEECCCCcEEEEEecC------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence            99999999999988776665432            247888994 579999999999999999998765 5677889999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      .|.++.|. ++.+|++++.|++|++||+..+..                ..                    ....+..+.
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~----------------~~--------------------~~~~l~~~~  705 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS----------------GI--------------------NETPLHSFM  705 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc----------------cc--------------------CCcceEEEc
Confidence            99999997 778999999999999999874310                00                    011223344


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-------------ecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-------------KASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      +|...+..++|++++.+|++|+.|+.|++|+.....++..+             ..+...|.+++|+|++..|++++.||
T Consensus       706 gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        706 GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence            56667788899999999999999999999998765544322             23445699999999999999999999


Q ss_pred             cEEEEec
Q psy2110         385 LIRVYNH  391 (622)
Q Consensus       385 ~i~i~d~  391 (622)
                      .|++|++
T Consensus       786 ~I~i~~~  792 (793)
T PLN00181        786 NIKILEM  792 (793)
T ss_pred             cEEEEec
Confidence            9999986

>KOG0278|consensus

Probab=100.00  E-value=8.2e-34  Score=238.60  Aligned_cols=278  Identities=20%  Similarity=0.283  Sum_probs=249.8

Q ss_pred             cceeEEEEc---CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          82 TMWKKCCFS---GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        82 ~~~~~~~~s---p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      .+++.++||   |+|-+|++++.| +.-.+-+-++|.-+.+|.||.+.|                 ++..++.+..+.|+
T Consensus        15 rpvvdl~~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgav-----------------w~~~l~~na~~aas   76 (334)
T KOG0278|consen   15 RPVVDLAFSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAV-----------------WSATLNKNATRAAS   76 (334)
T ss_pred             cceeEEeccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcce-----------------eeeecCchhhhhhh
Confidence            456688888   588899999975 788888889999999999999999                 58889988889999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eEEEeccCCc
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMH  237 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  237 (622)
                      ++.|-+-++||.-+|..+..+....            .|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+
T Consensus        77 aaadftakvw~a~tgdelhsf~hkh------------ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg  144 (334)
T KOG0278|consen   77 AAADFTAKVWDAVTGDELHSFEHKH------------IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG  144 (334)
T ss_pred             hcccchhhhhhhhhhhhhhhhhhhh------------eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence            9999999999999998888876542            48899999999999999999999999998754 5577889999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      .|..+.|....+.|++++.|++||+||.+++..++.+..+.+|.++.++++|+  +++....+.|.+||..+-..+..+.
T Consensus       145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k  222 (334)
T KOG0278|consen  145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYK  222 (334)
T ss_pred             cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC--EEEEecCceeEEeccccccceeecc
Confidence            99999999988999999999999999999999999999999999999999998  5566678889999999877776665


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      . ...|.++..+|+...+++|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++|+.||+|++|...
T Consensus       223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            4 345778899999999999999999999999999999886 8999999999999999999999999999999987

>KOG0316|consensus

Probab=100.00  E-value=2.6e-32  Score=227.60  Aligned_cols=277  Identities=20%  Similarity=0.346  Sum_probs=244.7

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +++++.++.|+-||+|.++++.+ .+|++|+...|.+++++.+|..+|+                 .++.+.|+..+++|
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsd-rtvrLWNp~rg~liktYsghG~EVl-----------------D~~~s~Dnskf~s~   77 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSD-RTVRLWNPLRGALIKTYSGHGHEVL-----------------DAALSSDNSKFASC   77 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCC-ceEEeecccccceeeeecCCCceee-----------------eccccccccccccC
Confidence            45667889999999999999976 8999999999999999999999995                 89999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceEEEeccCCc
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMH  237 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~  237 (622)
                      +.|+.|.+||+++|+..+.+.+|..           .|..++|+.+...+++|+.|..+++||.++.  ++++.+.....
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~a-----------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLA-----------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccc-----------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            9999999999999999999999974           4899999999999999999999999998764  57788888888


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      .|.++..+  +..|++|+.||+++.||++.|+....+ +..+|++++|+++++ ..++++.++.+++.|..+++.+..+.
T Consensus       147 ~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sYk  222 (307)
T KOG0316|consen  147 GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSYK  222 (307)
T ss_pred             ceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHhc
Confidence            99999885  568999999999999999988754432 678999999999998 56778899999999999999999998


Q ss_pred             CCCCceE--EEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         318 EDSDLSI--VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       318 ~~~~~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      +|...-+  ..+++....++++|++||.|++||+.+...+..+..+... |.++.++|.-..|+++... .+..|-
T Consensus       223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY  297 (307)
T ss_pred             ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence            8876654  4566777789999999999999999999999999988887 8999999998888887654 344553

>KOG0281|consensus

Probab=100.00  E-value=5e-34  Score=250.94  Aligned_cols=271  Identities=19%  Similarity=0.337  Sum_probs=235.2

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      ...+++|+.+  |...+++|..| ++|.|||.++..+++.+.||.+.|+                 |+.|.  .+.|++|
T Consensus       196 ~skgVYClQY--DD~kiVSGlrD-nTikiWD~n~~~c~~~L~GHtGSVL-----------------CLqyd--~rviisG  253 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRD-NTIKIWDKNSLECLKILTGHTGSVL-----------------CLQYD--ERVIVSG  253 (499)
T ss_pred             cCCceEEEEe--cchhhhccccc-CceEEeccccHHHHHhhhcCCCcEE-----------------eeecc--ceEEEec
Confidence            3445667776  56678888864 9999999999999999999999995                 88775  5699999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHM  236 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~  236 (622)
                      +.|.+|+|||+++|+++.++-.|..           .|..+.|+.  .++++++.|.++.+||+.+..   +.+.+.+|.
T Consensus       254 SSDsTvrvWDv~tge~l~tlihHce-----------aVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  254 SSDSTVRVWDVNTGEPLNTLIHHCE-----------AVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             CCCceEEEEeccCCchhhHHhhhcc-----------eeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence            9999999999999999999988863           478888875  589999999999999998764   335678999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      ..|+.+.|+  .++|++++.|.+|++|++.++++++++. |...|.++++.   ..++++|+.|.+|++||+..+..+..
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRv  395 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRV  395 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHH
Confidence            999999995  5699999999999999999999999988 77788888775   35899999999999999999999999


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc---------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------LKASFKASTTAIKSIEFARRGNCLLVNTGDRLI  386 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  386 (622)
                      +.+|...+.++.|+  .+.+++|..||+|++||+..+.         ++..+..|.+.|..+.|.  ...+++++.|.+|
T Consensus       396 LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtI  471 (499)
T KOG0281|consen  396 LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTI  471 (499)
T ss_pred             HhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeE
Confidence            99999999999885  6799999999999999997653         345566888999999994  5679999999999


Q ss_pred             EEEecccc
Q psy2110         387 RVYNHQEV  394 (622)
Q Consensus       387 ~i~d~~~~  394 (622)
                      .|||+...
T Consensus       472 LiWdFl~~  479 (499)
T KOG0281|consen  472 LIWDFLNG  479 (499)
T ss_pred             EEEEcCCC
Confidence            99999853

>KOG2048|consensus

Probab=100.00  E-value=1.8e-30  Score=248.41  Aligned_cols=442  Identities=14%  Similarity=0.186  Sum_probs=306.0

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEecccccee----------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK----------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD   66 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~----------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~   66 (622)
                      .|+|+|||.+.+.||.+-.+|.|.+|++...-+.                ...+.+|.+.+.+|.|.-||+.+.      
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l------  100 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL------  100 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC------
Confidence            5899999999999999999999999999775222                335789999999999999999742      


Q ss_pred             CCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE--EEeccCcceeEEEEeecCccccccc
Q psy2110          67 GDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK--ILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        67 ~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                            +....+. ..+.+=+++.+|.+..++.|+.+ |.++..+...++...  .|....+.++               
T Consensus       101 ------k~~~~~d~~gg~IWsiai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~r~l~rq~sRvL---------------  158 (691)
T KOG2048|consen  101 ------KQKYNIDSNGGAIWSIAINPENTILAIGCDD-GVLYDFSIGPDKITYKRSLMRQKSRVL---------------  158 (691)
T ss_pred             ------ceeEEecCCCcceeEEEeCCccceEEeecCC-ceEEEEecCCceEEEEeecccccceEE---------------
Confidence                  2222222 23344589999999999999865 888888877776553  3344556664               


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                        +++|+|++..|++|+.||.|++||...+...............   .....|+++.|-.++ .|++|...|.|.+||.
T Consensus       159 --slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k---~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~  232 (691)
T KOG2048|consen  159 --SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK---REPTIVWSVLFLRDS-TIASGDSAGTVTFWDS  232 (691)
T ss_pred             --EEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc---CCceEEEEEEEeecC-cEEEecCCceEEEEcc
Confidence              9999999999999999999999999998766622221111000   011357888888665 6889999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--E---EEeCCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE--Q---KYRFPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~---~~~~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      ..+..++.+..|.+.|.+++..+++.++++++.|+.|..+...+++..  .   ...|...+.+++..++   .+++++.
T Consensus       233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~  309 (691)
T KOG2048|consen  233 IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGR  309 (691)
T ss_pred             cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecce
Confidence            999999999999999999999999999999999999999988776431  1   1127788999999886   7888999


Q ss_pred             CCcEEEEEecCCceeec----ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc---------cEEEEEecCCCCE
Q psy2110         299 RHAAVLVDTDGDHQIVP----IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL---------ELKASFKASTTAI  365 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i  365 (622)
                      |..+.+-..+.......    ...+..   .+...+.. +++.--....+.+|.+.+.         .+.+........|
T Consensus       310 d~~l~i~~s~~~~~~~h~~~~~~p~~~---~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nI  385 (691)
T KOG2048|consen  310 DFTLAICSSREFKNMDHRQKNLFPASD---RVSVAPEN-RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENI  385 (691)
T ss_pred             eeEEEEccccccCchhhhccccccccc---eeecCccc-eEEEEeccccccceeccCcccccccChhhheeeecCCccce
Confidence            98888766654211111    111111   12222322 3333333445666765443         1222233445678


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeccc-----------cccc------------------------------CCCCCCC
Q psy2110         366 KSIEFARRGNCLLVNTGDRLIRVYNHQE-----------VLNA------------------------------GKDGDPE  404 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~-----------~~~~------------------------------~~~~~~~  404 (622)
                      .+.+.||+|++++.++- ..+++|.+..           ....                              ......+
T Consensus       386 s~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k  464 (691)
T KOG2048|consen  386 SCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK  464 (691)
T ss_pred             eeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh
Confidence            89999999998888762 2334443331           0000                              0000111


Q ss_pred             cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECC-CCCEEEEEe-CCcE
Q psy2110         405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP-VRPIIASIS-SGVV  482 (622)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~-dg~v  482 (622)
                      .+..++.......+..+..||+|+|||+.+. .|.|++|++++++.......-. ..|+.++++| +.+.|+.+. ++++
T Consensus       465 el~~~~~~~~~~~I~~l~~SsdG~yiaa~~t-~g~I~v~nl~~~~~~~l~~rln-~~vTa~~~~~~~~~~lvvats~nQv  542 (691)
T KOG2048|consen  465 ELKSIQSQAKCPSISRLVVSSDGNYIAAIST-RGQIFVYNLETLESHLLKVRLN-IDVTAAAFSPFVRNRLVVATSNNQV  542 (691)
T ss_pred             hhhccccccCCCcceeEEEcCCCCEEEEEec-cceEEEEEcccceeecchhccC-cceeeeeccccccCcEEEEecCCeE
Confidence            1122222223456778999999999999997 8999999999877543332333 3399999995 445666665 9999


Q ss_pred             EEeecC
Q psy2110         483 SLWAQN  488 (622)
Q Consensus       483 ~iw~~~  488 (622)
                      .-++++
T Consensus       543 ~efdi~  548 (691)
T KOG2048|consen  543 FEFDIE  548 (691)
T ss_pred             EEEecc
Confidence            999984

>KOG0283|consensus

Probab=100.00  E-value=2e-32  Score=269.39  Aligned_cols=291  Identities=20%  Similarity=0.321  Sum_probs=218.0

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC---CCC--EEEEEeCCCeE
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK---RGT--LLAVGCNDGRI  218 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~--~l~~~~~dg~i  218 (622)
                      |+++.||+||+|||+||.|+.|+||.+...+....-...... ..-.....+.+..+..++   .++  ..-.+..... 
T Consensus       270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~-~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~-  347 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSC-MYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC-  347 (712)
T ss_pred             EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccch-hhhhhhhccccCccccccccccccccccccccCCcc-
Confidence            379999999999999999999999998763321110000000 000000000000001111   011  1111222222 


Q ss_pred             EEEEcC----CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         219 VLWDFL----TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       219 ~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      .+.+..    ..++++.+.+|.+.|..|.||.++ +|++++.|.+|++|++...+|++.|.|..-|+|++|+|..+.+|+
T Consensus       348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFi  426 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFI  426 (712)
T ss_pred             ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEe
Confidence            222211    245778899999999999999765 899999999999999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--C------CCCEE
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA--S------TTAIK  366 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~~i~  366 (622)
                      +|+-|+.++||++...+.+.-... ...|++++|.|+|++.++|+.+|.+++|++...++...+..  +      ...|+
T Consensus       427 SGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rIT  505 (712)
T KOG0283|consen  427 SGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRIT  505 (712)
T ss_pred             ecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceee
Confidence            999999999999987665554444 48899999999999999999999999999998887665541  1      23799


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         367 SIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       367 ~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      ++.|.|.. ..+++.+.|..|||||.+         +...+.++++..+...-....|+.||++|++++. |..||||+.
T Consensus       506 G~Q~~p~~~~~vLVTSnDSrIRI~d~~---------~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-Ds~VYiW~~  575 (712)
T KOG0283|consen  506 GLQFFPGDPDEVLVTSNDSRIRIYDGR---------DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-DSWVYIWKN  575 (712)
T ss_pred             eeEecCCCCCeEEEecCCCceEEEecc---------chhhhhhhcccccCCcceeeeEccCCCEEEEeec-CceEEEEeC
Confidence            99998754 358888999999999996         4467788888777766677899999999999995 999999998


Q ss_pred             CCC
Q psy2110         446 SVG  448 (622)
Q Consensus       446 ~~~  448 (622)
                      ..-
T Consensus       576 ~~~  578 (712)
T KOG0283|consen  576 DSF  578 (712)
T ss_pred             CCC
Confidence            543

>KOG1407|consensus

Probab=100.00  E-value=6.8e-31  Score=222.66  Aligned_cols=268  Identities=22%  Similarity=0.338  Sum_probs=229.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE--EeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK--IISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      ..+.+++|+.+|..|++|+.|+++.+|+++..+...  ..++|.+.|-.++|+| ....|++++.|.+|++||++.+++.
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence            357899999999999999999999999998765443  3468999999999998 5678999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         272 QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      ..+.....-..+.|+|+|.+ ++++..+..+...|.++.+.....+. ...+..++|+.++.+++..+..|.|.|.....
T Consensus       101 ~~i~~~~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps  178 (313)
T KOG1407|consen  101 ARIETKGENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS  178 (313)
T ss_pred             EEeeccCcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence            99997777778999999985 67778888999999988766655443 33456778888888888888889999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      .+++.++++|.....||.|+|+|++||+|+.|..+.+||+++         .-+++.+..+  .-++..++||.||++||
T Consensus       179 Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---------LiC~R~isRl--dwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  179 LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---------LICERCISRL--DWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             cccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---------hhhheeeccc--cCceEEEEeccCcceee
Confidence            999999999999999999999999999999999999999994         3344444432  34567889999999999


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      +++. |..|-|-++++|..+..++...  +...|+|||...+||.+.
T Consensus       248 SaSE-Dh~IDIA~vetGd~~~eI~~~~--~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  248 SASE-DHFIDIAEVETGDRVWEIPCEG--PTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             ccCc-cceEEeEecccCCeEEEeeccC--CceeEEecCCCceeeEEe
Confidence            9998 9999999999999888776433  388999999999999876

>KOG0288|consensus

Probab=100.00  E-value=6.7e-33  Score=249.59  Aligned_cols=287  Identities=22%  Similarity=0.407  Sum_probs=239.7

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~  193 (622)
                      ....+..|.+.+                 ..+.|-++...|++|+.|..|++|+...++  .+.++.+..          
T Consensus       167 ~~~~ld~h~gev-----------------~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~----------  219 (459)
T KOG0288|consen  167 ALFVLDAHEGEV-----------------HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSL----------  219 (459)
T ss_pred             hhhhhhcccccc-----------------ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccC----------
Confidence            345566777777                 599999998999999999999999987765  444444333          


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                       ..|+.+.|.++++++++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....|.++
T Consensus       220 -g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  220 -GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             -CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence             4589999999999999999999999999999999999999999999999998777799999999999999998887776


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +-..+.+..+..+                                             ...+++|..|++|++||.++..
T Consensus       299 ~l~~S~cnDI~~~---------------------------------------------~~~~~SgH~DkkvRfwD~Rs~~  333 (459)
T KOG0288|consen  299 VLPGSQCNDIVCS---------------------------------------------ISDVISGHFDKKVRFWDIRSAD  333 (459)
T ss_pred             ccccccccceEec---------------------------------------------ceeeeecccccceEEEeccCCc
Confidence            5544333333222                                             2356778889999999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee--eccccceeeeeEEEcCCCCeEE
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL--QDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      +......+. .|+++..++++..|++++.|.++.+.|++..         .....+  .+......++.++|||+++|++
T Consensus       334 ~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---------eI~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  334 KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---------EIRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---------cEEEEeeccccccccccceeEECCCCceee
Confidence            999888874 9999999999999999999999999999842         222222  2334445688999999999999


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEecCCCC-ceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHGTKGE-LLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      +|+. ||.|+||++.++++...+...... .|++++|+|.|..|++++ ++.+.+|.
T Consensus       404 AGS~-dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  404 AGSA-DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eccC-CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9998 999999999999999998765543 599999999999999999 99999994

>KOG1446|consensus

Probab=100.00  E-value=2.7e-30  Score=225.95  Aligned_cols=279  Identities=20%  Similarity=0.330  Sum_probs=226.9

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEE
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLW  221 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw  221 (622)
                      |.++.|+++|.+|++++.|.++++||..+++.+.++..+...           +..+.|....+.++.++.  |.+|+..
T Consensus        17 i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-----------~~~~~Fth~~~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-----------VDLACFTHHSNTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-----------ccEEEEecCCceEEEccCCCCCceEEE
Confidence            369999999999999999999999999999998888766432           566777777777777766  8899999


Q ss_pred             EcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         222 DFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      ++.+.+.++.+.||...|++|+.+|-+..+++++.|++|++||++..++...+....+                      
T Consensus        86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----------------------  143 (311)
T KOG1446|consen   86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----------------------  143 (311)
T ss_pred             EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----------------------
Confidence            9999999999999999999999999889999999999999999998777655542211                      


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc--cEEEEEe---cCCCCEEEEEEcCCCCE
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL--ELKASFK---ASTTAIKSIEFARRGNC  376 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~i~~~~~s~~~~~  376 (622)
                                            ..++|+|.|-++|++.....|++||++..  .+..++.   ......+.|.|||||++
T Consensus       144 ----------------------pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~  201 (311)
T KOG1446|consen  144 ----------------------PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS  201 (311)
T ss_pred             ----------------------cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence                                  13567788888888877778888888754  2444444   33677899999999999


Q ss_pred             EEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee-eeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         377 LLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW-KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       377 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      |+.++..+.+++.|.-         .......+....+...+ ..++|+||+++|++|+. ||+|.+|++++|+.+..+.
T Consensus       202 iLlsT~~s~~~~lDAf---------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~-dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  202 ILLSTNASFIYLLDAF---------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD-DGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             EEEEeCCCcEEEEEcc---------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC-CCcEEEEEcCCCcEeeEec
Confidence            9999999999999987         23355555555444322 46799999999999996 9999999999999999999


Q ss_pred             cCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         456 GTKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       456 ~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      +....++.++.|+|.-.+++++ +..+-+|-+.
T Consensus       272 ~~~~~~~~~~~fnP~~~mf~sa-~s~l~fw~p~  303 (311)
T KOG1446|consen  272 GPNGGPVSCVRFNPRYAMFVSA-SSNLVFWLPD  303 (311)
T ss_pred             CCCCCCccccccCCceeeeeec-CceEEEEecc
Confidence            9765669999999987777766 5667788664

>KOG1407|consensus

Probab=100.00  E-value=1.9e-30  Score=219.93  Aligned_cols=268  Identities=16%  Similarity=0.264  Sum_probs=228.6

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+++|+.+|..|++|+.|+++++|++...+.........+.         +.|-.++|+| ...++++++.|..|++||+
T Consensus        24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~---------~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT---------DSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC---------cchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            69999999999999999999999999887555444332221         3466677776 4568999999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      ..+++...+....+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....++...+..++|+.++. +++.....|.|.
T Consensus        95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~  172 (313)
T KOG1407|consen   95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVE  172 (313)
T ss_pred             ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC-EEEEecCCceEE
Confidence            9999998887654444 57899999999999999999999999999999888888999999995554 677777789999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      +......+++..+..|.....|+.|+|+|+++++|+.|-.+.+||+...-+++.+..+.-+|+.+.|+.+|++||+++.|
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         384 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      ..|-|=++++         ...+..++   ...+...++|+|...+||.++.
T Consensus       253 h~IDIA~vet---------Gd~~~eI~---~~~~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  253 HFIDIAEVET---------GDRVWEIP---CEGPTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             ceEEeEeccc---------CCeEEEee---ccCCceeEEecCCCceeeEEec
Confidence            9988877772         33333332   3344567899999999998875

>KOG0278|consensus

Probab=100.00  E-value=9.1e-32  Score=226.30  Aligned_cols=277  Identities=17%  Similarity=0.237  Sum_probs=245.3

Q ss_pred             ceEEEEECC---CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         196 LAVTCAFNK---RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       196 ~v~~~~~s~---~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      +|..++|||   +|-+|++++.|+.-.+-+-++|..+.++.+|.+.|++.....+..+-++++.|-+-++||.-+|..+.
T Consensus        16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh   95 (334)
T KOG0278|consen   16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH   95 (334)
T ss_pred             ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh
Confidence            478888875   88899999999999998989999999999999999999999998889999999999999999999999


Q ss_pred             EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         273 KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .+.|..-|.+++|+.|.. .+++++.+..+++||++.. .+...+.+|.+.|..+.|....+.|++.+.|++|++||.++
T Consensus        96 sf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen   96 SFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             hhhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence            999999999999999887 5789999999999999764 57788999999999999999999999999999999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      +..++++... .+|+++.++++|++|. ....+.|.+||..         ....++.+..   ...+.+.+++|+...++
T Consensus       175 gt~v~sL~~~-s~VtSlEvs~dG~ilT-ia~gssV~Fwdak---------sf~~lKs~k~---P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  175 GTEVQSLEFN-SPVTSLEVSQDGRILT-IAYGSSVKFWDAK---------SFGLLKSYKM---PCNVESASLHPKKEFFV  240 (334)
T ss_pred             CcEEEEEecC-CCCcceeeccCCCEEE-EecCceeEEeccc---------cccceeeccC---ccccccccccCCCceEE
Confidence            9999988754 7799999999999654 4556789999988         3344444432   33456679999999999


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEE-ecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         432 AGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      +|+. |..++.||..+|+.+..+ ++|.+. |.+|.|+|+|...|+++ ||+|+||....
T Consensus       241 aGge-d~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  241 AGGE-DFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ecCc-ceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCceeeccCCCceEEEEEecC
Confidence            9997 999999999999998886 888886 99999999999999999 99999999863

>KOG0281|consensus

Probab=100.00  E-value=3.1e-32  Score=239.71  Aligned_cols=279  Identities=15%  Similarity=0.252  Sum_probs=230.1

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      |.|+.+.  ...+++|..|++|+|||..+..+...+.+|..           .|.|+.|.  .+.+++|+.|.+|++||+
T Consensus       200 VYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-----------SVLCLqyd--~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  200 VYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-----------SVLCLQYD--ERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             eEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCC-----------cEEeeecc--ceEEEecCCCceEEEEec
Confidence            3577764  56899999999999999999999999999874           47888875  469999999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE----eCCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY----RFPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ++++++.++-+|...|..+.|+  ..++++++.|.++.+||+.+...+...    .|...|..+.|+..   ++++++.|
T Consensus       265 ~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgD  339 (499)
T KOG0281|consen  265 NTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGD  339 (499)
T ss_pred             cCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCC
Confidence            9999999999999999999996  458999999999999999876533222    27788999998754   89999999


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      .++++|++.+.+.+..+.+|...|.|+.|  .|+++++|+.|.+|++||+..|.+++.+++|+.-|.++.|.  .+.+++
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS  415 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS  415 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee
Confidence            99999999999999999999999988876  58899999999999999999999999999999999999995  568999


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV  451 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~  451 (622)
                      |+.||+|++||+............-++..+.  .+...+..+.|  |...|++++. |.+|.|||...+-.-
T Consensus       416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQF--D~fqIvsssH-ddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQF--DEFQIISSSH-DDTILIWDFLNGPPS  482 (499)
T ss_pred             ccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEee--cceEEEeccC-CCeEEEEEcCCCCcc
Confidence            9999999999998543322111111222222  22234455666  6677888887 779999998876543

>KOG0313|consensus

Probab=100.00  E-value=2e-30  Score=231.23  Aligned_cols=272  Identities=17%  Similarity=0.287  Sum_probs=231.9

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC---CCCEEEEeeCC
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK---RGTLLAVGCND  162 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~d  162 (622)
                      ++...  +++|++|++| |.+++||.. |+....+.||.+++.                 +++|.-   ....+++++.|
T Consensus       110 sv~~~--~~~IltgsYD-g~~riWd~~-Gk~~~~~~Ght~~ik-----------------~v~~v~~n~~~~~fvsas~D  168 (423)
T KOG0313|consen  110 SVKGA--SKWILTGSYD-GTSRIWDLK-GKSIKTIVGHTGPIK-----------------SVAWVIKNSSSCLFVSASMD  168 (423)
T ss_pred             hhccc--CceEEEeecC-CeeEEEecC-CceEEEEecCCccee-----------------eeEEEecCCccceEEEecCC
Confidence            44444  7899999996 999999975 999999999999984                 555533   23369999999


Q ss_pred             CcEEEEecCCccccccc----ccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC--------------
Q psy2110         163 GRIVLWDFLTRGIAKII----SAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--------------  224 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~--------------  224 (622)
                      .++++|.++.++.....    .+|.           ..|-+++..++|..+++|+.|..|.+|+..              
T Consensus       169 qtl~Lw~~~~~~~~~~~~~~~~GHk-----------~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  169 QTLRLWKWNVGENKVKALKVCRGHK-----------RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEEEecCchhhhhHHhHhcccc-----------cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence            99999998877543322    2443           358899999999999999999999999932              


Q ss_pred             -----------CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         225 -----------TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       225 -----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                                 ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+..+..+.++.++|... ++
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll  315 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LL  315 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc-ee
Confidence                       1235667889999999999997 6689999999999999999999999999999999999999554 89


Q ss_pred             EEeeCCCcEEEEEecCC---ceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCcc-EEEEEecCCCCEEEE
Q psy2110         294 LVCPMRHAAVLVDTDGD---HQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALE-LKASFKASTTAIKSI  368 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~  368 (622)
                      ++++.+..+++||.+++   -....+.+|...|..+.|+|.. ..|++|+.|+++++||+++.+ ++..+.+|...|.++
T Consensus       316 ~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  316 ASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             eecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            99999999999999865   3557788999999999999976 457889999999999999888 999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .|.. +..+++|+.|.+|+++.-.
T Consensus       396 dW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  396 DWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eccC-CceEEeccCcceEEEeccc
Confidence            9984 5679999999999998654

>KOG0643|consensus

Probab=100.00  E-value=3.5e-30  Score=219.07  Aligned_cols=281  Identities=19%  Similarity=0.246  Sum_probs=238.7

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +..+++-+.|+.+|.+|.+++.| .+..||-..+|+.+.++.||.+.|                 +|+..+-+.+.|++|
T Consensus         9 HERplTqiKyN~eGDLlFscaKD-~~~~vw~s~nGerlGty~GHtGav-----------------W~~Did~~s~~liTG   70 (327)
T KOG0643|consen    9 HERPLTQIKYNREGDLLFSCAKD-STPTVWYSLNGERLGTYDGHTGAV-----------------WCCDIDWDSKHLITG   70 (327)
T ss_pred             CccccceEEecCCCcEEEEecCC-CCceEEEecCCceeeeecCCCceE-----------------EEEEecCCcceeeec
Confidence            44556779999999999999976 899999999999999999999999                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----CCeEEEEEcC-------CCc
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----DGRIVLWDFL-------TRG  227 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iwd~~-------~~~  227 (622)
                      +.|.++++||+.+|+++..+...            ..|..+.|+++|++++....     .+.|.++|++       ..+
T Consensus        71 SAD~t~kLWDv~tGk~la~~k~~------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   71 SADQTAKLWDVETGKQLATWKTN------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             cccceeEEEEcCCCcEEEEeecC------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            99999999999999999888765            35899999999998887754     4679999987       445


Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      +...+..+...++.+-|.|-+.+|++|..||.|.+||+++|+....- + |...|+.++++++.. ++++++.|.+.++|
T Consensus       139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~  217 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLV  217 (327)
T ss_pred             ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceee
Confidence            67788888899999999999999999999999999999998654443 3 888999999999887 78999999999999


Q ss_pred             EecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEE--EeCCC------------ccEEEEEecCCCCEEEEEEc
Q psy2110         306 DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV--LSCPA------------LELKASFKASTTAIKSIEFA  371 (622)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i--~d~~~------------~~~~~~~~~~~~~i~~~~~s  371 (622)
                      |.++-..+.++.. ..++.+++++|...+++.|+.....-+  -+.+.            .+.+..+++|-++|++++|+
T Consensus       218 D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh  296 (327)
T KOG0643|consen  218 DVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH  296 (327)
T ss_pred             eccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence            9999887777665 456788999998888887664332222  12222            23456778999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecc
Q psy2110         372 RRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       372 ~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |+|+..++|+.||.||+.-.+
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccccCCCCceEEEEEec
Confidence            999999999999999998765

>KOG0772|consensus

Probab=99.98  E-value=2e-30  Score=239.90  Aligned_cols=282  Identities=19%  Similarity=0.304  Sum_probs=225.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc----eEEEe-ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKII-SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~----~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      .|.++++.|.|..|++|+.|..|++||+....    ..+.+ .+..+.|++++|++.|..|++.+...+.+|+|-...+.
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence            58899999999999999999999999986432    22233 24556899999999999999999899999999665444


Q ss_pred             EEEEe-------------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ec-----ccCCCCceEEEEEeeC
Q psy2110         271 EQKYR-------------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VP-----IDEDSDLSIVASFDRR  331 (622)
Q Consensus       271 ~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~-----~~~~~~~~~~~~~~~~  331 (622)
                      ....+             |-..+++.+|+|..+..|++++.|+++++|++...+.. ..     ..+..-.++.++|+++
T Consensus       249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD  328 (641)
T ss_pred             eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence            33321             44678899999999999999999999999999764321 11     1233456788999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCccE---EEEEecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc
Q psy2110         332 GQHVVTGNSKGKVLVLSCPALEL---KASFKASTT--AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI  406 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  406 (622)
                      |+.||+|+.||.|.+|+..+...   ...-.+|..  .|+++.||++|++|++-+.|+++++||++.        ..+++
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq--------~kkpL  400 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ--------FKKPL  400 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc--------cccch
Confidence            99999999999999999865432   222336666  899999999999999999999999999995        34566


Q ss_pred             eeeeccccceeeeeEEEcCCCCeEEEeeC-----CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC
Q psy2110         407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSA-----RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG  480 (622)
Q Consensus       407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg  480 (622)
                      ....+..+...-+.|+|||+.++|++|.+     ..+.+++||..+-+.+..+.-.... |..+.|||.-+.|..++ ||
T Consensus       401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS-vv~~~WhpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS-VVRCLWHPKLNQIFAGSGDG  479 (641)
T ss_pred             hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCce-EEEEeecchhhheeeecCCC
Confidence            66666666666678999999999999865     2468999999998888888766655 99999999876555555 99


Q ss_pred             cEEEee
Q psy2110         481 VVSLWA  486 (622)
Q Consensus       481 ~v~iw~  486 (622)
                      +++++-
T Consensus       480 ~~~vyY  485 (641)
T KOG0772|consen  480 TAHVYY  485 (641)
T ss_pred             ceEEEE
Confidence            998863

>KOG0310|consensus

Probab=99.97  E-value=1.1e-29  Score=234.07  Aligned_cols=282  Identities=17%  Similarity=0.258  Sum_probs=239.7

Q ss_pred             hhhccccceeEEEEcCCCCE-EEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          76 QDLVNKTMWKKCCFSGDGEY-VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        76 ~~~~~~~~~~~~~~sp~~~~-l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      .....+..+.+++|||...+ +|+.++  -.+.+|+..+....+.+......+                 .++.|..||+
T Consensus        21 ~~~ke~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v-----------------~s~~fR~DG~   81 (487)
T KOG0310|consen   21 PVHKEHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVV-----------------YSVDFRSDGR   81 (487)
T ss_pred             ccccccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccce-----------------eEEEeecCCe
Confidence            34456677889999997653 444442  579999999888888887777777                 4999999999


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      +||.|...|.|+|+|+.+...+..+..|..           ++..+.|+|+++ .|++|+.|+.+++||+.+......+.
T Consensus        82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----------pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~  150 (487)
T KOG0310|consen   82 LLAAGDESGHVKVFDMKSRVILRQLYAHQA-----------PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS  150 (487)
T ss_pred             EEEccCCcCcEEEeccccHHHHHHHhhccC-----------ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence            999999999999999887777778888774           478889999655 67778888999999999988777899


Q ss_pred             cCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-
Q psy2110         234 AHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTG-ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-  310 (622)
Q Consensus       234 ~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  310 (622)
                      +|++.|.|.+|+| ++..+++|+.||.|++||+++. ..+..+.|..+|..+.+-|.|..++  ......+++||+.++ 
T Consensus       151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia--sAgGn~vkVWDl~~G~  228 (487)
T KOG0310|consen  151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA--SAGGNSVKVWDLTTGG  228 (487)
T ss_pred             CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE--EcCCCeEEEEEecCCc
Confidence            9999999999999 4568899999999999999987 7888899999999999999987433  334567999999855 


Q ss_pred             ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         311 HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      +.+..+..|...|+|+++..++..|++|+-|+.+++||+.+.+.+..+.-. ++|.+++.+|+++.++.|..||.+.+-+
T Consensus       229 qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  229 QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeeeeh
Confidence            455555569999999999999999999999999999999999999888754 8899999999999999999999887663

>KOG0640|consensus

Probab=99.97  E-value=3.3e-30  Score=223.62  Aligned_cols=291  Identities=17%  Similarity=0.252  Sum_probs=237.3

Q ss_pred             hhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC------------------ceEEEEeccCcceeEEEEeec
Q psy2110          74 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG------------------NLVKILHGTKGELLLDVVEFD  135 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~~~~  135 (622)
                      ....-.+...+.+.+|||||.++|+|+.| ..|+|.|++.-                  -.++++..|..+|        
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~dev--------  175 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEV--------  175 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcc--------
Confidence            33334566667788999999999999986 89999998611                  2445566666666        


Q ss_pred             CccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC
Q psy2110         136 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND  215 (622)
Q Consensus       136 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  215 (622)
                               .++.|+|....|++|+.|++|+++|+......+.++.....         ..|.++.|+|.|.+|++|...
T Consensus       176 ---------n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~---------~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  176 ---------NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT---------EPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             ---------cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcc---------ceeeeEeecCCCceEEEecCC
Confidence                     59999999999999999999999999765444333322211         358999999999999999999


Q ss_pred             CeEEEEEcCCCceEEEe---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--C-CCCeEEEEEeCCC
Q psy2110         216 GRIVLWDFLTRGIAKII---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--F-PSPILKVQFHPRN  289 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~  289 (622)
                      ..+++||+++-++...-   ..|.+.|+++.+++.|+..++++.||.|++||--+++|+.++.  | ...|.+..|..++
T Consensus       238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~  317 (430)
T KOG0640|consen  238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG  317 (430)
T ss_pred             CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence            99999999998876443   3689999999999999999999999999999999999999887  3 4678899999988


Q ss_pred             CeEEEEeeCCCcEEEEEecCCceeecccCCC-----CceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEe-cCC
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS-----DLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFK-AST  362 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~~~  362 (622)
                      + ++++++.|..+++|.+.+++.+..+.+..     ..-+...|+....+++.-. ..+.+.-||.++...+..+. +|+
T Consensus       318 k-yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn  396 (430)
T KOG0640|consen  318 K-YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHN  396 (430)
T ss_pred             e-EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCC
Confidence            7 57788899999999999999888776542     2233456777777776644 34679999999987666554 899


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +.++.+.-||.+.-+++++.|..+|+|--+
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeeec
Confidence            999999999999999999999999999654

>KOG1063|consensus

Probab=99.97  E-value=5.5e-29  Score=238.58  Aligned_cols=439  Identities=13%  Similarity=0.197  Sum_probs=300.7

Q ss_pred             CCcceEEEEccCCc---EEEeccCCCeEEEEeccccceecc--cCceEEeecCCceEEEeechhhhhcCCCCCCccchhh
Q psy2110           1 SDLSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKAS--RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL   75 (622)
Q Consensus         1 t~~V~~~~fspdg~---~latg~~dg~v~vwd~~~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~   75 (622)
                      +|+|.+++|...+.   +|||+++|..||||.+........  +...+.+-+. ..+.+-.-.         ..-.+..-
T Consensus       191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~---------i~~~is~e  260 (764)
T KOG1063|consen  191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEE---------IQYRISFE  260 (764)
T ss_pred             chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC-Cceeeeeee---------EEEEEehh
Confidence            58999999997554   899999999999998643221100  0001111111 111110000         00011122


Q ss_pred             hhhccccce-eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEE-------EeccCcceeEEEEeecCccccccceeEE
Q psy2110          76 QDLVNKTMW-KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-------LHGTKGELLLDVVEFDGALDCISLAVTC  147 (622)
Q Consensus        76 ~~~~~~~~~-~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~v~~~  147 (622)
                      ..+.+|..+ +++.|+|.+..|++++.| .++.+|...+..-+..       ..|..+..                 +..
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaD-ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF-----------------~g~  322 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASAD-KSMIIWKPDENTGIWVDVVRLGEVGGSAGGF-----------------WGG  322 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccC-cceEEEecCCccceEEEEEEeecccccccce-----------------eeE
Confidence            334466665 489999999999999986 8999998765432221       11222223                 589


Q ss_pred             EEcCCCCEEEEeeCCCcEEEEecCCc---ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         148 AFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       148 ~~s~d~~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .|+|++..+++-+..|-.++|.....   .....+.+|.           ..|..++|+|.|.+|++.+.|.+-|+|-.-
T Consensus       323 lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~-----------~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  323 LWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV-----------DGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             EEcCCCCEEEEecccCcEEEEeccCccceeecccccccc-----------ccceeeeecCCCCEEEEeccccceeeeccc
Confidence            99999999999999999999983332   2223334444           458999999999999999999999998754


Q ss_pred             CCc----eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------------------
Q psy2110         225 TRG----IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT---------------------------------  267 (622)
Q Consensus       225 ~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~---------------------------------  267 (622)
                      ..+    .+..-+-|...++|++|-+....|++|.....+|+|+...                                 
T Consensus       392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn  471 (764)
T KOG1063|consen  392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN  471 (764)
T ss_pred             ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence            221    2233346888999999998667889998888999998532                                 


Q ss_pred             ----------Cc----------------------------------EEEEEeCCCCeEEEEEeCCCCeEEEEeeC-----
Q psy2110         268 ----------GE----------------------------------CEQKYRFPSPILKVQFHPRNDHMFLVCPM-----  298 (622)
Q Consensus       268 ----------~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----  298 (622)
                                |.                                  ..+.+.|...|++++.+|+++ +++++..     
T Consensus       472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~e  550 (764)
T KOG1063|consen  472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKE  550 (764)
T ss_pred             CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCcc
Confidence                      00                                  011123455689999999988 4555433     


Q ss_pred             CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc----EEEEEecCCCCEEEEEEcCCC
Q psy2110         299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE----LKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~  374 (622)
                      ...|++|+..+-..+..+..|.-.|+.++|||||++|++.+.|.++.+|......    .....+.|..-|.+..|+|++
T Consensus       551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde  630 (764)
T KOG1063|consen  551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE  630 (764)
T ss_pred             ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence            2358999999988888999999999999999999999999999999999875432    123367899999999999999


Q ss_pred             CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC----CCC-eEEEeeCCCCeEEEEECCC--
Q psy2110         375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG----DGE-YVCAGSARQHALYIWEKSV--  447 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----dg~-~l~~~~~~d~~i~iwd~~~--  447 (622)
                      .+|+++|.|.+|++|.....       ....+..+........++.+++.|    +.. .+++|- ..|.|.+|....  
T Consensus       631 ~~FaTaSRDK~VkVW~~~~~-------~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl-e~GeI~l~~~~~~~  702 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEPDL-------RDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL-EKGEIVLWRRKREH  702 (764)
T ss_pred             ceeEEecCCceEEEEeccCc-------hhhhhhhhchhccCCceeeEEeeccccccccceEEEEe-cccEEEEEeccccc
Confidence            99999999999999998741       113333333344455666677665    233 455555 499999999651  


Q ss_pred             -----Cee-----EEEEecCCCCceeEEEECCCC--------C--EEEEEe-CCcEEEeecC
Q psy2110         448 -----GNL-----VKILHGTKGELLLDVVWHPVR--------P--IIASIS-SGVVSLWAQN  488 (622)
Q Consensus       448 -----~~~-----~~~~~~~~~~~v~~v~~sp~~--------~--~l~s~~-dg~v~iw~~~  488 (622)
                           +..     +....+|... |+.+.|.|..        .  .|++|+ |..+++++++
T Consensus       703 ~~~~~~~~~~~~~l~~~~~~~~a-V~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  703 RQVTVGTFNLDTRLCATIGPDSA-VNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccccceeeeeccccccccChHHh-hheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence                 110     0111234444 9999999862        2  468888 9999999864

>KOG0305|consensus

Probab=99.97  E-value=1.5e-29  Score=242.96  Aligned_cols=274  Identities=19%  Similarity=0.402  Sum_probs=239.4

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcE
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI  165 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  165 (622)
                      -+.|| ..+.||++..  ..|++|+..++........+...+                 +++.|+++|.+|++|..+|.|
T Consensus       182 lldWs-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~v-----------------tSv~ws~~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELV-----------------TSVKWSPDGSHLAVGTSDGTV  241 (484)
T ss_pred             Hhhcc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCce-----------------EEEEECCCCCEEEEeecCCeE
Confidence            46788 4567777763  589999999999877777666666                 699999999999999999999


Q ss_pred             EEEecCCccccccccc-ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE-eccCCcCeeEEE
Q psy2110         166 VLWDFLTRGIAKIISA-HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPVCSIS  243 (622)
Q Consensus       166 ~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~  243 (622)
                      .|||..+.+....+.. |.           ..|.+++|+  +..+.+|+.++.|..+|++..+.... +.+|...|+.++
T Consensus       242 ~iwD~~~~k~~~~~~~~h~-----------~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  242 QIWDVKEQKKTRTLRGSHA-----------SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             EEEehhhccccccccCCcC-----------ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence            9999999888888877 43           458899998  67899999999999999998765544 889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCceeecccCCC
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDHQIVPIDEDS  320 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~  320 (622)
                      |++|+++||+|+.|+.+.|||....++...+. |.+.|.+++|+|-...+|++|+  .|+.|++||..++..+..... .
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-g  387 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-G  387 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-C
Confidence            99999999999999999999997777766665 9999999999999888999864  688999999998887776655 5


Q ss_pred             CceEEEEEeeCCCEEEE--EecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         321 DLSIVASFDRRGQHVVT--GNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..|..+.|++..+-|++  |..++.|.||+..+.+.+..+.+|...|..++++|||..+++++.|.++++|++-.
T Consensus       388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            66889999999877776  45677899999999999999999999999999999999999999999999999873

>KOG0308|consensus

Probab=99.97  E-value=4.5e-30  Score=244.22  Aligned_cols=330  Identities=16%  Similarity=0.223  Sum_probs=249.8

Q ss_pred             hhhhhcccccee-EEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEE-
Q psy2110          74 KLQDLVNKTMWK-KCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF-  149 (622)
Q Consensus        74 ~~~~~~~~~~~~-~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~-  149 (622)
                      .+..+.+|..|+ .++...+++.|++++.| -+|++|+...+  -++.+++.|.+.|                 .|++. 
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsD-tTVK~W~~~~~~~~c~stir~H~DYV-----------------kcla~~  126 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSD-TTVKVWNAHKDNTFCMSTIRTHKDYV-----------------KCLAYI  126 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCC-ceEEEeecccCcchhHhhhhcccchh-----------------eeeeec
Confidence            355566666655 67788899999999986 89999999877  6888899999988                 59998 


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                      .++..++|+||.|+.|.+||++++.  ....+..-...  .....+...|++++.++.|..+++|+..+.+++||..+++
T Consensus       127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~--sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~  204 (735)
T KOG0308|consen  127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN--SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK  204 (735)
T ss_pred             ccCceeEEecCCCccEEEEEccCcchhhhhhccccccc--cCCCCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence            8888899999999999999999873  33332221111  1111344678999999999999999999999999999999


Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                      .+..+++|...|..+..++||+.+++++.||+|++||+...+|+.++. |...|.++..+|+-. .+++|+.++.|..-|
T Consensus       205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTD  283 (735)
T ss_pred             ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecc
Confidence            999999999999999999999999999999999999999999999988 788899999998665 588999999999999


Q ss_pred             ecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy2110         307 TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI  386 (622)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  386 (622)
                      +++......+-.....+..+..+...+-+-+++.|+.|+-|-.+-               .+.+++.+.+.. -+.|...
T Consensus       284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~---------------~~~l~~s~~~~~-~~T~~~~  347 (735)
T KOG0308|consen  284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP---------------DIALSVSGDLDF-FSTDSNN  347 (735)
T ss_pred             cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc---------------ccccccCCCCCc-ccccCCC
Confidence            998655444444555566666665455556777888888886542               124555555444 3334333


Q ss_pred             EEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         387 RVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      .+.+...          .+...   ..+..++...+.-.|.+++++-.. .|.+.+||+-.+..+..+
T Consensus       348 ~~~~~~~----------tp~~v---i~Gg~ai~k~~mL~dkRhVlTkDa-~gnv~lwDIl~~~~~~d~  401 (735)
T KOG0308|consen  348 HSCDLTN----------TPDSV---IPGGAAIKKHAMLNDKRHVLTKDA-KGNVALWDILACVKVEDF  401 (735)
T ss_pred             ccccccC----------CCcee---ccCchhhhhhhhhcCcceEeeecC-CCCEEEEEeeeeeehhhc
Confidence            4443321          11111   123344555677779999999987 899999998766655444

>KOG0283|consensus

Probab=99.97  E-value=6.6e-30  Score=251.70  Aligned_cols=208  Identities=17%  Similarity=0.290  Sum_probs=178.1

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      .+++..+.||.+.|+                 .+.||.++ +|++++.|++||+|++....++..|...           
T Consensus       359 ekP~~ef~GHt~DIL-----------------DlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn-----------  409 (712)
T KOG0283|consen  359 EKPFCEFKGHTADIL-----------------DLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN-----------  409 (712)
T ss_pred             ccchhhhhccchhhe-----------------ecccccCC-eeEeccccccEEeecCCCcceeeEEecC-----------
Confidence            568889999999996                 99999765 8999999999999999999999888654           


Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         194 ISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       194 ~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                       ..|+|++|+| |.+++++|+-||.++||++...+...-...+ .-|++++|.|||+..+.|+.+|.+++|++...+...
T Consensus       410 -dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  410 -DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             -CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence             4799999999 6789999999999999999887766554444 889999999999999999999999999999887766


Q ss_pred             EEe---C------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC--ceEEEEEeeCCCEEEEEecC
Q psy2110         273 KYR---F------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD--LSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       273 ~~~---~------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d  341 (622)
                      .+.   +      ...|++++|.|....-+++.+.|..|+|+|.+....+..+.+...  .-..+.|+.||++|+++++|
T Consensus       488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD  567 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED  567 (712)
T ss_pred             eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence            553   1      237999999998777788889999999999988877777765433  33567899999999999999


Q ss_pred             CeEEEEeCCCc
Q psy2110         342 GKVLVLSCPAL  352 (622)
Q Consensus       342 g~i~i~d~~~~  352 (622)
                      ..|++|+....
T Consensus       568 s~VYiW~~~~~  578 (712)
T KOG0283|consen  568 SWVYIWKNDSF  578 (712)
T ss_pred             ceEEEEeCCCC
Confidence            99999998543

>KOG2096|consensus

Probab=99.97  E-value=5.9e-29  Score=216.75  Aligned_cols=295  Identities=18%  Similarity=0.250  Sum_probs=212.6

Q ss_pred             EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc--cccccCCCccccccccc
Q psy2110         118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI--ISAHMHPEFDGALDCIS  195 (622)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~  195 (622)
                      ..+++|.+.|                 ++++|+.||++|||++.|++|++|++........  +......         .
T Consensus        80 ~~LKgH~~~v-----------------t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---------d  133 (420)
T KOG2096|consen   80 SVLKGHKKEV-----------------TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---------D  133 (420)
T ss_pred             hhhhccCCce-----------------eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---------C
Confidence            4578999988                 6999999999999999999999999987422211  1111110         2


Q ss_pred             ceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCc---eE---------EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRG---IA---------KIISAHMHPVCSISWSRNGYKIISASTDNNVCI  262 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~---~~---------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i  262 (622)
                      ..+.++|+||-+-+++.. ....+++|.+...+   ..         ..-+.|.-.+..+-...++.+|++++.|..|.+
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence            357899999988666554 45679999875322   11         111245667777777788899999999999999


Q ss_pred             EECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC
Q psy2110         263 WDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       263 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  341 (622)
                      |+++ |+.++.+.. ...-+..                                           +.||+|+++++++-.
T Consensus       214 w~lk-Gq~L~~idtnq~~n~~a-------------------------------------------avSP~GRFia~~gFT  249 (420)
T KOG2096|consen  214 WDLK-GQLLQSIDTNQSSNYDA-------------------------------------------AVSPDGRFIAVSGFT  249 (420)
T ss_pred             EecC-Cceeeeeccccccccce-------------------------------------------eeCCCCcEEEEecCC
Confidence            9998 887777652 2223333                                           445555555555554


Q ss_pred             CeEEEEeCC--------CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110         342 GKVLVLSCP--------ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV  413 (622)
Q Consensus       342 g~i~i~d~~--------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  413 (622)
                      --|++|.+-        .-..+.++.+|...|..++|+++...+++.+.||++++||.+-....+.  .+..++....+.
T Consensus       250 pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q--Dpk~Lk~g~~pl  327 (420)
T KOG2096|consen  250 PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ--DPKILKEGSAPL  327 (420)
T ss_pred             CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC--CchHhhcCCcch
Confidence            455566531        1234567889999999999999999999999999999999885433322  334444432221


Q ss_pred             --cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110         414 --NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWA  486 (622)
Q Consensus       414 --~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~  486 (622)
                        ....-..+.+||.|+.||.+.  ...+++|..++|+....+..-++..|.+++|+++|+++++++|..+++..
T Consensus       328 ~aag~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  328 HAAGSEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             hhcCCCceEEEeCCCCcEEEeec--CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence              122234789999999999887  45799999999988877765444459999999999999999999999987

>KOG0305|consensus

Probab=99.97  E-value=3.9e-29  Score=240.19  Aligned_cols=272  Identities=17%  Similarity=0.278  Sum_probs=234.9

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--C
Q psy2110         199 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--F  276 (622)
Q Consensus       199 ~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~  276 (622)
                      -+.|+. .+.|++|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.  |
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h  259 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH  259 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence            357774 45677765 5689999999988766666668999999999999999999999999999999888887776  5


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec-ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP-IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      ...|.+++|.   ...+.+|+.++.|..+|++....... +..|...|..+.|++++.++++|+.|+.+.|||....+++
T Consensus       260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            7899999998   34789999999999999998766655 8889999999999999999999999999999999888999


Q ss_pred             EEEecCCCCEEEEEEcCC-CCEEEEEe--CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         356 ASFKASTTAIKSIEFARR-GNCLLVNT--GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       356 ~~~~~~~~~i~~~~~s~~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ..+..|...|..++|+|- ...||+|+  .|+.|++||...         .   ..+........|+++.|++..+-|++
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~---------g---~~i~~vdtgsQVcsL~Wsk~~kEi~s  404 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT---------G---ARIDSVDTGSQVCSLIWSKKYKELLS  404 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC---------C---cEecccccCCceeeEEEcCCCCEEEE
Confidence            999999999999999995 45788864  599999999983         2   33444456678889999998866655


Q ss_pred             e-eCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         433 G-SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       433 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      + +..++.|.||+..+.+.+..+.+|... |..++|+|+|..+++++ |.++++|++-
T Consensus       405 thG~s~n~i~lw~~ps~~~~~~l~gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  405 THGYSENQITLWKYPSMKLVAELLGHTSR-VLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             ecCCCCCcEEEEeccccceeeeecCCcce-eEEEEECCCCCEEEEecccCcEEecccc
Confidence            4 444778999999999999999999987 99999999999999999 9999999983

>KOG0310|consensus

Probab=99.97  E-value=2.8e-29  Score=231.44  Aligned_cols=277  Identities=20%  Similarity=0.248  Sum_probs=228.8

Q ss_pred             ceeEEEEcCCCCE-EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         143 LAVTCAFNKRGTL-LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       143 ~v~~~~~s~d~~~-l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                      .|.+++|+|...+ +|+.+. -.+.||+..+....+.+....           ..+.++.|-.||++|++|...|.|++|
T Consensus        28 ~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk-----------~~v~s~~fR~DG~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFK-----------DVVYSVDFRSDGRLLAAGDESGHVKVF   95 (487)
T ss_pred             cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhc-----------cceeEEEeecCCeEEEccCCcCcEEEe
Confidence            4579999996542 443332 579999988876666554433           248999999999999999999999999


Q ss_pred             EcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         222 DFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      |+.+...++.+.+|+.++..+.|+| ++..|++|+.|+.+++||+.+......+. |...|.+.+|+|..++++++|+.|
T Consensus        96 D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD  175 (487)
T KOG0310|consen   96 DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD  175 (487)
T ss_pred             ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence            9888888899999999999999999 55677888888999999999988644444 889999999999999999999999


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      |.|++||++.......-..|..+|..+.+-|.|..+++++.. .+++||+.+ ++.+..+..|...|+|+++..++..|+
T Consensus       176 g~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  176 GKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             ceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence            999999999875444445678899999999999999998765 699999985 455666666999999999999999999


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      +++-|+.|++||+.+            .+.........++.+++.+|+++.++.|-. +|.+.+-..
T Consensus       255 S~sLD~~VKVfd~t~------------~Kvv~s~~~~~pvLsiavs~dd~t~viGms-nGlv~~rr~  308 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTN------------YKVVHSWKYPGPVLSIAVSPDDQTVVIGMS-NGLVSIRRR  308 (487)
T ss_pred             ecccccceEEEEccc------------eEEEEeeecccceeeEEecCCCceEEEecc-cceeeeehh
Confidence            999999999999762            223333345567889999999999999987 887766643

>KOG0640|consensus

Probab=99.97  E-value=9.6e-30  Score=220.78  Aligned_cols=282  Identities=19%  Similarity=0.331  Sum_probs=235.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCC------------C------ceEEEeccCCcCeeEEEEcCCCCEEEEEeC
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT------------R------GIAKIISAHMHPVCSISWSRNGYKIISAST  256 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  256 (622)
                      +.+.+.+|++||.++++|+.|..|+|.|++.            +      -.++++..|...|+++.|+|....|++++.
T Consensus       113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr  192 (430)
T KOG0640|consen  113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR  192 (430)
T ss_pred             cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence            3578899999999999999999999999861            1      246788899999999999999999999999


Q ss_pred             CCcEEEEECCCCcEE---EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec---ccCCCCceEEEEEee
Q psy2110         257 DNNVCIWDVLTGECE---QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP---IDEDSDLSIVASFDR  330 (622)
Q Consensus       257 d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~  330 (622)
                      |++|+++|+......   +.+....+|.++.|+|.|. ++++|.....+++||+.+-++...   -..|...|+++.|++
T Consensus       193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence            999999999765433   3444567899999999998 577788888999999998776544   346788999999999


Q ss_pred             CCCEEEEEecCCeEEEEeCCCccEEEEEe-cC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALELKASFK-AS-TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      .|++.++|+.||.|++||--+++++.++. .| ...|.+..|..+|+++++.+.|..+++|.+.         ..+++..
T Consensus       272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~---------t~R~l~~  342 (430)
T KOG0640|consen  272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS---------TGRMLKE  342 (430)
T ss_pred             CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec---------CCceEEE
Confidence            99999999999999999998899998886 44 3569999999999999999999999999998         4455555


Q ss_pred             eeccccc---eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cCCCCceeEEEECCCCCEEEEEe-CCcEE
Q psy2110         409 LQDLVNK---TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVWHPVRPIIASIS-SGVVS  483 (622)
Q Consensus       409 ~~~~~~~---~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~-dg~v~  483 (622)
                      +.+.-..   ...+...|.....|++.-....+.+.-||.+++..+..+. ||.+. ++.+.-||.++-+.+|+ |...+
T Consensus       343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-~R~i~HSP~~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-VRWIVHSPVEPAFMTCSDDFRAR  421 (430)
T ss_pred             EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-ceEEEeCCCCCceeeecccceee
Confidence            5543111   1123457888889998887767889999999988777765 56654 99999999999999999 89999


Q ss_pred             Eeec
Q psy2110         484 LWAQ  487 (622)
Q Consensus       484 iw~~  487 (622)
                      +|--
T Consensus       422 FWyr  425 (430)
T KOG0640|consen  422 FWYR  425 (430)
T ss_pred             eeee
Confidence            9964

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.7e-28  Score=242.54  Aligned_cols=267  Identities=14%  Similarity=0.153  Sum_probs=210.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE-------------EEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-------------KIISAHMHPVCSISWSR-NGYKIISASTDNNVC  261 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~  261 (622)
                      .|.....++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            3555566677666666666666666664333221             24678999999999999 889999999999999


Q ss_pred             EEECCCCc-------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCC
Q psy2110         262 IWDVLTGE-------CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       262 iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                      +||+.++.       ++..+. |...|.+++|+|++..++++++.|+.|++||+.+......+..|...+.+++|+|+|.
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~  181 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS  181 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence            99997653       344444 7889999999999877899999999999999999888888889999999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCCCCEEEEEe----CCCcEEEEecccccccCCCCCCCccee
Q psy2110         334 HVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARRGNCLLVNT----GDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       334 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      +|++++.|+.|++||+++++.+..+..|.+. +..+.|.+++..+++++    .|+.|++||++..        ..++..
T Consensus       182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~--------~~p~~~  253 (493)
T PTZ00421        182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM--------ASPYST  253 (493)
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC--------CCceeE
Confidence            9999999999999999999999999988765 45678999888887754    4789999999841        112222


Q ss_pred             eeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110         409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       409 ~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                      .. ......+....|++++++|++++..|+.|++||+.+++++..+......++..++|.|..
T Consensus       254 ~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        254 VD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             ec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            21 112223345689999999998875589999999999998877766555558889999864

>KOG0772|consensus

Probab=99.97  E-value=2e-29  Score=233.39  Aligned_cols=303  Identities=20%  Similarity=0.331  Sum_probs=216.2

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN   80 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~   80 (622)
                      |..|+++++.|.|.+++||+.|.+|++||.+.+.               .+.+-+                 +.++. ..
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---------------as~~~f-----------------r~l~P-~E  213 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD---------------ASMRSF-----------------RQLQP-CE  213 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccceEEEEeccccc---------------ccchhh-----------------hccCc-cc
Confidence            5679999999999999999999999999975432               222111                 11111 12


Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEe
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVG  159 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~  159 (622)
                      ...+.+++||+.|..|++.+.. ...+|+|-...+.+...+|...-+  .+....||+   ..++|.+|+|+.+ .++|+
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~-aqakl~DRdG~~~~e~~KGDQYI~--Dm~nTKGHi---a~lt~g~whP~~k~~FlT~  287 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGS-AQAKLLDRDGFEIVEFSKGDQYIR--DMYNTKGHI---AELTCGCWHPDNKEEFLTC  287 (641)
T ss_pred             ccccceeeecCCCCeEEEEecC-cceeEEccCCceeeeeeccchhhh--hhhccCCce---eeeeccccccCcccceEEe
Confidence            2235679999999988877654 689999976555555444432211  222222322   2347999999875 78999


Q ss_pred             eCCCcEEEEecCCccc-ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccC
Q psy2110         160 CNDGRIVLWDFLTRGI-AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAH  235 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~  235 (622)
                      +.||++|||+++..+. .+.+......      ..--.++.|+|+++|++||+|+.||.|.+|+..+..   ....-..|
T Consensus       288 s~DgtlRiWdv~~~k~q~qVik~k~~~------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  288 SYDGTLRIWDVNNTKSQLQVIKTKPAG------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             cCCCcEEEEecCCchhheeEEeeccCC------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence            9999999999987543 2233221111      001257899999999999999999999999975432   22334567


Q ss_pred             Cc--CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         236 MH--PVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       236 ~~--~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      ..  .|+|+.||+||++|++-+.|+++++||++..+ ++....   ...+-+.                           
T Consensus       362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td---------------------------  414 (641)
T KOG0772|consen  362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD---------------------------  414 (641)
T ss_pred             CCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc---------------------------
Confidence            76  89999999999999999999999999998643 332221   1122333                           


Q ss_pred             CceeecccCCCCceEEEEEeeCCCEEEEEe------cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         310 DHQIVPIDEDSDLSIVASFDRRGQHVVTGN------SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                                      ++|||+.++|++|+      ..|.+.+||..+.+.+..+......|..+.|+|.-+.|++++.|
T Consensus       415 ----------------c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd  478 (641)
T KOG0772|consen  415 ----------------CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD  478 (641)
T ss_pred             ----------------cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence                            44555555555543      45789999999999999998888999999999999999999999


Q ss_pred             CcEEEEec
Q psy2110         384 RLIRVYNH  391 (622)
Q Consensus       384 ~~i~i~d~  391 (622)
                      |.+++|--
T Consensus       479 G~~~vyYd  486 (641)
T KOG0772|consen  479 GTAHVYYD  486 (641)
T ss_pred             CceEEEEC
Confidence            99998743

>KOG0313|consensus

Probab=99.97  E-value=9.3e-29  Score=220.68  Aligned_cols=283  Identities=15%  Similarity=0.241  Sum_probs=229.9

Q ss_pred             cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCC---CEEEEEeCCCcEEEEEC
Q psy2110         189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNG---YKIISASTDNNVCIWDV  265 (622)
Q Consensus       189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~  265 (622)
                      ..+....+|.++...  ++.+++|+.||.+++||. .|+...++.+|.++|.+++|.-..   ..|++++.|.++++|-+
T Consensus       100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             ccccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            344444677777766  689999999999999995 788899999999999988885432   36999999999999999


Q ss_pred             CCCcEEEE-----EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-------------------------Cceeec
Q psy2110         266 LTGECEQK-----YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-------------------------DHQIVP  315 (622)
Q Consensus       266 ~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------~~~~~~  315 (622)
                      +.++....     -.|...|.++...+++. .+++++.|..+.+|+...                         ..++..
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            87754321     14889999999999887 689999999999999321                         124556


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVL  395 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~  395 (622)
                      +.+|...|..+.|++ ...+++++.|.+|+.||+.++..+.++... ..++++.++|..++|++|+.|..|++||.+.. 
T Consensus       256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-  332 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-  332 (423)
T ss_pred             ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCC-
Confidence            778999999999988 678999999999999999999998887765 77899999999999999999999999999841 


Q ss_pred             ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe-eEEEEecCCCCceeEEEECCCCCEE
Q psy2110         396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-LVKILHGTKGELLLDVVWHPVRPII  474 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l  474 (622)
                           +.....+.+.+|.+  -+.++.|+|...++++.++.|+++++||+++.+ ++..+.+|.+. |.++.|. ++..|
T Consensus       333 -----~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~-~~~~I  403 (423)
T KOG0313|consen  333 -----DGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWN-EGGLI  403 (423)
T ss_pred             -----CCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEecc-CCceE
Confidence                 11223334444333  556889999877665444449999999999877 89999999887 9999998 45688


Q ss_pred             EEEe-CCcEEEeec
Q psy2110         475 ASIS-SGVVSLWAQ  487 (622)
Q Consensus       475 ~s~~-dg~v~iw~~  487 (622)
                      ++|+ |.+++|+.-
T Consensus       404 vSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  404 VSGGADNKLRIFKG  417 (423)
T ss_pred             EeccCcceEEEecc
Confidence            9999 999999865

>KOG0277|consensus

Probab=99.97  E-value=5.9e-29  Score=210.11  Aligned_cols=279  Identities=15%  Similarity=0.159  Sum_probs=225.5

Q ss_pred             eEEEEcCC--CCEEEEec-----CCCCeEEEEEcCCCceEEEEec--cCcceeEEEEeecCccccccceeEEEEcCCC-C
Q psy2110          85 KKCCFSGD--GEYVCAGS-----ARQHALYIWEKSVGNLVKILHG--TKGELLLDVVEFDGALDCISLAVTCAFNKRG-T  154 (622)
Q Consensus        85 ~~~~~sp~--~~~l~~~~-----~~~~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~  154 (622)
                      .++.|||-  ++..++.+     ...|.+.|.++..++-+..+..  -.+.+                 ..++|+++. +
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L-----------------fdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL-----------------FDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce-----------------eEeeecCCCcc
Confidence            36889984  33322221     1138899999875554444332  22233                 499999975 4


Q ss_pred             EEEEeeCCCcEEEEecCC-cccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         155 LLAVGCNDGRIVLWDFLT-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      .+++++.||++++||+.. ...+..++.|..           .|.++.|++- +..+++++.|++|++|+...++.++++
T Consensus        75 ~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----------EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf  143 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----------EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF  143 (311)
T ss_pred             eEEEEecCceEEEeccCCCCcchhHHHhhhh-----------heEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence            888999999999999643 246667777764           4899999985 456788899999999999999999999


Q ss_pred             ccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         233 SAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       233 ~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      .+|...|...+|+| .++.+++++.|+++++||++.......+. |...+.++.|+.-+..++++++.|+.|+.||+++-
T Consensus       144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            99999999999999 67899999999999999998654333355 77899999999999999999999999999999874


Q ss_pred             -ceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCc-cEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcE
Q psy2110         311 -HQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPAL-ELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLI  386 (622)
Q Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i  386 (622)
                       .++..+.+|.-.|..+.|||.. ..|++++.|-+++|||.... .++.+...|..-+..+.|++ +..++|+++.|..+
T Consensus       224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  224 RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence             5678889999999999999965 67889999999999998744 46677788999999999987 45689999999999


Q ss_pred             EEEec
Q psy2110         387 RVYNH  391 (622)
Q Consensus       387 ~i~d~  391 (622)
                      +||+.
T Consensus       304 ~Vw~p  308 (311)
T KOG0277|consen  304 YVWNP  308 (311)
T ss_pred             eeecc
Confidence            99984

>KOG2106|consensus

Probab=99.97  E-value=4e-27  Score=217.66  Aligned_cols=438  Identities=15%  Similarity=0.202  Sum_probs=318.8

Q ss_pred             cceEEEEcc--CCcEEEec--cCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhc
Q psy2110           3 LSIVASFDR--RGQHVVTG--NSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNA   63 (622)
Q Consensus         3 ~V~~~~fsp--dg~~latg--~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~   63 (622)
                      .|.|++||+  .|.+|+.-  +.+..+.|||.+.+...               -+.+..+++..+.+.+.+|+.+.....
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~  235 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV  235 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE
Confidence            489999998  45666554  45677899998765332               234566777778899999988654321


Q ss_pred             CCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          64 GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                      .       .+-+........+.|++|.++|+.+ +|.++ |.|.||+..+.+..+....|.+.|+               
T Consensus       236 k-------~~~~fek~ekk~Vl~v~F~engdvi-TgDS~-G~i~Iw~~~~~~~~k~~~aH~ggv~---------------  291 (626)
T KOG2106|consen  236 K-------RQGIFEKREKKFVLCVTFLENGDVI-TGDSG-GNILIWSKGTNRISKQVHAHDGGVF---------------  291 (626)
T ss_pred             E-------EeeccccccceEEEEEEEcCCCCEE-eecCC-ceEEEEeCCCceEEeEeeecCCceE---------------
Confidence            1       1112222233567899999999866 66554 9999999998888888889999995               


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                        ++..-.+|.+| +|+.|..|..|| ..-+.++....+.   ..      ..|..++=...+  |++|...+.|..=.+
T Consensus       292 --~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe---~~------G~iRtv~e~~~d--i~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  292 --SLCMLRDGTLL-SGGKDRKIILWD-DNYRKLRETELPE---QF------GPIRTVAEGKGD--ILVGTTRNFILQGTL  356 (626)
T ss_pred             --EEEEecCccEe-ecCccceEEecc-ccccccccccCch---hc------CCeeEEecCCCc--EEEeeccceEEEeee
Confidence              88888888655 599999999999 2222222222221   11      235555433322  778877777776666


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      +++-. ....+|......++.+|+...+++++.|+.+++|+  ..+.........++.++.|+|.|  .+++|...|...
T Consensus       357 ~~~f~-~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~  431 (626)
T KOG2106|consen  357 ENGFT-LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWF  431 (626)
T ss_pred             cCCce-EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEE
Confidence            65543 34557889999999999999999999999999999  66777777788999999999999  788999999999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-ccEEEEEe-cCCCCEEEEEEcCCCCEEEEEe
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-LELKASFK-ASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +.|..+...+ .+......+.++.|+|+|.++|.|+.|+.|++|-+.. +....... .+..+|+.+.||+|+++|.+.+
T Consensus       432 V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  432 VLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             EEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence            9999984444 4444488999999999999999999999999998764 44433333 3448999999999999999999


Q ss_pred             CCCcEEEEecccccccCCCCC-----CCcceeee--ccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC---eeE
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGD-----PEPIQKLQ--DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG---NLV  451 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~---~~~  451 (622)
                      .|-.|..|............+     ..+..-+.  +......+..++-+.+.+.+|+|.. .|.|++|...-.   ...
T Consensus       511 ~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd-~g~v~lf~yPc~s~rA~~  589 (626)
T KOG2106|consen  511 GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD-FGKVHLFSYPCSSPRAPS  589 (626)
T ss_pred             CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc-CceEEEEccccCCCcccc
Confidence            999999995442111110000     00000111  1122234455677778888888886 899999986543   334


Q ss_pred             EEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         452 KILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       452 ~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ..+.+|... |++++|.-+...+.+.+ |..|..|++
T Consensus       590 he~~ghs~~-vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  590 HEYGGHSSH-VTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeeccccce-eEEEEEeeCCceEEecCCCceEEEEEe
Confidence            567788876 99999999999888888 999999986

>KOG0973|consensus

Probab=99.97  E-value=1e-28  Score=249.55  Aligned_cols=281  Identities=16%  Similarity=0.269  Sum_probs=232.5

Q ss_pred             eeEEEEcCCCCEEEEec--CCCCeEEEEEcCC------------CceEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          84 WKKCCFSGDGEYVCAGS--ARQHALYIWEKSV------------GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~--~~~~~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      +.++..+|||..+|+|+  .| +.++||+.+.            .+.+.....|.+.+                 .|+.|
T Consensus        16 IfSIdv~pdg~~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv-----------------~CVR~   77 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSV-----------------NCVRF   77 (942)
T ss_pred             EEEEEecCCceeEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCce-----------------eEEEE
Confidence            66899999999999999  65 7888998642            22344555666666                 59999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCc------------------ccccccccccCCCcccccccccceEEEEECCCCCEEEE
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTR------------------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV  211 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  211 (622)
                      +|||++||+|+.|+.|.||.....                  +....+.+|           .+.|..++|+|++.+|++
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-----------~~DV~Dv~Wsp~~~~lvS  146 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-----------DSDVLDVNWSPDDSLLVS  146 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-----------CCccceeccCCCccEEEE
Confidence            999999999999999999988741                  012222222           246899999999999999


Q ss_pred             EeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEE
Q psy2110         212 GCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQ  284 (622)
Q Consensus       212 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~  284 (622)
                      ++.|++|.+|+..+.+.++.+.+|.+.|..+.|.|-|++|++-+.|++|+||++.+-...+.+.       ....+..+.
T Consensus       147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS  226 (942)
T KOG0973|consen  147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS  226 (942)
T ss_pred             ecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence            9999999999999999999999999999999999999999999999999999988766666665       224578899


Q ss_pred             EeCCCCeEEEEeeCCC---cEEEEEecCCceeecccCCCCceEEEEEeeC-----CC------------EEEEEecCCeE
Q psy2110         285 FHPRNDHMFLVCPMRH---AAVLVDTDGDHQIVPIDEDSDLSIVASFDRR-----GQ------------HVVTGNSKGKV  344 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~l~~~~~dg~i  344 (622)
                      |+|||.++....+.++   .+.+.+..+-..-..+-+|...+.++.|+|.     .+            .+|+|+.|++|
T Consensus       227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             cCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence            9999998776655544   5777777777778889999999999999873     11            67889999999


Q ss_pred             EEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         345 LVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       345 ~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      .||.....+++.... .....|..++|+|||..|+++|.||+|.++.+.+
T Consensus       307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            999998777765543 4567899999999999999999999999999874

>KOG0288|consensus

Probab=99.97  E-value=9.8e-30  Score=229.27  Aligned_cols=279  Identities=17%  Similarity=0.290  Sum_probs=240.3

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      .+.+.+..+.|-++...|++|+.| ..|.+|++...+  .+.++.|..+.+                 +++.|.++++.+
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~i-----------------t~~d~d~~~~~~  234 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNI-----------------TSIDFDSDNKHV  234 (459)
T ss_pred             ccccccceeEEccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCc-----------------ceeeecCCCceE
Confidence            345566788999999999999986 899999997665  667777777777                 699999999999


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      ++++.|+.+++|++...+...++.+|..           .|+++.|......+++|+.|.+|++||+....+.+++-. .
T Consensus       235 iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----------kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~  302 (459)
T KOG0288|consen  235 IAASNDKNLRLWNVDSLRLRHTLSGHTD-----------KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-G  302 (459)
T ss_pred             EeecCCCceeeeeccchhhhhhhccccc-----------ceeeehhhccccceeeccccchhhhhhhhhhheeccccc-c
Confidence            9999999999999999999999999874           489999988777799999999999999999888776543 2


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      ..+..|..+  ...+++|..|++|++||+++..+.......+.|+++..++++..++ +++.|..+.+.|+++......+
T Consensus       303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe-eecCCCceeeeecccccEEEEe
Confidence            455666665  5678999999999999999999999999999999999999998654 5589999999999998777666


Q ss_pred             cCCC----CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         317 DEDS----DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTT--AIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       317 ~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      ....    ...+.+.|||++.|+++|+.||.|+||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            5432    2366789999999999999999999999999999988886554  499999999999999999999999983

>KOG0299|consensus

Probab=99.97  E-value=2.2e-28  Score=223.79  Aligned_cols=299  Identities=19%  Similarity=0.276  Sum_probs=238.9

Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccc-cccc------ccCCCccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-IISA------HMHPEFDG  189 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~------~~~~~~~~  189 (622)
                      ...+..|.-++                 ++|+++|+++++++++.+++|.=|++.+++... .+..      |..+....
T Consensus       135 ~~~~~~H~~s~-----------------~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~  197 (479)
T KOG0299|consen  135 FRVIGKHQLSV-----------------TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKES  197 (479)
T ss_pred             ceeeccccCcc-----------------eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcc
Confidence            45566777776                 599999999999999999999999999987442 1111      22221111


Q ss_pred             ccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         190 ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       190 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      .-.+...+.+++.++||++|++|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|++|++|++....
T Consensus       198 r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  198 RKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             cccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            12344678999999999999999999999999999999999999999999999999888899999999999999998776


Q ss_pred             EEEEE-eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         270 CEQKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       270 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      .+.++ .|+..|.++.....++ .+.+++.|.++++|++.. .....+.++.+.+.|++|-. ..++++|+.+|.|.+|+
T Consensus       278 ~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEee
Confidence            66554 4889999988877655 677788999999999943 44455666777888888864 46889999999999999


Q ss_pred             CCCccEEEEEe-cC-----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110         349 CPALELKASFK-AS-----------TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT  416 (622)
Q Consensus       349 ~~~~~~~~~~~-~~-----------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (622)
                      +.+.+++.+.+ +|           +..|++++..|...++++|+.+|.|++|.+..        ..+.+..+....-..
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~--------g~r~i~~l~~ls~~G  426 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED--------GLRAINLLYSLSLVG  426 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC--------Cccccceeeeccccc
Confidence            99998887765 22           12799999999999999999999999999985        323445555545556


Q ss_pred             eeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         417 MWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       417 ~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      .+++++|+++|++|++|....+.+--|
T Consensus       427 fVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  427 FVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEEEEEccCCCEEEEeccccccccee
Confidence            778999999999888876545444444

>KOG0289|consensus

Probab=99.97  E-value=1.7e-28  Score=222.57  Aligned_cols=279  Identities=19%  Similarity=0.281  Sum_probs=240.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .+.++...|....+++|+.|..+.++|..+++.+..+++|...|+.+.++++...+++++.|..|+||...........+
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~  300 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR  300 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc
Confidence            46777777777789999999999999999999999999999999999999999999999999999999988776555555


Q ss_pred             -CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         276 -FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       276 -~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                       |..+|+.+..+|.|+ ++++++.++...+.|++++..+.....  ..-.+++++|+|||..+.+|..||.++|||+.++
T Consensus       301 ~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             cccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence             899999999999998 578889999999999999877765554  3345789999999999999999999999999999


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++.         .+.++++...... .+.+++|.+.|.||+.
T Consensus       380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK---------l~n~kt~~l~~~~-~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK---------LKNFKTIQLDEKK-EVNSLSFDQSGTYLGI  449 (506)
T ss_pred             cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh---------hcccceeeccccc-cceeEEEcCCCCeEEe
Confidence            99999999999999999999999999999999999999993         3445555443332 5788999999999999


Q ss_pred             eeCCCCeEEEEECC--CCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         433 GSARQHALYIWEKS--VGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       433 ~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ++. +-.|++++..  +...+..+..|.+. .+.+.|....+++++++ |..++++.+
T Consensus       450 ~g~-~l~Vy~~~k~~k~W~~~~~~~~~sg~-st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  450 AGS-DLQVYICKKKTKSWTEIKELADHSGL-STGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecc-eeEEEEEecccccceeeehhhhcccc-cceeeecccceEEeeccchhheEEeec
Confidence            976 6666666643  45567777778765 89999999999999999 988888754

>KOG2096|consensus

Probab=99.97  E-value=3.2e-28  Score=212.22  Aligned_cols=294  Identities=15%  Similarity=0.242  Sum_probs=210.1

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN   80 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~   80 (622)
                      ++.|++++||.||++|||++.|++|+||++...+...                                  -+.++....
T Consensus        86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----------------------------------Hr~~R~nve  131 (420)
T KOG2096|consen   86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE----------------------------------HRCIRQNVE  131 (420)
T ss_pred             CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh----------------------------------hhHhhcccc
Confidence            4689999999999999999999999999975422110                                  011122122


Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC---CceEEE---------EeccCcceeEEEEeecCccccccceeEEE
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV---GNLVKI---------LHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~---~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      -...+.++|+||-+-+++...+..++++|.+..   |.....         -+-|.-.+                 ..+-
T Consensus       132 ~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~-----------------i~iG  194 (420)
T KOG2096|consen  132 YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI-----------------INIG  194 (420)
T ss_pred             CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccce-----------------EEEe
Confidence            224467899999998887776778999998742   221111         11222222                 3677


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC---C
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL---T  225 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~---~  225 (622)
                      ....+.+|++++.|..|.+|++. |+.+..+.....           .-...+.||+|+++++++.--.|++|.+-   .
T Consensus       195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-----------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd  262 (420)
T KOG2096|consen  195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-----------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD  262 (420)
T ss_pred             ecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-----------cccceeeCCCCcEEEEecCCCCceEEEEEeccC
Confidence            77788999999999999999998 777777655442           23567999999999999999999999863   2


Q ss_pred             C-----ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         226 R-----GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       226 ~-----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      |     ..+..+++|...|..++|+++...+++.+.||+++|||++-.     +....          .+.++-.+    
T Consensus       263 G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-----Y~~~q----------Dpk~Lk~g----  323 (420)
T KOG2096|consen  263 GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-----YEAGQ----------DPKILKEG----  323 (420)
T ss_pred             cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----EecCC----------CchHhhcC----
Confidence            2     234578899999999999999999999999999999997521     00000          00000000    


Q ss_pred             cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEE
Q psy2110         301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~  379 (622)
                                .  ..+.........+..+|+|+.|+.... ..+++|..++++....++ .|...|.+++|+++|+++++
T Consensus       324 ----------~--~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  324 ----------S--APLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             ----------C--cchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence                      0  011111222336788999998887654 369999999988777665 78999999999999999988


Q ss_pred             EeCCCcEEEEe
Q psy2110         380 NTGDRLIRVYN  390 (622)
Q Consensus       380 ~~~d~~i~i~d  390 (622)
                      ++ |+.++++.
T Consensus       391 cG-dr~vrv~~  400 (420)
T KOG2096|consen  391 CG-DRYVRVIR  400 (420)
T ss_pred             ec-ceeeeeec
Confidence            77 67788775

>KOG0647|consensus

Probab=99.97  E-value=4.4e-28  Score=210.06  Aligned_cols=266  Identities=15%  Similarity=0.248  Sum_probs=211.9

Q ss_pred             eEEEEcC-CCCEEEEeeCCCcEEEEecCCc-ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         145 VTCAFNK-RGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      .+++||| ...+++.+|.||+||+|+++.. ....+....          ....|.+++|+.||..+++|+.|+.+++||
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~----------~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQS----------HDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCcccchhhhc----------cCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            5999999 4557778999999999999873 333221111          114689999999999999999999999999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGY--KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      +.+++ ...+..|.++|..+.|-+...  .|++|+.|.+|+.||++...++.++..+..++++..-..   +++++..+.
T Consensus       101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p---m~vVata~r  176 (347)
T KOG0647|consen  101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP---MAVVATAER  176 (347)
T ss_pred             ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc---eeEEEecCC
Confidence            99994 566778999999999987655  899999999999999999999999999999998876432   788899999


Q ss_pred             cEEEEEecCCceeec--ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc--cEEEEEecCCC---------CEEE
Q psy2110         301 AAVLVDTDGDHQIVP--IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL--ELKASFKASTT---------AIKS  367 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---------~i~~  367 (622)
                      .|.+|+++++.....  ...-.-.+.+++...+.+..+.|+-+|.+.|..+..+  +.-.+|+.|..         .|++
T Consensus       177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs  256 (347)
T KOG0647|consen  177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS  256 (347)
T ss_pred             cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence            999999976533221  1123445778888888888899999999999998876  44456666652         4788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         368 IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      |+|+|....|++++.||++.+||-+.         ...+..  ......++.+++|+.+|.++|.+..
T Consensus       257 i~FhP~hgtlvTaGsDGtf~FWDkda---------r~kLk~--s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  257 IAFHPVHGTLVTAGSDGTFSFWDKDA---------RTKLKT--SETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             eEeecccceEEEecCCceEEEecchh---------hhhhhc--cCcCCCccceeEecCCCCEEEEEee
Confidence            99999999999999999999999873         122222  2334567789999999999988765

>KOG2048|consensus

Probab=99.97  E-value=1.5e-26  Score=221.80  Aligned_cols=420  Identities=17%  Similarity=0.208  Sum_probs=282.9

Q ss_pred             EEEEecccccee----cccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEec
Q psy2110          25 VLVLSCPALELK----ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS  100 (622)
Q Consensus        25 v~vwd~~~~~~~----~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~  100 (622)
                      +|.+|.....+.    ....+.||++-.+|.|.+|++...-.         ............+-+++|++.++++-++.
T Consensus        18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---------~~~vi~g~~drsIE~L~W~e~~RLFS~g~   88 (691)
T KOG2048|consen   18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---------LEPVIHGPEDRSIESLAWAEGGRLFSSGL   88 (691)
T ss_pred             EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCce---------eeEEEecCCCCceeeEEEccCCeEEeecC
Confidence            444554443333    44567799999999999999864211         11111223345567899997776665554


Q ss_pred             CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccc
Q psy2110         101 ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       101 ~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~  180 (622)
                       + |.|.-||+.+++....+....+.+                 ++++.+|.+..++.|+.||.+..++...+.......
T Consensus        89 -s-g~i~EwDl~~lk~~~~~d~~gg~I-----------------Wsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~  149 (691)
T KOG2048|consen   89 -S-GSITEWDLHTLKQKYNIDSNGGAI-----------------WSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS  149 (691)
T ss_pred             -C-ceEEEEecccCceeEEecCCCcce-----------------eEEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence             4 999999999999999988888877                 699999999999999999988888777765443332


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec--------cCCcCeeEEEEcCCCCEEE
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS--------AHMHPVCSISWSRNGYKII  252 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~  252 (622)
                      .....         +.+.+++|+|++..++.|+.||.|++||..++..+....        ....-|+++.|-.++ .|+
T Consensus       150 l~rq~---------sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~  219 (691)
T KOG2048|consen  150 LMRQK---------SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIA  219 (691)
T ss_pred             ccccc---------ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEE
Confidence            22221         468999999999999999999999999999888765221        123357788887666 699


Q ss_pred             EEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEEE
Q psy2110         253 SASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVAS  327 (622)
Q Consensus       253 s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~  327 (622)
                      +|..-|+|.+||...+..++.+. |.+.|.+++..++++. +++++.|+.+..|...+..    .......|...+.+++
T Consensus       220 sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~-vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  220 SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR-VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe-EEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence            99999999999999999999888 8899999999998774 6777788888888776553    2344556788888888


Q ss_pred             EeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc
Q psy2110         328 FDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKS-IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI  406 (622)
Q Consensus       328 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  406 (622)
                      +.++  .+++|+.|..+.+-..+..+..........+-.+ +...|. ++|+.-=....+.+|.+......+.. +...+
T Consensus       299 v~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~-~~L~~~w~~h~v~lwrlGS~~~~g~~-~~~~L  374 (691)
T KOG2048|consen  299 VIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPE-NRLLVLWKAHGVDLWRLGSVILQGEY-NYIHL  374 (691)
T ss_pred             eecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCcc-ceEEEEeccccccceeccCccccccc-Chhhh
Confidence            8876  8999999998887665542211111100000011 112222 23333333455666666543222211 11111


Q ss_pred             eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC---------------------------------------
Q psy2110         407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV---------------------------------------  447 (622)
Q Consensus       407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~---------------------------------------  447 (622)
                      ..+. ......+.+.+.||+|++|+.+.-  ..++||.+..                                       
T Consensus       375 lkl~-~k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~  451 (691)
T KOG2048|consen  375 LKLF-TKEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIF  451 (691)
T ss_pred             eeee-cCCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccc
Confidence            1121 123355677899999999998873  2234443321                                       


Q ss_pred             ---------C--eeEEEEe-cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCc
Q psy2110         448 ---------G--NLVKILH-GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV  490 (622)
Q Consensus       448 ---------~--~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~  490 (622)
                               .  +.+..+. ...-..|+.++-+|+|++||..+ +|.|.+|++.+.
T Consensus       452 ~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~  507 (691)
T KOG2048|consen  452 SLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETL  507 (691)
T ss_pred             eeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccc
Confidence                     0  0000000 01122488999999999999999 999999999753

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.9e-27  Score=238.23  Aligned_cols=259  Identities=19%  Similarity=0.276  Sum_probs=198.1

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceE-------------EEEeccCcceeEEEEeecCccccccceeEEEEcC-
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-------------KILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-  151 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-  151 (622)
                      ....++++..+++++.+ .....|+...+..+             ..+.+|.+.|                 ++++|+| 
T Consensus        25 ~~~~~~d~~~~~~~n~~-~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V-----------------~~v~fsP~   86 (493)
T PTZ00421         25 PSTALWDCSNTIACNDR-FIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPI-----------------IDVAFNPF   86 (493)
T ss_pred             cccccCCCCCcEeECCc-eEEEEEecCCceEEeeccccccCCCCCceEeCCCCCE-----------------EEEEEcCC
Confidence            34566676555555543 55566665433222             1356677666                 6999999 


Q ss_pred             CCCEEEEeeCCCcEEEEecCCccc-------ccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEc
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGI-------AKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~  223 (622)
                      ++++|++|+.|++|++||+.++..       +..+.+|.           ..|.+++|+|++ ++|++++.|+.|++||+
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----------~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----------KKVGIVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----------CcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            889999999999999999976532       23333333           358999999986 69999999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC-CeEEEEEeCCCCeEEEEe---eC
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPS-PILKVQFHPRNDHMFLVC---PM  298 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~---~~  298 (622)
                      .+++....+.+|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+. |.+ ....+.|.+++..++.++   +.
T Consensus       156 ~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~  235 (493)
T PTZ00421        156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ  235 (493)
T ss_pred             CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999888776 443 345778999887666555   34


Q ss_pred             CCcEEEEEecCCce-eecccC-CCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCC
Q psy2110         299 RHAAVLVDTDGDHQ-IVPIDE-DSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKA-STTAIKSIEFARR  373 (622)
Q Consensus       299 ~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~  373 (622)
                      ++.+++||++.... ...... ....+....|+++++++++++ .|+.|++||+.+++++..... +..++.+++|.|.
T Consensus       236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            78999999986543 222222 233455667899999999887 599999999999988776553 4456788888885

>KOG0274|consensus

Probab=99.97  E-value=6.3e-28  Score=241.56  Aligned_cols=271  Identities=17%  Similarity=0.307  Sum_probs=239.5

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ..+++..|.  ..++++++.+ ++|.+|+..++..+.. +.||.+.|                 ++++|..-+.+|++|+
T Consensus       209 ~~~~~~q~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V-----------------~~l~~~~~~~~lvsgS  268 (537)
T KOG0274|consen  209 HVVLCLQLH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGV-----------------WGLAFPSGGDKLVSGS  268 (537)
T ss_pred             chhhhheee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCc-----------------eeEEEecCCCEEEEEe
Confidence            345566776  6678888865 8999999999999988 99999999                 5999988788999999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      .|.++++||+.+|++...+.+|..           .+.++..  ...++++|+.|.+|++|++.++..+..+.+|.++|+
T Consensus       269 ~D~t~rvWd~~sg~C~~~l~gh~s-----------tv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  269 TDKTERVWDCSTGECTHSLQGHTS-----------SVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             cCCcEEeEecCCCcEEEEecCCCc-----------eEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence            999999999999999999998863           3555554  446788899999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccC
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDE  318 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~  318 (622)
                      ++..+  +.++++|+.|++|++||+.++++++.+. |...|.++.+.+.  ..++.|+.|+.|++||+++. +++..+..
T Consensus       336 ~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  336 CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence            99997  7899999999999999999999999998 8899999988775  47899999999999999999 99999999


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         319 DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      |...+..+.  ..+++|++++.|++|++||..++++++.+.+ |...|..+++.  ...+++++.|+.+++||++.
T Consensus       412 h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  412 HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            999885544  4578999999999999999999999999998 67888888876  45788999999999999994

>KOG1446|consensus

Probab=99.97  E-value=4.9e-27  Score=205.63  Aligned_cols=278  Identities=13%  Similarity=0.202  Sum_probs=231.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...+.++.|+++|.+|++++.| .++++||..+++.++++..+.-.+                 ..+.|......++.++
T Consensus        14 ~~~i~sl~fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~-----------------~~~~Fth~~~~~i~sS   75 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGV-----------------DLACFTHHSNTVIHSS   75 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccc-----------------cEEEEecCCceEEEcc
Confidence            4567799999999999998876 699999999999999999887766                 3778877777676666


Q ss_pred             C--CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         161 N--DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       161 ~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      .  |.+||.-++.+++.++.+.+|..           .|..++.+|-+..+++++.|++|++||++..++...+.....+
T Consensus        76 tk~d~tIryLsl~dNkylRYF~GH~~-----------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p  144 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKYLRYFPGHKK-----------RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP  144 (311)
T ss_pred             CCCCCceEEEEeecCceEEEcCCCCc-----------eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence            5  88999999999999999999985           4999999999999999999999999999988887777644343


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTG--ECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                        .++|.|.|-.+|++.....|++||++.-  .+...+.    .......+.|+|+|+. ++.+...+.+++.|.-.+..
T Consensus       145 --i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 --IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             --ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCcE
Confidence              4789999999999988779999999854  3444554    2457889999999996 45566788899999888877


Q ss_pred             eecccCCCCc---eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         313 IVPIDEDSDL---SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      +..+..+...   ...++|+|+++++++|+.||+|.+|++++++.+..+++ +..++.++.|+|.-.++++++  ..+-+
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~f  299 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVF  299 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEE
Confidence            7666654433   26789999999999999999999999999999999998 688999999999877766664  56777


Q ss_pred             Eecc
Q psy2110         389 YNHQ  392 (622)
Q Consensus       389 ~d~~  392 (622)
                      |=..
T Consensus       300 w~p~  303 (311)
T KOG1446|consen  300 WLPD  303 (311)
T ss_pred             Eecc
Confidence            7544

>KOG0277|consensus

Probab=99.97  E-value=2.2e-28  Score=206.69  Aligned_cols=278  Identities=16%  Similarity=0.288  Sum_probs=220.0

Q ss_pred             EEEEECCC-CCEEEEEe-------CCCeEEEEEcCCCceEEEec--cCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECC
Q psy2110         198 VTCAFNKR-GTLLAVGC-------NDGRIVLWDFLTRGIAKIIS--AHMHPVCSISWSRN-GYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       198 ~~~~~s~~-g~~l~~~~-------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~  266 (622)
                      .++.|||- .++|+++.       ..|.+.|.++...+-+..+.  .-...+..++|+++ .+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            57889882 22333332       36889999986444343332  23578999999984 4678899999999999965


Q ss_pred             CC-cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC-CCEEEEEecCCe
Q psy2110         267 TG-ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGK  343 (622)
Q Consensus       267 ~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~  343 (622)
                      .. .+++.++ |...|.++.|++..+..+++++.|++|++|+...+..+.++.+|...|+.+.|+|. ...+++++.|+.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            33 4666666 88999999999999999999999999999999999999999999999999999995 688999999999


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEE
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC  422 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (622)
                      +++||++..-....+..|...|.++.|+. +.+.|++++.|+.|+.||++..        ..++..+.  .+...+.++.
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~--------r~pl~eL~--gh~~AVRkvk  241 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL--------RTPLFELN--GHGLAVRKVK  241 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc--------cccceeec--CCceEEEEEe
Confidence            99999986554455999999999999987 4567888999999999999952        23444443  3456778999


Q ss_pred             EcCCC-CeEEEeeCCCCeEEEEECCCCe-eEEEEecCCCCceeEEEECCCC-CEEEEEe-CCcEEEeec
Q psy2110         423 FSGDG-EYVCAGSARQHALYIWEKSVGN-LVKILHGTKGELLLDVVWHPVR-PIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       423 ~spdg-~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp~~-~~l~s~~-dg~v~iw~~  487 (622)
                      |||.. ..||++++ |-+++|||...+. .+.+...|. +-|..+.|++-. .++|+++ |+.++||+.
T Consensus       242 ~Sph~~~lLaSasY-DmT~riw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  242 FSPHHASLLASASY-DMTVRIWDPERQDSAIETVDHHT-EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cCcchhhHhhhccc-cceEEecccccchhhhhhhhccc-eEEeccccccccCceeeecccccceeeecc
Confidence            99965 56677776 9999999988544 344444444 449999999864 4899999 999999985

>KOG0274|consensus

Probab=99.97  E-value=5.9e-28  Score=241.75  Aligned_cols=280  Identities=18%  Similarity=0.328  Sum_probs=242.1

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc-cccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+..|.  ..++++++.+++|++|+..++..+.. +.+|..           .|.+++|..-+.+|++|+.|.++++||.
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-----------~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-----------GVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCC-----------CceeEEEecCCCEEEEEecCCcEEeEec
Confidence            577777  56899999999999999999988877 888874           5899999887889999999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .++++...+.+|...|.++...  ...+++|+.|.+|++|++.++.++..+. |..+|.++..+   ..++++++.|+.|
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTV  353 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceE
Confidence            9999999999999999998874  5578889999999999999999999999 99999999998   3379999999999


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc-cEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL-ELKASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      .+|+..+.+.+..+.+|...|+++.+... .++++|+.|+.|++||+++. +++.++.+|...+.++.+  .+++|++++
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~  430 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS  430 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence            99999999999999999999999988765 89999999999999999999 999999999988866654  577899999


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      .|++|++||..         ....++.+... +...+..+++.  ...+++++. ++.+++||+.++++.+.+-.+.
T Consensus       431 aD~~Ik~WD~~---------~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~-~~~~~l~dl~~~~~~~~l~~~~  494 (537)
T KOG0274|consen  431 ADGTIKLWDAE---------EGECLRTLEGR-HVGGVSALALG--KEEILCSSD-DGSVKLWDLRSGTLIRTLLSTD  494 (537)
T ss_pred             ccccEEEeecc---------cCceeeeeccC-CcccEEEeecC--cceEEEEec-CCeeEEEecccCchhhhhhhcc
Confidence            99999999998         44566666654 22444444544  356666665 9999999999999888774444

>KOG1445|consensus

Probab=99.97  E-value=1.1e-27  Score=227.14  Aligned_cols=202  Identities=11%  Similarity=0.099  Sum_probs=153.0

Q ss_pred             CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-------ceeecccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCC
Q psy2110         279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-------HQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~  350 (622)
                      .|+.+.|.|-....+++++.++.|++|.+..+       .+...+..|...|+++.|+|- ...|++++.|-+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            46778888877778999999999999998643       344567789999999999994 4688899999999999999


Q ss_pred             CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110         351 ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV  430 (622)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  430 (622)
                      +++....+.+|.+.|.+++|||+|+.+++.+.||+|++|+.+.        ...+++.-.+..+ ..-..+.|.-||+++
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs--------~e~pv~Eg~gpvg-tRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS--------REQPVYEGKGPVG-TRGARILWACDGRIV  779 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC--------CCCccccCCCCcc-CcceeEEEEecCcEE
Confidence            9999999999999999999999999999999999999999884        3334444444443 222457899999999


Q ss_pred             EEeeCC---CCeEEEEECCCC--eeEEEEecCCCCceeEEEECCCCCEEE-EEe-CCcEEEeecCC
Q psy2110         431 CAGSAR---QHALYIWEKSVG--NLVKILHGTKGELLLDVVWHPVRPIIA-SIS-SGVVSLWAQNQ  489 (622)
Q Consensus       431 ~~~~~~---d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~-dg~v~iw~~~~  489 (622)
                      ++.+.+   ...|.+||..+-  ..+.+..-.-...+.-..+.+|...|+ ++- |..|++|.+-.
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             EEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence            887763   346888987653  233332211111134445667777555 444 99999999854

>KOG0973|consensus

Probab=99.97  E-value=4.4e-28  Score=245.08  Aligned_cols=295  Identities=19%  Similarity=0.311  Sum_probs=235.2

Q ss_pred             CcceEEEEccCCcEEEecc--CCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           2 DLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~--~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      .+|.+++.+|||..+|||+  .||.++||+.+.--               .....++..           .+...-....
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl---------------~~~~~~~~~-----------l~k~l~~m~~   67 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL---------------DEKEEKNEN-----------LPKHLCTMDD   67 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeecccccc---------------chhhhhhcc-----------cchhheeecc
Confidence            4688999999999999999  89999999853210               000011110           1122223334


Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC-------C-----------ceEEEEeccCcceeEEEEeecCccccc
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-------G-----------NLVKILHGTKGELLLDVVEFDGALDCI  141 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~  141 (622)
                      +.+.+.|+.|||||++||+|+.| +.|.||....       |           +....+++|...|              
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD-~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV--------------  132 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDD-RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDV--------------  132 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCc-ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcc--------------
Confidence            55677899999999999999965 9999999762       1           3667888999888              


Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                         ..++|+|++.+||+++.|++|.||+..+.+.+..+..|.           +.|-.+.|.|-|++||+-+.|++|++|
T Consensus       133 ---~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~-----------s~VKGvs~DP~Gky~ASqsdDrtikvw  198 (942)
T KOG0973|consen  133 ---LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ-----------SLVKGVSWDPIGKYFASQSDDRTLKVW  198 (942)
T ss_pred             ---ceeccCCCccEEEEecccceEEEEccccceeeeeeeccc-----------ccccceEECCccCeeeeecCCceEEEE
Confidence               499999999999999999999999999999999999887           458899999999999999999999999


Q ss_pred             EcCCCceEEEeccCC------cCeeEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEE-eCCCCeEEEEEeCC--
Q psy2110         222 DFLTRGIAKIISAHM------HPVCSISWSRNGYKIISAST----DNNVCIWDVLTGECEQKY-RFPSPILKVQFHPR--  288 (622)
Q Consensus       222 d~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~--  288 (622)
                      ...+-...+.+..+.      ..+..+.|||||++|++...    -..+.|.+-.+.+.-..+ .|.+++.++.|+|.  
T Consensus       199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf  278 (942)
T KOG0973|consen  199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF  278 (942)
T ss_pred             EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh
Confidence            988777777766543      35788999999999998643    246888887777755544 48899999999982  


Q ss_pred             ------CC--------eEEEEeeCCCcEEEEEecCCceeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         289 ------ND--------HMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       289 ------~~--------~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                            |.        .++++|+.|+.+.+|.....+++.... .....|..++|+|||..|++++.||+|.++.+..
T Consensus       279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                  11        178899999999999998777765544 3567789999999999999999999999998864

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.8e-27  Score=235.92  Aligned_cols=251  Identities=10%  Similarity=0.137  Sum_probs=196.7

Q ss_pred             EeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------EEEEEe-CCCCeE
Q psy2110         212 GCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGE--------CEQKYR-FPSPIL  281 (622)
Q Consensus       212 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~v~  281 (622)
                      |+..+.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.        ++..+. |...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999998887888899999999999999996 7899999999999999998642        223333 778999


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS  361 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  361 (622)
                      +++|+|++..++++++.|+.+++||+++......+. +...+.+++|+++|.+|++++.|+.|+|||+++++.+.++.+|
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            999999998888899999999999999887766665 4567999999999999999999999999999999999999999


Q ss_pred             CCCEEEE-----EEcCCCCEEEEEeCCC----cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         362 TTAIKSI-----EFARRGNCLLVNTGDR----LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       362 ~~~i~~~-----~~s~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      .+.+...     .|++++.+|++++.|+    .|+|||++.        ...++..+........+......++|.++++
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~--------~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls  280 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN--------TTSALVTMSIDNASAPLIPHYDESTGLIYLI  280 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC--------CCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence            8765433     3458889999988764    799999984        1234443332222222222334556888888


Q ss_pred             eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110         433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                      |+. |+.|++|++..+.....-......++..++|.|...
T Consensus       281 GkG-D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        281 GKG-DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEC-CCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence            886 999999999877533322333445588999999754

>KOG0308|consensus

Probab=99.96  E-value=1.3e-28  Score=234.49  Aligned_cols=337  Identities=15%  Similarity=0.213  Sum_probs=270.6

Q ss_pred             CCCCEEEEecCCCCeEEEEEcCCCc------eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSVGN------LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      |+++||.+|+.| |.|++|+.....      .+..++.|..+++                 .++..-+++.|+++|.|-+
T Consensus        35 ~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-----------------DiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   35 PNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-----------------DIILCGNGKTLISASSDTT   96 (735)
T ss_pred             CCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHh-----------------hHHhhcCCCceEEecCCce
Confidence            567889999964 999999985332      3677888988884                 8888889999999999999


Q ss_pred             EEEEecCCc--ccccccccccCCCcccccccccceEEEEE-CCCCCEEEEEeCCCeEEEEEcCCCce--E--------EE
Q psy2110         165 IVLWDFLTR--GIAKIISAHMHPEFDGALDCISLAVTCAF-NKRGTLLAVGCNDGRIVLWDFLTRGI--A--------KI  231 (622)
Q Consensus       165 i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~dg~i~iwd~~~~~~--~--------~~  231 (622)
                      |++|+...+  -+...+..|.           ..|.|+++ .++..++|+|+-|+.|.+||++++..  +        ..
T Consensus        97 VK~W~~~~~~~~c~stir~H~-----------DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s  165 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHK-----------DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS  165 (735)
T ss_pred             EEEeecccCcchhHhhhhccc-----------chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence            999998876  4666666665           46899999 88889999999999999999997732  2        22


Q ss_pred             ec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         232 IS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       232 ~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      +. ++..+|++++.++.|..|++|+..+.+++||.++++.+..++ |...|..+..+++|.. +++++.|++|++||+..
T Consensus       166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccc
Confidence            33 788999999999999999999999999999999998877777 8899999999999985 78899999999999999


Q ss_pred             CceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy2110         310 DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVY  389 (622)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~  389 (622)
                      .+++.++..|...+.++..+|+=.++++|+.||.|..-|+++......+-....+|..+..+...+.+-+++.|+.|+-|
T Consensus       245 QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW  324 (735)
T KOG0308|consen  245 QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW  324 (735)
T ss_pred             cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence            99999999999999999999999999999999999999999865444444556778888887665666788889999999


Q ss_pred             ecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECC
Q psy2110         390 NHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  469 (622)
                      .....                          ..+++.|++....+  +....+.+.. ..+-.+++|...  +..-+.-.
T Consensus       325 ~~~~~--------------------------~~l~~s~~~~~~~T--~~~~~~~~~~-~tp~~vi~Gg~a--i~k~~mL~  373 (735)
T KOG0308|consen  325 KLEPD--------------------------IALSVSGDLDFFST--DSNNHSCDLT-NTPDSVIPGGAA--IKKHAMLN  373 (735)
T ss_pred             CCccc--------------------------cccccCCCCCcccc--cCCCcccccc-CCCceeccCchh--hhhhhhhc
Confidence            77620                          14455555544222  3333444432 133444555443  67777778


Q ss_pred             CCCEEEEEe-CCcEEEeecC
Q psy2110         470 VRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       470 ~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +.+.+.+=. .|.+.+||+-
T Consensus       374 dkRhVlTkDa~gnv~lwDIl  393 (735)
T KOG0308|consen  374 DKRHVLTKDAKGNVALWDIL  393 (735)
T ss_pred             CcceEeeecCCCCEEEEEee
Confidence            889999988 9999999985

>KOG0641|consensus

Probab=99.96  E-value=1.4e-26  Score=192.26  Aligned_cols=307  Identities=16%  Similarity=0.180  Sum_probs=231.9

Q ss_pred             hhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          75 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        75 ~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      +..+.....+.+++|.|.|.+.++|+.. .+++|--...  ++....+|...+......+.........|.|.+|+|+|.
T Consensus        26 i~~l~dsqairav~fhp~g~lyavgsns-kt~ric~yp~--l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   26 INILEDSQAIRAVAFHPAGGLYAVGSNS-KTFRICAYPA--LIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             EEEecchhheeeEEecCCCceEEeccCC-ceEEEEcccc--ccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            3444555667789999999999999965 7888764321  111112333333221222222222233346999999999


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC----CCEEEEEeC-CCeEEEEEcCCCceE
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR----GTLLAVGCN-DGRIVLWDFLTRGIA  229 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~-dg~i~iwd~~~~~~~  229 (622)
                      +|++|+.|++|++..++...+...  ++..+    .......|..++|-.+    |.+|++++. |..|++-|..+++..
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~--g~dle----~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~  176 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNAT--GHDLE----FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF  176 (350)
T ss_pred             eEEecCCCceEEEEeccccccccc--Cccee----eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence            999999999999987665332211  11000    0001135788888543    457777653 677888888899999


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---C-----CCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---F-----PSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-----~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      +.+.+|.+.|.++ ++-+|-.|++|+.|.+|++||++-..++..+.   +     .+.|.+++..|.|+ +++++..|..
T Consensus       177 ~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dss  254 (350)
T KOG0641|consen  177 HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSS  254 (350)
T ss_pred             eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCc
Confidence            9999999999876 34478899999999999999999988888775   2     25688999999887 7899999999


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc----cEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      ..+||++.++.+..+..|...|.++.|+|...++++++.|..|++-|+...    -++.....|...+..+.|+|..-.+
T Consensus       255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sf  334 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSF  334 (350)
T ss_pred             eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcccee
Confidence            999999999999999999999999999999999999999999999998632    2344555788888999999999999


Q ss_pred             EEEeCCCcEEEEecc
Q psy2110         378 LVNTGDRLIRVYNHQ  392 (622)
Q Consensus       378 ~~~~~d~~i~i~d~~  392 (622)
                      ++.+.|.++.+|-+.
T Consensus       335 isssadkt~tlwa~~  349 (350)
T KOG0641|consen  335 ISSSADKTATLWALN  349 (350)
T ss_pred             eeccCcceEEEeccC
Confidence            999999999999764

>KOG0639|consensus

Probab=99.96  E-value=2.3e-28  Score=225.49  Aligned_cols=296  Identities=19%  Similarity=0.334  Sum_probs=244.0

Q ss_pred             CCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccc---cc
Q psy2110          67 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI---SL  143 (622)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~  143 (622)
                      +.+...+.+.++.+...|.++.+|...+++.+|+  .|.|+|||+...       +...++        .+++|.   ++
T Consensus       405 gIPrharq~~tL~HGEvVcAvtIS~~trhVyTgG--kgcVKVWdis~p-------g~k~Pv--------sqLdcl~rdny  467 (705)
T KOG0639|consen  405 GIPRHARQINTLAHGEVVCAVTISNPTRHVYTGG--KGCVKVWDISQP-------GNKSPV--------SQLDCLNRDNY  467 (705)
T ss_pred             CCCchHHhhhhhccCcEEEEEEecCCcceeEecC--CCeEEEeeccCC-------CCCCcc--------ccccccCcccc
Confidence            3455556677777777777889999999999999  389999998633       122222        122332   35


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      |+++.+.|||+.|++|+.-.++.|||+...............         -...+++.+||.++.++++.||.|.|||+
T Consensus       468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssa---------paCyALa~spDakvcFsccsdGnI~vwDL  538 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA---------PACYALAISPDAKVCFSCCSDGNIAVWDL  538 (705)
T ss_pred             eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcc---------hhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence            689999999999999999999999999875332222211110         13567899999999999999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .+...++.|++|...+.||..++||..|.+|+-|++||.||+++++.++...+.+.|.++.++|++.+ +++|-.++.+.
T Consensus       539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dW-lavGMens~ve  617 (705)
T KOG0639|consen  539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDW-LAVGMENSNVE  617 (705)
T ss_pred             ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccc-eeeecccCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999985 66777777777


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      +...... ....+..|...|.++.|.+.|+++++.+.|+-+..|.+.-|..+...+.. ..|.+..+|.|.+++++|+.|
T Consensus       618 vlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  618 VLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             EEecCCc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCC
Confidence            7776543 34556778899999999999999999999999999999888877766644 778999999999999999999


Q ss_pred             CcEEEEec
Q psy2110         384 RLIRVYNH  391 (622)
Q Consensus       384 ~~i~i~d~  391 (622)
                      ....+|.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            88888865

>KOG0268|consensus

Probab=99.96  E-value=4.8e-29  Score=221.09  Aligned_cols=281  Identities=17%  Similarity=0.234  Sum_probs=231.8

Q ss_pred             cceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      ..|.+++=+|.. ..+++|+.||.|++||+.+..+.+.+.+|.+.|..|++..  ..+++++.|.+|+.|-+.. .+..+
T Consensus        67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~t  143 (433)
T KOG0268|consen   67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHT  143 (433)
T ss_pred             cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Cccee
Confidence            357888888876 6899999999999999999999999999999999999976  6789999999999999875 47777


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~  352 (622)
                      +...+.+..+.-+..+. .+++|+  ..|.+||.....++..+.-..+.+.++.|+|.. ..|+++..|+.|.+||+++.
T Consensus       144 ilg~s~~~gIdh~~~~~-~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~  220 (433)
T KOG0268|consen  144 ILGKSVYLGIDHHRKNS-VFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA  220 (433)
T ss_pred             eeccccccccccccccc-cccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence            77777777777665444 455554  458999999999999999889999999999976 45666779999999999999


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      .+++.+... ..-+.|+|+|.+--+++++.|..++.||++.        -..++..+.++.  ..+..+.|||.|+-+++
T Consensus       221 ~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~--------l~~p~~v~~dhv--sAV~dVdfsptG~Efvs  289 (433)
T KOG0268|consen  221 SPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRN--------LSRPLNVHKDHV--SAVMDVDFSPTGQEFVS  289 (433)
T ss_pred             Cccceeeee-ccccceecCccccceeeccccccceehhhhh--------hcccchhhcccc--eeEEEeccCCCcchhcc
Confidence            988766533 3456899999888889999999999999984        223455555443  45678999999999999


Q ss_pred             eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCcccc
Q psy2110         433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQVENW  493 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~~~  493 (622)
                      |+. |.+|+||....+.....+....-..|.+|.||-|.+++++|+ |+.|++|...-.+..
T Consensus       290 gsy-DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  290 GSY-DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ccc-cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            998 999999999888766655544434499999999999999999 899999998754444

>KOG0294|consensus

Probab=99.96  E-value=4.9e-27  Score=204.81  Aligned_cols=263  Identities=19%  Similarity=0.310  Sum_probs=215.6

Q ss_pred             EEEecCCCCeEEEEEcCCC------------ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          96 VCAGSARQHALYIWEKSVG------------NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        96 l~~~~~~~~~i~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      |++|++. ..|.-+++.-.            .++..+..|.+.+                 ++++.+  +.++|+||.|-
T Consensus         4 iIvGtYE-~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~si-----------------tavAVs--~~~~aSGssDe   63 (362)
T KOG0294|consen    4 IIVGTYE-HVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSI-----------------TALAVS--GPYVASGSSDE   63 (362)
T ss_pred             EEEeeee-eEEEEEEeccCccccccccceeeeccccccccccce-----------------eEEEec--ceeEeccCCCC
Confidence            5677765 56655554311            1234455666666                 688876  88999999999


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeE
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT--LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCS  241 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  241 (622)
                      +|+|||+.....+..+..|.           ..|+++.|.+.-.  .|++|+.||.|.+|+.....++..+++|.+.|+.
T Consensus        64 tI~IYDm~k~~qlg~ll~Ha-----------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~  132 (362)
T KOG0294|consen   64 TIHIYDMRKRKQLGILLSHA-----------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTD  132 (362)
T ss_pred             cEEEEeccchhhhcceeccc-----------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccce
Confidence            99999999988887777774           4589999999875  8999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC
Q psy2110         242 ISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD  321 (622)
Q Consensus       242 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  321 (622)
                      ++.+|.+++-++.+.|+.++.||+-.|+.....+.......+.|+|.|.++++.+  ...|-+|.+.+......+... .
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~~i~~~-~  209 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFREIENP-K  209 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhhhhhcc-c
Confidence            9999999999999999999999999999888888777777799999999766654  455777877765444444333 3


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEeccc
Q psy2110         322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF--ARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      .+.++.|. ++..+++|..++.|.+||..+..+...+.+|...|.++.+  .|++.+|+++++||.|++||++.
T Consensus       210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            34455553 5678899999999999999999999999999999999985  56788999999999999999984

>KOG0268|consensus

Probab=99.96  E-value=4.3e-29  Score=221.42  Aligned_cols=278  Identities=12%  Similarity=0.204  Sum_probs=233.8

Q ss_pred             cccceeEEEEcCCC-CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          80 NKTMWKKCCFSGDG-EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        80 ~~~~~~~~~~sp~~-~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      +..++.|++=+|+. ..+++|+.| |.|++||+.+..++.++..|.+.|                 ..+++..  ..+++
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V-----------------~Gi~v~~--~~~~t  124 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLV-----------------RGICVTQ--TSFFT  124 (433)
T ss_pred             cccccchhhcCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCce-----------------eeEEecc--cceEE
Confidence            44567788989987 678888876 999999999999999999999998                 4888876  67899


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      ++.|++|+.|.+... ...++.+.            +.+..+.-+..+..+++++.  .|.|||.....+++.+.-....
T Consensus       125 vgdDKtvK~wk~~~~-p~~tilg~------------s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dt  189 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGP-PLHTILGK------------SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADS  189 (433)
T ss_pred             ecCCcceeeeeccCC-cceeeecc------------ccccccccccccccccccCc--eeeecccccCCccceeecCCCc
Confidence            999999999987652 33333222            34566666666778888764  6999999988899999888889


Q ss_pred             eeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecc
Q psy2110         239 VCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPI  316 (622)
Q Consensus       239 v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~  316 (622)
                      |.++.|+|- ...|++++.|+.|.+||++++.+++.+.....-+.++|+| ....|+++..|..++.+|++.. .++...
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhh
Confidence            999999994 4567788899999999999999999988888889999999 6667899999999999999864 677788


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..|...+..+.|+|.|+-+++|+.|.+|+||..+.+.....+. .....|.++.||.|.+++++||.|+.|++|....
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            8899999999999999999999999999999998776443332 2235689999999999999999999999998774

>KOG0289|consensus

Probab=99.96  E-value=3.1e-27  Score=214.46  Aligned_cols=281  Identities=17%  Similarity=0.214  Sum_probs=241.3

Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      .+.++...|....+++|+.|.++.++|..+++.+..+.+|..           .|+.+.|+|+...+++++.|..|++|.
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-----------ki~~v~~~~~~~~v~~aSad~~i~vws  289 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK-----------KITSVKFHKDLDTVITASADEIIRVWS  289 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcce-----------EEEEEEeccchhheeecCCcceEEeec
Confidence            346777777778999999999999999999999999999975           489999999999999999999999999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---CCeEEEEEeCCCCeEEEEeeCC
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP---SPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ............|..+|+.+..+|.|.||++++.|++..+.|++++.++....+.   -.+++.+|||||- +|.++..|
T Consensus       290 ~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d  368 (506)
T KOG0289|consen  290 VPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPD  368 (506)
T ss_pred             cccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCC
Confidence            9888888888999999999999999999999999999999999999998887764   3489999999986 78899999


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLL  378 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~  378 (622)
                      +.+++||+.++..+..+.+|.+.|..++|+.+|-++++++.|+.|++||++..+...++.... ..+.++.|.+.|.+|+
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence            999999999999999999999999999999999999999999999999999988777777443 4799999999999999


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      .++.|=.|++++-..       .....+..+..+.  ...+.+.|....+++++++. |..++++.+
T Consensus       449 ~~g~~l~Vy~~~k~~-------k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~sm-d~~l~~~a~  505 (506)
T KOG0289|consen  449 IAGSDLQVYICKKKT-------KSWTEIKELADHS--GLSTGVRFGEHAQYLASTSM-DAILRLYAL  505 (506)
T ss_pred             eecceeEEEEEeccc-------ccceeeehhhhcc--cccceeeecccceEEeeccc-hhheEEeec
Confidence            998776666665431       1222333332222  24467799999999999998 777777753

>KOG0299|consensus

Probab=99.96  E-value=7.2e-27  Score=213.96  Aligned_cols=292  Identities=15%  Similarity=0.153  Sum_probs=232.6

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE-EEec------cCcceeEEEEeecCccccccceeEEEEcC
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK-ILHG------TKGELLLDVVEFDGALDCISLAVTCAFNK  151 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~-~~~~------~~~~v~~~~~~~~~~~~~~~~v~~~~~s~  151 (622)
                      .|+..++||+++|+++++++++.+ ++|.-|++.+|+... .+..      |..+...    ..  ......+.+++.|+
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~----~r--~~h~keil~~avS~  212 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE----SR--KGHVKEILTLAVSS  212 (479)
T ss_pred             cccCcceEEEeeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCc----cc--ccccceeEEEEEcC
Confidence            466678899999999999999976 899999999887552 1111      2222210    00  12333446999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      ||++||+|+.|..|.||+..+.+.++.+.+|..           .|.+++|-..-..|++++.|+.|++|+++....+.+
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----------~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----------AVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhccccccc-----------ceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence            999999999999999999999999999888874           489999998888999999999999999999999999


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      +.+|...|.+|....-++.+-+|+.|+++++|++.....+....+.+.+.+++|-.+.  -|++|+.+|.|.+|++...+
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccC
Confidence            9999999999999888877777779999999999543333333367789999998765  48999999999999998877


Q ss_pred             eeecccC------------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc----cEEEEEecCCCCEEEEEEcCCCC
Q psy2110         312 QIVPIDE------------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELKASFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       312 ~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~  375 (622)
                      ++.....            +...+++++..|...++++|+.+|.|++|-+..+    +++..+. -.+.|++++|+++|+
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk  438 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGK  438 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCC
Confidence            6654321            1237889999999999999999999999998876    3555555 458899999999999


Q ss_pred             EEEEE-eCCCcEEEEec
Q psy2110         376 CLLVN-TGDRLIRVYNH  391 (622)
Q Consensus       376 ~l~~~-~~d~~i~i~d~  391 (622)
                      .++++ +....+--|-.
T Consensus       439 ~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  439 RIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             EEEEecccccccceeeE
Confidence            77776 44444444433

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.4e-25  Score=216.31  Aligned_cols=288  Identities=15%  Similarity=0.148  Sum_probs=216.8

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEe
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      ..+++++.|+.|++||+.+++....+..+.            .+..++|+|+|+.+ ++++.++.|++||..+++....+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~------------~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~   69 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ------------RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL   69 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC------------CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec
Confidence            578899999999999999887777665432            24578999999976 56677899999999998887777


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         233 SAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ..+.. +..++|+|+++.++++ +.++.|++||+.+++.+..+.....+.+++|+|++..++++......+.+||..+..
T Consensus        70 ~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~  148 (300)
T TIGR03866        70 PSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE  148 (300)
T ss_pred             cCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence            65543 5678999999977655 458999999999988888777666678999999998655554444567788987765


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCC-------CCEEEEEEcCCCCEEEEE-eC
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKAST-------TAIKSIEFARRGNCLLVN-TG  382 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~-~~  382 (622)
                      ....... ......++|+++++++++++ .++.|++||+.+++.+..+..+.       .....++|+|++++++++ +.
T Consensus       149 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       149 IVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             EEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence            5443322 23346789999999886554 58999999999998877665321       123468899999986654 45


Q ss_pred             CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCce
Q psy2110         383 DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELL  462 (622)
Q Consensus       383 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  462 (622)
                      ++.|.+||+.+         .+....+.   ....+.+++|+|+|++|+++...++.|++||+.+++++..+.... . .
T Consensus       228 ~~~i~v~d~~~---------~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~-~  293 (300)
T TIGR03866       228 ANRVAVVDAKT---------YEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-L-P  293 (300)
T ss_pred             CCeEEEEECCC---------CcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-c-c
Confidence            67899999873         22222221   122456789999999999876558999999999999999987653 3 7


Q ss_pred             eEEEECC
Q psy2110         463 LDVVWHP  469 (622)
Q Consensus       463 ~~v~~sp  469 (622)
                      +.++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0641|consensus

Probab=99.96  E-value=2.8e-25  Score=184.48  Aligned_cols=279  Identities=15%  Similarity=0.249  Sum_probs=223.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCC------C-----c----eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLT------R-----G----IAKIISAHMHPVCSISWSRNGYKIISASTDNNV  260 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~------~-----~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  260 (622)
                      .|.+++|+|.|.+.++|+...+++|.....      +     +    ..+.-+.|.+.|+|.+|+|+|.+|++|+.|.+|
T Consensus        34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i  113 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI  113 (350)
T ss_pred             heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence            588999999999999999999988864321      1     0    113345789999999999999999999999999


Q ss_pred             EEEECCCCcEE-----EEEe-CCCCeEEEEEeCC---CCeEEEE-eeCCCcEEEEEecCCceeecccCCCCceEEEEEee
Q psy2110         261 CIWDVLTGECE-----QKYR-FPSPILKVQFHPR---NDHMFLV-CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR  330 (622)
Q Consensus       261 ~iwd~~~~~~~-----~~~~-~~~~v~~~~~~~~---~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  330 (622)
                      ++..++...+.     ..+. |.+.|..++|..+   +..++++ +..|..|++-|...++....+.+|.+.|..+ ++-
T Consensus       114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-ysw  192 (350)
T KOG0641|consen  114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSW  192 (350)
T ss_pred             EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEe
Confidence            99877654332     2233 7899999999653   3345554 4457788898999999999999999988765 666


Q ss_pred             CCCEEEEEecCCeEEEEeCCCccEEEEEec-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCC
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALELKASFKA-------STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP  403 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  403 (622)
                      +|-.+++|+.|.+|++||++-..++.++..       ....|.+++..|.|++|+++-.|....+||++         ..
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir---------g~  263 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR---------GG  263 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee---------CC
Confidence            788999999999999999998888877652       23679999999999999999999999999999         44


Q ss_pred             CcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC----eeEEEEecCCCCceeEEEECCCCCEEEEEe-
Q psy2110         404 EPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVWHPVRPIIASIS-  478 (622)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-  478 (622)
                      ++++.+..  +...+.++.|||...|+++++. |..|++-|+...    -++.....|.+. +..+.|+|..-.+++.+ 
T Consensus       264 r~iq~f~p--hsadir~vrfsp~a~yllt~sy-d~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssa  339 (350)
T KOG0641|consen  264 RMIQRFHP--HSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSA  339 (350)
T ss_pred             ceeeeeCC--CccceeEEEeCCCceEEEEecc-cceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccC
Confidence            66777653  4456789999999999999998 889999998631    123445567776 88899999988777777 


Q ss_pred             CCcEEEeecC
Q psy2110         479 SGVVSLWAQN  488 (622)
Q Consensus       479 dg~v~iw~~~  488 (622)
                      |.++.+|.++
T Consensus       340 dkt~tlwa~~  349 (350)
T KOG0641|consen  340 DKTATLWALN  349 (350)
T ss_pred             cceEEEeccC
Confidence            9999999875

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.3e-25  Score=225.55  Aligned_cols=247  Identities=15%  Similarity=0.228  Sum_probs=193.3

Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCc--------eE
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRG--------IA  229 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~--------~~  229 (622)
                      |+.++.|++|+......+..+.+|.           ..|.+++|+|+ +++|++|+.|+.|++|++.++.        ++
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~-----------~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~  118 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHT-----------SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ  118 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCC-----------CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence            5678899999987766666666665           35899999997 7899999999999999997642        34


Q ss_pred             EEeccCCcCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         230 KIISAHMHPVCSISWSRNGYK-IISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ..+.+|...|.+++|+|++.. |++++.|++|+|||+++++....+.+...|.+++|+|+|. ++++++.++.+++||++
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECC
Confidence            567899999999999998876 4688999999999999999888787888999999999998 56777889999999999


Q ss_pred             CCceeecccCCCCceEEE-----EEeeCCCEEEEEecCC----eEEEEeCCC-ccEEEEEe--cCCCCEEEEEEcCCCCE
Q psy2110         309 GDHQIVPIDEDSDLSIVA-----SFDRRGQHVVTGNSKG----KVLVLSCPA-LELKASFK--ASTTAIKSIEFARRGNC  376 (622)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~  376 (622)
                      ++..+..+..|.+.+...     .|++++.+|++++.++    .|+|||+++ .+++..+.  .+.+.+......++|.+
T Consensus       198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l  277 (568)
T PTZ00420        198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI  277 (568)
T ss_pred             CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE
Confidence            998888888887754332     3458889999887664    799999985 55665544  33344444444566889


Q ss_pred             EEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         377 LLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       377 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      +++|+.|+.|++|++..          ..+..+.......+...++|.|..
T Consensus       278 ~lsGkGD~tIr~~e~~~----------~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSL----------GSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEECCCeEEEEEccC----------CcEEeecccccCCCccceEEcccc
Confidence            99999999999999973          123334444444556678999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.6e-25  Score=215.12  Aligned_cols=256  Identities=14%  Similarity=0.154  Sum_probs=195.2

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CND  162 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~d  162 (622)
                      +.+++|+|+++.+++++..++.|++||..+++....+..+...                  ..++|+|+++.++++ +.+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~g~~l~~~~~~~   94 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP------------------ELFALHPNGKILYIANEDD   94 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc------------------cEEEECCCCCEEEEEcCCC
Confidence            3468999999987554434589999999999887777655443                  378999999977654 568


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-eEEEEEcCCCceEEEeccCCcCeeE
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-RIVLWDFLTRGIAKIISAHMHPVCS  241 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  241 (622)
                      +.|++||+.+++.+..+....            .+.+++|+|+|++++++..++ .+.+||..+++....+.. .....+
T Consensus        95 ~~l~~~d~~~~~~~~~~~~~~------------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~  161 (300)
T TIGR03866        95 NLVTVIDIETRKVLAEIPVGV------------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF  161 (300)
T ss_pred             CeEEEEECCCCeEEeEeeCCC------------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence            999999998876655543221            246789999999999888765 467789888776655432 234578


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCC------C--CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         242 ISWSRNGYKIISA-STDNNVCIWDVLTGECEQKYRFP------S--PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       242 ~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~------~--~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      ++|++++++|+.+ ..++.|++||+.+++....+...      .  ....++|+|+++.++++...++.+.+||+.+.+.
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            9999999988655 45899999999999887766522      1  2346889999998777777777899999987765


Q ss_pred             eecccCCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC
Q psy2110         313 IVPIDEDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKASTTAIKSIEFAR  372 (622)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  372 (622)
                      ..... +...+.+++|+|+|++|+++ ..+|.|.+||+.+++++..++.. ...++++++|
T Consensus       242 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       242 LDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            54432 34568899999999999886 45899999999999999998865 4558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055|consensus

Probab=99.95  E-value=1.8e-26  Score=211.35  Aligned_cols=284  Identities=13%  Similarity=0.159  Sum_probs=227.3

Q ss_pred             ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCe
Q psy2110         141 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGR  217 (622)
Q Consensus       141 ~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~  217 (622)
                      .+.|+++.|+|....|++|+.|++++||.+....  .++.+....           .+|.+++|.|+|. .+++++....
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-----------fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-----------FPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc-----------CccceeeecCCCceEEEecccceE
Confidence            3456899999999999999999999999886532  222222222           4588999999999 8899999999


Q ss_pred             EEEEEcCCCceEE--EeccCC-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         218 IVLWDFLTRGIAK--IISAHM-HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       218 i~iwd~~~~~~~~--~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      ++.||+.+.+..+  .+.++. ..+.....++++++|+..+..|.|.+....+++.+..+...+.|..++|+.+++. ++
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~-l~  360 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKE-LL  360 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcE-EE
Confidence            9999999876543  333443 4577888999999999999999999999999999999999999999999999975 55


Q ss_pred             EeeCCCcEEEEEecCCceeecccCCCCc-eEEEEEeeCCCEEEEEecCCeEEEEeCCC------ccEEEEEecCCCCEEE
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVPIDEDSDL-SIVASFDRRGQHVVTGNSKGKVLVLSCPA------LELKASFKASTTAIKS  367 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~  367 (622)
                      +++.+|.|++||++...++..+...... -+.++.++++.++|+|+..|.|.|||..+      .+++..+..-...|++
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its  440 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS  440 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence            5556779999999999888777654432 35688899999999999999999999653      4577777777788999


Q ss_pred             EEEcCCCCEEEEEeC--CCcEEEEecccccccCCCCCCCcceeeeccccc-eeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         368 IEFARRGNCLLVNTG--DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                      ++|+++++.||.+|.  ...+++-.+..         ......++..... ..+++++|||.|.|+|.|.. +|.+.+|.
T Consensus       441 l~Fn~d~qiLAiaS~~~knalrLVHvPS---------~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~k  510 (514)
T KOG2055|consen  441 LQFNHDAQILAIASRVKKNALRLVHVPS---------CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFK  510 (514)
T ss_pred             eeeCcchhhhhhhhhccccceEEEeccc---------eeeeccCCCCCCcccceEEEEecCCCceEEeecC-CCceeeEe
Confidence            999999999998875  67788888762         2222223222222 34578999999999999997 99999998


Q ss_pred             CC
Q psy2110         445 KS  446 (622)
Q Consensus       445 ~~  446 (622)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            64

>KOG0647|consensus

Probab=99.95  E-value=1e-25  Score=195.49  Aligned_cols=272  Identities=14%  Similarity=0.210  Sum_probs=213.8

Q ss_pred             cceEEEEECC-CCCEEEEEeCCCeEEEEEcCC-CceE-EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         195 SLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLT-RGIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       195 ~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      ..|.+++||| ...++++++.|++||+|++.. +... +....|.++|.+++|+.||..+++|+.|+++++||+.+++..
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~  107 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS  107 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee
Confidence            4689999999 555667899999999999986 3332 455679999999999999999999999999999999999888


Q ss_pred             EEEeCCCCeEEEEEeCCCC-eEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         272 QKYRFPSPILKVQFHPRND-HMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      +.-.|..+|..+.|-+... .++++|+.|.+++.||++...++..+..... ++++  +--...++++..+..|.+|+++
T Consensus       108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~--Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAA--DVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeeh--hccCceeEEEecCCcEEEEEcC
Confidence            8888999999999987553 5789999999999999998888777665332 3332  2334578888999999999998


Q ss_pred             CccEEEE-Ee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc-------ceeeeeE
Q psy2110         351 ALELKAS-FK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN-------KTMWKKC  421 (622)
Q Consensus       351 ~~~~~~~-~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  421 (622)
                      ++..... .. .-.-.+++++..++....+.|+-+|.+.+..++....       ..-..++-|..       -..++++
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------~~nFtFkCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------KDNFTFKCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-------cCceeEEEeccCCCCCCceEEecce
Confidence            7643221 11 2334688999999988889999999999999884211       11122222221       2356789


Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      +|+|.-..|+++++ ||++.+||......++....|... |++.+|+.+|.++|-+.
T Consensus       258 ~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~s~~~~qp-Itcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGS-DGTFSFWDKDARTKLKTSETHPQP-ITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             EeecccceEEEecC-CceEEEecchhhhhhhccCcCCCc-cceeEecCCCCEEEEEe
Confidence            99999899999998 999999999887778777777765 99999999999887654

>KOG0646|consensus

Probab=99.95  E-value=2.7e-26  Score=210.69  Aligned_cols=326  Identities=14%  Similarity=0.203  Sum_probs=244.6

Q ss_pred             EecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCcccc
Q psy2110          98 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIA  176 (622)
Q Consensus        98 ~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~~~~  176 (622)
                      +++.+...+.+||+.+|....++++......                .++..- .+.+++++.. ...|.+|.+......
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~----------------~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~   74 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQA----------------ASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQV   74 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccc----------------hhhhhh-chhheeeecccCccccccccCchhhh
Confidence            3455556799999999999999887632220                111111 2346665543 457899988764333


Q ss_pred             cccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC
Q psy2110         177 KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST  256 (622)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  256 (622)
                      .  ...         .....+.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+++.|+.||.+|++|+.
T Consensus        75 ~--q~~---------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   75 V--QYI---------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             h--hhc---------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            3  111         11145899999999999999989999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--CCE
Q psy2110         257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--GQH  334 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  334 (622)
                      ||.|.+|.+..                         ++....++        +..+...+..|.-.|+.+...+.  ..+
T Consensus       144 Dg~V~vW~l~~-------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  144 DGAVLVWLLTD-------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNAR  190 (476)
T ss_pred             CccEEEEEEEe-------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccce
Confidence            99999998632                         11111111        33455666677777777766654  468


Q ss_pred             EEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccccc-------CCCCCCCcce
Q psy2110         335 VVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNA-------GKDGDPEPIQ  407 (622)
Q Consensus       335 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~  407 (622)
                      +++++.|.++++||+..+.++.++... ..+.+++.+|-++.+.+|+.+|.|.+.++......       ........+.
T Consensus       191 l~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~  269 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN  269 (476)
T ss_pred             EEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence            999999999999999999988887654 77999999999999999999999999988754311       1112334556


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEe
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLW  485 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw  485 (622)
                      .+.++.+...+++++++-||..|++|+. ||.++|||+.+.++++++..-.+. |+.+.+.|-.+-+..+.  .-.+-.|
T Consensus       270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~-dg~VcvWdi~S~Q~iRtl~~~kgp-VtnL~i~~~~~~~~l~~~~~ps~~~~  347 (476)
T KOG0646|consen  270 VLVGHENESAITCLAISTDGTLLLSGDE-DGKVCVWDIYSKQCIRTLQTSKGP-VTNLQINPLERGIILFEHKQPSLPNP  347 (476)
T ss_pred             eeccccCCcceeEEEEecCccEEEeeCC-CCCEEEEecchHHHHHHHhhhccc-cceeEeeccccceecccccCccCCch
Confidence            6677777778999999999999999998 999999999999999988755554 99999987655443333  3445555


Q ss_pred             ec
Q psy2110         486 AQ  487 (622)
Q Consensus       486 ~~  487 (622)
                      ++
T Consensus       348 ~l  349 (476)
T KOG0646|consen  348 HL  349 (476)
T ss_pred             Hh
Confidence            54

>KOG1036|consensus

Probab=99.95  E-value=2.1e-25  Score=194.35  Aligned_cols=264  Identities=17%  Similarity=0.232  Sum_probs=213.9

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      |.++.|+|.+..|++++.||++++|+.........+...            .++.+++|.++ ..+++|+.||.|+.+|+
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~------------~plL~c~F~d~-~~~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG------------APLLDCAFADE-STIVTGGLDGQVRRYDL   82 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC------------CceeeeeccCC-ceEEEeccCceEEEEEe
Confidence            479999999999999999999999999987665555443            35899999985 46789999999999999


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .++... .+..|..+|.++.+++....+++|+.|++|++||.+.......+.....|.++....+   .+++|..+..+.
T Consensus        83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~---~LvVg~~~r~v~  158 (323)
T KOG1036|consen   83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGN---RLVVGTSDRKVL  158 (323)
T ss_pred             cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCC---EEEEeecCceEE
Confidence            887654 4667999999999999888999999999999999998777777777778888877643   688889999999


Q ss_pred             EEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc----cEEEEEecCC---------CCEEEE
Q psy2110         304 LVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELKASFKAST---------TAIKSI  368 (622)
Q Consensus       304 ~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~i~~~  368 (622)
                      +||+++.......  ..-...+.++++-|++.-+++++-+|.|.+=.+...    +....|+.|.         -+|++|
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            9999976543322  223456788999999999999999999988766654    4455666664         369999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      +|+|-...|++|+.||.|.+||+.         ..+.+..+...  ...+.+++|+.||..||.++.
T Consensus       239 ~Fhp~~~tfaTgGsDG~V~~Wd~~---------~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  239 AFHPIHGTFATGGSDGIVNIWDLF---------NRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeccccceEEecCCCceEEEccCc---------chhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            999999999999999999999998         33444444333  355678899999999999985

>KOG0294|consensus

Probab=99.95  E-value=2.5e-25  Score=194.17  Aligned_cols=275  Identities=18%  Similarity=0.251  Sum_probs=218.2

Q ss_pred             EEeecCCceEEEeechhhhhc-CCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe
Q psy2110          43 LLVNTGDRLIRVYNHQEVLNA-GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  121 (622)
Q Consensus        43 l~~~~~d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~  121 (622)
                      |++|+....|.-+++...... .....+..........+.+.+++++.  ++.|+|+|+.| -+|+|||+.+...+..+.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD-etI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD-ETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC-CcEEEEeccchhhhccee
Confidence            456666665555554322110 01111111222333345566777777  58999999987 799999999999999999


Q ss_pred             ccCcceeEEEEeecCccccccceeEEEEcCCCC--EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEE
Q psy2110         122 GTKGELLLDVVEFDGALDCISLAVTCAFNKRGT--LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVT  199 (622)
Q Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (622)
                      .|.+.+                 +++.|.++-.  .|++|+.||.|.+|+.....++..++.|..           .|+.
T Consensus        81 ~Hagsi-----------------taL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----------~Vt~  132 (362)
T KOG0294|consen   81 SHAGSI-----------------TALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----------QVTD  132 (362)
T ss_pred             ccccce-----------------EEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-----------ccce
Confidence            999988                 5999999875  899999999999999999999999998874           3899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC
Q psy2110         200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP  279 (622)
Q Consensus       200 ~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  279 (622)
                      ++++|.|++.++.+.|+.+++|++-+|+....+.-. ..-+.+.|+|.|.+++.++.+ .|-+|.+.+......+..+..
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r  210 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKR  210 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcccc
Confidence            999999999999999999999999988866555422 233459999999999888865 589999998887777777777


Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE--eeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF--DRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      +.++.|...+  .+++|..+..+.+||.....+...+..|...|..+.+  .|++.+|++++.||.|++||++..
T Consensus       211 ~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  211 ILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            7777776544  6889999999999999999999999999999988874  457889999999999999999865

>KOG1274|consensus

Probab=99.95  E-value=8.9e-25  Score=216.72  Aligned_cols=272  Identities=19%  Similarity=0.306  Sum_probs=223.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  274 (622)
                      .+.++|.|+|++|++++.||.|++|+.... +....+..+...|.+++.  ++.+|++++.+++|.+|.+.+++.-..+ 
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~   93 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA   93 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceee
Confidence            578999999999999999999999997765 444444447777887776  4558999999999999999988876444 


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      ++.-+++.++++.+|. +++.|+.|-.|++.++........+.+|...|.++.|+|++.+||+.+.||.|++|++.++.+
T Consensus        94 Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             eeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence            4778899999999887 688899999999999999999999999999999999999999999999999999999999887


Q ss_pred             EEEEecC--------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCC
Q psy2110         355 KASFKAS--------TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD  426 (622)
Q Consensus       355 ~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  426 (622)
                      ..++.+-        ...+..++|+|+|..|++.+.|+.|.+|+..         .......+.....+..+..+.|||+
T Consensus       173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~---------~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK---------GWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC---------CceeheeecccccccceEEEEEcCC
Confidence            7666521        3457789999999999999999999999988         3445555655555555888999999


Q ss_pred             CCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         427 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      |+|||+++. +|.|.|||.++-+.    +... ..|++++|.|+...|-... -|+..+|-
T Consensus       244 G~YiAAs~~-~g~I~vWnv~t~~~----~~~~-~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  244 GKYIAASTL-DGQILVWNVDTHER----HEFK-RAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             CcEEeeecc-CCcEEEEecccchh----cccc-ceeEEEecCCCCCeeEEEeeccccccCh
Confidence            999999998 99999999987222    2222 3499999999998665544 56555553

>KOG0646|consensus

Probab=99.95  E-value=1e-25  Score=206.91  Aligned_cols=254  Identities=19%  Similarity=0.298  Sum_probs=213.3

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                      +.|++++......|.+|.+.........---.+                 .|.+++-+|+|.+|+.|+..|.|++|.+.+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg-----------------~v~al~s~n~G~~l~ag~i~g~lYlWelss  112 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG-----------------PVHALASSNLGYFLLAGTISGNLYLWELSS  112 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhccccc-----------------ceeeeecCCCceEEEeecccCcEEEEEecc
Confidence            367777765557899999865444331111222                 246999999999999998999999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC---------CCceEEEeccCCcCeeEEE
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL---------TRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~  243 (622)
                      |.++..+..|+.           .|+|+.|+.||.+|++|+.||.|.+|.+.         +-++.+.+..|.-+|+.+.
T Consensus       113 G~LL~v~~aHYQ-----------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~  181 (476)
T KOG0646|consen  113 GILLNVLSAHYQ-----------SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ  181 (476)
T ss_pred             ccHHHHHHhhcc-----------ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence            999999998885           49999999999999999999999999863         2356788899999999999


Q ss_pred             EcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-----------
Q psy2110         244 WSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-----------  310 (622)
Q Consensus       244 ~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------  310 (622)
                      ..+.  ..+|++++.|.++++||+..+..+..+.++..+.+++..|.+. .+++|+.+|.|.+.++...           
T Consensus       182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccc
Confidence            8764  3589999999999999999999999999999999999999776 6888999999998877432           


Q ss_pred             -----ceeecccCCCC--ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC
Q psy2110         311 -----HQIVPIDEDSD--LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       311 -----~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  375 (622)
                           ..+..+.+|..  .|+|++++-||..|++|+.||.++|||+.+.++++++....++|+.+.+.|--+
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence                 23344566776  999999999999999999999999999999999999887789999999866433

>KOG0300|consensus

Probab=99.95  E-value=1.4e-25  Score=195.67  Aligned_cols=303  Identities=14%  Similarity=0.247  Sum_probs=240.0

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                      .|++.-.+++++.      +..+.+.+|..           .|..++.......+.+++.|.+.+||.++++.++.++.+
T Consensus       126 rivssFk~~t~~~------~lvre~~GHkD-----------GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G  188 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF------RLVRELEGHKD-----------GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG  188 (481)
T ss_pred             hheeeecCCceeE------eehhhhccccc-----------ceeeehhhcCCcceeecccccceeEEeeccccceeeecc
Confidence            4566666666432      24455556653           477777776667889999999999999999999999999


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC------CC------------------------------C----cEEEEE
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDV------LT------------------------------G----ECEQKY  274 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~------~~------------------------------~----~~~~~~  274 (622)
                      |.+.|+++.|++.+.++++++.|++..||..      ..                              +    .++..+
T Consensus       189 H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l  268 (481)
T KOG0300|consen  189 HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL  268 (481)
T ss_pred             cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee
Confidence            9999999999999999999999999999972      11                              0    011222


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc-
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL-  352 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  352 (622)
                      . |.+.|.+..|...++ .+++++.|.+..+||+.++..+..+.+|....+.++-+|..+++++.+.|.+.++||++.. 
T Consensus       269 tgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  269 TGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             eccccceEehhhhcCcc-eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc
Confidence            2 556777778877666 5889999999999999999999999999999999999999999999999999999999843 


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ..+..|++|...|+++.|..+.+ +++++.|.+|++||+++        -..++..+.   ...+++.++.+..+..||.
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN--------MRsplATIR---tdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN--------MRSPLATIR---TDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecc--------ccCcceeee---cCCccceeEeecCCceEEe
Confidence            46778999999999999998766 89999999999999984        223333333   3455667788877777776


Q ss_pred             eeCCCCeEEEEECCCCeeEEEE-----ecCCCCceeEEEECCCCC--EEEEEe-CCcEEEeecCCc
Q psy2110         433 GSARQHALYIWEKSVGNLVKIL-----HGTKGELLLDVVWHPVRP--IIASIS-SGVVSLWAQNQV  490 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~v~~sp~~~--~l~s~~-dg~v~iw~~~~~  490 (622)
                      -- ++..|++||+. |..+..+     ++|... |+|++|..+.+  -|++|+ |..+.=|.++.+
T Consensus       416 Ph-DNRqvRlfDln-G~RlaRlPrtsRqgHrRM-V~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  416 PH-DNRQVRLFDLN-GNRLARLPRTSRQGHRRM-VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cc-CCceEEEEecC-CCccccCCccccccccee-eeeeeccccCcccccccccccceeeeeEeccc
Confidence            66 48899999987 4444444     467665 99999987655  578888 999999998643

>KOG0301|consensus

Probab=99.95  E-value=2.9e-25  Score=213.35  Aligned_cols=281  Identities=17%  Similarity=0.258  Sum_probs=226.1

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      +..+.+.+|...+                 ..+++.+. ..++++|+||++++|+-..++.........+.         
T Consensus         5 ~ls~~l~gH~~DV-----------------r~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---------   57 (745)
T KOG0301|consen    5 KLSHELEGHKSDV-----------------RAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---------   57 (745)
T ss_pred             eeEEEeccCccch-----------------heeEecCC-eEEeecCCCCceeeeeccCcccccceecccCc---------
Confidence            5567889999888                 46666654 47999999999999997665544422221111         


Q ss_pred             cceEE-EEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         195 SLAVT-CAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       195 ~~v~~-~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      ..|.. ++|-+ ++-.|++|+.|.+|.+|...+..+...+++|...|++++...++. +++||.|.++++|-.  +++..
T Consensus        58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~  134 (745)
T KOG0301|consen   58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVY  134 (745)
T ss_pred             ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhc
Confidence            22333 55654 555689999999999999999999999999999999999888887 999999999999965  45555


Q ss_pred             EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         273 KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       273 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .+. |...|.++...|.+  .+++|+.|..|++|.-  +..+..+.+|.+.|..+++-+++ .+++++.||.|++|++ +
T Consensus       135 ~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~  208 (745)
T KOG0301|consen  135 SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-D  208 (745)
T ss_pred             ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-c
Confidence            555 89999999999987  6899999999999986  67788899999999999998765 5677889999999998 7


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      ++++..+.+|..-|.++...+++..+++++.|++++||+..           .+.+.+..+  ...+.++++-++|+.+ 
T Consensus       209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----------e~~q~I~lP--ttsiWsa~~L~NgDIv-  274 (745)
T KOG0301|consen  209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----------ECVQVITLP--TTSIWSAKVLLNGDIV-  274 (745)
T ss_pred             CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----------ceEEEEecC--ccceEEEEEeeCCCEE-
Confidence            99999999999999999988889999999999999999976           344444432  2334566666777765 


Q ss_pred             EeeCCCCeEEEEECC
Q psy2110         432 AGSARQHALYIWEKS  446 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~  446 (622)
                      +|++ ||.||||...
T Consensus       275 vg~S-DG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGS-DGRVRVFTVD  288 (745)
T ss_pred             Eecc-CceEEEEEec
Confidence            5554 9999999865

>KOG4283|consensus

Probab=99.94  E-value=9e-25  Score=188.74  Aligned_cols=284  Identities=14%  Similarity=0.174  Sum_probs=222.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCc------e----EE-----EeccCCcCeeEEEEcC-CCCEEEEEeCCC
Q psy2110         196 LAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRG------I----AK-----IISAHMHPVCSISWSR-NGYKIISASTDN  258 (622)
Q Consensus       196 ~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~------~----~~-----~~~~~~~~v~~~~~s~-~~~~l~s~~~d~  258 (622)
                      .|.++.+.+ .|+++++|+.||.|.+||+++..      .    ..     .-.+|.-.|.++.|-| |...|.+++.|.
T Consensus        45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh  124 (397)
T KOG4283|consen   45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH  124 (397)
T ss_pred             ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence            467777776 58899999999999999997532      0    01     1136788999999999 667889999999


Q ss_pred             cEEEEECCCCcEEEEEeCCCCeEEEEEeCCC--CeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCE-E
Q psy2110         259 NVCIWDVLTGECEQKYRFPSPILKVQFHPRN--DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQH-V  335 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l  335 (622)
                      ++++||.++.+....|.+++.|++-+++|-.  ..+++++..+-.|++-|+.++.....+.+|.+.|.++.|+|...+ |
T Consensus       125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence            9999999999999999999999999999854  356777888889999999999999999999999999999998876 5


Q ss_pred             EEEecCCeEEEEeCCCc-cEEEEE--------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCC
Q psy2110         336 VTGNSKGKVLVLSCPAL-ELKASF--------------KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD  400 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~-~~~~~~--------------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  400 (622)
                      ++|+.||.|++||++.. .+...+              ..|.+.+++++|+.++.++++++.|..+++|+..........
T Consensus       205 atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~  284 (397)
T KOG4283|consen  205 ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE  284 (397)
T ss_pred             EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc
Confidence            78999999999999754 233322              256788999999999999999999999999999853222110


Q ss_pred             CCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-C
Q psy2110         401 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-S  479 (622)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-d  479 (622)
                      .    .........+..+. +. +.+...++.--. ++.+.++++-.|..++.+.+|... |.+.++-|+-+...++. |
T Consensus       285 ~----g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~-~~~lall~~~sgs~ir~l~~h~k~-i~c~~~~~~fq~~~tg~~d  356 (397)
T KOG4283|consen  285 F----GPIIHNQTTSFAVH-IQ-SMDSDVFVLFPN-DGSLALLNLLEGSFVRRLSTHLKR-INCAAYRPDFEQCFTGDMN  356 (397)
T ss_pred             c----ccccccccccceEE-Ee-ecccceEEEEec-CCeEEEEEccCceEEEeeecccce-eeEEeecCchhhhhccccC
Confidence            0    00000000111111 12 233333333333 688999999999999999999554 99999999999999999 9


Q ss_pred             CcEEEeec
Q psy2110         480 GVVSLWAQ  487 (622)
Q Consensus       480 g~v~iw~~  487 (622)
                      +.+..|.+
T Consensus       357 ~ni~~w~p  364 (397)
T KOG4283|consen  357 GNIYMWSP  364 (397)
T ss_pred             Cccccccc
Confidence            99999987

>KOG1036|consensus

Probab=99.94  E-value=2.3e-24  Score=187.92  Aligned_cols=274  Identities=15%  Similarity=0.163  Sum_probs=217.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ..|+.+.|+|.++.|++++.||.+++|++........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++...+.-
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ig   91 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIG   91 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeec
Confidence            46899999999999999999999999999887555545 4889999999986 457999999999999999999999888


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      .|..++.++.+++.. ..+++++.|+.|++||.+.......+.... .|.++  +-.|..|++|+.+..+.+||+++...
T Consensus        92 th~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             cCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCc-eEEEE--eccCCEEEEeecCceEEEEEcccccc
Confidence            999999999999744 479999999999999999865555554433 55544  45688999999999999999998765


Q ss_pred             EEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee----ccccceeeeeEEEcCCCC
Q psy2110         355 KASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ----DLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       355 ~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~  428 (622)
                      ..+.+  .-.-.++++++-|++.-+++++-||.|.+=.++......  ......+...    +..-..++++++|+|--.
T Consensus       168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--hhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            44322  334568999999988889999999998886665320000  0001111111    111224678999999999


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      .+|+|+. ||.|.+||+.+.+.+..+..-... |..++|+.+|..||.++
T Consensus       246 tfaTgGs-DG~V~~Wd~~~rKrl~q~~~~~~S-I~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  246 TFATGGS-DGIVNIWDLFNRKRLKQLAKYETS-ISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eEEecCC-CceEEEccCcchhhhhhccCCCCc-eEEEEeccCCCeEEEEe
Confidence            9999998 999999999999999999887666 99999999999999886

>KOG2055|consensus

Probab=99.94  E-value=7.4e-25  Score=200.79  Aligned_cols=286  Identities=12%  Similarity=0.204  Sum_probs=235.2

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-E
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-L  155 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~  155 (622)
                      ..++.++++.|+|....|++++.+ ++++||.++  +...++.+.-...++                 .+.+|.|+|. .
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi-----------------~~a~f~p~G~~~  272 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPI-----------------QKAEFAPNGHSV  272 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCcc-----------------ceeeecCCCceE
Confidence            456778899999999999999986 999999885  344555555555555                 5999999999 9


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      +++++....++.||+.+.+..+.-.....+.        ..+.....++++++|+..+..|.|.+....+++.+..++- 
T Consensus       273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~--------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-  343 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEE--------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-  343 (514)
T ss_pred             EEecccceEEEEeeccccccccccCCCCccc--------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-
Confidence            9999999999999999876544322221110        1356778899999999999999999999999999888874 


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE--EEEEeCCCCeEEEEeeCCCcEEEEEecC----
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPIL--KVQFHPRNDHMFLVCPMRHAAVLVDTDG----  309 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~----  309 (622)
                      .+.|..++|+.|++.|++++.+|.|.+||++...+++.+...+.+.  +++.++++. ++++|+..|.|.|||..+    
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhcc
Confidence            5789999999999999999999999999999999999998666654  566678877 799999999999999653    


Q ss_pred             --CceeecccCCCCceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEEecC---CCCEEEEEEcCCCCEEEEEeC
Q psy2110         310 --DHQIVPIDEDSDLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASFKAS---TTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       310 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~  382 (622)
                        ++++..+..-...|+.+.|+++++.|+.++.  +..+++-.+.+......+...   -+.|+|++|+|.+.+||+|..
T Consensus       423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence              4666777777788999999999999988764  567888888877766655533   356899999999999999999


Q ss_pred             CCcEEEEecc
Q psy2110         383 DRLIRVYNHQ  392 (622)
Q Consensus       383 d~~i~i~d~~  392 (622)
                      +|.+.+|.+.
T Consensus       503 ~grv~l~kL~  512 (514)
T KOG2055|consen  503 AGRVHLFKLH  512 (514)
T ss_pred             CCceeeEeec
Confidence            9999999875

>KOG0639|consensus

Probab=99.94  E-value=1.4e-25  Score=207.32  Aligned_cols=261  Identities=16%  Similarity=0.224  Sum_probs=218.4

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEecccc--------------------ceecccCceEEeecCCceEEEeechhhhh
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPAL--------------------ELKASRGNCLLVNTGDRLIRVYNHQEVLN   62 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~--------------------~~~~~~~~~l~~~~~d~~i~~w~~~~~~~   62 (622)
                      .|-++++|...+++.||++ |-|+|||+...                    ....++|+.|++|+.-.++.|||+...- 
T Consensus       421 vVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-  498 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-  498 (705)
T ss_pred             EEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC-
Confidence            4778899999999999987 89999998653                    1126689999999999999999997421 


Q ss_pred             cCCCCCCccchhhhh-hcc-ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcccc
Q psy2110          63 AGKDGDPEPIQKLQD-LVN-KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDC  140 (622)
Q Consensus        63 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  140 (622)
                                ..+.. +.. .-..++++.|||.+...++..| |.|.|||+.+...++.|+||.+.+             
T Consensus       499 ----------prikaeltssapaCyALa~spDakvcFsccsd-GnI~vwDLhnq~~VrqfqGhtDGa-------------  554 (705)
T KOG0639|consen  499 ----------PRIKAELTSSAPACYALAISPDAKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTDGA-------------  554 (705)
T ss_pred             ----------cchhhhcCCcchhhhhhhcCCccceeeeeccC-CcEEEEEcccceeeecccCCCCCc-------------
Confidence                      11111 111 1234578999999998888875 999999999999999999999988             


Q ss_pred             ccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEE
Q psy2110         141 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  220 (622)
Q Consensus       141 ~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  220 (622)
                          .|+..++||..|-||+-|.+||-||+.+++.+......            +.|.++.+.|++.+|++|-.++.+.+
T Consensus       555 ----scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~------------SQIfSLg~cP~~dWlavGMens~vev  618 (705)
T KOG0639|consen  555 ----SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS------------SQIFSLGYCPTGDWLAVGMENSNVEV  618 (705)
T ss_pred             ----eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh------------hhheecccCCCccceeeecccCcEEE
Confidence                49999999999999999999999999998766544332            46899999999999999999998888


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      ... ++.....+..|...|.++.|.+.|+++++.+.|+.+..|.+.-|..+....-.++|.++.++.+++ ++++|+.+.
T Consensus       619 lh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddk-yIVTGSGdk  696 (705)
T KOG0639|consen  619 LHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDK-YIVTGSGDK  696 (705)
T ss_pred             Eec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCce-EEEecCCCc
Confidence            875 444556778899999999999999999999999999999999998888888889999999999876 688888888


Q ss_pred             cEEEEEe
Q psy2110         301 AAVLVDT  307 (622)
Q Consensus       301 ~i~~~d~  307 (622)
                      ...+|.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            7777754

>KOG0300|consensus

Probab=99.94  E-value=4.6e-25  Score=192.41  Aligned_cols=289  Identities=13%  Similarity=0.198  Sum_probs=227.0

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +-.++.......+.+++.| .+.+||.+++|.++..+.||.+.|+                 +++|++.+.++++++.|+
T Consensus       151 iW~Vaa~~tqpi~gtASAD-hTA~iWs~Esg~CL~~Y~GH~GSVN-----------------sikfh~s~~L~lTaSGD~  212 (481)
T KOG0300|consen  151 IWHVAADSTQPICGTASAD-HTARIWSLESGACLATYTGHTGSVN-----------------SIKFHNSGLLLLTASGDE  212 (481)
T ss_pred             eeeehhhcCCcceeecccc-cceeEEeeccccceeeeccccccee-----------------eEEeccccceEEEccCCc
Confidence            3345555555677778875 8999999999999999999999995                 999999999999999999


Q ss_pred             cEEEEecC------Cccccccc------ccc--cCCCccc---------------ccccccceEEEEECCCCCEEEEEeC
Q psy2110         164 RIVLWDFL------TRGIAKII------SAH--MHPEFDG---------------ALDCISLAVTCAFNKRGTLLAVGCN  214 (622)
Q Consensus       164 ~i~vw~~~------~~~~~~~~------~~~--~~~~~~~---------------~~~~~~~v~~~~~s~~g~~l~~~~~  214 (622)
                      +..||...      ........      ..+  ..+...+               .......|.++.|-..|+.+++++.
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW  292 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW  292 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence            99999731      10000000      000  0000000               0012345778889999999999999


Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEe-CCCCeEEEEEeCCCCeE
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-ECEQKYR-FPSPILKVQFHPRNDHM  292 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~  292 (622)
                      |.+..+||++++..+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|. |...|+++.|..+.+  
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--  370 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--  370 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--
Confidence            999999999999999999999999999999999999999999999999999843 3345555 788999999998775  


Q ss_pred             EEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE----EEecCCCCEEEE
Q psy2110         293 FLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA----SFKASTTAIKSI  368 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~~  368 (622)
                      +++++.|.++++||+++.............+..++++..+..|+.-..+..|++||+....+.+    .-++|...|+|.
T Consensus       371 vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~  450 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC  450 (481)
T ss_pred             eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence            8999999999999999865444333345667788898888899999999999999997544322    335888999999


Q ss_pred             EEcCCC--CEEEEEeCCCcEEEEecc
Q psy2110         369 EFARRG--NCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       369 ~~s~~~--~~l~~~~~d~~i~i~d~~  392 (622)
                      +|..+.  .-|++++.|+.+.-|++.
T Consensus       451 AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  451 AWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eccccCcccccccccccceeeeeEec
Confidence            997543  358899999999999987

>KOG0650|consensus

Probab=99.94  E-value=5.6e-25  Score=207.70  Aligned_cols=296  Identities=16%  Similarity=0.284  Sum_probs=234.7

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                      +...++||.+.|                 +++...|.|.+|++|+.||+|+||.+.+|.++..+...            +
T Consensus       392 ~~lvyrGHtg~V-----------------r~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d------------~  442 (733)
T KOG0650|consen  392 CALVYRGHTGLV-----------------RSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD------------S  442 (733)
T ss_pred             eeeeEeccCCeE-----------------EEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec------------c
Confidence            445677888877                 69999999999999999999999999999999888765            3


Q ss_pred             ceEEEEECCCCC--EEEEEeCCC--------------------------------eEEEEEcCCCc----eEEEeccCCc
Q psy2110         196 LAVTCAFNKRGT--LLAVGCNDG--------------------------------RIVLWDFLTRG----IAKIISAHMH  237 (622)
Q Consensus       196 ~v~~~~~s~~g~--~l~~~~~dg--------------------------------~i~iwd~~~~~----~~~~~~~~~~  237 (622)
                      .|.|++|+|.+.  .||++-...                                .+..|.-....    -++..-.|..
T Consensus       443 ~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k  522 (733)
T KOG0650|consen  443 EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK  522 (733)
T ss_pred             eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC
Confidence            589999999775  344443222                                22233221100    1223345788


Q ss_pred             CeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         238 PVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      .|..+.|+..|.||++...+   ..|.|.++...+...-|+ ..+.+.++.|+|....++++.  ...+++||+.....+
T Consensus       523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV  600 (733)
T ss_pred             ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHH
Confidence            99999999999999998764   468999988777666664 667899999999988766654  567999999988888


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ..+......+..++++|.|..|+.|+.|+.+..||+.- .++.++++.|...+++++|++.-.+|++++.||++.||.-.
T Consensus       601 KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~  680 (733)
T KOG0650|consen  601 KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM  680 (733)
T ss_pred             HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence            88888888999999999999999999999999999874 46788899999999999999999999999999999998755


Q ss_pred             cccccCCCCCCCcceeeeccccc--eeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         393 EVLNAGKDGDPEPIQKLQDLVNK--TMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      -......+.-..+++.++++...  ..+..+.|+|..-+|++++. ||+|++|
T Consensus       681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA-d~tirlf  732 (733)
T KOG0650|consen  681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA-DGTIRLF  732 (733)
T ss_pred             eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC-CceEEee
Confidence            33333333334566777766544  55678899999999999998 9999998

>KOG0301|consensus

Probab=99.94  E-value=1.2e-24  Score=209.19  Aligned_cols=268  Identities=16%  Similarity=0.284  Sum_probs=228.6

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE--EEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEee
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGC  160 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~  160 (622)
                      +..+++.+ +..+++++- |+++++|+-..++.+  ..+.+|.+-+.                .++++.+ ++-.|++|+
T Consensus        17 Vr~v~~~~-~~~i~s~sR-d~t~~vw~~~~~~~l~~~~~~~~~g~i~----------------~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen   17 VRAVAVTD-GVCIISGSR-DGTVKVWAKKGKQYLETHAFEGPKGFIA----------------NSICYAESDKGRLVVGG   78 (745)
T ss_pred             hheeEecC-CeEEeecCC-CCceeeeeccCcccccceecccCcceee----------------ccceeccccCcceEeec
Confidence            33445443 447777774 599999998655544  34667777663                3366664 555799999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      .|++|.+|..........+.+|..           .|.+++...++. +++|+.|.++++|..  +++...+.+|...|+
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~s-----------nVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVW  144 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKS-----------NVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVW  144 (745)
T ss_pred             ccceEEEEecCCCCchhhhhcccc-----------ceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchhee
Confidence            999999999999999999999974           588888888887 899999999999975  556667999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED  319 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  319 (622)
                      +++.-|++ .+++|+.|.+|++|.-  ++.++++. |..-|+.+++-+++.  |++|+.||.|++|++ ++..+..+.+|
T Consensus       145 Av~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~gh  218 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGH  218 (745)
T ss_pred             eeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEec-cCceeeeeecc
Confidence            99999988 8999999999999964  77888887 888999999999875  899999999999999 77889999999


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ...++++....++..++++++|++++||+..  ++.+.+......|.++.+-++|. +++|++||.||||..+
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            9999999988999999999999999999966  78888888888999999998988 8899999999999877

>KOG1274|consensus

Probab=99.94  E-value=4.3e-24  Score=211.93  Aligned_cols=265  Identities=16%  Similarity=0.290  Sum_probs=212.0

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      .+..+.+.++|.|+|++|++++.+ |.|++|+.... +.-..+..+...+                 .+++.  ++.+|+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v-----------------~~ia~--~s~~f~   70 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELV-----------------SSIAC--YSNHFL   70 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCcee-----------------EEEee--cccceE
Confidence            344556789999999999999986 99999998655 3333333344444                 35544  456999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      +|+.+++|.+|.+.+++.-..+....           -++.+++|+.+|+++|.|+.|-.|++.++.+....+.+++|.+
T Consensus        71 ~~s~~~tv~~y~fps~~~~~iL~Rft-----------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   71 TGSEQNTVLRYKFPSGEEDTILARFT-----------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA  139 (933)
T ss_pred             EeeccceEEEeeCCCCCccceeeeee-----------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence            99999999999998876554443332           2478999999999999999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      +|.++.|+|.+.+||+.+.||.|++||+.++.+...+.         ....+..++|+|++.. +++...++.|.+|+..
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRK  218 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccC
Confidence            99999999999999999999999999999988776654         1345678999999876 4555678899999998


Q ss_pred             CCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         309 GDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       309 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      +......+.  .+...+..+.|+|+|+|||+++.+|.|.|||..+.+.    ......|.+++|.|+...+-.
T Consensus       219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEE
Confidence            876665544  3444588999999999999999999999999987222    333467899999998775443

>KOG1963|consensus

Probab=99.93  E-value=5.6e-23  Score=203.72  Aligned_cols=373  Identities=16%  Similarity=0.182  Sum_probs=249.1

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      .++.+++.|.+.+..-.  ..+.+|+..+..  +....+...+           .+.-.+++.++||+++++|+|..||.
T Consensus       164 ~~I~~~~~ge~~~i~~~--~~~~~~~v~~~~--~~~~~~~~~~-----------~Htf~~t~~~~spn~~~~Aa~d~dGr  228 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHM--CKIHIYFVPKHT--KHTSSRDITV-----------HHTFNITCVALSPNERYLAAGDSDGR  228 (792)
T ss_pred             ccEEEcCCceEEEEEEe--eeEEEEEecccc--eeeccchhhh-----------hhcccceeEEeccccceEEEeccCCc
Confidence            45777777777766653  578888887655  2222222211           11112479999999999999999999


Q ss_pred             EEEEecCC--cc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         165 IVLWDFLT--RG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       165 i~vw~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      |.+|.-..  +.  ....+.-|.           ..|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-+..-.++|.
T Consensus       229 I~vw~d~~~~~~~~t~t~lHWH~-----------~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~  296 (792)
T KOG1963|consen  229 ILVWRDFGSSDDSETCTLLHWHH-----------DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPIL  296 (792)
T ss_pred             EEEEeccccccccccceEEEecc-----------cccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeE
Confidence            99996433  21  222233332           358999999999999999999999999999988 556677788999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC------------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF------------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      .+.+|||+.+.+....|++|.+....+......+.+            .+-.+.++++|..+ .++..+..+.+.+||+.
T Consensus       297 ~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  297 HIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             EEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEecc
Confidence            999999999999999999999998866554444431            23356778888433 57778899999999998


Q ss_pred             CCceeecccC-----C------CCceEEEEEeeCCCEEEEEe--------cC--CeEEEEeCCCcc----EEEEE-ecCC
Q psy2110         309 GDHQIVPIDE-----D------SDLSIVASFDRRGQHVVTGN--------SK--GKVLVLSCPALE----LKASF-KAST  362 (622)
Q Consensus       309 ~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~~~--------~d--g~i~i~d~~~~~----~~~~~-~~~~  362 (622)
                      +...+..+..     +      ...++.++.+..|.++++.-        .+  -.+++|......    +...+ ..|.
T Consensus       376 td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~  455 (792)
T KOG1963|consen  376 TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG  455 (792)
T ss_pred             ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence            8766544321     1      22355677777898988853        22  357888754332    33333 3676


Q ss_pred             CCEEEEEEcC-CCC-EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         363 TAIKSIEFAR-RGN-CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       363 ~~i~~~~~s~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                      ..+...++.+ ... .+++++.||.+++|-+......... ...-.....+.....++.+++||.||..|+++.  ++.|
T Consensus       456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~-~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~--~~~I  532 (792)
T KOG1963|consen  456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK-SSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF--DDTI  532 (792)
T ss_pred             ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC-ccceEEeeeeccccCcccchhhcCCCcEEEEec--CCEE
Confidence            6666666643 223 7899999999999998543222211 112223333444567788899999998888776  6799


Q ss_pred             EEEECCCCeeEEEEecCCCCceeEEEECCCCC---EEEEEeCCcEEEeecC
Q psy2110         441 YIWEKSVGNLVKILHGTKGELLLDVVWHPVRP---IIASISSGVVSLWAQN  488 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~---~l~s~~dg~v~iw~~~  488 (622)
                      .+||..+...+....+..+.++..+.+.....   .+..+..+.+.+|++-
T Consensus       533 tiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll  583 (792)
T KOG1963|consen  533 TIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLL  583 (792)
T ss_pred             EEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhh
Confidence            99999874333333333332233343433222   2223336788889875

>KOG1273|consensus

Probab=99.93  E-value=5.3e-24  Score=185.80  Aligned_cols=276  Identities=14%  Similarity=0.231  Sum_probs=215.0

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      ..||.||+.|.+||+|+.+ |.|.|||+.|...-+.+.+|..+|                 ++++||+||+.|+|+|.|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi-----------------~sl~WS~dgr~LltsS~D~   87 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPI-----------------TSLCWSRDGRKLLTSSRDW   87 (405)
T ss_pred             cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccce-----------------eEEEecCCCCEeeeecCCc
Confidence            5689999999999999986 999999999999999999999988                 6999999999999999999


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEecc-C----Cc
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISA-H----MH  237 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-~----~~  237 (622)
                      .|.+||+..|.+++.+...            ++|..+.|+|..... ++.-.+..-.+.++..+.. ..+.. .    ..
T Consensus        88 si~lwDl~~gs~l~rirf~------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~  154 (405)
T KOG1273|consen   88 SIKLWDLLKGSPLKRIRFD------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNS  154 (405)
T ss_pred             eeEEEeccCCCceeEEEcc------------CccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCcccccc
Confidence            9999999999988877665            468999999965433 3333444455555554321 11211 1    11


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-----
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-----  310 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----  310 (622)
                      .-.+..|.+.|++|++|...|.+.++|..+-+++..++..  ..|..+.++..|+ .++..+.|..|+.|+++.-     
T Consensus       155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r  233 (405)
T KOG1273|consen  155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGR  233 (405)
T ss_pred             ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCc
Confidence            1223358889999999999999999999999999988833  6888999998887 5677788999999998621     


Q ss_pred             -cee---ecccC--CCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEEEEeC
Q psy2110         311 -HQI---VPIDE--DSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       311 -~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~  382 (622)
                       ..+   ..+..  ....=.+++|+.+|.+++.++. ...++||....|.+++.+.+.. .....+.|+|-...+++. .
T Consensus       234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~  312 (405)
T KOG1273|consen  234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-A  312 (405)
T ss_pred             cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-c
Confidence             111   11110  1112236789999999988764 4579999999999999999887 567889999998877776 6


Q ss_pred             CCcEEEEecc
Q psy2110         383 DRLIRVYNHQ  392 (622)
Q Consensus       383 d~~i~i~d~~  392 (622)
                      .|.+++|...
T Consensus       313 sg~v~iw~~~  322 (405)
T KOG1273|consen  313 SGVVYIWAVV  322 (405)
T ss_pred             CCceEEEEee
Confidence            7899999876

>KOG1332|consensus

Probab=99.93  E-value=2.9e-24  Score=180.85  Aligned_cols=241  Identities=14%  Similarity=0.272  Sum_probs=192.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceEEEeccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      |..+...--|+.||+++.|++|+|+..+..   +.+..|.+|.++|..++|..  .|..|++++.||.|.||.-.+++..
T Consensus        14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~   93 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT   93 (299)
T ss_pred             hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence            444555567899999999999999999864   45788999999999999976  8999999999999999998888655


Q ss_pred             EEEe---CCCCeEEEEEeCCCC-eEEEEeeCCCcEEEEEecCC---ceeecccCCCCceEEEEEeeC---C---------
Q psy2110         272 QKYR---FPSPILKVQFHPRND-HMFLVCPMRHAAVLVDTDGD---HQIVPIDEDSDLSIVASFDRR---G---------  332 (622)
Q Consensus       272 ~~~~---~~~~v~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~---~---------  332 (622)
                      +...   |...|++++|.|.+- .+|++++.||.|.+++.+..   ........|.-.+.+++|.|.   |         
T Consensus        94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~  173 (299)
T KOG1332|consen   94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA  173 (299)
T ss_pred             hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence            5444   788999999999764 45667789999999998765   233445678888999999886   4         


Q ss_pred             --CEEEEEecCCeEEEEeCCCcc--EEEEEecCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110         333 --QHVVTGNSKGKVLVLSCPALE--LKASFKASTTAIKSIEFARRG----NCLLVNTGDRLIRVYNHQEVLNAGKDGDPE  404 (622)
Q Consensus       333 --~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  404 (622)
                        +.|++|+.|..|+||+..+++  .-+++.+|...|+.++|.|.-    .+|++++.||++.||..+...   ......
T Consensus       174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~---e~wk~t  250 (299)
T KOG1332|consen  174 KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY---EPWKKT  250 (299)
T ss_pred             ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc---Cccccc
Confidence              579999999999999988754  445689999999999999964    479999999999999877310   011122


Q ss_pred             cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      .+..+     ...+.++.||+.|+.|+.++. |+.+.+|.-.
T Consensus       251 ll~~f-----~~~~w~vSWS~sGn~LaVs~G-dNkvtlwke~  286 (299)
T KOG1332|consen  251 LLEEF-----PDVVWRVSWSLSGNILAVSGG-DNKVTLWKEN  286 (299)
T ss_pred             ccccC-----CcceEEEEEeccccEEEEecC-CcEEEEEEeC
Confidence            22222     234567899999999999987 8899999743

>KOG0264|consensus

Probab=99.93  E-value=3.3e-24  Score=196.72  Aligned_cols=249  Identities=16%  Similarity=0.297  Sum_probs=197.6

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCc----------eEEEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEE
Q psy2110         196 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRG----------IAKIISAHMHPVCSISWSRN-GYKIISASTDNNVCIW  263 (622)
Q Consensus       196 ~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iw  263 (622)
                      .|..+.+-|+.. .+|+.+..+.++|||..+..          +-..+.+|...-++++|++. .-+|++++.|++|++|
T Consensus       126 EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw  205 (422)
T KOG0264|consen  126 EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW  205 (422)
T ss_pred             cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEE
Confidence            466677777654 66677888999999986422          12378899988899999984 3479999999999999


Q ss_pred             ECCCCcE-------EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec--CCceeecccCCCCceEEEEEeeC-C
Q psy2110         264 DVLTGEC-------EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD--GDHQIVPIDEDSDLSIVASFDRR-G  332 (622)
Q Consensus       264 d~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~-~  332 (622)
                      |+.....       ...+. |...|..++|++....+|.+++.|+.+.|||+|  +.+.......|...+.+++|+|- +
T Consensus       206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~  285 (422)
T KOG0264|consen  206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE  285 (422)
T ss_pred             eccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC
Confidence            9975432       23333 788999999999999999999999999999999  56677788889999999999995 4


Q ss_pred             CEEEEEecCCeEEEEeCCCcc-EEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccC-----CCCCCCc
Q psy2110         333 QHVVTGNSKGKVLVLSCPALE-LKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAG-----KDGDPEP  405 (622)
Q Consensus       333 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~  405 (622)
                      ..||+|+.|++|.+||+++.. ++.++.+|...|.++.|+|.. ..||+++.|+.+.+||+...-...     ..+.++.
T Consensus       286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl  365 (422)
T KOG0264|consen  286 FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL  365 (422)
T ss_pred             ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcce
Confidence            667889999999999999764 788999999999999999975 567888899999999998543321     2233333


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      +....+|.  ..+..+.|+|+..++++...+|+.++||.+.
T Consensus       366 lF~HgGH~--~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  366 LFIHGGHT--AKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eEEecCcc--cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            33333332  4467889999999888777779999999975

>KOG0321|consensus

Probab=99.93  E-value=5e-24  Score=202.97  Aligned_cols=281  Identities=20%  Similarity=0.288  Sum_probs=217.4

Q ss_pred             EEEECC---CCCEEEEEeCCCeEEEEEcCCCce------EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         199 TCAFNK---RGTLLAVGCNDGRIVLWDFLTRGI------AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       199 ~~~~s~---~g~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      +..|++   ....|+.+..+|.|.++|......      +.....|.+.|..+.|.|....|++++.|.++++||+++++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            345554   345789999999999999765432      24556899999999999977789999999999999999998


Q ss_pred             EEEE---EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce---------------------------eecccCC
Q psy2110         270 CEQK---YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ---------------------------IVPIDED  319 (622)
Q Consensus       270 ~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------------------~~~~~~~  319 (622)
                      +...   +.|...+.+++|.|.+..+|++|+.|+.+.|||++-...                           +.....+
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            8765   448899999999999999999999999999999974320                           0111123


Q ss_pred             CCceEE---EEEeeCCCEEEEEec-CCeEEEEeCCCccEEEEE--------ecC---CCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         320 SDLSIV---ASFDRRGQHVVTGNS-KGKVLVLSCPALELKASF--------KAS---TTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       320 ~~~~~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~---~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      ...+..   +.+..|...|++++. |+.|+|||++........        ..|   .-.+.++.....|.+|++.+.|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            333444   556678888988877 999999999875433221        222   33577888888899999999999


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe-eEEEEecCCCCcee
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-LVKILHGTKGELLL  463 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~  463 (622)
                      .|++|++...       ...++..+.+.........-..|||+.+|++|+. |...++|.+.+.+ ....+.||.-+ |+
T Consensus       294 sIy~ynm~s~-------s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~ayiw~vs~~e~~~~~l~Ght~e-Vt  364 (720)
T KOG0321|consen  294 SIYFYNMRSL-------SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-DEQAYIWVVSSPEAPPALLLGHTRE-VT  364 (720)
T ss_pred             cEEEEecccc-------CcCchhhccCcccceeeeeeecCCCCceEeccCC-CcceeeeeecCccCChhhhhCcceE-EE
Confidence            9999999842       3345566666666555566689999999999998 8899999998754 45667888877 99


Q ss_pred             EEEECCCCC-EEEEEe-CCcEEEeecC
Q psy2110         464 DVVWHPVRP-IIASIS-SGVVSLWAQN  488 (622)
Q Consensus       464 ~v~~sp~~~-~l~s~~-dg~v~iw~~~  488 (622)
                      +++|.|..- -+++++ |.+++||++.
T Consensus       365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  365 TVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             EEeeccccCCCceeeccCcceEEEecc
Confidence            999988643 456667 9999999995

>KOG1963|consensus

Probab=99.93  E-value=2.4e-22  Score=199.27  Aligned_cols=375  Identities=17%  Similarity=0.243  Sum_probs=269.1

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC---CEEEEeeCCC
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG---TLLAVGCNDG  163 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~s~~~dg  163 (622)
                      ..||+|+++++....  ..|.||...||.++..+.+|..++.                 .+.+.|..   .++++++.+|
T Consensus        22 avfSnD~k~l~~~~~--~~V~VyS~~Tg~~i~~l~~~~a~l~-----------------s~~~~~~~~~~~~~~~~sl~G   82 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTG--NFVKVYSTATGECITSLEDHTAPLT-----------------SVIVLPSSENANYLIVCSLDG   82 (792)
T ss_pred             cccccCCcEEEEeeC--CEEEEEecchHhhhhhcccccCccc-----------------eeeecCCCccceEEEEEecCc
Confidence            589999999998884  6999999999999999999999984                 77777654   4778999999


Q ss_pred             cEEEEecCCcccccccccccCCCc--------------------------------------------------------
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEF--------------------------------------------------------  187 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  187 (622)
                      .|++||...+.+++.+..+.+...                                                        
T Consensus        83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~  162 (792)
T KOG1963|consen   83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE  162 (792)
T ss_pred             cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC
Confidence            999999988776655533321100                                                        


Q ss_pred             ------------------------------------ccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC----Cc
Q psy2110         188 ------------------------------------DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT----RG  227 (622)
Q Consensus       188 ------------------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~----~~  227 (622)
                                                          .....+...+++.++||+++++|+|..||.|.+|.--.    ..
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence                                                00000122357899999999999999999999996332    12


Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT  307 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~  307 (622)
                      ..+.+.-|...|++++|+++|.+|++|+..+.+.+|.+.+++....-+..++|..+.++||+.. ......|+.|.+...
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHLIKA  321 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCe-EEEEecCceEEEEec
Confidence            3466778999999999999999999999999999999999995555568899999999999985 445556888888876


Q ss_pred             cCCceeeccc-----------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-----cC------CCCE
Q psy2110         308 DGDHQIVPID-----------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----AS------TTAI  365 (622)
Q Consensus       308 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~------~~~i  365 (622)
                      .+......+.           ......+.++++|.-+.++..+..|.|.+||+-+.+.+..++     .+      .-.+
T Consensus       322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~i  401 (792)
T KOG1963|consen  322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGI  401 (792)
T ss_pred             cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEee
Confidence            5433222221           124556788999977788888899999999998877666554     11      2246


Q ss_pred             EEEEEcCCCCEEEEEe--------CCC--cEEEEecccccccCCCCCCCcceeeeccccceeeeeEE-EcCCCC-eEEEe
Q psy2110         366 KSIEFARRGNCLLVNT--------GDR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC-FSGDGE-YVCAG  433 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~--------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~-~l~~~  433 (622)
                      +.++.+..|.++++.-        .||  .+++|.......     .......+ ...+...+...+ +++... ..+++
T Consensus       402 tav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k-----t~~L~T~I-~~PH~~~~vat~~~~~~rs~~~vta  475 (792)
T KOG1963|consen  402 TAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK-----TFILNTKI-NNPHGNAFVATIFLNPTRSVRCVTA  475 (792)
T ss_pred             eeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc-----eeEEEEEE-ecCCCceeEEEEEecCcccceeEEe
Confidence            7788888899998864        233  478887763110     11111222 222333333333 344333 67777


Q ss_pred             eCCCCeEEEEECCCC----------eeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecCC
Q psy2110         434 SARQHALYIWEKSVG----------NLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      +. ||.++||-+..-          .+...-.-|.. +++.++|+.||.+|+.+.|++|.+||...
T Consensus       476 ~~-dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~-~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  476 SV-DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT-PITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cc-CCeEEEEEEecccccCcCccceEEeeeeccccC-cccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            76 999999987321          12222122444 49999999999888887799999999875

>KOG4328|consensus

Probab=99.92  E-value=1.3e-23  Score=192.60  Aligned_cols=286  Identities=19%  Similarity=0.246  Sum_probs=220.5

Q ss_pred             cceEEEEECCCC--CEEEEEeCCCeEEEEEcCCC----ceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q psy2110         195 SLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       195 ~~v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      ..|++++|+|..  +++|+|...|+|-+||+.+.    .-+..+..|..+|.++.|+| +...+++.+.||+|++-|++.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~  266 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG  266 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence            358999999965  48889999999999999532    23566788999999999999 556899999999999999987


Q ss_pred             CcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-eecccCCCCceEEEEEeeCC-CEEEEEecCC
Q psy2110         268 GECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-IVPIDEDSDLSIVASFDRRG-QHVVTGNSKG  342 (622)
Q Consensus       268 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg  342 (622)
                      +.....+.   ....+..+.|+.+...+++.... |.+.+||++.+.. ...+..|...|..++++|.. .++++++.|+
T Consensus       267 ~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  267 NISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             hhhHHHhhcCccceeeeeccccCCCccEEEeecc-cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence            75433333   23456677888777755554444 4899999998754 77778888899999999965 6788999999


Q ss_pred             eEEEEeCCCccE----EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc---
Q psy2110         343 KVLVLSCPALEL----KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK---  415 (622)
Q Consensus       343 ~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---  415 (622)
                      +.+|||++....    +.....|...|.+..|||.+-.|++.+.|..|+|||..-..     ....+...+......   
T Consensus       346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s-----a~~~p~~~I~Hn~~t~Rw  420 (498)
T KOG4328|consen  346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS-----AKDEPLGTIPHNNRTGRW  420 (498)
T ss_pred             ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc-----ccCCccceeeccCccccc
Confidence            999999986443    33445789999999999998889999999999999985110     122333333332222   


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE-EECCCCCEEEEEe--CCcEEEeec
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV-VWHPVRPIIASIS--SGVVSLWAQ  487 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~s~~--dg~v~iw~~  487 (622)
                      .......|.|+..+|++|.. -..|-|+|-..++.+..+.++....|.++ .|||-+..+++|+  .|.|+||.-
T Consensus       421 lT~fKA~W~P~~~li~vg~~-~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  421 LTPFKAAWDPDYNLIVVGRY-PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccchhheeCCCccEEEEecc-CcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            22235699999999999987 66799999999998999888776446655 8999999666666  789998864

>KOG0264|consensus

Probab=99.92  E-value=8e-24  Score=194.22  Aligned_cols=253  Identities=15%  Similarity=0.260  Sum_probs=201.2

Q ss_pred             ccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc----------eEEEEeccCcceeEEEEeecCccc
Q psy2110          70 EPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN----------LVKILHGTKGELLLDVVEFDGALD  139 (622)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~  139 (622)
                      ..++....+.+.+.|+.+.+-|....|+++....+.|+|||..+-.          +-.++.+|.++-            
T Consensus       113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg------------  180 (422)
T KOG0264|consen  113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG------------  180 (422)
T ss_pred             cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccc------------
Confidence            3455556677788888899999888777765556899999985321          223778888754            


Q ss_pred             cccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccc-------cccccccCCCcccccccccceEEEEECCCC-CEEE
Q psy2110         140 CISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIA-------KIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLA  210 (622)
Q Consensus       140 ~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~  210 (622)
                           .+++|++... .|++++.|++|.+||+......       ..+..|.           +.|..++|++-. .+++
T Consensus       181 -----~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----------~~VeDV~~h~~h~~lF~  244 (422)
T KOG0264|consen  181 -----YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----------DVVEDVAWHPLHEDLFG  244 (422)
T ss_pred             -----cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----------cceehhhccccchhhhe
Confidence                 4899999755 8999999999999999865432       1222222           458889999854 5778


Q ss_pred             EEeCCCeEEEEEcC--CCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-EEEEEe-CCCCeEEEEE
Q psy2110         211 VGCNDGRIVLWDFL--TRGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE-CEQKYR-FPSPILKVQF  285 (622)
Q Consensus       211 ~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~  285 (622)
                      +++.|+.+.|||++  +.++.....+|.+.|+|++|+| ++..||+|+.|++|.+||+++-. ++..+. |...|..+.|
T Consensus       245 sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W  324 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW  324 (422)
T ss_pred             eecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence            88999999999999  5666778889999999999999 66788999999999999998754 455555 8899999999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEecCC--------------ceeecccCCCCceEEEEEeeCCCE-EEEEecCCeEEEEeCC
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDTDGD--------------HQIVPIDEDSDLSIVASFDRRGQH-VVTGNSKGKVLVLSCP  350 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~  350 (622)
                      +|....++++++.|+.+.+||+..-              ..+..-.+|...|..+.|+|+..+ |++.+.|+.+.||.+.
T Consensus       325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999999999999999999642              123555678899999999998765 5668899999999875

>KOG1445|consensus

Probab=99.92  E-value=6.1e-23  Score=195.15  Aligned_cols=208  Identities=17%  Similarity=0.224  Sum_probs=146.9

Q ss_pred             hhhhhhcccc-ceeEEEEcCCCC-EEEEecCCCCeEEEEEcCCCceE-----EEEeccCcceeEEEEeecCcccccccee
Q psy2110          73 QKLQDLVNKT-MWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLV-----KILHGTKGELLLDVVEFDGALDCISLAV  145 (622)
Q Consensus        73 ~~~~~~~~~~-~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~v~  145 (622)
                      +.+..+..|+ .++.+.|||-.. +||+|+. |..|+||.+..|-..     ...-+|...+                |.
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~-D~~VKiW~lp~g~~q~LSape~~~g~~~~~----------------vE  132 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSR-DEPVKIWKLPRGHSQKLSAPEIDVGGGNVI----------------VE  132 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccC-CCeeEEEecCCCcccccCCcceeecCCceE----------------EE
Confidence            3444444444 466889999655 5566765 599999998744221     1123344333                36


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  225 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~  225 (622)
                      ++.|+|...-|+..+..|.++|||+.+++.+..+..|..           .|.+..|+.||++|++++.|..|+|||.+.
T Consensus       133 ~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d-----------~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  133 CLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD-----------KVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             EeecccCcCceEEeccCceEEEEEcccCceeecccCCch-----------hhhccccccCCceEeeecCCcceEEeCCcc
Confidence            999999776555555679999999999988888887763           478899999999999999999999999874


Q ss_pred             -CceEEEeccCCcC-eeEEEEcCCCCEEEEEeCC----CcEEEEECCCC-cEEEEEe--CCCCeEEEEEeCCCCeEEEEe
Q psy2110         226 -RGIAKIISAHMHP-VCSISWSRNGYKIISASTD----NNVCIWDVLTG-ECEQKYR--FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       226 -~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~~~  296 (622)
                       ++.++...+|.+. -..+.|.-+-..|++.+.+    ..|++||.+.- ....++.  ....+.---|.||.+.++++|
T Consensus       202 ~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG  281 (1012)
T KOG1445|consen  202 SMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG  281 (1012)
T ss_pred             CCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec
Confidence             5677777888653 3346676555577776654    57999998753 3344433  445566667788888777777


Q ss_pred             eCCCcEEEEEec
Q psy2110         297 PMRHAAVLVDTD  308 (622)
Q Consensus       297 ~~~~~i~~~d~~  308 (622)
                      -.+..++.+.+.
T Consensus       282 KG~~~l~~lE~~  293 (1012)
T KOG1445|consen  282 KGTNKLFMLEMQ  293 (1012)
T ss_pred             CCcceEEEEEec
Confidence            777777776654

>KOG1538|consensus

Probab=99.92  E-value=6.7e-22  Score=189.23  Aligned_cols=272  Identities=19%  Similarity=0.276  Sum_probs=212.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      .+..++|-|||..|+.+..  ..+.+||.+.|..+.++++|.+.|+                 +++|+.||+++|+|+.|
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVy-----------------cVAys~dGkrFASG~aD   74 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVY-----------------CVAYAKDGKRFASGSAD   74 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEE-----------------EEEEccCCceeccCCCc
Confidence            4567999999999888763  6899999999999999999999995                 99999999999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSI  242 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  242 (622)
                      +.|.+|+-.-...++.  .|.           ..|.|+.|+|-...|++++-+ ..-+|........+ . .....+.+.
T Consensus        75 K~VI~W~~klEG~LkY--SH~-----------D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~C  138 (1081)
T KOG1538|consen   75 KSVIIWTSKLEGILKY--SHN-----------DAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICC  138 (1081)
T ss_pred             eeEEEecccccceeee--ccC-----------CeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEe
Confidence            9999997543222211  111           358999999999999988743 56788865543322 1 124578899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCC----CeEEEEeeCCCcEEEEEecCCceee
Q psy2110         243 SWSRNGYKIISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRN----DHMFLVCPMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~----~~~~~~~~~~~~i~~~d~~~~~~~~  314 (622)
                      +|..||++|+.|-.+|+|.+-+-. ++..-.+.    ..++|.+++|+|..    ..++.+...+.++.++.+.....- 
T Consensus       139 sWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-  216 (1081)
T KOG1538|consen  139 SWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-  216 (1081)
T ss_pred             eecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-
Confidence            999999999999999999998744 44433333    45789999999864    246677777777888877653221 


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .-..-.-...|+.+-++|.+++.|+.|+.+++|. +.|-.+.++-.....|..++..|++++++.|+.||+|..|++-
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            1111222345788999999999999999999986 5677777777788999999999999999999999999998764

>KOG4283|consensus

Probab=99.92  E-value=1e-22  Score=176.18  Aligned_cols=293  Identities=11%  Similarity=0.157  Sum_probs=211.2

Q ss_pred             cccceeEEEEcC-CCCEEEEecCCCCeEEEEEcCCCceE--E-EEeccCcceeEEEEeecCccccccceeEEEEcC-CCC
Q psy2110          80 NKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGNLV--K-ILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGT  154 (622)
Q Consensus        80 ~~~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~  154 (622)
                      +.+.++++...+ .|+|+++|+.| |.|.|||++.....  . .+..|...|     .......+...|.++.|-| |..
T Consensus        42 HgGsvNsL~id~tegrymlSGgad-gsi~v~Dl~n~t~~e~s~li~k~~c~v-----~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGAD-GSIAVFDLQNATDYEASGLIAKHKCIV-----AKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             CCCccceeeeccccceEEeecCCC-ccEEEEEeccccchhhccceeheeeec-----cccCCccceeeeeeeEEeeecCc
Confidence            446777888776 58999999986 99999999754311  0 000011000     0011111122346888888 556


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      ++.+++.|.+++|||.++-+....|...            ..|.+-+++|-   ..++|+|..+-.|++.|+.+|...+.
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~me------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~  183 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKME------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT  183 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeecC------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence            8889999999999999987666655543            24677777774   34788999999999999999999999


Q ss_pred             eccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCC-cEEEEE---------------eCCCCeEEEEEeCCCCeEEE
Q psy2110         232 ISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTG-ECEQKY---------------RFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~-~~~~~~---------------~~~~~v~~~~~~~~~~~~~~  294 (622)
                      +.+|.+.|.++.|+|... .|++|+.||.|++||++.. .+...+               .|.+.+..++|+.++.+ ++
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-l~  262 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-LA  262 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-hh
Confidence            999999999999999766 4678999999999999854 233322               15567899999999985 66


Q ss_pred             EeeCCCcEEEEEecCCceeec-cc--CCCCc---eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVP-ID--EDSDL---SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~-~~--~~~~~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                      +++.+..+++|+..++..... +.  .|...   -..+. +.+...++.--.++.+.++++-.+..++.+..|...|.+.
T Consensus       263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~  341 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA  341 (397)
T ss_pred             hccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE
Confidence            777889999999976532211 10  01110   00111 2223333333445889999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ++.|+-+...++..|+.|..|-..
T Consensus       342 ~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  342 AYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eecCchhhhhccccCCcccccccc
Confidence            999999999999999999999763

>KOG0269|consensus

Probab=99.92  E-value=9e-24  Score=205.64  Aligned_cols=286  Identities=11%  Similarity=0.188  Sum_probs=221.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCc----eEEEeccC---CcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCC-
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAH---MHPVCSISWSR-NGYKIISASTDNNVCIWDVLT-  267 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~---~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-  267 (622)
                      ..++..+++-..++.++. ..+.+|.+....    +...++..   ...+..+.|.. +.++|++++..|.|.+||+.. 
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~  120 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS  120 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence            466777888888888764 467788765422    22221111   12345677765 567999999999999999986 


Q ss_pred             --CcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC-CCEEEEEecCCe
Q psy2110         268 --GECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGK  343 (622)
Q Consensus       268 --~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~  343 (622)
                        .+.+..|. |...+.++.|++...+++++|+.|+.|++||++.......+......+..+.|+|. +..++++...|.
T Consensus       121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~  200 (839)
T KOG0269|consen  121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY  200 (839)
T ss_pred             ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence              34444555 88999999999999999999999999999999999988888889999999999994 678889999999


Q ss_pred             EEEEeCCCc-cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEE
Q psy2110         344 VLVLSCPAL-ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC  422 (622)
Q Consensus       344 i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (622)
                      +.+||++.. ++...+.+|.++|.++.|+|++.+||+|+.|+.|+||+...       ....+...+   ....++.++.
T Consensus       201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~-------~~~~~~~tI---nTiapv~rVk  270 (839)
T KOG0269|consen  201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD-------SRAKPKHTI---NTIAPVGRVK  270 (839)
T ss_pred             EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC-------CCccceeEE---eecceeeeee
Confidence            999999865 46778889999999999999999999999999999999983       222333333   2345667899


Q ss_pred             EcCCCCeEEEeeC--CCCeEEEEECCCCe-eEEEEecCCCCceeEEEECC-CCCEEEEEe-CCcEEEeecCCccccc
Q psy2110         423 FSGDGEYVCAGSA--RQHALYIWEKSVGN-LVKILHGTKGELLLDVVWHP-VRPIIASIS-SGVVSLWAQNQVENWS  494 (622)
Q Consensus       423 ~spdg~~l~~~~~--~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~v~~sp-~~~~l~s~~-dg~v~iw~~~~~~~~~  494 (622)
                      |-|+.++.++.++  .|..|+|||+...- +.+++..|... ++.++|.. +...+.+++ ||+|..-.+.....+.
T Consensus       271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~-vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi  346 (839)
T KOG0269|consen  271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS-VTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI  346 (839)
T ss_pred             eccCccchhhhhhccccceEEEEeeccccccceeeeccCcc-ccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence            9998876544332  47899999997643 45677888876 99999966 345788999 9998877665444443

>KOG1332|consensus

Probab=99.92  E-value=3.6e-23  Score=174.31  Aligned_cols=236  Identities=22%  Similarity=0.349  Sum_probs=188.5

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCC---ceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEeeCC
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVG---NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGCND  162 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~d  162 (622)
                      ...--|+.||++++| ++|+|+.++..   +++.+|.||.+++                 +.++|..  .|.+||+++.|
T Consensus        18 ~lDyygkrlATcsSD-~tVkIf~v~~n~~s~ll~~L~Gh~GPV-----------------wqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen   18 QLDYYGKRLATCSSD-GTVKIFEVRNNGQSKLLAELTGHSGPV-----------------WKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             hhhhhcceeeeecCC-ccEEEEEEcCCCCceeeeEecCCCCCe-----------------eEEeecccccCcEeeEeecC
Confidence            344458999999986 99999999654   5788999999999                 5888866  79999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCC-c--eEEEeccCCc
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTR-G--IAKIISAHMH  237 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~~  237 (622)
                      |.|.||.-..++-.+......+.         ..|++++|.|.  |-.|++++.||.|.|.+.++. .  ..+...+|.-
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~---------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHS---------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhc---------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            99999998887543333222111         45889999886  558999999999999998764 2  3345678999


Q ss_pred             CeeEEEEcCC---C-----------CEEEEEeCCCcEEEEECCCCcEE--EEEe-CCCCeEEEEEeCCC---CeEEEEee
Q psy2110         238 PVCSISWSRN---G-----------YKIISASTDNNVCIWDVLTGECE--QKYR-FPSPILKVQFHPRN---DHMFLVCP  297 (622)
Q Consensus       238 ~v~~~~~s~~---~-----------~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~---~~~~~~~~  297 (622)
                      .|++++|.|.   |           +.|++|+.|+.|+||+...++..  +.+. |..-|+.++|.|.-   +..+++++
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S  230 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS  230 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence            9999999985   4           57999999999999999886432  3344 88899999999964   56799999


Q ss_pred             CCCcEEEEEecCC---ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         298 MRHAAVLVDTDGD---HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       298 ~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      .|+++.+|..+..   -....+......+..+.||..|..|++++.|+.+.+|--.
T Consensus       231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999999998743   1233344466788999999999999999999999999743

>KOG2919|consensus

Probab=99.92  E-value=1.4e-22  Score=177.70  Aligned_cols=274  Identities=16%  Similarity=0.191  Sum_probs=210.4

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCc------------eEEEEeccCcceeEEEEeecCccccccceeEEEE----
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGN------------LVKILHGTKGELLLDVVEFDGALDCISLAVTCAF----  149 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~----  149 (622)
                      .+.|||||..|++-+.+ +.+.+|++...-            ....++-..+..                |...+|    
T Consensus        54 gckWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~t----------------vydy~wYs~M  116 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGET----------------VYDYCWYSRM  116 (406)
T ss_pred             cceeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCE----------------EEEEEeeecc
Confidence            58999999999999986 899999975211            111122222222                234444    


Q ss_pred             ---cCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC-C
Q psy2110         150 ---NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-T  225 (622)
Q Consensus       150 ---s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-~  225 (622)
                         .|+..++|+.+.+.-|++||..+|+....+....+      ++......+++|+|||.+|++|. ...|++||+. .
T Consensus       117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh------~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~Rp  189 (406)
T KOG2919|consen  117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDH------QDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRP  189 (406)
T ss_pred             ccCCCccceeeeccccCceeeeeccccccccchhhhhh------HHhhhhheeEEecCCCCeEeecc-cceEEEeeccCC
Confidence               36778999999999999999999988777654432      22223567999999999998774 7799999983 4


Q ss_pred             CceEE--Ee-----ccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEe
Q psy2110         226 RGIAK--II-----SAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       226 ~~~~~--~~-----~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      |....  ..     .+..+-|.+++|+| +.+.++.++....+-|+.-..+.+++.+. |.+.|+.++|+++|++++..+
T Consensus       190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc
Confidence            43221  11     13467899999999 55689999998899999888888888776 889999999999999888888


Q ss_pred             eCCCcEEEEEecCC-ceeecccCCCC-ceE--EEEEeeCCCEEEEEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEc
Q psy2110         297 PMRHAAVLVDTDGD-HQIVPIDEDSD-LSI--VASFDRRGQHVVTGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFA  371 (622)
Q Consensus       297 ~~~~~i~~~d~~~~-~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s  371 (622)
                      -.+..|..||++.. .++..+..|.. ...  -....|.+++|++|+.+|.|++||+.+ +..+..+..+...++.++++
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsln  349 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLN  349 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecC
Confidence            88999999999864 55566665544 223  345568899999999999999999998 77788888999999999999


Q ss_pred             CCCCEEEEEeCC
Q psy2110         372 RRGNCLLVNTGD  383 (622)
Q Consensus       372 ~~~~~l~~~~~d  383 (622)
                      |--..+++++..
T Consensus       350 P~mpilatssGq  361 (406)
T KOG2919|consen  350 PIMPILATSSGQ  361 (406)
T ss_pred             cccceeeeccCc
Confidence            998877777654

>KOG4378|consensus

Probab=99.91  E-value=8.1e-23  Score=188.90  Aligned_cols=260  Identities=17%  Similarity=0.223  Sum_probs=206.3

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCC--CceE--EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +.+++|+....++++....|..+++|.-..  ++..  ..+.+. ..                  .|++......++++|
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-~~------------------~Cv~~~s~S~y~~sg   97 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-NA------------------FCVACASQSLYEISG   97 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc-hH------------------HHHhhhhcceeeecc
Confidence            567889877654444443457888987432  2222  222222 11                  256655666899999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC-CcC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH-MHP  238 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~  238 (622)
                      +..+.|+|||+....+.+.+..|.           +.|+++.++....+||+++..|.|.|..+.++.....|... ...
T Consensus        98 G~~~~Vkiwdl~~kl~hr~lkdh~-----------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   98 GQSGCVKIWDLRAKLIHRFLKDHQ-----------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             CcCceeeehhhHHHHHhhhccCCc-----------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            999999999999766666676665           45999999999999999999999999999998877777654 345


Q ss_pred             eeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         239 VCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       239 v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      |.-+.|++..+ +|.+++.+|.|.+||+....+...+.  |..+...++|+|.++.++++.+.|..|.+||.+.......
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~  246 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR  246 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence            66899999766 45678889999999999887776665  8899999999999999999999999999999987654444


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc-cEEEEEecCCCCEEEEEEcCCC
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL-ELKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~  374 (622)
                      +. ...+...++|+++|.+|++|+..|.|..||++.. .++..+..|...|++++|-+.-
T Consensus       247 l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  247 LT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            43 2456778999999999999999999999999864 4888899999999999997764

>KOG0650|consensus

Probab=99.91  E-value=1.8e-22  Score=190.92  Aligned_cols=278  Identities=18%  Similarity=0.309  Sum_probs=219.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC--EEEEEeCCCcEEEEECCCC----
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY--KIISASTDNNVCIWDVLTG----  268 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~----  268 (622)
                      +.|.++...|.|.+|++|+.||+|+||.+.++.+++.+.- .+.|.|++|+|.+.  .||++- ...+.|.+..-|    
T Consensus       401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e  478 (733)
T KOG0650|consen  401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLE  478 (733)
T ss_pred             CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhh
Confidence            5689999999999999999999999999999999988864 46899999999665  333332 233444332111    


Q ss_pred             ----------------------------------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCce
Q psy2110         269 ----------------------------------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQ  312 (622)
Q Consensus       269 ----------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~  312 (622)
                                                        .....+.+..+|..+.||..|.++..++..++  .+.+.++.....
T Consensus       479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s  558 (733)
T KOG0650|consen  479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS  558 (733)
T ss_pred             hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence                                              01234557889999999999998887776544  588888887777


Q ss_pred             eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         313 IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ...+....+.+.++.|+|...++++++.. .|+|||+..++++..+......|.+++.+|.|..|+.++.|+.+..||++
T Consensus       559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  559 QSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             cCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc
Confidence            78888888899999999999999988765 59999999988888888778899999999999999999999999999998


Q ss_pred             cccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC------C---CeeEEEEecCCC---C
Q psy2110         393 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS------V---GNLVKILHGTKG---E  460 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~------~---~~~~~~~~~~~~---~  460 (622)
                      -        ..++.+.+..+  ...+.+++|++.-.++++|+. ||++.|+.-.      .   --+++.|++|..   -
T Consensus       638 l--------sskPyk~lr~H--~~avr~Va~H~ryPLfas~sd-Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~  706 (733)
T KOG0650|consen  638 L--------SSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSD-DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDL  706 (733)
T ss_pred             c--------CcchhHHhhhh--hhhhhhhhhccccceeeeecC-CCcEEEEeeeeehhhhcCCceEeeeeccCceeeccc
Confidence            3        33455555433  244578899999899999985 8999888521      1   124677788752   2


Q ss_pred             ceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         461 LLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       461 ~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      .|.++.|||..++|++++ ||+|++|.
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ceEeecccCCCceEEecCCCceEEeeC
Confidence            388899999999999999 99999983

>KOG2919|consensus

Probab=99.91  E-value=2.5e-22  Score=176.09  Aligned_cols=272  Identities=17%  Similarity=0.302  Sum_probs=214.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCC-------ce-----EEEec-cCCcCeeEEEEc-------CCCCEEEEEeC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-------GI-----AKIIS-AHMHPVCSISWS-------RNGYKIISAST  256 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-------~~-----~~~~~-~~~~~v~~~~~s-------~~~~~l~s~~~  256 (622)
                      ...+.|+|||..|++-+.|..+.+|++...       ..     ...++ .....|...+|-       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            457899999999999999999999997521       10     01111 123456777774       57788999999


Q ss_pred             CCcEEEEECCCCcEEEEEe---CC---CCeEEEEEeCCCCeEEEEeeCCCcEEEEEe-cCCc--eeecc-----cCCCCc
Q psy2110         257 DNNVCIWDVLTGECEQKYR---FP---SPILKVQFHPRNDHMFLVCPMRHAAVLVDT-DGDH--QIVPI-----DEDSDL  322 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~--~~~~~-----~~~~~~  322 (622)
                      +.-|++||.-+|+....++   +.   ....+++|+|||..++  ++....|+++|+ +.+.  .+...     .+..+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            9999999999999888776   22   3467899999999644  567889999999 4332  22222     233677


Q ss_pred             eEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCC
Q psy2110         323 SIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKD  400 (622)
Q Consensus       323 ~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~  400 (622)
                      +.+++|+|.. +.+++|+...++-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+. |..|..||++.       
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~-------  282 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY-------  282 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh-------
Confidence            8899999965 58999999999999998899999999999999999999999999999976 77899999995       


Q ss_pred             CCCCcceeeecccc-ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC-CeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         401 GDPEPIQKLQDLVN-KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       401 ~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                       ...++..+..+.. .....-....|+|++|++|+. +|.|++||+++ |..+..+..+... ++.++++|--+++|+++
T Consensus       283 -~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk~~gn~~sv~~~~sd~-vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  283 -SRDPVYALERHVGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLKDLGNEVSVTGNYSDT-VNGVSLNPIMPILATSS  359 (406)
T ss_pred             -ccchhhhhhhhccCccceEEEecCCCCceeeccCC-CccEEEEecCCCCCccccccccccc-ccceecCcccceeeecc
Confidence             3455666666555 233334577899999999997 99999999998 7778888878776 99999999999999987


Q ss_pred             CC
Q psy2110         479 SG  480 (622)
Q Consensus       479 dg  480 (622)
                      ..
T Consensus       360 Gq  361 (406)
T KOG2919|consen  360 GQ  361 (406)
T ss_pred             Cc
Confidence            43

>KOG0269|consensus

Probab=99.91  E-value=1.9e-23  Score=203.39  Aligned_cols=285  Identities=13%  Similarity=0.188  Sum_probs=211.5

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ++..+++-..|+.++. ..++||.+................    ......+..+.|+. +.++||+++..|.|.+||+.
T Consensus        44 AIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k----qn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   44 AISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK----QNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             eEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc----cceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            6677788888888876 478888876643332222221111    11112344566764 45789999999999999998


Q ss_pred             C---CceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         225 T---RGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       225 ~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      .   .+.+..|..|...++++.|++ ...+|++|+.||.|++||++..+...++. ....|+.++|+|.....|+++...
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            6   556677889999999999998 56789999999999999999988888777 567899999999999999999999


Q ss_pred             CcEEEEEecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCE-
Q psy2110         300 HAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNC-  376 (622)
Q Consensus       300 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~-  376 (622)
                      |.+++||++.. +....+..|.+.+.++.|+|++.+||+|+.|+.|+|||..+.+...... ....+|..+.|-|..++ 
T Consensus       199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h  278 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH  278 (839)
T ss_pred             ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence            99999999865 5678889999999999999999999999999999999998665433222 23478999999998764 


Q ss_pred             EEEEeC--CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeCCCCeEEEEECC
Q psy2110         377 LLVNTG--DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       377 l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~d~~i~iwd~~  446 (622)
                      |++++.  |..|+|||++.        ..-+...+..+.  ..++.++|.. |-..+.+++. |++|..-..+
T Consensus       279 LAtcsmv~dtsV~VWDvrR--------PYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sK-D~tv~qh~~k  340 (839)
T KOG0269|consen  279 LATCSMVVDTSVHVWDVRR--------PYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSK-DGTVLQHLFK  340 (839)
T ss_pred             hhhhhccccceEEEEeecc--------ccccceeeeccC--ccccceeccCCCceeeEeecC-ccHHHHhhhh
Confidence            555543  78899999983        222333333222  2334567765 3345555554 6666544333

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.91  E-value=1.3e-19  Score=186.18  Aligned_cols=365  Identities=25%  Similarity=0.446  Sum_probs=280.4

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc-eEEEEeccCc-ceeEEEEeecCccccccceeEEEE-cCCCC-
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-LVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAF-NKRGT-  154 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~-s~d~~-  154 (622)
                      .+...+.++.|.+.+..++.++.+ +.+.+|+...+. ....+.++.. .+                 ..+.+ ++++. 
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  124 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSV-----------------SKLALSSPDGNS  124 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCce-----------------eeEEEECCCcce
Confidence            445556789999999999998865 899999998887 6666666443 33                 34555 78887 


Q ss_pred             EEEEeeC-CCcEEEEecCC-cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEE
Q psy2110         155 LLAVGCN-DGRIVLWDFLT-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       155 ~l~s~~~-dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~  231 (622)
                      +++..+. |+.+++|+... ......+..|.           ..+..++|+|+++.+++++. ++.+++|++..+..+..
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHS-----------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST  193 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCc-----------ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence            5555444 99999999987 55666666554           34789999999998888885 99999999999888899


Q ss_pred             eccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEE-EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         232 ISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQ-KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      +.+|...|.+++|+|++. .+++++.|+.|++||...+.... .+. +.... ...|+|++ .++++++.++.+++|+..
T Consensus       194 ~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeec
Confidence            999999999999999998 55555899999999998887777 454 44443 33899988 466789999999999998


Q ss_pred             CCce-eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEE-eCCC
Q psy2110         309 GDHQ-IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVN-TGDR  384 (622)
Q Consensus       309 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~d~  384 (622)
                      .... ......|...+.++.++|++..+++++.++.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+
T Consensus       272 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  351 (466)
T COG2319         272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG  351 (466)
T ss_pred             CCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence            6654 33335678889999999988888888888889999998888777666  787789999994333556666 5788


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE-eeCCCCeEEEEECCCCeeEEEEecCCCCcee
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA-GSARQHALYIWEKSVGNLVKILHGTKGELLL  463 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  463 (622)
                      .+++|++...         ......   ........+.+++ ...++. +. .++.+.+|+............+.. .+.
T Consensus       352 ~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~  416 (466)
T COG2319         352 TIRLWDLRTG---------KPLKTL---EGHSNVLSVSFSP-DGRVVSSGS-TDGTVRLWDLSTGSLLRNLDGHTS-RVT  416 (466)
T ss_pred             cEEeeecCCC---------ceeEEe---cCCceEEEEEECC-CCCEEEEec-CCCceEEEecccCeeeeeccCCCC-cEE
Confidence            9999998841         111111   1111156778888 544444 34 488999999998887777766532 399


Q ss_pred             EEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         464 DVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       464 ~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      ...+++++..+++++ ++.+++|+...
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         417 SLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEECCCCcEEEEecCCCcEEEEeccC
Confidence            999999999999877 89999999865

>KOG0267|consensus

Probab=99.91  E-value=4.1e-24  Score=206.34  Aligned_cols=229  Identities=20%  Similarity=0.385  Sum_probs=207.7

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +.|+..-..++.+++|+.+ ..+-+|.+.....+..|.+|..+|                 .++.|+++..+|++|+.+|
T Consensus        31 v~~lk~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespI-----------------eSl~f~~~E~Llaagsasg   92 (825)
T KOG0267|consen   31 VGCLKIRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPI-----------------ESLTFDTSERLLAAGSASG   92 (825)
T ss_pred             hceeeeeccceeeccCCCc-eeeccccccCCchhheeeccCCcc-----------------eeeecCcchhhhcccccCC
Confidence            3455555667889999875 788899998877888899999998                 5999999999999999999


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  243 (622)
                      +|++||++.++.++.+.+|..           .+..+.|+|-+.+.+.|+.|+.+++||.+...+...+.+|...+..+.
T Consensus        93 tiK~wDleeAk~vrtLtgh~~-----------~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   93 TIKVWDLEEAKIVRTLTGHLL-----------NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             ceeeeehhhhhhhhhhhcccc-----------CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            999999999999998888874           478899999999999999999999999998999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCc
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL  322 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  322 (622)
                      |+|+|+++++++.|..++|||...|+....|. |...+..+.|+|.. .++..|+.|..+++||+++-..+.........
T Consensus       162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~  240 (825)
T KOG0267|consen  162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDG  240 (825)
T ss_pred             ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCC
Confidence            99999999999999999999999999999998 88999999999965 57889999999999999998888888888899


Q ss_pred             eEEEEEeeCCCEEEEEecCC
Q psy2110         323 SIVASFDRRGQHVVTGNSKG  342 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg  342 (622)
                      +.+.+|++++..+++|....
T Consensus       241 v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  241 VRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeecCCceeeecCchhh
Confidence            99999999999999887654

>KOG4378|consensus

Probab=99.90  E-value=3e-22  Score=185.20  Aligned_cols=288  Identities=12%  Similarity=0.152  Sum_probs=222.5

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcc-ccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRG-IAKIISA  181 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~-~~~~~~~  181 (622)
                      ..+++||+...+....+..|..+-               .+.++.|+.... .+++.+.|..|++|.-.... .+.....
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~p---------------g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k   76 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEP---------------GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK   76 (673)
T ss_pred             CceEEeecccccCccccccCCCCC---------------cceeeeccccceEEEeecCCceeEEEecccCCCCccceeec
Confidence            379999998766655555554432               125888987764 33445678889999643210 0111111


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC  261 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  261 (622)
                      ...          ....|++......++++|+..+.|+|||+....+.+.+++|...|+++.++....+||+++..|.|.
T Consensus        77 ~~g----------d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii  146 (673)
T KOG4378|consen   77 LTG----------DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII  146 (673)
T ss_pred             ccc----------chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence            000          1123444444558999999999999999998888899999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEEeCC--CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc-cCCCCceEEEEEeeCC-CEEEE
Q psy2110         262 IWDVLTGECEQKYRFP--SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI-DEDSDLSIVASFDRRG-QHVVT  337 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~  337 (622)
                      |..+.++.....|.++  ..+.-+.|+|..+.++.+++++|.+.+||+....++..+ ..|..+...++|+|.. .+|++
T Consensus       147 ih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  147 IHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             EEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            9999999988888855  456789999999999999999999999999988776654 5688888899999966 56778


Q ss_pred             EecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110         338 GNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (622)
                      .+.|..|.+||++..+....+.. ..+...++|+++|.+|+.|+..|.|..||++.        .+.++..+..+...  
T Consensus       227 VG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~--------~k~Pv~v~sah~~s--  295 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS--------TKAPVAVRSAHDAS--  295 (673)
T ss_pred             ecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEeccc--------CCCCceEeeecccc--
Confidence            89999999999997766665543 47789999999999999999999999999995        55667666655444  


Q ss_pred             eeeEEEcCCC
Q psy2110         418 WKKCCFSGDG  427 (622)
Q Consensus       418 ~~~~~~spdg  427 (622)
                      +.+++|-|.-
T Consensus       296 Vt~vafq~s~  305 (673)
T KOG4378|consen  296 VTRVAFQPSP  305 (673)
T ss_pred             eeEEEeeecc
Confidence            6778887754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.90  E-value=4.5e-19  Score=182.08  Aligned_cols=366  Identities=23%  Similarity=0.410  Sum_probs=268.1

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK   81 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (622)
                      +.|.++.|.+.+..++.++.|+.+.+|+.....               ..+..+...                    .. 
T Consensus        66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~~--------------------~~-  109 (466)
T COG2319          66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------------KLIKSLEGL--------------------HD-  109 (466)
T ss_pred             ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---------------eeEEEEecc--------------------CC-
Confidence            467788888888888888888888888854322               011111110                    00 


Q ss_pred             cceeEEEE-cCCCC-EEEEecCCCCeEEEEEcCC-CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          82 TMWKKCCF-SGDGE-YVCAGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        82 ~~~~~~~~-sp~~~-~l~~~~~~~~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ..+..+.+ ++++. .++..+..++.+.+|+... ......+..|...+                 ..++|+|++..+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~  172 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV-----------------TSLAFSPDGKLLAS  172 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccE-----------------EEEEECCCCCEEEe
Confidence            11223344 88888 5555454368999999998 88889999999988                 48999999998888


Q ss_pred             eeC-CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEE-EeccC
Q psy2110         159 GCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAK-IISAH  235 (622)
Q Consensus       159 ~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~  235 (622)
                      ++. |+.+++|+...+.....+..|.           ..+.+++|+|++. .+++++.|+.|++||...+.... .+.+|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         173 GSSLDGTIKLWDLRTGKPLSTLAGHT-----------DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             cCCCCCceEEEEcCCCceEEeeccCC-----------CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence            886 9999999999877777666644           3589999999998 55555899999999988777777 68888


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEE-eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC-EQKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      .... ...|++++..+++++.|+.+++|++..... ...+ .+...+.++.|+|++..++. ++.++.+.+|+.......
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEEEEcCCCceE
Confidence            8775 448999998899999999999999987664 4443 46789999999997776666 777788999988877655


Q ss_pred             eccc--CCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEE
Q psy2110         314 VPID--EDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV-NTGDRLIRVY  389 (622)
Q Consensus       314 ~~~~--~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~i~  389 (622)
                      ....  .|...+..+.+.+++..++.+ ..++.+.+|+............. ..+..+.+.+ ...++. +..++.+.+|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~  397 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLW  397 (466)
T ss_pred             EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEE
Confidence            5554  666678888884333566665 67788999999887733333222 2288999988 543444 5788999999


Q ss_pred             ecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         390 NHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      +....         ..........  ..+..+.+++++.+++.++. ++.+++|+..+
T Consensus       398 ~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  443 (466)
T COG2319         398 DLSTG---------SLLRNLDGHT--SRVTSLDFSPDGKSLASGSS-DNTIRLWDLKT  443 (466)
T ss_pred             ecccC---------eeeeeccCCC--CcEEEEEECCCCcEEEEecC-CCcEEEEeccC
Confidence            99842         1111111111  45566799999999998776 88999999887

>KOG1034|consensus

Probab=99.90  E-value=6.9e-22  Score=173.77  Aligned_cols=318  Identities=15%  Similarity=0.273  Sum_probs=220.2

Q ss_pred             eEEEEcC-----CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC----CCEEEEEeCC
Q psy2110         145 VTCAFNK-----RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR----GTLLAVGCND  215 (622)
Q Consensus       145 ~~~~~s~-----d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~d  215 (622)
                      ..++|++     .-+.+|+++. ..+.+|.......+..++....+...      .....++|+-+    ..++|+|+.-
T Consensus        42 ~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~------Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   42 FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHD------ESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCC------cceEEEEEEecCCCCCeeEEeecce
Confidence            4888875     2345666655 57889987654433333332222111      12355666543    3488899999


Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCC
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRND  290 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~  290 (622)
                      |.|+|.|+.++++...+.+|...|+.+.+.|+ .+++++++.|..|++|++++..++..+.    |...|.++.|++++.
T Consensus       115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            99999999999999999999999999999995 4789999999999999999999999986    778999999999998


Q ss_pred             eEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         291 HMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       291 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                       .+++++.|..+.+|++..+.....+..      +..|+|++...-.-.  ..+.+.+..      +-.-|...|-|+.|
T Consensus       195 -~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt--~~~~fp~fs------t~diHrnyVDCvrw  259 (385)
T KOG1034|consen  195 -RIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPT--PKTHFPDFS------TTDIHRNYVDCVRW  259 (385)
T ss_pred             -eeeccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCc--ccccccccc------ccccccchHHHHHH
Confidence             689999999999999986533222221      134455442211000  012222211      23457777888887


Q ss_pred             cCCCCEEEEEeCCCcEEEEeccccccc-----CCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         371 ARRGNCLLVNTGDRLIRVYNHQEVLNA-----GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       371 s~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      -  |.++++-+-++.|..|........     ........+..+.-.....-....+|.|-+++||.|.. .|.|++||+
T Consensus       260 ~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-~g~v~vwdL  336 (385)
T KOG1034|consen  260 F--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-SGKVYVWDL  336 (385)
T ss_pred             H--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC-CCcEEEEEC
Confidence            5  568888888899999987422221     11112222333333333333456788999999999997 899999999


Q ss_pred             CCCeeE---EEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         446 SVGNLV---KILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       446 ~~~~~~---~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      +..++.   ...+...+..|.+.+|+.++.+|+... |++|.-||.
T Consensus       337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            876652   122223345599999999999887777 999999885

>KOG0270|consensus

Probab=99.89  E-value=2.1e-21  Score=177.62  Aligned_cols=237  Identities=18%  Similarity=0.282  Sum_probs=180.6

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCc---eEE------------------EeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEE
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLTRG---IAK------------------IISAHMHPVCSISWSRN-GYKIISASTDNNVCI  262 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~~~---~~~------------------~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i  262 (622)
                      .|+++|.|+.+..|.|||+.-..   +..                  ...+|+..|..++|+.. .+.|++|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999999999999985211   101                  12368888999999874 457899999999999


Q ss_pred             EECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEec
Q psy2110         263 WDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNS  340 (622)
Q Consensus       263 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~  340 (622)
                      ||+.++++...+. |...|.++.|+|....++++|+.|+++.+.|.+........-...+.+-.++|.+.. ..+++++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            9999999999998 788999999999999999999999999999999543332222335567788998876 45677889


Q ss_pred             CCeEEEEeCCCc-cEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee
Q psy2110         341 KGKVLVLSCPAL-ELKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW  418 (622)
Q Consensus       341 dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (622)
                      ||+++-+|+++. +++.+++.|...|.++++++.- .++++++.|+.|++|++...       .+..+....-..+.  .
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-------~~~~v~~~~~~~~r--l  421 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-------SPKSVKEHSFKLGR--L  421 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-------CCcccccccccccc--e
Confidence            999999999875 8999999999999999998764 46788899999999999831       22222111111111  2


Q ss_pred             eeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeE
Q psy2110         419 KKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLV  451 (622)
Q Consensus       419 ~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~  451 (622)
                      .|.++.|+-. ++|.|+. .+.++|||+.+...+
T Consensus       422 ~c~~~~~~~a~~la~GG~-k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  422 HCFALDPDVAFTLAFGGE-KAVLRVWDIFTNSPV  454 (463)
T ss_pred             eecccCCCcceEEEecCc-cceEEEeecccChhH
Confidence            3446666654 4455665 778999999876544

>KOG0267|consensus

Probab=99.89  E-value=1.7e-23  Score=202.09  Aligned_cols=245  Identities=19%  Similarity=0.313  Sum_probs=217.2

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  183 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  183 (622)
                      ..+++|+.+      .+..|...+                 .++..-..++.+++|+.|..+-+|.+..-..+..+.+|.
T Consensus        14 t~Lr~~~~~------~~~~hsaav-----------------~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he   70 (825)
T KOG0267|consen   14 TKLRVWDTR------EFVAHSAAV-----------------GCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE   70 (825)
T ss_pred             eccccccch------hhhhhhhhh-----------------ceeeeeccceeeccCCCceeeccccccCCchhheeeccC
Confidence            567788764      334566555                 255655667899999999999999988776666677776


Q ss_pred             CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy2110         184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIW  263 (622)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  263 (622)
                                 +.|-++.|++...+|++|+.+|+|++||++..+.+++|.+|...+.++.|+|-+.++++|+.|+.+.+|
T Consensus        71 -----------spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   71 -----------SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW  139 (825)
T ss_pred             -----------CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence                       458999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC
Q psy2110         264 DVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG  342 (622)
Q Consensus       264 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  342 (622)
                      |++...|...+. |...+..+.|+|+|. +++.++.|..+++||+..+.....+..|...+..+.|+|..-+++.|+.|+
T Consensus       140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  140 DIRKKGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR  218 (825)
T ss_pred             hhhccCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc
Confidence            999888888888 777889999999998 577888899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      ++++||+++.+.+.........|.+.+|+|+++.+++|...
T Consensus       219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999999999999888888999999999999988887654

>KOG4328|consensus

Probab=99.89  E-value=2.4e-21  Score=177.84  Aligned_cols=281  Identities=17%  Similarity=0.214  Sum_probs=210.4

Q ss_pred             eEEEEcCCC--CEEEEeeCCCcEEEEecCCc----ccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCe
Q psy2110         145 VTCAFNKRG--TLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGR  217 (622)
Q Consensus       145 ~~~~~s~d~--~~l~s~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~  217 (622)
                      ++++|+|..  +++|+|..-|.|-+||+.+.    ..+..+..|.           ..|.++.|+|.. ..+++.+.||+
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----------~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----------GPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----------ccccceEecCCChhheeeeccCce
Confidence            699999965  48899999999999999532    1222333333           358999999965 57888999999


Q ss_pred             EEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEe-CCCCeEEEEEeCCCCeEE
Q psy2110         218 IVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC-EQKYR-FPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       218 i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~  293 (622)
                      |++-|++.......  +......+.++.|+.+...++.+..=|.+.+||++++.. ...+. |...|.+++++|..++++
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99999987654333  333455678888988888888887778999999998765 33333 777999999999999999


Q ss_pred             EEeeCCCcEEEEEecCCc----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC----CccEEEEEecCC---
Q psy2110         294 LVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP----ALELKASFKAST---  362 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~---  362 (622)
                      ++++.|++.++||++.-.    +......|...|.++.|||.+-.|++.+.|..|+|||..    ...+...+....   
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG  418 (498)
T ss_pred             eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccc
Confidence            999999999999998532    345667789999999999998889999999999999983    333444443111   


Q ss_pred             --CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCCCe
Q psy2110         363 --TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQHA  439 (622)
Q Consensus       363 --~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d~~  439 (622)
                        -.....+|.|+..+++++..-..|-|+|-..         .+.+..+..... ..+.+ ..|+|-+..+++|+...|.
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~---------~q~v~el~~P~~-~tI~~vn~~HP~~~~~~aG~~s~Gk  488 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG---------GQMVCELHDPES-STIPSVNEFHPMRDTLAAGGNSSGK  488 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCC---------CEEeeeccCccc-cccccceeecccccceeccCCccce
Confidence              1234568999999999998888899998772         222333322222 23333 3899999877777776899


Q ss_pred             EEEEECC
Q psy2110         440 LYIWEKS  446 (622)
Q Consensus       440 i~iwd~~  446 (622)
                      |+||--+
T Consensus       489 i~vft~k  495 (498)
T KOG4328|consen  489 IYVFTNK  495 (498)
T ss_pred             EEEEecC
Confidence            9999654

>KOG4497|consensus

Probab=99.89  E-value=7.4e-21  Score=167.27  Aligned_cols=362  Identities=14%  Similarity=0.117  Sum_probs=232.2

Q ss_pred             EEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCc-eEEeecCCceEEEeechhhhhcCCCCCCc
Q psy2110           6 VASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGN-CLLVNTGDRLIRVYNHQEVLNAGKDGDPE   70 (622)
Q Consensus         6 ~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~   70 (622)
                      -++|||+|+|+|++++ ..+.|-|..+.++.              ..+.- .|.....++.|.+|++....         
T Consensus        13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------   82 (447)
T ss_pred             ceeECCCCCeeeeeee-eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce---------
Confidence            3689999999999865 58888898886544              22333 44566788899999986321         


Q ss_pred             cchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEc
Q psy2110          71 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN  150 (622)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s  150 (622)
                      -  .-.--.+..+..+++|||||+.|+..+.-+-.|.||.+.+.+....- -....+                 ..++|+
T Consensus        83 w--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~-----------------kg~~f~  142 (447)
T KOG4497|consen   83 W--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNV-----------------KGYAFH  142 (447)
T ss_pred             e--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-ccccCc-----------------eeEEEC
Confidence            1  12223456667789999999888777766689999999877664432 222222                 388999


Q ss_pred             CCCCEEEEeeCCCc---EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCC
Q psy2110         151 KRGTLLAVGCNDGR---IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLT  225 (622)
Q Consensus       151 ~d~~~l~s~~~dg~---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~  225 (622)
                      |||++.+.+++..-   +.|.....-..++.+.....           ..+.+.|+|||+.||+-..  +..|..|.   
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~-----------DltgieWsPdg~~laVwd~~Leykv~aYe---  208 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI-----------DLTGIEWSPDGNWLAVWDNVLEYKVYAYE---  208 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc-----------cccCceECCCCcEEEEecchhhheeeeee---
Confidence            99999998876421   22221222222333332221           2567899999998876532  22222222   


Q ss_pred             CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe--------------------EEEEE
Q psy2110         226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPI--------------------LKVQF  285 (622)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v--------------------~~~~~  285 (622)
                               -.-.+..++|+|.+++|+.|+.|+.+|+.+--+-+....+-|...+                    .++.|
T Consensus       209 ---------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf  279 (447)
T KOG4497|consen  209 ---------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF  279 (447)
T ss_pred             ---------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence                     1245788999999999999999999999887666655554433222                    23344


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEe-------cCCceeecccCCCCceEEEEEeeCCCEEEEEecC--CeEEEEeCCCccEEE
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDT-------DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK--GKVLVLSCPALELKA  356 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~  356 (622)
                      .|.+-.   ++-....-.+|..       ...++...+......+.-++|++|..++++-+..  +.+.+||++..++..
T Consensus       280 ~p~~~~---a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a  356 (447)
T KOG4497|consen  280 TPTDLE---AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA  356 (447)
T ss_pred             CCCccc---cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh
Confidence            442210   0000000011111       1112222333344556679999999999986543  579999999776544


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR  436 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  436 (622)
                      .+ ....+|+...|+|....|+.+.....+++|....         +   .....+..+-.+..++|.-+|..++..+.|
T Consensus       357 vL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg---------~---~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD  423 (447)
T KOG4497|consen  357 VL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG---------P---RVVGVPKKGFNIQKLQWLQPGEFIVLCGKD  423 (447)
T ss_pred             hh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCC---------c---eEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence            43 3457899999999999999998888899998762         1   122222333566788999999999988873

>KOG1009|consensus

Probab=99.89  E-value=5.8e-21  Score=172.81  Aligned_cols=324  Identities=16%  Similarity=0.245  Sum_probs=211.0

Q ss_pred             cccceeEEEEcCCCC-EEEEecCCCCeEEEEEcCCCc---------eEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          80 NKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGN---------LVKILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      .+..+.++.|.++.. .|++|+.| ..|++|-+..+.         .+..+..|...+                 +++.|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aV-----------------N~vRf   73 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAV-----------------NVVRF   73 (434)
T ss_pred             CCCceEEEEeccCcccceecccCc-cceeeeeeeecCCCCCceeEEEeecccCCccee-----------------EEEEE
Confidence            456677899999887 99999986 899999876432         234567788887                 59999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcc----------------cccccccccCCCcccccccccceEEEEECCCCCEEEEEe
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRG----------------IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC  213 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  213 (622)
                      +|+|.+||+|+.+|.|.+|....-.                ..+.+.+|           ...|..++|+|++.++++++
T Consensus        74 ~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h-----------~~diydL~Ws~d~~~l~s~s  142 (434)
T KOG1009|consen   74 SPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH-----------RDDIYDLAWSPDSNFLVSGS  142 (434)
T ss_pred             cCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccc-----------ccchhhhhccCCCceeeeee
Confidence            9999999999999999999766210                01111121           24578999999999999999


Q ss_pred             CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         214 NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       214 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.++...+. ....-++.+.     
T Consensus       143 ~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~-~m~~~~~~~~-----  216 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD-IMPAKAFNER-----  216 (434)
T ss_pred             ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee-EeeecccCCC-----
Confidence            9999999999999999999999999999999999999999999998888777655444433320 0000111110     


Q ss_pred             EEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec----CC-----eEEEEeCCC-ccEEEEEecCCC
Q psy2110         294 LVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS----KG-----KVLVLSCPA-LELKASFKASTT  363 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~-~~~~~~~~~~~~  363 (622)
                          .....+++.-++.         ......++|+|+|.++++...    .+     ..++|+-.. .++...+.....
T Consensus       217 ----e~~s~rLfhDeTl---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k  283 (434)
T KOG1009|consen  217 ----EGKSTRLFHDETL---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK  283 (434)
T ss_pred             ----CcceeeeeecCch---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc
Confidence                1111222221111         122345788999998887532    11     122332111 112222333333


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      +...+.|+|              ..|.++.            +.....         +---|-+-.+|.++  ...|+||
T Consensus       284 ~~lavr~~p--------------Vy~elrp------------~~~~~~---------~~~lpyrlvfaiAt--~~svyvy  326 (434)
T KOG1009|consen  284 PALAVRFSP--------------VYYELRP------------LSSEKF---------LFVLPYRLVFAIAT--KNSVYVY  326 (434)
T ss_pred             ceEEEEeee--------------eEEEecc------------cccccc---------ccccccceEEEEee--cceEEEe
Confidence            333333332              1233321            000000         01123334455555  4589999


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      |.++.+++.....-+-..+++++|+++|..|+..+ ||...+-.+.
T Consensus       327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence            99998888887664444599999999999999888 9988776654

>KOG0270|consensus

Probab=99.89  E-value=2.9e-21  Score=176.66  Aligned_cols=242  Identities=17%  Similarity=0.247  Sum_probs=185.7

Q ss_pred             CCCEEEEeeCCCcEEEEecCCccccc---ccc-------cccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAK---IIS-------AHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVL  220 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~i  220 (622)
                      .|+++|.|+.|..|.|||+.-...+.   .+.       ............+...|..++|+.. .+.||+|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            36799999999999999985321110   010       0000000001111234556777665 358999999999999


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      ||+.++++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.+. ...-..+++.+.|..++|.|.....++++..
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            99999999999999999999999999 667999999999999999994 3445566788999999999999999999999


Q ss_pred             CCcEEEEEecCC-ceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCC
Q psy2110         299 RHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALEL--KASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       299 ~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~  374 (622)
                      +|.++-+|+|+. +++..+..|...|.+++++..- .++++++.++.+++|++..-..  +..-.-.-+...|+++.|+-
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~  430 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV  430 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence            999999999976 8899999999999999998865 5678899999999999864432  22111112346677788875


Q ss_pred             C-EEEEEeCCCcEEEEeccc
Q psy2110         375 N-CLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       375 ~-~l~~~~~d~~i~i~d~~~  393 (622)
                      . .+++|+..+.++|||+..
T Consensus       431 a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  431 AFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             ceEEEecCccceEEEeeccc
Confidence            4 566777788899999874

>KOG2445|consensus

Probab=99.88  E-value=1.7e-20  Score=163.58  Aligned_cols=236  Identities=14%  Similarity=0.225  Sum_probs=182.4

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCccc----ccccccccCCCcccccccccceEEEEECC--CCCEEEEEeCCCeE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI----AKIISAHMHPEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRI  218 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i  218 (622)
                      +++.|.+.|+++|+|+.|++|+|||......    ....+.|.           +.|..+.|.+  -|+.+|+++.|+++
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----------~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----------GSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----------CcEEEEEecCccccceEEEEecCCce
Confidence            7999999999999999999999999755432    22333332           4578888865  48999999999999


Q ss_pred             EEEEcCC---------CceEEEeccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEE------EEEe------
Q psy2110         219 VLWDFLT---------RGIAKIISAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLTGECE------QKYR------  275 (622)
Q Consensus       219 ~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~------  275 (622)
                      .||.-..         -....++......|+.+.|.|  -|-.|++++.||.+|||+....-.+      ..+.      
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9997521         112345667788999999998  5778999999999999987643222      2222      


Q ss_pred             --CCCCeEEEEEeCCC--CeEEEEeeCC-----CcEEEEEecCC----ceeecccCCCCceEEEEEeeCC----CEEEEE
Q psy2110         276 --FPSPILKVQFHPRN--DHMFLVCPMR-----HAAVLVDTDGD----HQIVPIDEDSDLSIVASFDRRG----QHVVTG  338 (622)
Q Consensus       276 --~~~~v~~~~~~~~~--~~~~~~~~~~-----~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~  338 (622)
                        +..+..|+.|+|..  ..++++++.+     +.++||.....    ..+..+..+...|+.++|.|+-    ..|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence              44677889998743  3466666655     36788876543    4566778999999999999963    578999


Q ss_pred             ecCCeEEEEeCCC--------------------ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         339 NSKGKVLVLSCPA--------------------LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       339 ~~dg~i~i~d~~~--------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +.|| |+||.+..                    -+.+..+..|.+.|..+.|+-.|..|++.+.||.||+|...
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            9999 99999863                    12455677999999999999999999999999999999765

>KOG2445|consensus

Probab=99.88  E-value=2.4e-20  Score=162.74  Aligned_cols=247  Identities=17%  Similarity=0.364  Sum_probs=186.7

Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEe-CCCCeEEEEEe-CCCCeEEEEeeCCCcEEEEE
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG----ECEQKYR-FPSPILKVQFH-PRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~-~~~~~~~~~~~~~~~i~~~d  306 (622)
                      .+|..-|.++.|.+.|+++++|+.|++|+|||.+..    .+....+ |.+.|..+.|. |.-..++++++.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478889999999999999999999999999997543    2444444 88999999995 45566899999999999998


Q ss_pred             ecCC---------ceeecccCCCCceEEEEEeeC--CCEEEEEecCCeEEEEeCCCc------cEEEEEe-------cCC
Q psy2110         307 TDGD---------HQIVPIDEDSDLSIVASFDRR--GQHVVTGNSKGKVLVLSCPAL------ELKASFK-------AST  362 (622)
Q Consensus       307 ~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------~~~  362 (622)
                      -...         .....+......++.+.|.|.  |-.+++++.||.++||+....      .+...++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            6321         234556677888999999985  678899999999999987543      2333333       456


Q ss_pred             CCEEEEEEcCC---CCEEEEEeCC-----CcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCC-C---Ce
Q psy2110         363 TAIKSIEFARR---GNCLLVNTGD-----RLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGD-G---EY  429 (622)
Q Consensus       363 ~~i~~~~~s~~---~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spd-g---~~  429 (622)
                      .+..|+.|+|.   ..+||+|+.+     +.++||...+        ..+...+.... ....++..++|.|+ |   ..
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--------~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--------NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecC--------CcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence            77889999874   3578888765     5789998774        22122222222 33457789999996 3   46


Q ss_pred             EEEeeCCCCeEEEEECCCC--------------------eeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         430 VCAGSARQHALYIWEKSVG--------------------NLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      ||+++. || |+||++...                    +.+..+.+|.+. |..+.|+-.|..|++.+ ||.|++|..+
T Consensus       242 lAvA~k-Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  242 LAVATK-DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-VWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEeec-Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-eEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            788887 88 999998731                    234556788887 99999999999999999 9999999875


Q ss_pred             Cc
Q psy2110         489 QV  490 (622)
Q Consensus       489 ~~  490 (622)
                      -.
T Consensus       319 y~  320 (361)
T KOG2445|consen  319 YN  320 (361)
T ss_pred             hh
Confidence            43

>KOG0302|consensus

Probab=99.88  E-value=7.4e-21  Score=170.32  Aligned_cols=246  Identities=17%  Similarity=0.276  Sum_probs=185.0

Q ss_pred             eEEEEECCCC--CEEEEEeCCCeEEEEEcCC----------------CceEEEeccCCcCeeEEEEcC-CCCEEEEEeCC
Q psy2110         197 AVTCAFNKRG--TLLAVGCNDGRIVLWDFLT----------------RGIAKIISAHMHPVCSISWSR-NGYKIISASTD  257 (622)
Q Consensus       197 v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d  257 (622)
                      +..+.-++-+  .+.++-+..|.|+||++..                .+++.++.+|...-+.|+||| ....|++|.--
T Consensus       154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~  233 (440)
T KOG0302|consen  154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV  233 (440)
T ss_pred             cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence            4444444443  4666667889999999742                346778889999999999999 22358888777


Q ss_pred             CcEEEEECCCCcEEEE----EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEeeC
Q psy2110         258 NNVCIWDVLTGECEQK----YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRR  331 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~  331 (622)
                      +.|++|...++....-    ..|...|..++|+|....+|++|+.|+.|+|||++.+  ........|...|..+.|+.+
T Consensus       234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~  313 (440)
T KOG0302|consen  234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR  313 (440)
T ss_pred             cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence            8999999988764332    2278899999999999999999999999999999976  233444788899999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCC---ccEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeccccccc------CCCC
Q psy2110         332 GQHVVTGNSKGKVLVLSCPA---LELKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNA------GKDG  401 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~------~~~~  401 (622)
                      -.+|++|+.+|+++|||+++   ++++..|+.|..+|+++.|+|.. ..|++++.|..|.+||+......      ...+
T Consensus       314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~  393 (440)
T KOG0302|consen  314 EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG  393 (440)
T ss_pred             cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc
Confidence            88999999999999999985   56899999999999999999864 56778889999999999742221      0000


Q ss_pred             -CCCcceeeeccccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEE
Q psy2110         402 -DPEPIQKLQDLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWE  444 (622)
Q Consensus       402 -~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd  444 (622)
                       ..-+.+.+.-|.+...+..+.|++.-. +|++.+. +| +.||-
T Consensus       394 L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~-dG-fnVfk  436 (440)
T KOG0302|consen  394 LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI-DG-FNVFK  436 (440)
T ss_pred             hhcCCceeEEEecchhHhhhheeccCCCCeEEEecc-cc-eeEEE
Confidence             012233444455666677789988643 5555554 65 45553

>KOG0307|consensus

Probab=99.88  E-value=4.9e-22  Score=202.51  Aligned_cols=299  Identities=14%  Similarity=0.280  Sum_probs=226.7

Q ss_pred             EEEEccCCc-EEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccce
Q psy2110           6 VASFDRRGQ-HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW   84 (622)
Q Consensus         6 ~~~fspdg~-~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (622)
                      .++|||++. +||+|...|.+   |.              +-+.+.++.+|.+....      .....+....+.....+
T Consensus        11 ~~awSp~~~~~laagt~aq~~---D~--------------sfst~~slEifeld~~~------~~~dlk~~~s~~s~~rF   67 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQF---DA--------------SFSTSASLEIFELDFSD------ESSDLKPVGSLQSSNRF   67 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhcc---cc--------------ccccccccceeeecccC------ccccccccccccccccc
Confidence            578999998 78887654432   21              22345555565543111      11123344445556667


Q ss_pred             eEEEEcCCCCE---EEEecCCCCeEEEEEcCC---C---ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-
Q psy2110          85 KKCCFSGDGEY---VCAGSARQHALYIWEKSV---G---NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-  154 (622)
Q Consensus        85 ~~~~~sp~~~~---l~~~~~~~~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-  154 (622)
                      +.++|.+.|..   |++|+.+||.|.+||...   +   ..+.++..|.+.|                 ..+.|++... 
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V-----------------~gLDfN~~q~n  130 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPV-----------------LGLDFNPFQGN  130 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCce-----------------eeeeccccCCc
Confidence            78999998887   455555679999999864   2   3556778899888                 4899999766 


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      +||+|+.||.|.|||+..-+.-......         ...+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+.
T Consensus       131 lLASGa~~geI~iWDlnn~~tP~~~~~~---------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls  201 (1049)
T KOG0307|consen  131 LLASGADDGEILIWDLNKPETPFTPGSQ---------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS  201 (1049)
T ss_pred             eeeccCCCCcEEEeccCCcCCCCCCCCC---------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence            9999999999999999874443333211         122568999999864 467888889999999999888777776


Q ss_pred             cCCc--CeeEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         234 AHMH--PVCSISWSRNG-YKIISASTDN---NVCIWDVLTG-ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       234 ~~~~--~v~~~~~s~~~-~~l~s~~~d~---~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      .|.+  .+..++|+|+. ..|++++.|.   .|.+||++.. ..++.++ |...|.++.|++.+..++++++.|+.+.+|
T Consensus       202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w  281 (1049)
T KOG0307|consen  202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW  281 (1049)
T ss_pred             cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence            5544  47789999965 4677776653   5999998854 4566665 889999999999999999999999999999


Q ss_pred             EecCCceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCcc
Q psy2110         306 DTDGDHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +..+++.+..+......+..+.|.|... .+++++-+|.|.||.+....
T Consensus       282 N~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  282 NPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999999999999999999999775 78889999999999987543

>KOG0302|consensus

Probab=99.87  E-value=1.1e-20  Score=169.27  Aligned_cols=193  Identities=21%  Similarity=0.356  Sum_probs=148.6

Q ss_pred             eeEEEEcCCCC-EEEEecCCCCeEEEEEcCCCceE---EEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEE
Q psy2110          84 WKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLV---KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAV  158 (622)
Q Consensus        84 ~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s  158 (622)
                      -+.++|||-.. .|++|... +.|++|...+|.-.   .-|.+|...|                 -.++|||.. ..|++
T Consensus       214 Gy~LdWSp~~~g~LlsGDc~-~~I~lw~~~~g~W~vd~~Pf~gH~~SV-----------------EDLqWSptE~~vfaS  275 (440)
T KOG0302|consen  214 GYGLDWSPIKTGRLLSGDCV-KGIHLWEPSTGSWKVDQRPFTGHTKSV-----------------EDLQWSPTEDGVFAS  275 (440)
T ss_pred             ceeeecccccccccccCccc-cceEeeeeccCceeecCccccccccch-----------------hhhccCCccCceEEe
Confidence            35799999432 36676654 78999999887543   3466788887                 599999975 48999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceEEEeccC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAKIISAH  235 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~  235 (622)
                      ||.||+|+|||++.+.....+....+.         +.|..+.|+.+-.+||+|+.+|+++|||++.   ++++..++-|
T Consensus       276 cS~DgsIrIWDiRs~~~~~~~~~kAh~---------sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H  346 (440)
T KOG0302|consen  276 CSCDGSIRIWDIRSGPKKAAVSTKAHN---------SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH  346 (440)
T ss_pred             eecCceEEEEEecCCCccceeEeeccC---------CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec
Confidence            999999999999998443333222222         4589999999988999999999999999974   5678899999


Q ss_pred             CcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE-----------------EEEEe--CCCCeEEEEEeCCCCeEEEE
Q psy2110         236 MHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGEC-----------------EQKYR--FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       236 ~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-----------------~~~~~--~~~~v~~~~~~~~~~~~~~~  295 (622)
                      ..+|+++.|+| +...|++++.|.+|.|||+....-                 ...|-  ....+..+.|+++-+.++++
T Consensus       347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence            99999999999 556788889999999999853210                 11222  34567889999998888888


Q ss_pred             eeCCCcEE
Q psy2110         296 CPMRHAAV  303 (622)
Q Consensus       296 ~~~~~~i~  303 (622)
                      .+.+|.-.
T Consensus       427 Ta~dGfnV  434 (440)
T KOG0302|consen  427 TAIDGFNV  434 (440)
T ss_pred             ecccceeE
Confidence            88877433

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=1.2e-18  Score=170.61  Aligned_cols=269  Identities=16%  Similarity=0.169  Sum_probs=181.9

Q ss_pred             EEeeCCCcEEEEecCCc-c--cccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCC-Cce--E
Q psy2110         157 AVGCNDGRIVLWDFLTR-G--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLT-RGI--A  229 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~-~~~--~  229 (622)
                      ++...++.|++|++.+. +  .+..+...            .....++++|++++|++++ .++.|.+|++.. +..  .
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~------------~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~   73 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVP------------GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA   73 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecC------------CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe
Confidence            34467899999999643 2  22222211            2346789999999987765 478899999973 332  2


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC-C---cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLT-G---ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVL  304 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~  304 (622)
                      .... ..+....++++|++++|++++. ++.|.+|++.+ +   +....+........++++|+++.++++...++.|.+
T Consensus        74 ~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         74 AESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             eeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            2222 2345678999999999888775 78999999974 2   233333344456778999999988888888999999


Q ss_pred             EEecCCceeec-----cc-CCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCC--cc--EEEEEecC------CCCEEE
Q psy2110         305 VDTDGDHQIVP-----ID-EDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPA--LE--LKASFKAS------TTAIKS  367 (622)
Q Consensus       305 ~d~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~------~~~i~~  367 (622)
                      ||+.+...+..     .. ........++|+|+|+++++++. ++.|.+|++..  ++  .+..+...      ......
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  232 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD  232 (330)
T ss_pred             EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence            99976432211     01 12334567899999999988876 89999999873  33  33333321      112346


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         368 IEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      +.++|++++|+++.. ++.|.+|++..        ...................+.|+|||++|+++...+++|.+|++.
T Consensus       233 i~~~pdg~~lyv~~~~~~~I~v~~i~~--------~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        233 IHITPDGRHLYACDRTASLISVFSVSE--------DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEeC--------CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            889999999998854 78899999863        111111111111112234679999999999988768899999874

>KOG1538|consensus

Probab=99.87  E-value=3.1e-20  Score=177.95  Aligned_cols=271  Identities=19%  Similarity=0.270  Sum_probs=208.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .|..++|-|||..|+.+. +..+.+||.+.|..+.++++|...|++++|+.||+.+++|+.|..|.+|.-. -+-+-.+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence            378899999999988775 5689999999999999999999999999999999999999999999999843 34455667


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      |...|.++.|+|-... +++|+-+ ..-+|....+...  .......+.+++|..||++++.|-.+|+|.+-+- +++..
T Consensus        92 H~D~IQCMsFNP~~h~-LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek  166 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQ-LASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEK  166 (1081)
T ss_pred             cCCeeeEeecCchHHH-hhhcchh-hccccChhhhhHH--hhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcc
Confidence            9999999999997764 4444432 2446665433221  1223456778999999999999999999999864 44444


Q ss_pred             EEEe---cCCCCEEEEEEcCCC-----CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         356 ASFK---ASTTAIKSIEFARRG-----NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       356 ~~~~---~~~~~i~~~~~s~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      ..++   +.+.+|.+++|+|..     ..+++.....++.+|.+...          .+.+-+..  ...-.++.+-++|
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----------~Igk~r~L--~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----------QIGKDRAL--NFDPCCISYFTNG  234 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----------eecccccC--CCCchhheeccCC
Confidence            4444   578899999999964     36778888888888888731          11111111  1112456888999


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      .|+..|+. ++.+.+|-. .|-.+.++..... .|..++.+|+++.++.|. ||+|..|++-
T Consensus       235 Ey~LiGGs-dk~L~~fTR-~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  235 EYILLGGS-DKQLSLFTR-DGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cEEEEccC-CCceEEEee-cCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999998 888999975 4767777765444 499999999999999999 9999999874

>KOG1009|consensus

Probab=99.87  E-value=1.4e-19  Score=163.98  Aligned_cols=298  Identities=17%  Similarity=0.272  Sum_probs=194.8

Q ss_pred             CcceEEEEccCCc-EEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhh-c
Q psy2110           2 DLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-V   79 (622)
Q Consensus         2 ~~V~~~~fspdg~-~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~   79 (622)
                      +.|.++.|.++.. .||||+.|..|++|.+...+-          +.++..|...                    ..+ .
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~----------~~~~~~V~y~--------------------s~Ls~   63 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP----------GGGDMKVEYL--------------------SSLSR   63 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCC----------CCCceeEEEe--------------------ecccC
Confidence            5678888888776 899999999999997644321          1111222221                    112 3


Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--------C--------CceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--------V--------GNLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                      |+..++++.|+|+|..||+|+. +|.|.+|-..        +        -...+.+++|...++               
T Consensus        64 H~~aVN~vRf~p~gelLASg~D-~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy---------------  127 (434)
T KOG1009|consen   64 HTRAVNVVRFSPDGELLASGGD-GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY---------------  127 (434)
T ss_pred             CcceeEEEEEcCCcCeeeecCC-CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh---------------
Confidence            5567889999999999999995 5999999765        2        123456778888874               


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                        .++|+|++.++++++.|..+++||+..|.....+..|.+           .+..++|.|-++++++-+.|...+.+.+
T Consensus       128 --dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----------yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  128 --DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----------YVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             --hhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-----------ccceeecchhhhhhhhhccCcccceeee
Confidence              999999999999999999999999999999988887763           4788999999999999888887777776


Q ss_pred             CCCceEEEecc-------------------CC----cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe
Q psy2110         224 LTRGIAKIISA-------------------HM----HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPI  280 (622)
Q Consensus       224 ~~~~~~~~~~~-------------------~~----~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v  280 (622)
                      ...+.++....                   |.    .....++|+|+|..|++.+  |.+   ....+..          
T Consensus       195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa--g~~---~~g~~~~----------  259 (434)
T KOG1009|consen  195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA--GLF---KVGGGVF----------  259 (434)
T ss_pred             eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc--cee---eeCCcee----------
Confidence            54333222110                   00    1122344555555444432  111   1000000          


Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCCCceEEEEEe------------------eCCCEEEEEecC
Q psy2110         281 LKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVASFD------------------RRGQHVVTGNSK  341 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~d  341 (622)
                                        -+..++++-. ..++...+.........+.++                  |-+-.+++++.+
T Consensus       260 ------------------~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~  321 (434)
T KOG1009|consen  260 ------------------RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN  321 (434)
T ss_pred             ------------------eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc
Confidence                              0011122111 011222222222222222221                  233445566555


Q ss_pred             CeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         342 GKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                       .|++||.++..++.... .|-..|+.++|+++|..|+..+.||...+..++
T Consensus       322 -svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  322 -SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             -eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence             69999999888776654 688999999999999999999999998877665

>KOG1034|consensus

Probab=99.86  E-value=2.2e-19  Score=158.20  Aligned_cols=311  Identities=15%  Similarity=0.258  Sum_probs=216.7

Q ss_pred             cceeEEEEcC-----CCCEEEEecCCCCeEEEEEcCCCceEEEEe---c--cCcceeEEEEeecCccccccceeEEEEcC
Q psy2110          82 TMWKKCCFSG-----DGEYVCAGSARQHALYIWEKSVGNLVKILH---G--TKGELLLDVVEFDGALDCISLAVTCAFNK  151 (622)
Q Consensus        82 ~~~~~~~~sp-----~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~~~~v~~~~~s~  151 (622)
                      ..+..++|++     .-+.+|+.+.  +.+.+|......-++.++   .  |....                 ..++|+-
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG~--~rvtiy~c~~d~~ir~lq~y~D~d~~Esf-----------------ytcsw~y   99 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVGG--NRVTIYECPGDGGIRLLQSYADEDHDESF-----------------YTCSWSY   99 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeCC--cEEEEEEECCccceeeeeeccCCCCCcce-----------------EEEEEEe
Confidence            3445677763     2345566653  689999876443233222   2  33333                 3667765


Q ss_pred             C----CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Q psy2110         152 R----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTR  226 (622)
Q Consensus       152 d----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~  226 (622)
                      |    ..+||.|+.-|.|+|.|+.++++...+.+|..           .|..+.+.|+. +++++++.|..|++|++.+.
T Consensus       100 d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----------sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen  100 DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----------SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             cCCCCCeeEEeecceeEEEEEecchhhhccceeccCc-----------cchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            4    34899999999999999999999999888864           48889999975 68899999999999999999


Q ss_pred             ceEEEe---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         227 GIAKII---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       227 ~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .++..+   .+|.+.|.++.|+.+|.+|++++.|.+|++|++...+....+..     ++.|+|++...-+   ......
T Consensus       169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pf---pt~~~~  240 (385)
T KOG1034|consen  169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPF---PTPKTH  240 (385)
T ss_pred             eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcC---Cccccc
Confidence            998876   47999999999999999999999999999999986554333221     1344554421000   000001


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-c-------------cEEEEEecCCCCEEEE-
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-L-------------ELKASFKASTTAIKSI-  368 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~-------------~~~~~~~~~~~~i~~~-  368 (622)
                      +.+.      .+...|...|.|+.|-  |.++++-+.++.|..|.... .             ..+..+......|.-+ 
T Consensus       241 fp~f------st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir  312 (385)
T KOG1034|consen  241 FPDF------STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR  312 (385)
T ss_pred             cccc------cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence            1111      0223456666666554  57888888888999998721 1             1233444444455555 


Q ss_pred             -EEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         369 -EFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       369 -~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                       +|.|-++.||.+...|.|++||++.       .++....++........+...+||.||..|+.... +++|.-||.-
T Consensus       313 f~~d~~~~~la~gnq~g~v~vwdL~~-------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd-d~~Vwrwdrv  383 (385)
T KOG1034|consen  313 FAFDPWQKMLALGNQSGKVYVWDLDN-------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD-DGTVWRWDRV  383 (385)
T ss_pred             EeecHHHHHHhhccCCCcEEEEECCC-------CCCccCceEEeccccceeeeeeecccCcEEEEEeC-CCcEEEEEee
Confidence             4567788999999999999999994       23334455666666677888899999999999986 9999999853

>KOG0321|consensus

Probab=99.86  E-value=6.5e-20  Score=175.19  Aligned_cols=280  Identities=17%  Similarity=0.192  Sum_probs=195.6

Q ss_pred             EEEEcC---CCCEEEEeeCCCcEEEEecCCcccc------cccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC
Q psy2110         146 TCAFNK---RGTLLAVGCNDGRIVLWDFLTRGIA------KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  216 (622)
Q Consensus       146 ~~~~s~---d~~~l~s~~~dg~i~vw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  216 (622)
                      +..|++   ..+.||.+..||.|.++|.......      .....|.           ..|..+.|-|....|++++.|.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~-----------nAifDl~wapge~~lVsasGDs  122 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK-----------NAIFDLKWAPGESLLVSASGDS  122 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc-----------ceeEeeccCCCceeEEEccCCc
Confidence            456655   3458999999999999998764322      2222232           4689999999667899999999


Q ss_pred             eEEEEEcCCCceEEE--eccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc--------------------EEE-
Q psy2110         217 RIVLWDFLTRGIAKI--ISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE--------------------CEQ-  272 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~--------------------~~~-  272 (622)
                      ++++||+++.++...  +.+|.+.|.+++|.+ +...|++|+.||.|.|||++-..                    ..+ 
T Consensus       123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            999999999888766  889999999999999 45678999999999999986422                    000 


Q ss_pred             ---EEe----CCCCeEE---EEEeCCCCeEEEEeeCCCcEEEEEecCCceee--------cccCC---CCceEEEEEeeC
Q psy2110         273 ---KYR----FPSPILK---VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV--------PIDED---SDLSIVASFDRR  331 (622)
Q Consensus       273 ---~~~----~~~~v~~---~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------~~~~~---~~~~~~~~~~~~  331 (622)
                         .+.    +...+.+   +.+..|...++.++..|+.|++||++......        .+..+   ...+.++..+..
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence               000    1223444   55556666555555669999999998754322        22223   345677888888


Q ss_pred             CCEEEEEecCCeEEEEeCCCcc--EEEEEecCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         332 GQHVVTGNSKGKVLVLSCPALE--LKASFKASTTA--IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      |.++++.+.|+.|++|++.+..  ++..+.++...  -..-..+|++.++++++.|...++|.+...        ..+..
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~--------e~~~~  354 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP--------EAPPA  354 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc--------cCChh
Confidence            9999999999999999997643  34444433211  112346899999999999999999999841        12222


Q ss_pred             eeeccccceeeeeEEEcC--CCCeEEEeeCCCCeEEEEECCCC
Q psy2110         408 KLQDLVNKTMWKKCCFSG--DGEYVCAGSARQHALYIWEKSVG  448 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~d~~i~iwd~~~~  448 (622)
                      .+.++.  ..+.+++|.|  .+. +++++ +|..++||++..+
T Consensus       355 ~l~Ght--~eVt~V~w~pS~~t~-v~TcS-dD~~~kiW~l~~~  393 (720)
T KOG0321|consen  355 LLLGHT--REVTTVRWLPSATTP-VATCS-DDFRVKIWRLSNG  393 (720)
T ss_pred             hhhCcc--eEEEEEeeccccCCC-ceeec-cCcceEEEeccCc
Confidence            333322  3456677776  344 44555 5999999998654

>KOG4497|consensus

Probab=99.86  E-value=5.5e-20  Score=161.82  Aligned_cols=320  Identities=18%  Similarity=0.251  Sum_probs=220.7

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFL  224 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~  224 (622)
                      -+.|||+|+++|+++.- .+.|-|.++-+..+.+..            ...|.-+.|..|..+++++ ..++.|.+|++.
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c------------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC------------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH------------HHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence            46899999999999875 788888887666555433            2346778888888766554 568899999999


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc--
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIIS-ASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA--  301 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--  301 (622)
                      ..+-...+.....++.+++|||||+.|+. ...+-.|.+|.+.+.+....-.....+..++|+|+|+...+....|..  
T Consensus        80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy  159 (447)
T KOG4497|consen   80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY  159 (447)
T ss_pred             cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence            98888888888899999999999976654 555889999999988776665566678999999999965555444321  


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +.+..-..-..+..+....-..+.+.|+|||..+++         ||..-.-.+..+. -.-.+..++|+|.+++|++|+
T Consensus       160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGs  229 (447)
T KOG4497|consen  160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGS  229 (447)
T ss_pred             HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeec
Confidence            112111222333444555556678899999988765         3321111111111 124577899999999999999


Q ss_pred             CCCcEEEEecccccccCCCC---------------------------------------------------CCCcceeee
Q psy2110         382 GDRLIRVYNHQEVLNAGKDG---------------------------------------------------DPEPIQKLQ  410 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~---------------------------------------------------~~~~~~~~~  410 (622)
                      .|+.+|+.+.-+.+..+...                                                   .+..+..++
T Consensus       230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk  309 (447)
T KOG4497|consen  230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK  309 (447)
T ss_pred             cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence            99999886643211110000                                                   001111111


Q ss_pred             c----cccceeeeeEEEcCCCCeEEEeeCC-CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110         411 D----LVNKTMWKKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSL  484 (622)
Q Consensus       411 ~----~~~~~~~~~~~~spdg~~l~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~i  484 (622)
                      .    ......+..++||+|..|+++-... -+.+.+||+...++...+...+  +|....|+|..+.|+.+. ...+++
T Consensus       310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--piraf~WdP~~prL~vctg~srLY~  387 (447)
T KOG4497|consen  310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--PIRAFEWDPGRPRLVVCTGKSRLYF  387 (447)
T ss_pred             CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--ceeEEEeCCCCceEEEEcCCceEEE
Confidence            0    1112334567999999999987631 4679999998877666665433  399999999999888877 778999


Q ss_pred             eecCCc
Q psy2110         485 WAQNQV  490 (622)
Q Consensus       485 w~~~~~  490 (622)
                      |.+.+.
T Consensus       388 W~psg~  393 (447)
T KOG4497|consen  388 WAPSGP  393 (447)
T ss_pred             EcCCCc
Confidence            998753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.86  E-value=4.5e-18  Score=165.27  Aligned_cols=322  Identities=13%  Similarity=0.105  Sum_probs=214.6

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR  173 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~  173 (622)
                      +++++...+++.|.|.|..+.+.+..+.......                 ..+.|+|||+++++++.||.|.++|+.++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h-----------------~~~~~s~Dgr~~yv~~rdg~vsviD~~~~   68 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPH-----------------AGLKFSPDGRYLYVANRDGTVSVIDLATG   68 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEE-----------------EEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCce-----------------eEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence            3444443345899999999999999998654432                 26789999999999999999999999999


Q ss_pred             ccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEEEeccC-------CcCeeEEEEc
Q psy2110         174 GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAH-------MHPVCSISWS  245 (622)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s  245 (622)
                      +.+..+....            ....+++++||++++++. ..+.+.++|..+.+.++.+...       ...+.++..+
T Consensus        69 ~~v~~i~~G~------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   69 KVVATIKVGG------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             SEEEEEE-SS------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             cEEEEEecCC------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            9888876553            357899999999998775 5899999999999988877643       3467788888


Q ss_pred             CCCCEEEEEeCC-CcEEEEECCCCcEE--EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC----
Q psy2110         246 RNGYKIISASTD-NNVCIWDVLTGECE--QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE----  318 (622)
Q Consensus       246 ~~~~~l~s~~~d-~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----  318 (622)
                      +....++..-.| +.|.+.|....+.+  ..+..........|+|++++++++....+.+.++|..+...+..+..    
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            888866666555 78888898766543  44556677888999999998888888888999999988766554332    


Q ss_pred             CCCceEE-------EEE--eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE----eCCCc
Q psy2110         319 DSDLSIV-------ASF--DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN----TGDRL  385 (622)
Q Consensus       319 ~~~~~~~-------~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~d~~  385 (622)
                      |......       ..|  ...+...++.-....+.+|+..+.+.++++...... .-+..+|+++++.+.    ...+.
T Consensus       217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~  295 (369)
T PF02239_consen  217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT  295 (369)
T ss_dssp             EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-
T ss_pred             cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce
Confidence            1111111       112  222333323333345677899999999999987777 678889999999998    34578


Q ss_pred             EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC-eEEEEECCCCeeEEEEe
Q psy2110         386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH-ALYIWEKSVGNLVKILH  455 (622)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~-~i~iwd~~~~~~~~~~~  455 (622)
                      |.++|..+         .+.+..+.... ...+..+.|++||+++..+..+.+ .|.|||..+.+.++.+.
T Consensus       296 v~viD~~t---------l~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  296 VQVIDKKT---------LKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEEECCG---------TEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEEECcC---------cceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            99999984         22233332111 122567899999998877765444 89999999999998887

...

>KOG1188|consensus

Probab=99.85  E-value=5.5e-20  Score=162.89  Aligned_cols=273  Identities=15%  Similarity=0.237  Sum_probs=199.5

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEeeCCCcEEEEecC
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRIVLWDFL  171 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~vw~~~  171 (622)
                      ..+|++.+. |.|++||..+++.+..++++...++                 .++|..  ....+.+|+.||+|++||++
T Consensus        41 ~~vav~lSn-gsv~lyd~~tg~~l~~fk~~~~~~N-----------------~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   41 TAVAVSLSN-GSVRLYDKGTGQLLEEFKGPPATTN-----------------GVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eeEEEEecC-CeEEEEeccchhhhheecCCCCccc-----------------ceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            456666655 9999999999999999999998884                 778876  46689999999999999999


Q ss_pred             CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----CCeEEEEEcCCCce-EEEe-ccCCcCeeEEEEc
Q psy2110         172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DGRIVLWDFLTRGI-AKII-SAHMHPVCSISWS  245 (622)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~s  245 (622)
                      .......+.....+        .....+++.+-.++++++|..    +-.+.+||++..+. ++.+ ..|...|++++|+
T Consensus       103 s~~e~a~~~~~~~~--------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen  103 SQAESARISWTQQS--------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             cchhhhheeccCCC--------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence            87666555433322        023567777777888888753    67799999987665 5444 5799999999999


Q ss_pred             C-CCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC-
Q psy2110         246 R-NGYKIISASTDNNVCIWDVLTGE----CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED-  319 (622)
Q Consensus       246 ~-~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-  319 (622)
                      | +.+.|++|+.||.|.++|++...    .+..+.+.+.|..+.|+.++-.-+.+-+......+|++..+.....+... 
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc
Confidence            9 67899999999999999997543    35566788889999999988555777788889999999876544333221 


Q ss_pred             -----------CCceEEEEEeeCCCEEEEEec-CCeEEEEeC---CC---ccEEEEEec-CCCCEEEEEEcCCCCEEEEE
Q psy2110         320 -----------SDLSIVASFDRRGQHVVTGNS-KGKVLVLSC---PA---LELKASFKA-STTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       320 -----------~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~---~~---~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~  380 (622)
                                 ...+.......+....+.++. -|...++-+   .+   .+.+..+++ |...|+++.|...+..+.+|
T Consensus       255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG  334 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTG  334 (376)
T ss_pred             chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeecc
Confidence                       111111111223344444433 444444433   22   334556665 67778999999889999999


Q ss_pred             eCCCcEEEEecc
Q psy2110         381 TGDRLIRVYNHQ  392 (622)
Q Consensus       381 ~~d~~i~i~d~~  392 (622)
                      +.||.+.+|...
T Consensus       335 GEDG~l~~Wk~~  346 (376)
T KOG1188|consen  335 GEDGLLQAWKVE  346 (376)
T ss_pred             CCCceEEEEecC
Confidence            999999999854

>KOG4227|consensus

Probab=99.85  E-value=2e-19  Score=161.85  Aligned_cols=311  Identities=14%  Similarity=0.171  Sum_probs=219.7

Q ss_pred             EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc------ccccccccccCCCccccc
Q psy2110         118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR------GIAKIISAHMHPEFDGAL  191 (622)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~~~~  191 (622)
                      +.+.+|.+.|                 .++.|+.++++|++|+.|..+++|++...      +.+.....+ +       
T Consensus        50 KD~~~H~GCi-----------------NAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~-H-------  104 (609)
T KOG4227|consen   50 KDVREHTGCI-----------------NALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP-H-------  104 (609)
T ss_pred             hhhhhhcccc-----------------ceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc-c-------
Confidence            4456777777                 49999999999999999999999998653      122222111 1       


Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc--CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         192 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA--HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       192 ~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                        .+.|.|++|...++.+++|..+++|...|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus       105 --~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  105 --RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             --ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence              15799999999999999999999999999999887766642  34589999999988899999999999999998654


Q ss_pred             ----EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-eeccc------CCCCceEEEEEeeCCCEEEEE
Q psy2110         270 ----CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-IVPID------EDSDLSIVASFDRRGQHVVTG  338 (622)
Q Consensus       270 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~l~~~  338 (622)
                          +...-..+.....+.|+|..+.++++.+..+.+-+||.+.... +....      .....-....|+|+|..+++-
T Consensus       183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence                2333336677889999999999999999999999999986532 22111      111122457899999888876


Q ss_pred             ecCCeEEEEeCCCccE-EEEEecC------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec
Q psy2110         339 NSKGKVLVLSCPALEL-KASFKAS------TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD  411 (622)
Q Consensus       339 ~~dg~i~i~d~~~~~~-~~~~~~~------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  411 (622)
                      -....-.+||+-+..+ +.++...      ...+.+++|..+.. +++|+.+-.|++|.+......         ..+. 
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds---------~G~~-  331 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDS---------YGFT-  331 (609)
T ss_pred             hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccc---------cCcc-
Confidence            5555556777766443 3333311      13466777776544 888888888999988731000         0000 


Q ss_pred             cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                                .+-.|..-+      -..|.|     .+.+.+|+||..- ++.|.|+|...+|++.+ ...++||..-
T Consensus       332 ----------~IG~~~~~~------~~~~~i-----~~~~~VLrGHRSv-~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  332 ----------QIGHDEEEM------PSEIFI-----EKELTVLRGHRSV-PNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ----------ccCcchhhC------chhhee-----cceeEEEeccccc-ccceeecCCcceEeccchhhheeccccc
Confidence                      000000000      001111     2246778999975 99999999999999999 9999999863

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=6.5e-18  Score=165.38  Aligned_cols=269  Identities=12%  Similarity=0.189  Sum_probs=179.5

Q ss_pred             EEEEecCCCCeEEEEEcCC-Cc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee-CCCcEEEEec
Q psy2110          95 YVCAGSARQHALYIWEKSV-GN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDF  170 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~  170 (622)
                      ++.++...++.|.+|++.+ ++  .+..+..... .                 ..++++|++++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~-~-----------------~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQ-V-----------------QPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCC-C-----------------ccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3444444469999999964 33  3344443222 2                 4889999999887664 5788999998


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCc----eEEEeccCCcCeeEEEEc
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRG----IAKIISAHMHPVCSISWS  245 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s  245 (622)
                      .....+.........         .....++|+|+|++|++++. ++.|.+|++.+..    ....+. +.....+++++
T Consensus        65 ~~~g~l~~~~~~~~~---------~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~  134 (330)
T PRK11028         65 ADDGALTFAAESPLP---------GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID  134 (330)
T ss_pred             CCCCceEEeeeecCC---------CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence            732112111111100         12467899999998888764 7899999997432    222232 22346778999


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCcEEE-------EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC----cee
Q psy2110         246 RNGYKIISAS-TDNNVCIWDVLTGECEQ-------KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD----HQI  313 (622)
Q Consensus       246 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~  313 (622)
                      |+++++++++ .++.|.+||+.+...+.       ..........+.|+|+++.++++...++.+.+|++...    ..+
T Consensus       135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence            9999886655 46899999997633221       12234556789999999988888777999999999732    122


Q ss_pred             ecccC------CCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCcc----EEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q psy2110         314 VPIDE------DSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPALE----LKASFKASTTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       314 ~~~~~------~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      ..+..      .......+.++|+|++++++.. ++.|.+|++....    .+..... ......++++|+|++|+++..
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence            22211      1122335889999999999864 6899999985432    2222222 134567899999999998875


Q ss_pred             -CCcEEEEecc
Q psy2110         383 -DRLIRVYNHQ  392 (622)
Q Consensus       383 -d~~i~i~d~~  392 (622)
                       +++|.+|+++
T Consensus       294 ~~~~v~v~~~~  304 (330)
T PRK11028        294 KSHHISVYEID  304 (330)
T ss_pred             cCCcEEEEEEc
Confidence             8899999886

>KOG0307|consensus

Probab=99.85  E-value=1e-20  Score=193.06  Aligned_cols=238  Identities=20%  Similarity=0.267  Sum_probs=194.7

Q ss_pred             eEEEEcCCCCE----EEEeeCCCcEEEEecCC---c---ccccccccccCCCcccccccccceEEEEECCCCC-EEEEEe
Q psy2110         145 VTCAFNKRGTL----LAVGCNDGRIVLWDFLT---R---GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGC  213 (622)
Q Consensus       145 ~~~~~s~d~~~----l~s~~~dg~i~vw~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~  213 (622)
                      +.++|.+.|..    ||.|..||.|.+|+...   +   ..+.....|.           +.|..+.|++... +||+|+
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----------G~V~gLDfN~~q~nlLASGa  136 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-----------GPVLGLDFNPFQGNLLASGA  136 (1049)
T ss_pred             eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC-----------CceeeeeccccCCceeeccC
Confidence            58999987765    88999999999999765   2   1223333333           4589999999765 999999


Q ss_pred             CCCeEEEEEcCCCceEEEe--ccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCC---CCeEEEEEeC
Q psy2110         214 NDGRIVLWDFLTRGIAKII--SAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFP---SPILKVQFHP  287 (622)
Q Consensus       214 ~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~  287 (622)
                      .+|.|.|||+...+.-...  ......|.+++|+. ..+.|++++.+|.+.|||++..+.+-.+...   ..+..++|+|
T Consensus       137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP  216 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP  216 (1049)
T ss_pred             CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence            9999999999875443333  12457899999987 4457888888999999999988777666533   3478999999


Q ss_pred             CCCeEEEEeeCCC---cEEEEEecC-CceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         288 RNDHMFLVCPMRH---AAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       288 ~~~~~~~~~~~~~---~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      ++...+++++.|.   .|.+||+|. ..++..+..|...+.++.|++.+ +++++++.|+.|.+|+.++++.+..+....
T Consensus       217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC
Confidence            9987777776655   589999985 45677778999999999999977 888999999999999999999999999988


Q ss_pred             CCEEEEEEcCCCC-EEEEEeCCCcEEEEeccc
Q psy2110         363 TAIKSIEFARRGN-CLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       363 ~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~  393 (622)
                      ..+..+.|+|... .+++++-||.|.||.+..
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            9999999999876 677788899999999984

>KOG1188|consensus

Probab=99.85  E-value=1.3e-19  Score=160.64  Aligned_cols=279  Identities=15%  Similarity=0.215  Sum_probs=196.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe---CC-CCe
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLTGECEQKYR---FP-SPI  280 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~-~~v  280 (622)
                      ..+|++...|.|++||..+++.+..++++...++.+.|..  ....+.+++.||+|++||+++......+.   ++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688899999999999999999999999999999999977  46689999999999999999876655554   22 355


Q ss_pred             EEEEEeCCCCeEEEEee----CCCcEEEEEecCCce-e-ecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCcc
Q psy2110         281 LKVQFHPRNDHMFLVCP----MRHAAVLVDTDGDHQ-I-VPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      .+++..-.+ ++++++.    .+..+.+||.+..++ + .-...|.+.|+++.|+|.. +.|++|+.||-|.+||+....
T Consensus       121 ~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            555554433 3555553    356799999998765 3 3456789999999999964 789999999999999987543


Q ss_pred             ---EEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcc-eeeeccccceeeeeEEEcC-CC
Q psy2110         354 ---LKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI-QKLQDLVNKTMWKKCCFSG-DG  427 (622)
Q Consensus       354 ---~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp-dg  427 (622)
                         .+...-.+...|..+.|..++ +.+.+-+...+..+|+++..........+... .......+...+.. +.+| ++
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~  278 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDK  278 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCc
Confidence               222333567789999998877 45888889999999999853322111111000 00000001111111 3334 44


Q ss_pred             CeEEEeeCCCC--eEEEEE-CC---CCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         428 EYVCAGSARQH--ALYIWE-KS---VGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       428 ~~l~~~~~~d~--~i~iwd-~~---~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ...+.++.+-+  .+.... ..   .++.+..+.+++...|+++.|...+.+++||+ ||.+.+|..
T Consensus       279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            55555544233  333333 22   34567788887777799999999999999999 999999986

>KOG1334|consensus

Probab=99.84  E-value=3.2e-20  Score=171.82  Aligned_cols=293  Identities=22%  Similarity=0.372  Sum_probs=228.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-ccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCC-CcE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLT-GEC  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~-~~~  270 (622)
                      +.|..+.|+..|..|++|+.|..|.+||...+.....+ .+|...|....|-|  +.+.|++++.||++++=.+.. +.+
T Consensus       143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            34788999999999999999999999999988766555 47988999888988  456899999999999877653 333


Q ss_pred             E---EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc---cCCCC---ceEEEEEeeCCC-EEEEEec
Q psy2110         271 E---QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI---DEDSD---LSIVASFDRRGQ-HVVTGNS  340 (622)
Q Consensus       271 ~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~---~~~~~~~~~~~~-~l~~~~~  340 (622)
                      .   +...|.++|..++.-|+..+-|.+++.|+.+.-+|++...+...+   ..+..   ....++.+|... .+++|+.
T Consensus       223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~  302 (559)
T KOG1334|consen  223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS  302 (559)
T ss_pred             ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence            3   233488999999999999999999999999999999876443222   22222   456778888665 7899999


Q ss_pred             CCeEEEEeCCCccE------EEEEe------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC-C--CCc
Q psy2110         341 KGKVLVLSCPALEL------KASFK------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG-D--PEP  405 (622)
Q Consensus       341 dg~i~i~d~~~~~~------~~~~~------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~  405 (622)
                      |..+++||.+....      +.++.      .....|++++|+.++.-|+++-.|-.|+++.-.......... .  ...
T Consensus       303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~  382 (559)
T KOG1334|consen  303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY  382 (559)
T ss_pred             hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence            99999999875322      22332      234569999999888888888889999999544211100000 0  122


Q ss_pred             cee-eeccccceeeeeE-EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcE
Q psy2110         406 IQK-LQDLVNKTMWKKC-CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVV  482 (622)
Q Consensus       406 ~~~-~~~~~~~~~~~~~-~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v  482 (622)
                      +.. +++|.+...+..+ -|-|...|+++|+. -|.|+||+..++++++.+.+... .|+|+.=||--++||+++ |..|
T Consensus       383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD-CGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DV  460 (559)
T KOG1334|consen  383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD-CGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDV  460 (559)
T ss_pred             cchhhcccccccccceeeeccCccceEEecCc-cceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccce
Confidence            233 7788888888877 67889999999995 78999999999999999998776 599999999999999999 9999


Q ss_pred             EEeecCC
Q psy2110         483 SLWAQNQ  489 (622)
Q Consensus       483 ~iw~~~~  489 (622)
                      +||...+
T Consensus       461 KIWTP~~  467 (559)
T KOG1334|consen  461 KIWTPLT  467 (559)
T ss_pred             eeecCCc
Confidence            9999854

>KOG0322|consensus

Probab=99.84  E-value=6.3e-20  Score=156.64  Aligned_cols=280  Identities=14%  Similarity=0.175  Sum_probs=193.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      +.++++.|..+++ |++|...|.+.+|++.+......++ .|...|+.+.--|+ ..+.+-+.|..+.+|++..+..+..
T Consensus        15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i   92 (323)
T KOG0322|consen   15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI   92 (323)
T ss_pred             chheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE
Confidence            4578888888775 8899999999999999998888888 67788999998887 4688888999999999987654433


Q ss_pred             EeCCCCeEEEEEeC-----CCC---eEEEEeeCC-CcEEEEEecCCceeeccc----CCCCceEEEEEee-CCC--EEEE
Q psy2110         274 YRFPSPILKVQFHP-----RND---HMFLVCPMR-HAAVLVDTDGDHQIVPID----EDSDLSIVASFDR-RGQ--HVVT  337 (622)
Q Consensus       274 ~~~~~~v~~~~~~~-----~~~---~~~~~~~~~-~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~-~~~--~l~~  337 (622)
                      -.  -.++++.|++     ..+   .+++.-+.. ..+.+-|......+....    ...+.+.+..+.. ++.  ++++
T Consensus        93 ~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~llla  170 (323)
T KOG0322|consen   93 HS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLA  170 (323)
T ss_pred             ee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEE
Confidence            22  2233333332     221   111111100 011122222111111111    1223344444322 222  4567


Q ss_pred             EecCCeEEEEeCCCccEE----------EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         338 GNSKGKVLVLSCPALELK----------ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      |.++|.+.+||+.++..+          .....|..+|.++.+.+.-..=++++.+..+..|+++.....      -.+.
T Consensus       171 GyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs------lq~~  244 (323)
T KOG0322|consen  171 GYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS------LQIR  244 (323)
T ss_pred             eccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc------cccc
Confidence            889999999999987433          334478899999999877666678888888999998731110      0111


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      . ..-..+..+..+..-||++.+|+++. ||.|+||+.++++++..|+-|.+. |++++|+|+..++|.++ |++|.+|+
T Consensus       245 ~-e~~lknpGv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVLkyHsag-vn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  245 K-EITLKNPGVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVLKYHSAG-VNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             c-eEEecCCCccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhhhhhhcc-eeEEEeCCCCchhhhccCCceEEeee
Confidence            1 11122344556789999999999998 999999999999999999999987 99999999999999999 99999998


Q ss_pred             c
Q psy2110         487 Q  487 (622)
Q Consensus       487 ~  487 (622)
                      +
T Consensus       322 L  322 (323)
T KOG0322|consen  322 L  322 (323)
T ss_pred             c
Confidence            6

>KOG1007|consensus

Probab=99.83  E-value=2.1e-18  Score=149.23  Aligned_cols=267  Identities=15%  Similarity=0.234  Sum_probs=197.8

Q ss_pred             CCeEEEEEcCCCc--e-EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCC-------CcEEEEecC
Q psy2110         103 QHALYIWEKSVGN--L-VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCND-------GRIVLWDFL  171 (622)
Q Consensus       103 ~~~i~vwd~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~d-------g~i~vw~~~  171 (622)
                      ++.|.+.++..+.  + -..|..|.++|                 +.++-+|-.+ .|+|+..+       ..+.||.+.
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEv-----------------w~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip  101 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEV-----------------WDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP  101 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcce-----------------ehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc
Confidence            4677777765433  2 24566677777                 6899899655 55555432       247799886


Q ss_pred             Ccccccc---cccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-EEEec-----cCCcCeeEE
Q psy2110         172 TRGIAKI---ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-AKIIS-----AHMHPVCSI  242 (622)
Q Consensus       172 ~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~  242 (622)
                      .......   +..-.  ..  .......|.|+.|.|++..+++-. +..|.+|++..... ...+.     .|....++-
T Consensus       102 e~~~~S~~~tlE~v~--~L--dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg  176 (370)
T KOG1007|consen  102 EPLGQSNSSTLECVA--SL--DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSG  176 (370)
T ss_pred             cccCccccchhhHhh--cC--CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccc
Confidence            5322100   00000  00  001124689999999999998775 88999999987654 33322     356678888


Q ss_pred             EEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-Cceeeccc
Q psy2110         243 SWSR--NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPID  317 (622)
Q Consensus       243 ~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~  317 (622)
                      +|+|  +|+.+++.+ |++++.||+++.++...++  |...+..+.|+|+..+++++|+.|+.+++||.+. ..++..+.
T Consensus       177 ~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~  255 (370)
T KOG1007|consen  177 AWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP  255 (370)
T ss_pred             ccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence            9998  788887775 7999999999988888777  7788999999999999999999999999999985 56888999


Q ss_pred             CCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCC-----------------------------ccEEEEEecCCCCEEE
Q psy2110         318 EDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPA-----------------------------LELKASFKASTTAIKS  367 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-----------------------------~~~~~~~~~~~~~i~~  367 (622)
                      .|...+.++.|+|.. ++|++|+.|..|.+|....                             ...+.++..|...|.+
T Consensus       256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~  335 (370)
T KOG1007|consen  256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA  335 (370)
T ss_pred             CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence            999999999999964 6788999999999986532                             0123467789999999


Q ss_pred             EEEcCCCCE-EEEEeCCCcEEEEecc
Q psy2110         368 IEFARRGNC-LLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       368 ~~~s~~~~~-l~~~~~d~~i~i~d~~  392 (622)
                      ++||.-..+ ||+-+.||.+.|=.+.
T Consensus       336 ~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  336 LAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             EeeccCCCeeEEEeccCceEEeecCC
Confidence            999987765 4556889999887665

>KOG0649|consensus

Probab=99.83  E-value=2.3e-17  Score=139.37  Aligned_cols=274  Identities=16%  Similarity=0.144  Sum_probs=188.5

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCC----------CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      .+-++||.+++|++|..+ |.|.+..+++          ...+..+++|.++++                 .++|.  ..
T Consensus        14 f~qa~sp~~~~l~agn~~-G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy-----------------~~~f~--d~   73 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLF-GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY-----------------YLAFH--DD   73 (325)
T ss_pred             HHHhhCCcceEEEEecCC-CeEEEEEehhhhccccCCCCCcceeeccccCCCee-----------------eeeee--hh
Confidence            345899999999999876 9999998753          134455688888885                 99998  44


Q ss_pred             EEEEeeCCCcEEEEecCCccc----ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGI----AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      +|++|+ ||.|+=|..+....    ...+... .+...+ ......|.++...|..+-++.++.|+.++.||+++|+..+
T Consensus        74 ~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~-~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r  150 (325)
T KOG0649|consen   74 FLLSGG-DGLVYGWEWNEEEESLATKRLWEVK-IPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR  150 (325)
T ss_pred             heeecc-CceEEEeeehhhhhhccchhhhhhc-CccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence            777776 49999998765322    1111111 111111 1122357889999887777777789999999999999999


Q ss_pred             EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---C--------CCeEEEEEeCCCCeEEEEeeCC
Q psy2110         231 IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---P--------SPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       231 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~--------~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      .+++|++.|.++.--.....+++|+.||++|+||.+++++++.+..   +        ..|.+++.+.+    .++|+..
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgG  226 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGG  226 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc----eEEecCC
Confidence            9999999999999855556799999999999999999999988762   1        12444444432    3456667


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      ..+.+|.++...+...+... ..+..+.|.  .+.+++++..+.+.-|.+. |.+...........++..|+-.--.+++
T Consensus       227 p~lslwhLrsse~t~vfpip-a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s  302 (325)
T KOG0649|consen  227 PKLSLWHLRSSESTCVFPIP-ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFIS  302 (325)
T ss_pred             CceeEEeccCCCceEEEecc-cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEE
Confidence            78999999987655444332 223334443  3477777777788888764 5555555555555666666544433443


Q ss_pred             -EeCCCcEEEE
Q psy2110         380 -NTGDRLIRVY  389 (622)
Q Consensus       380 -~~~d~~i~i~  389 (622)
                       ++....+.|+
T Consensus       303 ~ag~s~~~~i~  313 (325)
T KOG0649|consen  303 IAGFSNKLHIL  313 (325)
T ss_pred             ecccceeeeee
Confidence             4555556554

>KOG2110|consensus

Probab=99.83  E-value=5.8e-17  Score=145.56  Aligned_cols=234  Identities=16%  Similarity=0.217  Sum_probs=182.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD--NNVCIWDVLTGECEQKY  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~  274 (622)
                      +....|+.+...|..|+.+| .++|..+..............|..+-|+.  .+++..+.+  +.+++++++.+..+..+
T Consensus         8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~   84 (391)
T KOG2110|consen    8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEI   84 (391)
T ss_pred             eeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEE
Confidence            55667999999999998887 57787765443222223334566666764  456655544  45999999999999999


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC---CCceEEEEEeeCCCEEEEE--ecCCeEEEEeC
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED---SDLSIVASFDRRGQHVVTG--NSKGKVLVLSC  349 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~  349 (622)
                      .++.+|.++.++.+.   ++++-.+. |++||++..+.+.++...   ...+..++++..+.+++.-  ...|.|.+||+
T Consensus        85 ~fpt~IL~VrmNr~R---LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   85 FFPTSILAVRMNRKR---LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             ecCCceEEEEEccce---EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            999999999998642   44444333 999999998877766543   3445555666666688763  34689999999


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRL-IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      .+.+.+..+..|.+.+.+++|+++|.+||+++..|+ ||||.+.         +...+..|+.......+.+++|+||++
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~---------~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP---------EGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC---------CccEeeeeeCCceeeEEEEEEECCCCC
Confidence            999999999999999999999999999999999887 8999998         556677777666677888999999999


Q ss_pred             eEEEeeCCCCeEEEEECCC
Q psy2110         429 YVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~  447 (622)
                      +|++.+. .++|+||.++.
T Consensus       232 ~L~~sS~-TeTVHiFKL~~  249 (391)
T KOG2110|consen  232 FLAASSN-TETVHIFKLEK  249 (391)
T ss_pred             eEEEecC-CCeEEEEEecc
Confidence            9999887 88999998753

>KOG0642|consensus

Probab=99.81  E-value=4.4e-19  Score=167.48  Aligned_cols=236  Identities=15%  Similarity=0.191  Sum_probs=181.0

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCc--------ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTR--------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  216 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  216 (622)
                      +.++|.|-...|++++.||+|++|+++..        +.+.++..|.           .+|.|+++.+++.++++|+-||
T Consensus       298 r~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----------gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  298 RALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----------GPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             hhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----------CceEEEEecCCceEEEeeccCc
Confidence            68999999999999999999999999321        2344555555           3589999999999999999999


Q ss_pred             eEEEEEcCCC----------ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEE
Q psy2110         217 RIVLWDFLTR----------GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKV  283 (622)
Q Consensus       217 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~  283 (622)
                      +|+.|++...          .....+.||.+.|+.+++|+....|++++.||++++|+...... .++.   -.+...++
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            9999966421          23456789999999999999988999999999999999876665 3333   22333445


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                      .+-.....+.++...-+...++++........+.       .....+..+...|.+.+.+++..++.|+++|..+++++.
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            5443332233333333333344443332222221       122345567788999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ....|...++++++.|+|.+|++++.|+.+++|.+.
T Consensus       526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             heeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence            999999999999999999999999999999999987

>KOG4227|consensus

Probab=99.81  E-value=1.1e-17  Score=150.84  Aligned_cols=288  Identities=10%  Similarity=0.136  Sum_probs=210.2

Q ss_pred             hhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcC------CCceEEEEeccC-cceeEEEEeecCccccccceeEEE
Q psy2110          76 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS------VGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        76 ~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      ....+.+.+.++.||.++++|++|+. |..+++|++.      +.+++.....|. ..|                 .|++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGD-D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNI-----------------F~L~  112 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGD-DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNI-----------------FSLE  112 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCC-cceeeeechHHHHhhcCCCCceeccCccccce-----------------EEEE
Confidence            33445566779999999999999996 4899999985      335555444333 555                 5999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-  227 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-  227 (622)
                      |...+++|++|..+++|.+-|+++.+.+..+......         ..|+.+..+|..+.|++.+.++.|.+||..... 
T Consensus       113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~---------~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR---------GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             EccCCeeEecCCCcceeEeeecccceeeeeecccCcc---------cceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            9999999999999999999999998877766544332         358899999999999999999999999987654 


Q ss_pred             --eEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE-EEEEe----CCC---CeEEEEEeCCCCeEEEEe
Q psy2110         228 --IAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGEC-EQKYR----FPS---PILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       228 --~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~~~---~v~~~~~~~~~~~~~~~~  296 (622)
                        ....+.........+.|+| ...+|++++..+-+-+||++..+. +....    .+.   .-.++.|+|.|..++. -
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms-i  262 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS-I  262 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh-h
Confidence              2223334456778899999 456788888888999999986532 11111    222   2367889999986544 3


Q ss_pred             eCCCcEEEEEecCCce-eecccCCC------CceEEEEEeeCCCEEEEEecCCeEEEEeCCC------------------
Q psy2110         297 PMRHAAVLVDTDGDHQ-IVPIDEDS------DLSIVASFDRRGQHVVTGNSKGKVLVLSCPA------------------  351 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------  351 (622)
                      -....-.+||+.+..+ +..+....      ..+.+++|..+- .+++|+.+-.|++|.+..                  
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~  341 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP  341 (609)
T ss_pred             hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence            3444556778776433 33333211      234456665444 489999999999998752                  


Q ss_pred             -----ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         352 -----LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       352 -----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                           .+.+..+++|...++.+.|+|...+|++.+-...+++|.-.
T Consensus       342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             hhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence                 12345678999999999999999999999999999999754

>KOG1587|consensus

Probab=99.80  E-value=3e-17  Score=163.57  Aligned_cols=274  Identities=14%  Similarity=0.113  Sum_probs=194.6

Q ss_pred             ceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce--EEE----Eecc
Q psy2110          50 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL--VKI----LHGT  123 (622)
Q Consensus        50 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~--~~~----~~~~  123 (622)
                      +.+.+|++..           +...-..+.....++|++|+|....+++|+..+|.|.+||+..+..  ...    ...|
T Consensus       222 ~~~~vW~~~~-----------p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh  290 (555)
T KOG1587|consen  222 GVLLVWSLKN-----------PNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSH  290 (555)
T ss_pred             ceEEEEecCC-----------CCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccC
Confidence            3788999864           2344445666778899999998777766666669999999987654  222    2345


Q ss_pred             CcceeEEEEeecCccccccceeEEEEcCCC--CEEEEeeCCCcEEEEecCCccc-ccccccccCCCcccccccccceEEE
Q psy2110         124 KGELLLDVVEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTRGI-AKIISAHMHPEFDGALDCISLAVTC  200 (622)
Q Consensus       124 ~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~  200 (622)
                      ..++                 +.+.|..+-  .-+++++.||.|..|+++.-.. .....................++++
T Consensus       291 ~~~v-----------------~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~  353 (555)
T KOG1587|consen  291 SEPV-----------------TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL  353 (555)
T ss_pred             CcCe-----------------EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE
Confidence            5555                 577776644  4599999999999998765322 1111111111001111122357889


Q ss_pred             EECCC-CCEEEEEeCCCeEEEEEcCCC--------ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcE
Q psy2110         201 AFNKR-GTLLAVGCNDGRIVLWDFLTR--------GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGEC  270 (622)
Q Consensus       201 ~~s~~-g~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~  270 (622)
                      +|.+. -..+++|+..|.|.--+-...        +....+..|.++|+++.++|=+..++..+.|.+++||... ...+
T Consensus       354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P  433 (555)
T KOG1587|consen  354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP  433 (555)
T ss_pred             eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence            99884 457889999999877332221        1233556788999999999976655555559999999987 5556


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      +..+. ....+++++|||....+|+++..+|.+.+||+...  .++............+.|+++|+.|++|...|.+++|
T Consensus       434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence            65555 55669999999999999999999999999999643  4555555556667788899999999999999999999


Q ss_pred             eCCC
Q psy2110         348 SCPA  351 (622)
Q Consensus       348 d~~~  351 (622)
                      ++..
T Consensus       514 ~l~~  517 (555)
T KOG1587|consen  514 KLSE  517 (555)
T ss_pred             EcCc
Confidence            9863

>KOG1524|consensus

Probab=99.80  E-value=3.4e-18  Score=160.13  Aligned_cols=206  Identities=18%  Similarity=0.270  Sum_probs=168.0

Q ss_pred             CEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-eCCCCeEEEEE
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-RFPSPILKVQF  285 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~  285 (622)
                      ..|+.++.||.+.+.+ ..++..+.+..|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++ +...+|+|++|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            4678888999999887 56777788899999999999999999999999999999998 455443333 36789999999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                      .|+.+.++++.  .+.+.+-.+.....+..+..|.+.+.++.|++....+++|++|-..++||.. |..+..-..|..+|
T Consensus       154 ~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  154 APNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI  230 (737)
T ss_pred             CCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence            99999877765  4567777777778888999999999999999999999999999999999954 77788888999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEE
Q psy2110         366 KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYI  442 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~i  442 (622)
                      ++++|.|+ +.++.++.+ ++|+=.                      .....+..++||+||..+++|+. .|.+.+
T Consensus       231 TSva~npd-~~~~v~S~n-t~R~~~----------------------p~~GSifnlsWS~DGTQ~a~gt~-~G~v~~  282 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TARFSS----------------------PRVGSIFNLSWSADGTQATCGTS-TGQLIV  282 (737)
T ss_pred             eeeeeccc-cceeeeeee-eeeecC----------------------CCccceEEEEEcCCCceeecccc-CceEEE
Confidence            99999999 666666643 344211                      12244567899999999999987 555443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.2e-17  Score=168.32  Aligned_cols=235  Identities=16%  Similarity=0.203  Sum_probs=165.5

Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH  291 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  291 (622)
                      +..|++||..... .+.+..|...+.+++|+|||++|+.++.+   ..|++||+.+++.............++|+|+++.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4689999986544 56677788899999999999999988754   3699999998876544444455567899999998


Q ss_pred             EEEEeeCCCcEEEE--EecCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCC-ccEEEEEecCCCCEEE
Q psy2110         292 MFLVCPMRHAAVLV--DTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPA-LELKASFKASTTAIKS  367 (622)
Q Consensus       292 ~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~~~~~~i~~  367 (622)
                      ++++...++.+.+|  |+.++. ...+..+...+....|+|+|+.|+..+ .+|...||++.. +.....+ .+..  ..
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~  337 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YS  337 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CC
Confidence            88877777765555  554443 344555566677899999999877654 567777776542 2222223 3333  46


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC--
Q psy2110         368 IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK--  445 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~--  445 (622)
                      ..|+|+|++|++.+.++ +.+||+...       ..   ..+....   ....+.|+|||++|++++. ++.+.+|.+  
T Consensus       338 ~~~SpDG~~ia~~~~~~-i~~~Dl~~g-------~~---~~lt~~~---~~~~~~~sPdG~~i~~~s~-~g~~~~l~~~~  402 (429)
T PRK01742        338 AQISADGKTLVMINGDN-VVKQDLTSG-------ST---EVLSSTF---LDESPSISPNGIMIIYSST-QGLGKVLQLVS  402 (429)
T ss_pred             ccCCCCCCEEEEEcCCC-EEEEECCCC-------Ce---EEecCCC---CCCCceECCCCCEEEEEEc-CCCceEEEEEE
Confidence            78999999999887765 556888731       11   1111111   1134689999999999987 666676664  


Q ss_pred             CCCeeEEEEecCCCCceeEEEECCC
Q psy2110         446 SVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       446 ~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      .+|...+.+.+|.+. +..++|+|-
T Consensus       403 ~~G~~~~~l~~~~g~-~~~p~wsp~  426 (429)
T PRK01742        403 ADGRFKARLPGSDGQ-VKFPAWSPY  426 (429)
T ss_pred             CCCCceEEccCCCCC-CCCcccCCC
Confidence            357888888888776 899999985

>KOG2110|consensus

Probab=99.80  E-value=6.5e-16  Score=138.88  Aligned_cols=276  Identities=17%  Similarity=0.199  Sum_probs=181.3

Q ss_pred             cceeEEEEcCCCCEEEEecCCC-CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQ-HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ..+.-+-||..  ++|..+.++ ..+++.+.+.+..+-.+.-... |                 .++.++  .++|+++-
T Consensus        47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~-I-----------------L~VrmN--r~RLvV~L  104 (391)
T KOG2110|consen   47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS-I-----------------LAVRMN--RKRLVVCL  104 (391)
T ss_pred             eEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCc-e-----------------EEEEEc--cceEEEEE
Confidence            34445667654  444444332 4688888887777666554433 2                 377776  44677776


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      .+ .|+|||+.+.+.+.++.......        ..+.++++++.+.+||.-+  ..|.|.+||..+-+....+..|.++
T Consensus       105 ee-~IyIydI~~MklLhTI~t~~~n~--------~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen  105 EE-SIYIYDIKDMKLLHTIETTPPNP--------KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             cc-cEEEEecccceeehhhhccCCCc--------cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence            65 49999999998888876552211        2356667777777888743  3689999999999999999999999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCc-EEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee
Q psy2110         239 VCSISWSRNGYKIISASTDNN-VCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  314 (622)
                      +-+++|+++|.+||+++..|+ |||+.+.+|+.+..|+   ....|.+++|+|++. ++.+.+..++|.++.+..... .
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~-~  253 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSN-N  253 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEeccccc-C
Confidence            999999999999999999986 8999999999999998   346789999999998 677778889999999875431 0


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .........  -.+.+-.+.+.+---.+.-.+|+....-....+.... ..+..+.-.+...++.+++.||.++.|.+.
T Consensus       254 ~~~~p~~~~--~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~  330 (391)
T KOG2110|consen  254 PPESPTAGT--SWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLP  330 (391)
T ss_pred             CCCCCCCCC--cccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence            000000000  0000000000000001112224433221222222211 233344334577899999999999999987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.80  E-value=2.8e-16  Score=152.76  Aligned_cols=322  Identities=15%  Similarity=0.131  Sum_probs=207.9

Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      +++-..++.|.+.|..+.+.+..+.....           .-..+.|+|||+++++++.||.|.++|+.+++.+.+++..
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~-----------~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G   77 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGA-----------PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG   77 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STT-----------EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCC-----------ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence            34555689999999999888887765432           1245789999999999999999999999999999998865


Q ss_pred             CcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC--------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         236 MHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRF--------PSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                      . ...++++|+||++++++. ..+.+.++|.++.+.++.+..        ...+.++..+|..+.+++.--..+.+.+.|
T Consensus        78 ~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   78 G-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             S-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             C-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            4 457899999999998776 578999999999999988762        235778888888887666667778898888


Q ss_pred             ecCCcee-ecccCCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEe----cCCCCEEEEEEcCCCC-EEEE
Q psy2110         307 TDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFK----ASTTAIKSIEFARRGN-CLLV  379 (622)
Q Consensus       307 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~-~l~~  379 (622)
                      ....... ..............|+|++++++++ ...+.|-++|..+++.+..+.    .|..++..+ .+|... ..++
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~  235 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT  235 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE
T ss_pred             eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee
Confidence            7664332 2233344566788999999987664 566789999999998877665    344444443 233321 1112


Q ss_pred             E---------eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEe---eCCCCeEEEEECCC
Q psy2110         380 N---------TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG---SARQHALYIWEKSV  447 (622)
Q Consensus       380 ~---------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~---~~~d~~i~iwd~~~  447 (622)
                      .         -....+.+|+..         ..+.++.+......   .-+..+|+++++.+.   +.+...|.++|.++
T Consensus       236 ~~~~~~~~~~ig~~~v~v~d~~---------~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  236 SGLGYFAIPLIGTDPVSVHDDY---------AWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             EBSSSSEEEEEE--TTT-STTT---------BTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             ccccceecccccCCccccchhh---------cCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            2         112233344444         34555555543222   345779999999988   44467899999999


Q ss_pred             CeeEEEEecCCCCceeEEEECCCCCEEEEEe---CCcEEEeecCCccccc---ccCCCCce
Q psy2110         448 GNLVKILHGTKGELLLDVVWHPVRPIIASIS---SGVVSLWAQNQVENWS---AFAPDFKE  502 (622)
Q Consensus       448 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---dg~v~iw~~~~~~~~~---~~s~~~~~  502 (622)
                      .+.+..+....+..+..+.|+++|+.+..+.   ++.|.++|..+.+...   ..+|.|+.
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~tP~G~f  364 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPTPTGKF  364 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--SEEEEE
T ss_pred             cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeCCCeEe
Confidence            9888887644443489999999999776655   3479999987654332   34455544

...

>KOG0322|consensus

Probab=99.79  E-value=2.4e-18  Score=147.07  Aligned_cols=256  Identities=14%  Similarity=0.198  Sum_probs=176.5

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      .++..++++.|-.+++ |.+|... |.+.+|++.+......++++.....                +.+.--|+ ..|.+
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~i----------------t~lq~~p~-d~l~t   72 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFI----------------TNLQSIPN-DSLDT   72 (323)
T ss_pred             cccchheehhhccchh-hhccccc-ceEEEEEeecCccchhhhhhcccee----------------eceeecCC-cchhh
Confidence            5667788899988877 6677765 9999999999988888885544332                57777776 46788


Q ss_pred             eeCCCcEEEEecCCccccc--------------ccccccCCC----------------------------cccccccccc
Q psy2110         159 GCNDGRIVLWDFLTRGIAK--------------IISAHMHPE----------------------------FDGALDCISL  196 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~--------------~~~~~~~~~----------------------------~~~~~~~~~~  196 (622)
                      -+.|+.+.+|++..+..+.              .+.......                            ..........
T Consensus        73 qgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             cCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence            8899999999886632111              110000000                            0000011223


Q ss_pred             eEEEEECC-CCC--EEEEEeCCCeEEEEEcCCCceE----------EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEE
Q psy2110         197 AVTCAFNK-RGT--LLAVGCNDGRIVLWDFLTRGIA----------KIISAHMHPVCSISWSRNGYKIISASTDNNVCIW  263 (622)
Q Consensus       197 v~~~~~s~-~g~--~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw  263 (622)
                      +.+..+.. +++  +|++|..+|.+.+||+.++..+          .....|..+|.++.+.+.-..=++|+.+..+..|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            44444322 233  5677888999999999987433          3344688888888887654445566666667777


Q ss_pred             ECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         264 DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       264 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                      .++.......+                                      .......+..+..+.+.||++.+++++.|++
T Consensus       233 Sl~~s~gslq~--------------------------------------~~e~~lknpGv~gvrIRpD~KIlATAGWD~R  274 (323)
T KOG0322|consen  233 SLNHSTGSLQI--------------------------------------RKEITLKNPGVSGVRIRPDGKILATAGWDHR  274 (323)
T ss_pred             eeccccCcccc--------------------------------------cceEEecCCCccceEEccCCcEEeecccCCc
Confidence            66422100000                                      0001112234556778899999999999999


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      |+||+.++..++..+..|...|++++|+|+...+|.++.|++|.+|++
T Consensus       275 iRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  275 IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999999999986

>KOG0303|consensus

Probab=99.79  E-value=1.3e-17  Score=150.68  Aligned_cols=232  Identities=19%  Similarity=0.260  Sum_probs=179.8

Q ss_pred             EeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         231 IISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE-------CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       231 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      .+.+|.++|..++|+| +...||+|+.|.+|.||.+..+-       ++..+. |...|.-++|+|.-.+++++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4568999999999999 66789999999999999987543       233333 78899999999999999999999999


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCCCCEEEEE
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARRGNCLLVN  380 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~  380 (622)
                      +.+|++.++..+..+. |.+.|+++.|+.+|.++++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|..+-+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888887 9999999999999999999999999999999999999888777653 3345677788844444


Q ss_pred             e---CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE-EEEec
Q psy2110         381 T---GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-KILHG  456 (622)
Q Consensus       381 ~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~-~~~~~  456 (622)
                      -   +++.+-+||.....      .+   ..+........+.---|.+|.+.|..++..|+.|+.|.+....+. +.|..
T Consensus       235 fsr~seRq~aLwdp~nl~------eP---~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~  305 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLE------EP---IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNT  305 (472)
T ss_pred             cccccccceeccCccccc------Cc---ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecc
Confidence            2   47889999987421      22   233333344444445788999999888877999999998876532 22322


Q ss_pred             -CCCCceeEEEECCCCC
Q psy2110         457 -TKGELLLDVVWHPVRP  472 (622)
Q Consensus       457 -~~~~~v~~v~~sp~~~  472 (622)
                       ...++-..+.|-|..-
T Consensus       306 f~S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  306 FSSKEPQRGMGFMPKRG  322 (472)
T ss_pred             cccCCcccccccccccc
Confidence             1122356677777643

>KOG1310|consensus

Probab=99.79  E-value=8.5e-18  Score=157.99  Aligned_cols=213  Identities=19%  Similarity=0.225  Sum_probs=161.6

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                      ..+.+.||.+.|+                 ++.|+.+|.+|++|+.|-.+.|||....+.+..+.....          .
T Consensus        42 lE~eL~GH~GCVN-----------------~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt----------a   94 (758)
T KOG1310|consen   42 LEAELTGHTGCVN-----------------CLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT----------A   94 (758)
T ss_pred             hhhhhccccceec-----------------ceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc----------c
Confidence            3467889999985                 999999999999999999999999987776666543322          4


Q ss_pred             ceEEEEECC--CCCEEEEEeCCCeEEEEEcCC----------CceEEEeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEE
Q psy2110         196 LAVTCAFNK--RGTLLAVGCNDGRIVLWDFLT----------RGIAKIISAHMHPVCSISWSRNG-YKIISASTDNNVCI  262 (622)
Q Consensus       196 ~v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~i  262 (622)
                      .|.++.|-|  +.+++++|..|..|+++|+..          ....+.+.+|...|..|+-.|++ ..+.+++.||+|+-
T Consensus        95 NIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ  174 (758)
T KOG1310|consen   95 NIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ  174 (758)
T ss_pred             ceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence            689999988  456899999999999999974          23456677899999999999988 78999999999999


Q ss_pred             EECCCCcE-------EEEEe--C--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------------------e
Q psy2110         263 WDVLTGEC-------EQKYR--F--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------------------I  313 (622)
Q Consensus       263 wd~~~~~~-------~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------~  313 (622)
                      +|++....       ...+.  +  --...++..+|..++++++|+.+-..++||.+...+                  +
T Consensus       175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv  254 (758)
T KOG1310|consen  175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCV  254 (758)
T ss_pred             ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchh
Confidence            99986321       11111  1  134678999999999999999999999999532100                  1


Q ss_pred             ecc-cCCC-----------CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         314 VPI-DEDS-----------DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       314 ~~~-~~~~-----------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      ..+ .+|-           ..++.+.|+|+|.-|++.-..-.|+++|+..++..
T Consensus       255 ~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  255 RYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             heecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            111 0110           11456789999988777666667999999877643

>KOG0649|consensus

Probab=99.79  E-value=1e-16  Score=135.56  Aligned_cols=245  Identities=14%  Similarity=0.204  Sum_probs=176.5

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM   83 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (622)
                      |.+-++||.+++|+.|+.+|+|.+..+....          +++.                  ..+.....+....+...
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~----------s~sa------------------~~~gk~~iv~eqahdgp   64 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLD----------SGSA------------------EPPGKLKIVPEQAHDGP   64 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhh----------cccc------------------CCCCCcceeeccccCCC
Confidence            5566889999999999999999988764311          1111                  01112222222456667


Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE------EEE--eccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV------KIL--HGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~------~~~--~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      ++.++|.  ..+|++|+  ||.|+-|.++.....      ...  .-|.+.            --+..|.+|...|..+-
T Consensus        65 iy~~~f~--d~~Lls~g--dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~------------~evPeINam~ldP~enS  128 (325)
T KOG0649|consen   65 IYYLAFH--DDFLLSGG--DGLVYGWEWNEEEESLATKRLWEVKIPMQVDA------------VEVPEINAMWLDPSENS  128 (325)
T ss_pred             eeeeeee--hhheeecc--CceEEEeeehhhhhhccchhhhhhcCccccCc------------ccCCccceeEeccCCCc
Confidence            7889997  56788887  499999988643221      111  111111            11234568899998888


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      +++++.|+.++-||+++|+..+.+++|.           ..+.++.--.....+++|+.||++++||.++++++..+...
T Consensus       129 i~~AgGD~~~y~~dlE~G~i~r~~rGHt-----------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDGRIQREYRGHT-----------DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             EEEecCCeEEEEEEecCCEEEEEEcCCc-----------ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence            8888899999999999999999999987           45778877555557889999999999999999988776432


Q ss_pred             ---------C-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         236 ---------M-HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       236 ---------~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                               . ..|-+++.  +..+|++|+. ..+.+|++++.++...+..+.++..+.|..+   .+++++..+.+.-|
T Consensus       198 k~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d---~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  198 KNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD---CVLIGGEGNHVQSY  271 (325)
T ss_pred             cChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc---eEEEeccccceeee
Confidence                     1 23455554  4557887764 5799999999999999999999999999865   57777777788888


Q ss_pred             EecC
Q psy2110         306 DTDG  309 (622)
Q Consensus       306 d~~~  309 (622)
                      .+..
T Consensus       272 ~l~G  275 (325)
T KOG0649|consen  272 TLNG  275 (325)
T ss_pred             eecc
Confidence            7765

>KOG1587|consensus

Probab=99.79  E-value=4.5e-17  Score=162.28  Aligned_cols=264  Identities=18%  Similarity=0.255  Sum_probs=195.9

Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCce--EE----EeccC
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGI--AK----IISAH  235 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~  235 (622)
                      +.+.||++......           ...+.+.+.|.++.|+|. ..+++.|+.+|+|.+||+..+..  ..    ....|
T Consensus       222 ~~~~vW~~~~p~~P-----------e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh  290 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTP-----------ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSH  290 (555)
T ss_pred             ceEEEEecCCCCCc-----------eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccC
Confidence            47889998774111           112222357999999995 56778888999999999987654  22    23368


Q ss_pred             CcCeeEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEE-------------EEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         236 MHPVCSISWSRNG--YKIISASTDNNVCIWDVLTGECEQ-------------KYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       236 ~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      ..+++.+.|..+-  .-|++++.||.|..|+++.-....             .......++++.|.+.....|++|+..|
T Consensus       291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G  370 (555)
T KOG1587|consen  291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG  370 (555)
T ss_pred             CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence            8999999997644  459999999999999886432210             1112346889999999999999999999


Q ss_pred             cEEEEEecCCc--------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEEEEc
Q psy2110         301 AAVLVDTDGDH--------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSIEFA  371 (622)
Q Consensus       301 ~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s  371 (622)
                      .|..-......        ....+..|.+.++++.++|=+..++..+.|.+++||... ...++..+..+...+++++||
T Consensus       371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS  450 (555)
T KOG1587|consen  371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS  450 (555)
T ss_pred             EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence            98874443321        133566788999999999988766666669999999987 677888888888889999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         372 RRGN-CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       372 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      |... .|+++..||.|.+||+..       ....++.+....  ......+.|++.|+.|++|.. .|.+++|++..
T Consensus       451 ptrpavF~~~d~~G~l~iWDLl~-------~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~-~G~~~~~~l~~  517 (555)
T KOG1587|consen  451 PTRPAVFATVDGDGNLDIWDLLQ-------DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDA-NGTTHILKLSE  517 (555)
T ss_pred             CcCceEEEEEcCCCceehhhhhc-------cccCCccccccc--ccccceeecCCCCcEEEEecC-CCcEEEEEcCc
Confidence            9875 556667799999999983       233343333222  344456789999999999997 89999999853

>KOG1517|consensus

Probab=99.79  E-value=3.2e-17  Score=165.64  Aligned_cols=288  Identities=15%  Similarity=0.197  Sum_probs=205.0

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEeeCC
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGCND  162 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~d  162 (622)
                      ..+.|+|-...++++..+ -.|+|||++.++.+..|..+...-              ..|+.+.+-.  |..++++|+.|
T Consensus      1068 k~~~~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~--------------t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPD--------------TRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred             ceeeecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCC--------------CccceeeeecccchhheeeeccC
Confidence            457899999999998755 699999999999988777655322              2345666643  45689999999


Q ss_pred             CcEEEEecC-Cc-ccccccccccCC--CcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCc
Q psy2110         163 GRIVLWDFL-TR-GIAKIISAHMHP--EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMH  237 (622)
Q Consensus       163 g~i~vw~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~  237 (622)
                      |.||||+-. .+ +..+....-..-  ...+..   +.-.-+.|.....+|++++.-..|+|||.........+. +...
T Consensus      1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r---~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR---GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred             ceEEEecccccccCCceeEEeeccccccCccCC---CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence            999999643 22 111111111000  000000   111345777776777777778899999998877776665 3345


Q ss_pred             CeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE---EEEEe-CCCC--eEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         238 PVCSISWSR-NGYKIISASTDNNVCIWDVLTGEC---EQKYR-FPSP--ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       238 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      .|+++.-+. .|+.|++|..||.|++||.+....   +...+ |...  |..+.+.+.|-.-+++++.+|.|++||++..
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            677776554 568999999999999999986543   33333 5544  9999999988777999999999999999975


Q ss_pred             ceee--cccCC---CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-------cCCCCEEEEEEcCCCCEEE
Q psy2110         311 HQIV--PIDED---SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-------ASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       311 ~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~  378 (622)
                      ....  .+..|   .+..+++..+++...+++|+. +.|+||++. |+.+..++       ...+.+.+++|+|-.-++|
T Consensus      1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred             cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence            2222  22222   224889999999999999998 899999986 44333333       2235679999999999999


Q ss_pred             EEeCCCcEEEEecc
Q psy2110         379 VNTGDRLIRVYNHQ  392 (622)
Q Consensus       379 ~~~~d~~i~i~d~~  392 (622)
                      +|+.|.+|.||...
T Consensus      1368 aG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1368 AGSADSTVSIYSCE 1381 (1387)
T ss_pred             hccCCceEEEeecC
Confidence            99999999999876

>KOG1007|consensus

Probab=99.79  E-value=3.4e-17  Score=141.86  Aligned_cols=227  Identities=13%  Similarity=0.213  Sum_probs=164.7

Q ss_pred             eEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce-EEEEec-----cC
Q psy2110          51 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-VKILHG-----TK  124 (622)
Q Consensus        51 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~-~~~~~~-----~~  124 (622)
                      ...+|.+...........-+....+.+ ...+.+.|+.|.|++..|++-.  ++.|.+|++..+.. +..+..     +.
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~klasm~--dn~i~l~~l~ess~~vaev~ss~s~e~~  170 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDKLASMD--DNNIVLWSLDESSKIVAEVLSSESAEMR  170 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCeeEEec--cCceEEEEcccCcchheeeccccccccc
Confidence            457898875443311111111222211 2334678999999999999876  48999999987765 333322     22


Q ss_pred             cceeEEEEeecCccccccceeEEEEcC--CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEE
Q psy2110         125 GELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF  202 (622)
Q Consensus       125 ~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  202 (622)
                      ...                 ++-+|+|  ||+.+++.+ |++++.||+++......+.....          ..|..+.|
T Consensus       171 ~~f-----------------tsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg----------q~vrdlDf  222 (370)
T KOG1007|consen  171 HSF-----------------TSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG----------QRVRDLDF  222 (370)
T ss_pred             cee-----------------cccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc----------ceeeeccC
Confidence            222                 5778998  788888765 68999999998766555543221          24889999


Q ss_pred             CCCCC-EEEEEeCCCeEEEEEcCC-CceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc----------
Q psy2110         203 NKRGT-LLAVGCNDGRIVLWDFLT-RGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE----------  269 (622)
Q Consensus       203 s~~g~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~----------  269 (622)
                      +|+.+ +|++++.||.|++||.+. ..+++.+.+|...|+++.|+| ..++|++++.|..|.+|...+-.          
T Consensus       223 Npnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~d  302 (370)
T KOG1007|consen  223 NPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDD  302 (370)
T ss_pred             CCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccc
Confidence            99876 678899999999999874 457889999999999999999 45688999999999999754210          


Q ss_pred             -------------------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         270 -------------------CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       270 -------------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                                         .+.++. |...|++++|+...+.+|++-+.||.+.+-.+.
T Consensus       303 ese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  303 ESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                               112333 778899999999999999999999998876654

>KOG0644|consensus

Probab=99.78  E-value=8.5e-19  Score=172.45  Aligned_cols=271  Identities=18%  Similarity=0.229  Sum_probs=206.5

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      +|..|...|.++++|+.|..++||..+++.++....+|..           .|+.++.+.+..++++++.|..|++|.+.
T Consensus       194 yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-----------ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  194 YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG-----------DITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             eeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc-----------ccchhccchhhhhhhhcccCceEEEEecC
Confidence            5999999999999999999999999999999999999874           48889999999999999999999999999


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE------EeCCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK------YRFPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      ++.++..+.+|++.|++++|+|-.    +.+.||++++||.+ -..+..      +.....+.++.|...+. -+.+++.
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs~  336 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGSR  336 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc-ccccccC
Confidence            999999999999999999999954    67789999999987 111111      11223455555555554 3566777


Q ss_pred             CCcEEEEEecCCceeecccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      ++....|.+...      ..+...+.-+..+.+ ..+.+++-.+..+.+|++.+|.+.+.+.+|...+..+.++|-...+
T Consensus       337 d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  337 DGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             CcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence            766665554321      111111111222212 2455666677789999999999999999999999999999976544


Q ss_pred             -EEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110         378 -LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL  450 (622)
Q Consensus       378 -~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~  450 (622)
                       .+++.||...|||+-         ...+++.+.  .++.......||+||..++.... -|.++|.....++.
T Consensus       411 ~msag~dgst~iwdi~---------eg~pik~y~--~gh~kl~d~kFSqdgts~~lsd~-hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIW---------EGIPIKHYF--IGHGKLVDGKFSQDGTSIALSDD-HGQLYILGTGQSKS  472 (1113)
T ss_pred             hhhccCCCceEeeecc---------cCCcceeee--cccceeeccccCCCCceEecCCC-CCceEEeccCCCcc
Confidence             567889999999998         334555554  33556677899999999988875 88999998766554

>KOG0290|consensus

Probab=99.77  E-value=2.3e-16  Score=136.97  Aligned_cols=278  Identities=14%  Similarity=0.221  Sum_probs=194.8

Q ss_pred             ccccceeEEEEc--CC-CCEEEEecCC---CCeEEEEEcC--CCceEEEE-eccCcceeEEEEeecCccccccceeEEEE
Q psy2110          79 VNKTMWKKCCFS--GD-GEYVCAGSAR---QHALYIWEKS--VGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        79 ~~~~~~~~~~~s--p~-~~~l~~~~~~---~~~i~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      ..+-...++.||  |+ .-+||.|+..   .+.|.|-.+.  +++.+..- -.|.-                 +++.+.|
T Consensus        42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~Y-----------------P~tK~~w  104 (364)
T KOG0290|consen   42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPY-----------------PVTKLMW  104 (364)
T ss_pred             cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCC-----------------CccceEe
Confidence            334445678888  33 3467777642   2455555442  33332211 12333                 3478999


Q ss_pred             cCCCC-----EEEEeeCCCcEEEEecCCcc----cccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEE
Q psy2110         150 NKRGT-----LLAVGCNDGRIVLWDFLTRG----IAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIV  219 (622)
Q Consensus       150 s~d~~-----~l~s~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~  219 (622)
                      .|+..     +|||++  -.+|+|.+...+    +...+..+...++.      ..+++..|+. +-+++.+++-|.+..
T Consensus       105 iPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~------aPlTSFDWne~dp~~igtSSiDTTCT  176 (364)
T KOG0290|consen  105 IPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFC------APLTSFDWNEVDPNLIGTSSIDTTCT  176 (364)
T ss_pred             cCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccC------CcccccccccCCcceeEeecccCeEE
Confidence            99863     677665  479999987421    12222222222221      3567778875 567889999999999


Q ss_pred             EEEcCCCc---eEEEeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCCe
Q psy2110         220 LWDFLTRG---IAKIISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRNDH  291 (622)
Q Consensus       220 iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~  291 (622)
                      |||++++.   ...++-.|...|..++|...+ ..|++.+.||.+|+||++..+....+-    ...+...++|++...+
T Consensus       177 iWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn  256 (364)
T KOG0290|consen  177 IWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN  256 (364)
T ss_pred             EEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch
Confidence            99999863   467788999999999999855 478999999999999999876544432    2467889999998877


Q ss_pred             EEEEeeC-CCcEEEEEecCC-ceeecccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCcc------EEEEEecCC
Q psy2110         292 MFLVCPM-RHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALE------LKASFKAST  362 (622)
Q Consensus       292 ~~~~~~~-~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~  362 (622)
                      ++++-.. ...|.+.|++.. .++..+..|...|..++|.|. ..+|++++.|..+.+||+.+.-      ++..+. ..
T Consensus       257 ymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~  335 (364)
T KOG0290|consen  257 YMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AG  335 (364)
T ss_pred             HHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-cc
Confidence            7776554 457999999975 678899999999999999996 4789999999999999987532      222233 45


Q ss_pred             CCEEEEEEcC-CCCEEEEEeC
Q psy2110         363 TAIKSIEFAR-RGNCLLVNTG  382 (622)
Q Consensus       363 ~~i~~~~~s~-~~~~l~~~~~  382 (622)
                      +.|+.+.|++ .+.+++++..
T Consensus       336 ~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  336 GEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ceeeeeeecccCCCEEEEEec
Confidence            7899999996 4567776654

>KOG2139|consensus

Probab=99.77  E-value=4.4e-16  Score=139.35  Aligned_cols=311  Identities=14%  Similarity=0.212  Sum_probs=191.2

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCND  162 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~d  162 (622)
                      +..++|++.-..+|++..| -.|++|+-.. ++...++.....-                |++++|-|.+. -|+.|+. 
T Consensus       101 lr~~aWhqH~~~fava~nd-dvVriy~kss-t~pt~Lks~sQrn----------------vtclawRPlsaselavgCr-  161 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATND-DVVRIYDKSS-TCPTKLKSVSQRN----------------VTCLAWRPLSASELAVGCR-  161 (445)
T ss_pred             eeeEeechhhhhhhhhccC-cEEEEeccCC-CCCceecchhhcc----------------eeEEEeccCCcceeeeeec-
Confidence            3467999977778888876 6999999776 4444444333221                37999999654 6777776 


Q ss_pred             CcEEEEecCCcc----cccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEeccCCc
Q psy2110         163 GRIVLWDFLTRG----IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       163 g~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      +-|.+|......    .+.....+......+  .....|++++|++||..+++++. +..|.|||..++..+.......+
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~--pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg  239 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQD--PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG  239 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeC--CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence            459999765321    111111111111110  11247999999999999998875 67899999999887766545567


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDV-LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .+.-+.|||||.+|+++.-|+..++|+. ++....+..-..+.|...+|+|.|+.++++++....++-.           
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl-----------  308 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL-----------  308 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE-----------
Confidence            8899999999999999999999999954 3444444445667999999999999999888655444322           


Q ss_pred             cCCCCceEEEEEeeCCCEEE-EEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--------CcEE
Q psy2110         317 DEDSDLSIVASFDRRGQHVV-TGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--------RLIR  387 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------~~i~  387 (622)
                                .|+.....+. .++......+-|+..-....--+.-.+.+.+++|.|.|.+||+.-..        ..|.
T Consensus       309 ----------~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~  378 (445)
T KOG2139|consen  309 ----------TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHIS  378 (445)
T ss_pred             ----------eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhh
Confidence                      2222111111 22222233344443211111111124677899999999999997543        3366


Q ss_pred             EEecccccccCCCCCCCcceeeeccccceeeeeEEEcC---CCCeEEEeeCCCCeEEEEEC
Q psy2110         388 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG---DGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~d~~i~iwd~  445 (622)
                      +||.+.        .+.....+-+......-..++|+|   +|.+|..+=+ .|.+.-|++
T Consensus       379 ~fdtr~--------sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs-TGriq~ypl  430 (445)
T KOG2139|consen  379 RFDTRK--------SPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS-TGRIQRYPL  430 (445)
T ss_pred             hhcccc--------cCceEEEecccccCCCCceEEeeecccCCcEEEEEec-cCceEeeee
Confidence            676663        111111111222222233456665   4555555443 555655554

>KOG1524|consensus

Probab=99.77  E-value=1.5e-15  Score=142.62  Aligned_cols=245  Identities=11%  Similarity=0.143  Sum_probs=171.5

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee----------------------cccCceEEeecCCceEEEeechh
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK----------------------ASRGNCLLVNTGDRLIRVYNHQE   59 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~----------------------~~~~~~l~~~~~d~~i~~w~~~~   59 (622)
                      ..|-|+.++.....+.+++.+-.+.-|++.+.+..                      -.....++.++.||.+.+.+-..
T Consensus        15 e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~   94 (737)
T KOG1524|consen   15 EKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA   94 (737)
T ss_pred             eeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence            34667888887777766555555555555443211                      11236789999999998887544


Q ss_pred             hhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccc
Q psy2110          60 VLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALD  139 (622)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  139 (622)
                      .......            .+.+.+.|-.|+|||.-|++++.| |.|++|. ++|-+..++.....+|            
T Consensus        95 rVE~sv~------------AH~~A~~~gRW~~dGtgLlt~GED-G~iKiWS-rsGMLRStl~Q~~~~v------------  148 (737)
T KOG1524|consen   95 RVERSIS------------AHAAAISSGRWSPDGAGLLTAGED-GVIKIWS-RSGMLRSTVVQNEESI------------  148 (737)
T ss_pred             hhhhhhh------------hhhhhhhhcccCCCCceeeeecCC-ceEEEEe-ccchHHHHHhhcCcee------------
Confidence            3322111            233445677999999999999986 9999998 4465555555555555            


Q ss_pred             cccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEE
Q psy2110         140 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV  219 (622)
Q Consensus       140 ~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  219 (622)
                           +|++|.|+...++.+.. +.+.|=.+.....+-..+.|.           +.|.++.|++..+++++|+.|-..+
T Consensus       149 -----~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHD-----------GiiL~~~W~~~s~lI~sgGED~kfK  211 (737)
T KOG1524|consen  149 -----RCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHD-----------GLVLSLSWSTQSNIIASGGEDFRFK  211 (737)
T ss_pred             -----EEEEECCCCCceEEecC-CeEEEeecccccceeEEeccC-----------cEEEEeecCccccceeecCCceeEE
Confidence                 69999999887776644 567776666655555555554           4589999999999999999999999


Q ss_pred             EEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         220 LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       220 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      +||. -|..+..-..|..+|++++|.|+ +.++.++. +++|+=.          ...+.|..++|++||.. ++++...
T Consensus       212 vWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~----------p~~GSifnlsWS~DGTQ-~a~gt~~  277 (737)
T KOG1524|consen  212 IWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSS----------PRVGSIFNLSWSADGTQ-ATCGTST  277 (737)
T ss_pred             eecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeeecC----------CCccceEEEEEcCCCce-eeccccC
Confidence            9995 56667777789999999999999 66666654 4455211          13467899999999986 4445555


Q ss_pred             CcEE
Q psy2110         300 HAAV  303 (622)
Q Consensus       300 ~~i~  303 (622)
                      |.+.
T Consensus       278 G~v~  281 (737)
T KOG1524|consen  278 GQLI  281 (737)
T ss_pred             ceEE
Confidence            5443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=6.1e-17  Score=163.25  Aligned_cols=233  Identities=16%  Similarity=0.151  Sum_probs=164.1

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.+||..... .+.+..|...+                 .+.+|+|||+.|+.++.+   ..|++||+.+++......
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v-----------------~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~  245 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPL-----------------MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS  245 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCcc-----------------ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence            689999987544 55667777666                 489999999999987654   369999998875322211


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEE--EcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-C
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLW--DFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-T  256 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~  256 (622)
                      ..            .....++|+|||+.|++++ .+|.+.||  |+.++. ...+..+...+..+.|+|||+.|+.++ .
T Consensus       246 ~~------------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~  312 (429)
T PRK01742        246 FR------------GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDR  312 (429)
T ss_pred             CC------------CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECC
Confidence            11            0123579999999888765 57765555  555554 455666777888999999999887665 4


Q ss_pred             CCcEEEEECCCC-cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEE
Q psy2110         257 DNNVCIWDVLTG-ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHV  335 (622)
Q Consensus       257 d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (622)
                      ++..+||++... .....+.+..  ....|+|+++.+++++.  ..+.+||+.++.........  ....+.|+|+|++|
T Consensus       313 ~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i  386 (429)
T PRK01742        313 SGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMI  386 (429)
T ss_pred             CCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEE
Confidence            677788876432 2223333332  46789999997666554  34667998876543222221  23457899999999


Q ss_pred             EEEecCCeEEEEeC--CCccEEEEEecCCCCEEEEEEcCC
Q psy2110         336 VTGNSKGKVLVLSC--PALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       336 ~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      +.++.++.+.+|.+  .+++.+..+..|.+.+..++|+|-
T Consensus       387 ~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        387 IYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            99999988887775  467888888888888999999985

>KOG0644|consensus

Probab=99.77  E-value=3.2e-18  Score=168.44  Aligned_cols=281  Identities=14%  Similarity=0.220  Sum_probs=221.6

Q ss_pred             hhhhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          74 KLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        74 ~~~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      .+..+.+| ..|+|+.|.-.|.++++|+. |..++||.+.++.++..++||.+.+                 +.++.+.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd-d~lvKiwS~et~~~lAs~rGhs~di-----------------tdlavs~~  243 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD-DRLVKIWSMETARCLASCRGHSGDI-----------------TDLAVSSN  243 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCc-cceeeeeeccchhhhccCCCCcccc-----------------chhccchh
Confidence            33444444 56889999999999999996 4999999999999999999999999                 69999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE--
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK--  230 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~--  230 (622)
                      ..++++++.|..|++|.+.++..+..+.+|..           .|++++|+|-.    +.+.||++++||..-.-.+.  
T Consensus       244 n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----------avtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p  308 (1113)
T KOG0644|consen  244 NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----------AVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP  308 (1113)
T ss_pred             hhhhhhcccCceEEEEecCCCchHHHHhcccc-----------ceeeeccCccc----cCCCCCceEeccccccccccCC
Confidence            99999999999999999999999999999874           59999999954    67889999999986111110  


Q ss_pred             -Eec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         231 -IIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       231 -~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                       .++ ....-+.++.|...+..+++++.|+.-..|.+..-.+.     ...+.-+..+.+-..+.+++-.+..+.+|++.
T Consensus       309 rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~  383 (1113)
T KOG0644|consen  309 RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY  383 (1113)
T ss_pred             CCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecc
Confidence             111 12355777888888899999999998888876532211     11111122222333466677778888999999


Q ss_pred             CCceeecccCCCCceEEEEEeeCCCE-EEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110         309 GDHQIVPIDEDSDLSIVASFDRRGQH-VVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      ++.....+.+|...+..+.++|-+.. ..+++.||...|||+-.+.+++.+......+..-+||++|..++....-|.++
T Consensus       384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~  463 (1113)
T KOG0644|consen  384 TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLY  463 (1113)
T ss_pred             cchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceE
Confidence            99888899999999999999996654 46789999999999999988877664456677889999999998888888898


Q ss_pred             EEecc
Q psy2110         388 VYNHQ  392 (622)
Q Consensus       388 i~d~~  392 (622)
                      |....
T Consensus       464 i~g~g  468 (1113)
T KOG0644|consen  464 ILGTG  468 (1113)
T ss_pred             EeccC
Confidence            88765

>KOG1517|consensus

Probab=99.77  E-value=1.1e-16  Score=161.81  Aligned_cols=288  Identities=14%  Similarity=0.206  Sum_probs=209.0

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC--CCCEEEEEeCCCeEEEE
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~iw  221 (622)
                      ...+.|+|-...++++...-.|+|||.+.++....+..+..+        ...|+.+.+-.  |..++++++.||.|+||
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEe
Confidence            357889999999999987789999999999888777665433        24577777755  45689999999999999


Q ss_pred             EcC-C----CceEEEecc-------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEeC
Q psy2110         222 DFL-T----RGIAKIISA-------HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF--PSPILKVQFHP  287 (622)
Q Consensus       222 d~~-~----~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~  287 (622)
                      +-. +    .+.+..+.+       ..+.-.-+.|.....+|++++.-..|+|||....++...+..  ..-++++.-+-
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL 1218 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc
Confidence            743 2    222322221       112223456777666777777788999999998888877763  45577776665


Q ss_pred             CCCeEEEEeeCCCcEEEEEecCCc---eeecccCCCCc--eEEEEEeeCCCE-EEEEecCCeEEEEeCCCccEEE--EEe
Q psy2110         288 RNDHMFLVCPMRHAAVLVDTDGDH---QIVPIDEDSDL--SIVASFDRRGQH-VVTGNSKGKVLVLSCPALELKA--SFK  359 (622)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~--~~~  359 (622)
                      .+..++++|..||.+++||.+...   .+.....|...  |..+.+.++|-. |++|+.+|.|++||++......  ++.
T Consensus      1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred             cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence            566799999999999999998643   45556667666  888999887754 9999999999999999742222  222


Q ss_pred             cCC--C-CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc--cceeeeeEEEcCCCCeEEEee
Q psy2110         360 AST--T-AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV--NKTMWKKCCFSGDGEYVCAGS  434 (622)
Q Consensus       360 ~~~--~-~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~  434 (622)
                      .|.  + ..+++..++....+|+|+. +.|+||++......       .++......  ......+++|+|---.+|+|+
T Consensus      1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~-------~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN-------IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred             eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc-------ccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence            332  3 5899999999999999988 99999999842211       111111111  123447889999998999997


Q ss_pred             CCCCeEEEEECCCC
Q psy2110         435 ARQHALYIWEKSVG  448 (622)
Q Consensus       435 ~~d~~i~iwd~~~~  448 (622)
                      . |..|.||....+
T Consensus      1371 ~-Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1371 A-DSTVSIYSCEKP 1383 (1387)
T ss_pred             C-CceEEEeecCCc
Confidence            5 999999986644

>KOG0771|consensus

Probab=99.76  E-value=2.1e-17  Score=151.17  Aligned_cols=194  Identities=19%  Similarity=0.197  Sum_probs=157.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--
Q psy2110         198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--  275 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--  275 (622)
                      .+++|+.+|..|++|+.||++|+|+..+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++.+++...  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999988887777788899999999999999999999999 89999999997766554  


Q ss_pred             -CCCCeEEEEEeCCC---Ce-EEEEeeCCCcEEEEEecCCc-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         276 -FPSPILKVQFHPRN---DH-MFLVCPMRHAAVLVDTDGDH-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       276 -~~~~v~~~~~~~~~---~~-~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                       .+.....+.|+.++   .. +++.....+.++.+++....     +..........+.+++.+.+|++++.|+.+|.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             33445667777665   22 22233445567776664322     2233333455789999999999999999999999


Q ss_pred             EEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         346 VLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       346 i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |++..+.+.++-.+ .|...|+.+.|+|+.+++++.+.+....+..+.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999888776554 899999999999999999999999999888776

>KOG0290|consensus

Probab=99.76  E-value=2.4e-16  Score=136.80  Aligned_cols=250  Identities=14%  Similarity=0.232  Sum_probs=182.1

Q ss_pred             EEEeccCCcCeeEEEEcC--C-CCEEEEEeC----CCcEEEEEC--CCCcEEE--EEeCCCCeEEEEEeCCCC----eEE
Q psy2110         229 AKIISAHMHPVCSISWSR--N-GYKIISAST----DNNVCIWDV--LTGECEQ--KYRFPSPILKVQFHPRND----HMF  293 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~--~-~~~l~s~~~----d~~i~iwd~--~~~~~~~--~~~~~~~v~~~~~~~~~~----~~~  293 (622)
                      +..+..+ -++.++.|+.  + ..+|+.|+.    .+.|.|..+  .+++.+.  .|.|+.+++.+.|.|+..    .++
T Consensus        38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            3444433 5677888873  2 346777764    355666544  3455443  356889999999999863    334


Q ss_pred             EEeeCCCcEEEEEecCCcee----e-----cccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCcc---EEEEEec
Q psy2110         294 LVCPMRHAAVLVDTDGDHQI----V-----PIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALE---LKASFKA  360 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~~~----~-----~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~  360 (622)
                      +  +.+..+++|.+......    .     .-..+...+++..|+. +-++|.+.+-|-+..|||++++.   ...++-+
T Consensus       117 A--Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  117 A--TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             h--cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            3  44667999998742111    1     1123455677777765 55788999999999999999863   5778889


Q ss_pred             CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeCCCC
Q psy2110         361 STTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSARQH  438 (622)
Q Consensus       361 ~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~d~  438 (622)
                      |...|..++|...+ +.||+.+.||.||+||++...        ...-.+.....+.+..+++|++ |-+|+|+-..+..
T Consensus       195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             cCcceeEEEeccCccceEEEecCCCcEEEEEecccc--------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            99999999999866 468888999999999999421        1122233344466677888987 5578888777677


Q ss_pred             eEEEEECCC-CeeEEEEecCCCCceeEEEECCCCC-EEEEEe-CCcEEEeecCCc
Q psy2110         439 ALYIWEKSV-GNLVKILHGTKGELLLDVVWHPVRP-IIASIS-SGVVSLWAQNQV  490 (622)
Q Consensus       439 ~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~-dg~v~iw~~~~~  490 (622)
                      .|.|.|++. +.++..|++|.+. |+.++|.|..+ .|++++ |..+.+||+++.
T Consensus       267 ~V~iLDiR~P~tpva~L~~H~a~-VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNHQAS-VNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             eEEEEEecCCCcceehhhcCccc-ccceEecCCCCceeeecCCcceEEEEecccc
Confidence            899999875 6788999999988 99999999865 888999 899999999754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=9.5e-16  Score=154.14  Aligned_cols=237  Identities=14%  Similarity=0.208  Sum_probs=166.8

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ..|.++|...... +.+..+...+.+.+|+|||+.|+..+.   +..|++|++.+++..........+..+.|+|+|+.+
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            3688888765443 445556778999999999999987653   357999999998776655566666789999999988


Q ss_pred             EEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--eEEEEeCCCccEEEEEecCCCCEEE
Q psy2110         293 FLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--KVLVLSCPALELKASFKASTTAIKS  367 (622)
Q Consensus       293 ~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~  367 (622)
                      +++...++  .+++||+.++.... +..+...+....|+|+|+.|+..+.+ +  .|+++++.+++.. .+..+......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~  335 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  335 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence            88766555  58888988765433 33334456788999999988776654 3  4666677766543 34444445667


Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEE
Q psy2110         368 IEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYI  442 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~i  442 (622)
                      ..|+|||++|+..+.+   ..|++||+..       +.   ...+....   ......|+|||++|+.++.+.+  .+++
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-------g~---~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~  402 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLAT-------GG---VQVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNL  402 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCC-------CC---eEEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            8999999999887653   3588888863       11   12222111   1124589999999999887333  4778


Q ss_pred             EECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         443 WEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       443 wd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      +++ +|.....+.+|.+. +..++|+|-
T Consensus       403 ~~~-~G~~~~~l~~~~~~-~~~p~Wsp~  428 (429)
T PRK03629        403 VST-DGRFKARLPATDGQ-VKFPAWSPY  428 (429)
T ss_pred             EEC-CCCCeEECccCCCC-cCCcccCCC
Confidence            887 46667778777766 899999983

>KOG0303|consensus

Probab=99.75  E-value=2e-16  Score=142.99  Aligned_cols=202  Identities=13%  Similarity=0.234  Sum_probs=162.8

Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-------ceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-------HQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVL  347 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~  347 (622)
                      |.++|..+.|+|-+...+++|+.|.++.+|.+...       +++..+.+|...+..++|+|.. +.|++++.|.+|.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW  159 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW  159 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence            78899999999999999999999999999998643       4577788999999999999965 678899999999999


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      |+.+++.+.++. |...|.++.|+.||.+|++++.|..|||||.+.         ...+..-..+.+... ..+.|-.+|
T Consensus       160 nv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---------~~~v~e~~~heG~k~-~Raifl~~g  228 (472)
T KOG0303|consen  160 NVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---------GTVVSEGVAHEGAKP-ARAIFLASG  228 (472)
T ss_pred             eccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC---------CcEeeecccccCCCc-ceeEEeccC
Confidence            999999888888 999999999999999999999999999999983         333333333333322 345788889


Q ss_pred             CeEEEeeC--CCCeEEEEECCCCe---eEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110         428 EYVCAGSA--RQHALYIWEKSVGN---LVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV  490 (622)
Q Consensus       428 ~~l~~~~~--~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~  490 (622)
                      ..+.+|.+  .+..+-+||...-+   .+..+....+  |.-.-|.|+..+|+.++  |+.|+.|.+...
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG--vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG--VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEeccCCc--eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            86655543  26679999876532   2334444333  88888999999999888  999999998643

>KOG0771|consensus

Probab=99.75  E-value=1.1e-16  Score=146.46  Aligned_cols=195  Identities=18%  Similarity=0.241  Sum_probs=152.0

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      .+++|+++|..|++++.| |.+|||++.+...+.....|.++|                 .++.|+|||++|++-+.| .
T Consensus       148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV-----------------~DL~FS~dgk~lasig~d-~  208 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEV-----------------KDLDFSPDGKFLASIGAD-S  208 (398)
T ss_pred             eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCcc-----------------ccceeCCCCcEEEEecCC-c
Confidence            578999999999999986 999999999888888899999998                 499999999999999999 9


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCC---C--EEEEEeCCCeEEEEEcCCCc-----eEEEecc
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG---T--LLAVGCNDGRIVLWDFLTRG-----IAKIISA  234 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~--~l~~~~~dg~i~iwd~~~~~-----~~~~~~~  234 (622)
                      .+||+.++|..+.........         .....|.|+.++   .  .++.....+.|+.|++....     ..++...
T Consensus       209 ~~VW~~~~g~~~a~~t~~~k~---------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  209 ARVWSVNTGAALARKTPFSKD---------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             eEEEEeccCchhhhcCCcccc---------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence            999999999666655532222         235677888887   3  33333445667776654321     1122223


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ....|++++.+.+|++++.|+.||.|-|++..+-++++..+  |..-|+.+.|+|+.+.+ +..+.+....+..+.
T Consensus       280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASVSSDNEAAVTKLA  354 (398)
T ss_pred             ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-cccccCCceeEEEEe
Confidence            34589999999999999999999999999999998888877  78899999999988754 445666666665554

>KOG0642|consensus

Probab=99.75  E-value=1.1e-17  Score=158.23  Aligned_cols=260  Identities=14%  Similarity=0.140  Sum_probs=187.2

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC--------CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--------GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      ...+.+++|.|....|++++.+ |.|.+|+++.        -+++.+|++|.++|+                 |++.+++
T Consensus       294 ~d~ir~l~~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-----------------~v~v~~n  355 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-----------------CVVVPSN  355 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceE-----------------EEEecCC
Confidence            3445578999999999999986 9999999932        257789999999996                 9999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCccccc-ccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGAL-DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      +..+++|+.||+|+.|++....  .....+......+.+ .....++.+++|+....|++++.||++++|+...... .+
T Consensus       356 ~~~~ysgg~Dg~I~~w~~p~n~--dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~  432 (577)
T KOG0642|consen  356 GEHCYSGGIDGTIRCWNLPPNQ--DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT  432 (577)
T ss_pred             ceEEEeeccCceeeeeccCCCC--CcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence            9999999999999999765321  111111111111111 1114578999999999999999999999999866555 33


Q ss_pred             eccCC--cCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeC--------CCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         232 ISAHM--HPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYRF--------PSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       232 ~~~~~--~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      +....  +.-.++.+-... ...++...-+.-.+.++.....+..+..        ...+..+.++|.+. +.+++..++
T Consensus       433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~  511 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDR  511 (577)
T ss_pred             cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCC
Confidence            33222  223444443221 2222222233334445555554444431        13467788888875 788899999


Q ss_pred             cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      .|+++|..++..+.....|...++++++.|+|-+|++++.|+.+++|.+....++.....|.
T Consensus       512 ~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  512 SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            99999999999999999999999999999999999999999999999998777776655553

>KOG2315|consensus

Probab=99.75  E-value=5.7e-15  Score=140.13  Aligned_cols=323  Identities=10%  Similarity=0.185  Sum_probs=215.8

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe----
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG----  159 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~----  159 (622)
                      ....++|++|+++|.+..  ..+.|++..++..+.+....  .+                 +.+.|+|.|.+|.+=    
T Consensus        37 ~~v~~~S~~G~lfA~~~~--~~v~i~~~~~~~~~lt~~~~--~~-----------------~~L~fSP~g~yL~T~e~~~   95 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDN--QVVKVFEIATLKVVLCVELK--KT-----------------YDLLFSPKGNYLLTWEPWA   95 (566)
T ss_pred             ceeEEEcCCCcEEEEEcC--CeEEEEEccCCcEEEEeccc--ee-----------------eeeeecccccccccccccc
Confidence            446899999999999874  68999999888655444433  33                 499999999998762    


Q ss_pred             -eC-----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         160 -CN-----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       160 -~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                       ..     .-.+++|+++++.....+......           -++..|+.|..+.+- -..+.+.+|++.+.+.+ .-+
T Consensus        96 i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-----------~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~k  162 (566)
T KOG2315|consen   96 IYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-----------GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHK  162 (566)
T ss_pred             cccCCCCCCCceeeeeeccceehhheehhhhc-----------Ccccccccchhhhhh-hhcceEEEEecCCccce-eee
Confidence             11     245789999996555555444322           257789988765433 23578999998763322 122


Q ss_pred             cCCcCeeEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         234 AHMHPVCSISWSRNG--YKIIS-----ASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~--~~l~s-----~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      -|...|+.+.+||.+  ..+++     .+.-+.|+||........+.+.    +...-..+.|++.+..+|+.++.+   
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastd---  239 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTD---  239 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEe---
Confidence            356788999999863  33443     2344679999876332222111    334445577887777666654322   


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE--
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN--  380 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--  380 (622)
                                               ++..+.-.   ....+++++++....+...+ ...++|.++.|+|+++.++++  
T Consensus       240 -------------------------VDktn~SY---YGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyG  290 (566)
T KOG2315|consen  240 -------------------------VDKTNASY---YGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYG  290 (566)
T ss_pred             -------------------------ecCCCccc---cccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEe
Confidence                                     11111111   12335777776633333333 336899999999999877665  


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEecCC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      -.-..+.|||++.          .++..+    ...+.+++-|+|.|++|+.++.+  .|.|-|||+.+.+++..+....
T Consensus       291 fMPAkvtifnlr~----------~~v~df----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~  356 (566)
T KOG2315|consen  291 FMPAKVTIFNLRG----------KPVFDF----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN  356 (566)
T ss_pred             cccceEEEEcCCC----------CEeEeC----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC
Confidence            4567899999983          333333    23344668999999999887653  5789999999988888887765


Q ss_pred             CCceeEEEECCCCCEEEEEe-------CCcEEEeecCC
Q psy2110         459 GELLLDVVWHPVRPIIASIS-------SGVVSLWAQNQ  489 (622)
Q Consensus       459 ~~~v~~v~~sp~~~~l~s~~-------dg~v~iw~~~~  489 (622)
                         -+-+.|+|||++++++.       |+.++||++.+
T Consensus       357 ---tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  357 ---TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ---ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence               45689999999988774       57899999974

>KOG2111|consensus

Probab=99.74  E-value=9.9e-15  Score=128.79  Aligned_cols=234  Identities=15%  Similarity=0.218  Sum_probs=170.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC--eeEEEEcCCCCEEE-EEeCC------CcEEEEECCC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP--VCSISWSRNGYKII-SASTD------NNVCIWDVLT  267 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~-s~~~d------~~i~iwd~~~  267 (622)
                      ..+++|+.|..-+++|..+| .+||+.+--+.....+.+.+.  +..+-|  -.++|+ .|+.+      +.|.|||=..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence            45689999999998887655 799998753332222222222  222222  233444 33332      4699999888


Q ss_pred             CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCC--CceEEEEEeeCCCEEEE-EecCCe
Q psy2110         268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDS--DLSIVASFDRRGQHVVT-GNSKGK  343 (622)
Q Consensus       268 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~dg~  343 (622)
                      .+++.++.+..+|.++.+.++.  +++  -..+.|++|... +.+.+..+....  ....+++-..+..+|+. |..-|.
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~r--iVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDR--IVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCe--EEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            8899999999999999999863  333  347789999987 444444444322  22333333333444544 556799


Q ss_pred             EEEEeCCCccE--EEEEecCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110         344 VLVLSCPALEL--KASFKASTTAIKSIEFARRGNCLLVNTGDRL-IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK  420 (622)
Q Consensus       344 i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (622)
                      |.|-|+...+.  ...+.+|...|.+++++.+|..+|++|..|+ |||||..         ....++.++....+..+.+
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~---------~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE---------DGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC---------CCcEeeeeecCCchheEEE
Confidence            99999986655  4778899999999999999999999999988 9999998         5677888888888899999


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      ++|||++.+||+++. .|++.||.+..
T Consensus       232 iaFSp~~s~LavsSd-KgTlHiF~l~~  257 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSD-KGTLHIFSLRD  257 (346)
T ss_pred             EEeCCCccEEEEEcC-CCeEEEEEeec
Confidence            999999999999996 99999998764

>KOG2321|consensus

Probab=99.74  E-value=9.7e-16  Score=145.24  Aligned_cols=285  Identities=15%  Similarity=0.208  Sum_probs=209.5

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      ...+.+..+|||+|+ ++|...-.|++||+.+......-.-....|.-.-.+.|-..++.-..|.+|.+...  +-....
T Consensus        52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak--~G~hy~  129 (703)
T KOG2321|consen   52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK--YGRHYR  129 (703)
T ss_pred             cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh--cCeeee
Confidence            345788999999976 55667889999999875543222222334555555666666777777888876532  223344


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      ++.+..-..++++.-.-.++ .++....++-+++..+.-+..+......+.++..++-..+|++|+.+|.|..||.++..
T Consensus       130 ~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  130 TRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            45555666677765444444 44456678888999999999999988999999999999999999999999999999877


Q ss_pred             EEEEEec------CCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEE
Q psy2110         354 LKASFKA------STT-----AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCC  422 (622)
Q Consensus       354 ~~~~~~~------~~~-----~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (622)
                      .+.++..      |.+     .|+++.|+.+|-.+++|+.+|.+.|||++.         ..++ ....+....++..+.
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa---------~~pl-~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA---------SKPL-LVKDHGYELPIKKLD  278 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc---------CCce-eecccCCccceeeec
Confidence            6666552      222     499999999999999999999999999994         2222 344556677888889


Q ss_pred             EcCCC--CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEe---ecCCccccccc
Q psy2110         423 FSGDG--EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLW---AQNQVENWSAF  496 (622)
Q Consensus       423 ~spdg--~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw---~~~~~~~~~~~  496 (622)
                      |.+.+  ..|++.  +...++|||-.+|+....+....+  ++++++-|++-+++++. ++.+..|   ++.....|++|
T Consensus       279 ~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSf  354 (703)
T KOG2321|consen  279 WQDTDQQNKVVSM--DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSF  354 (703)
T ss_pred             ccccCCCceEEec--chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEccccCCCchhhhH
Confidence            97763  444444  467899999999999888876554  99999999999999998 5554444   44455666544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.1e-15  Score=153.87  Aligned_cols=237  Identities=16%  Similarity=0.198  Sum_probs=162.0

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++...............|+|+++.+
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            35667775 344455566777889999999999999887753   35999999999876655566677789999999988


Q ss_pred             EEEeeCCCcEEEEEe--cCCceeecccCCCCceEEEEEeeCCCEEEEEec-CCeEEEE--eCCCccEEEEEecCCCCEEE
Q psy2110         293 FLVCPMRHAAVLVDT--DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-KGKVLVL--SCPALELKASFKASTTAIKS  367 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~i~~  367 (622)
                      +++...++...+|.+  .+.. ...+..+........|+|||+.|+..+. +|...+|  ++.+++... +..+......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~  332 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTS  332 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCc
Confidence            888777777666655  3333 3444444555567889999998876554 3444555  555554322 2222333456


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEE
Q psy2110         368 IEFARRGNCLLVNTGDR---LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYI  442 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~i  442 (622)
                      .+|+|+|++|+..+.++   .|++||+...       .   ...+...   .......|+|||++|+.++.+++  .+++
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g-------~---~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~  399 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATG-------Q---VTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAA  399 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCC-------C---eEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEE
Confidence            88999999999877654   5999998731       1   1122111   11234699999999998876443  4667


Q ss_pred             EECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         443 WEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       443 wd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      .++ +|.....+..+.+. +...+|+|-
T Consensus       400 ~~~-~g~~~~~l~~~~g~-~~~p~wsp~  425 (427)
T PRK02889        400 VSS-DGRIKQRLSVQGGD-VREPSWGPF  425 (427)
T ss_pred             EEC-CCCceEEeecCCCC-CCCCccCCC
Confidence            777 46666777666665 888999984

>KOG2139|consensus

Probab=99.73  E-value=5.2e-15  Score=132.59  Aligned_cols=301  Identities=14%  Similarity=0.165  Sum_probs=179.9

Q ss_pred             ceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCC-EEEEecCCCCeEEEEEcCCC----c
Q psy2110          41 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVG----N  115 (622)
Q Consensus        41 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~----~  115 (622)
                      ..++++..|.+|++|+-..           +.........+..+.|++|-|.+. .|+.|+ . +-|.+|.....    .
T Consensus       111 ~~fava~nddvVriy~kss-----------t~pt~Lks~sQrnvtclawRPlsaselavgC-r-~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSS-----------TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-R-AGICIWSDSRTLNANR  177 (445)
T ss_pred             hhhhhhccCcEEEEeccCC-----------CCCceecchhhcceeEEEeccCCcceeeeee-c-ceeEEEEcCccccccc
Confidence            3456666677777776542           222223334556678999999754 566666 3 68999987532    2


Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      .++....|...++    .++|+    .+|++|+|++||..+++++. |..|+|||..++..+.......           
T Consensus       178 ~~~~~s~~~~qvl----~~pgh----~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-----------  238 (445)
T KOG2139|consen  178 NIRMMSTHHLQVL----QDPGH----NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-----------  238 (445)
T ss_pred             ccccccccchhhe----eCCCC----ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-----------
Confidence            2233344444443    23333    56799999999999999875 5789999999987665442221           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ..++-+.|||||.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+.+.. |.-++|.+.-...-..+
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~  317 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF  317 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence            34678999999999999999999999965432222222233459999999999998877664 33445543211110011


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC--------eEEE
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG--------KVLV  346 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------~i~i  346 (622)
                      .....+                  .....+.|+..-.....-..-.+...+++|+|.|.++++.-..+        .|.+
T Consensus       318 ~~~~~~------------------k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~  379 (445)
T KOG2139|consen  318 LRPQSI------------------KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISR  379 (445)
T ss_pred             cCcccc------------------eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhh
Confidence            101111                  11122223321111111111245567899999999999865433        4667


Q ss_pred             EeCCCccEEEEEe-c--CCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecc
Q psy2110         347 LSCPALELKASFK-A--STTAIKSIEFAR---RGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       347 ~d~~~~~~~~~~~-~--~~~~i~~~~~s~---~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ||.+..-.+.-.. +  ....-..+.|+|   ++.+|.++=+.|.+.-|++.
T Consensus       380 fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  380 FDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             hcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            8776544333221 0  011123455554   56667777677888888775

>KOG1272|consensus

Probab=99.73  E-value=2.1e-17  Score=152.37  Aligned_cols=266  Identities=14%  Similarity=0.179  Sum_probs=212.1

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ..+.++.+|+.|+.|+.-|.|..+|..++.+...+....            .|..+.|-.+.+++|++ ....++||| .
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E------------tv~Dv~~LHneq~~AVA-QK~y~yvYD-~  198 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME------------TVRDVTFLHNEQFFAVA-QKKYVYVYD-N  198 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehhh------------hhhhhhhhcchHHHHhh-hhceEEEec-C
Confidence            488999999999999999999999999987776665442            47788998888888877 467899999 5


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .|..+++++.| ..|..+.|-|.--+|++++..|.++.-|+.+|+.+..+. ..+.+..++-+|-+. ++-+|..+|+|.
T Consensus       199 ~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVS  276 (545)
T KOG1272|consen  199 NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVS  276 (545)
T ss_pred             CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEE
Confidence            77888888876 678999999998899999999999999999999998887 456777778888654 778899999999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      +|......++..+..|.+.|.++++.++|+++++.+.|..++|||+++...+.++.. ..+...+++|..|  +++.+..
T Consensus       277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G  353 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYG  353 (545)
T ss_pred             ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecC
Confidence            999999999999999999999999999999999999999999999999887776665 4566778888766  4445555


Q ss_pred             CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         384 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      ..|.||.-.-      .+.+..-..+..+.....+..+.|.|-...|-.|-.
T Consensus       354 ~~v~iw~d~~------~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~  399 (545)
T KOG1272|consen  354 DHVQIWKDAL------KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA  399 (545)
T ss_pred             Ceeeeehhhh------cCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence            6889995331      111112222233333346667788887776665554

>KOG1272|consensus

Probab=99.73  E-value=1.9e-17  Score=152.70  Aligned_cols=269  Identities=15%  Similarity=0.231  Sum_probs=214.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  276 (622)
                      ...+.++.+|++|+.|+..|.+..+|..+++....+.- ...|..+.|-.+.++||++- ...++||| ..|..+..+..
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~  208 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKR  208 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhh
Confidence            46789999999999999999999999999998877764 46788999998888888775 57899999 56888888888


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                      ...|..+.|.|.. .++++++..|.+...|+..++.+..+....+.+..++-+|-+..+-+|...|+|.+|.....+++.
T Consensus       209 ~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv  287 (545)
T KOG1272|consen  209 HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV  287 (545)
T ss_pred             cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH
Confidence            8899999999965 578888999999999999999999999889999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR  436 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  436 (622)
                      .+..|.++|.++++.++|+++++++.|+.++|||++..         ..+..+..   ..+...++||..|- ||++-  
T Consensus       288 KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---------~ql~t~~t---p~~a~~ls~Sqkgl-LA~~~--  352 (545)
T KOG1272|consen  288 KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---------YQLHTYRT---PHPASNLSLSQKGL-LALSY--  352 (545)
T ss_pred             HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---------cccceeec---CCCccccccccccc-eeeec--
Confidence            99999999999999999999999999999999999942         22222322   22334568886653 44443  


Q ss_pred             CCeEEEEE-CCCC--eeEEEEecC-CCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110         437 QHALYIWE-KSVG--NLVKILHGT-KGELLLDVVWHPVRPIIASIS-SGVVSL  484 (622)
Q Consensus       437 d~~i~iwd-~~~~--~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~-dg~v~i  484 (622)
                      ...+.||. ...+  .....+-.| .+.+|.++.|.|-...|-.+. .|.-.|
T Consensus       353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence            33699995 2221  111111112 123599999999988888776 454333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=4.3e-15  Score=150.51  Aligned_cols=236  Identities=14%  Similarity=0.189  Sum_probs=167.1

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ..|.++|.. +...+.+..|...+.+++|+|||+.|+..+.   +..|++||+.+++......+...+....|+|+|+.+
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence            478888874 4445667778889999999999999988764   468999999998876655577778889999999988


Q ss_pred             EEEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-C--CeEEEEeCCCccEEEEEecCCCCEEE
Q psy2110         293 FLVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-K--GKVLVLSCPALELKASFKASTTAIKS  367 (622)
Q Consensus       293 ~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~  367 (622)
                      +++...++.  |+++|+.++.. ..+..+........|+|+|+.|+..+. +  ..|+++|+..++.. .+..+...+..
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~  338 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYST  338 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccC
Confidence            888776665  67778776544 334445555667899999999887664 3  36888898766543 34434455677


Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC-----Ce
Q psy2110         368 IEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ-----HA  439 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d-----~~  439 (622)
                      ..|+|+|++|+..+.+   ..|.+|++..          ...+.+...   .......|+|||++|+..+...     ..
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~----------~~~~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDG----------SGERILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCC----------CceEeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            8999999999887653   3577788652          111222111   1234569999999998765422     36


Q ss_pred             EEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         440 LYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       440 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      ++++++..++. ..+.. .+. +...+|+|-
T Consensus       406 L~~~dl~g~~~-~~l~~-~~~-~~~p~Wsp~  433 (435)
T PRK05137        406 LYTVDLTGRNE-REVPT-PGD-ASDPAWSPL  433 (435)
T ss_pred             EEEEECCCCce-EEccC-CCC-ccCcccCCC
Confidence            88999876654 45543 333 778899874

>KOG2394|consensus

Probab=99.73  E-value=1.4e-15  Score=143.09  Aligned_cols=243  Identities=16%  Similarity=0.246  Sum_probs=164.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE------EEeccCCcC----eeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA------KIISAHMHP----VCSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                      +....++-.|.+|+..- ...+++|+...+..+      +.+++ ..+    .+...-.+.+--++.|-.-|.|.+.|..
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            34445555677776553 456888887743211      11221 111    1222224566678888888999999877


Q ss_pred             CCcEEEEEe-----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC
Q psy2110         267 TGECEQKYR-----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       267 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  341 (622)
                      ..+..+.+.     ....++++.|-|.++.+++++-.++.+++||.......        .-.+....+++..+......
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~--------t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA--------TAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC--------CCCcccccCCCCeeEEeeee
Confidence            644333332     34789999999999999999999999999987321100        00011222344444443221


Q ss_pred             CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE
Q psy2110         342 GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC  421 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (622)
                      +      ..+..++..+....+.|+.++|+|||++||+.+.||.+||||....         ..+-.++...  ....++
T Consensus       276 s------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYF--GGLLCv  338 (636)
T KOG2394|consen  276 S------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYF--GGLLCV  338 (636)
T ss_pred             c------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhc--cceEEE
Confidence            1      1223556666666679999999999999999999999999999841         2222222222  345789


Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      +|||||+||++|+. |-.|.||.+..++.++.-+||... |..|+|.
T Consensus       339 cWSPDGKyIvtGGE-DDLVtVwSf~erRVVARGqGHkSW-Vs~VaFD  383 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGE-DDLVTVWSFEERRVVARGQGHKSW-VSVVAFD  383 (636)
T ss_pred             EEcCCccEEEecCC-cceEEEEEeccceEEEeccccccc-eeeEeec
Confidence            99999999999998 668999999999999999999987 9999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.8e-15  Score=152.93  Aligned_cols=236  Identities=15%  Similarity=0.215  Sum_probs=165.3

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ..|.+||... ...+.+..+...+.+++|+|||+.|+..+.+   ..|++||+.+++........+...++.|+|+++.+
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence            4688898754 4445566777889999999999999988743   46999999988876655556666688999999988


Q ss_pred             EEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-CC--eEEEEeCCCccEEEEEecCCCCEEE
Q psy2110         293 FLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-KG--KVLVLSCPALELKASFKASTTAIKS  367 (622)
Q Consensus       293 ~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~  367 (622)
                      +++.+.++  .+++||+.++.. ..+..+.......+|+|+|+.|+..+. +|  .|+++++.+++... +..+......
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~  340 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR  340 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence            87776655  588899887654 334444445567899999998887664 34  47777877766433 3233344557


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--CCeEEE
Q psy2110         368 IEFARRGNCLLVNTGDR---LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--QHALYI  442 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--d~~i~i  442 (622)
                      ++|+|+|++|+..+.++   .|.+||+..       +.   ...+...   .......|+|||++|+..+..  ...|++
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------g~---~~~Lt~~---~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLST-------GS---VRTLTPG---SLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCC-------CC---eEECCCC---CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            89999999998876433   589999863       11   1122111   112345899999998877653  346888


Q ss_pred             EECCCCeeEEEEecCCCCceeEEEECC
Q psy2110         443 WEKSVGNLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       443 wd~~~~~~~~~~~~~~~~~v~~v~~sp  469 (622)
                      +++. |.....+..+.+. +..++|+|
T Consensus       408 ~~~~-g~~~~~l~~~~g~-~~~p~wsp  432 (433)
T PRK04922        408 VSTD-GRVRQRLVSADGE-VREPAWSP  432 (433)
T ss_pred             EECC-CCceEEcccCCCC-CCCCccCC
Confidence            8885 4456666655554 78889987

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.73  E-value=2.2e-14  Score=134.48  Aligned_cols=340  Identities=13%  Similarity=0.156  Sum_probs=232.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      .+..++|||.|.+|++...  ..|.+|.-.....+.++...  .|                 ..+.|+|.+++|.+=+..
T Consensus        34 p~~~~~~SP~G~~l~~~~~--~~V~~~~g~~~~~l~~~~~~--~V-----------------~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHA--AGVECWGGPSKAKLVRFRHP--DV-----------------KYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             chhheeecCcchheehhhc--cceEEccccchhheeeeecC--Cc-----------------eecccCcccceeeeeccC
Confidence            3456899999999998875  47999998777655555532  23                 488999999999986543


Q ss_pred             ---------------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy2110         163 ---------------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       163 ---------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                                     ..+.+||+.+|..+..+.....+..        .-.-+.|+-+.+++|-- ....++|+++ ++.
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~--------~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n  162 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL--------GWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN  162 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCccc--------ccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence                           3599999999988887766544310        11257888888877655 3457999997 433


Q ss_pred             eE-EEeccC-CcCeeEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110         228 IA-KIISAH-MHPVCSISWSRNG--YKIIS-----ASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       228 ~~-~~~~~~-~~~v~~~~~s~~~--~~l~s-----~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      .. ..+... ...|....|+|.+  ..|+.     .+..+++++|.+..+..+.+.. +...-..+.|++.|..+++..-
T Consensus       163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~  242 (561)
T COG5354         163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM  242 (561)
T ss_pred             cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence            21 111111 2568888999854  34443     3557889999998777766655 4444557889999987766432


Q ss_pred             ----------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE--EecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         298 ----------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT--GNSKGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       298 ----------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                                ....++++++......... ...+.|...+|.|.++.+++  |-..-.+.++|++.. +...  .....=
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~r  318 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKR  318 (561)
T ss_pred             EeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCccc
Confidence                      1245778887744333333 55788999999999887665  446778999998855 3333  333445


Q ss_pred             EEEEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC-----CC
Q psy2110         366 KSIEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA-----RQ  437 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----~d  437 (622)
                      +.+.|+|.++++++++-|   |.|-+|+...        ....+..+.+.    ...-|.|||||+++.+...     .|
T Consensus       319 NT~~fsp~~r~il~agF~nl~gni~i~~~~~--------rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~D  386 (561)
T COG5354         319 NTIFFSPHERYILFAGFDNLQGNIEIFDPAG--------RFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVD  386 (561)
T ss_pred             ccccccCcccEEEEecCCccccceEEeccCC--------ceEEEEEeecC----CceEeeccCCceEEEecCCCcccccC
Confidence            678899999999998765   6799999873        22222233222    2234689999999987653     26


Q ss_pred             CeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         438 HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       438 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ..|.|||+......        + .+.+.|.|.+++..+.+
T Consensus       387 n~i~l~~v~g~~~f--------e-l~~~~W~p~~~~~ttsS  418 (561)
T COG5354         387 NSIKLWDVYGAKVF--------E-LTNITWDPSGQYVTTSS  418 (561)
T ss_pred             cceEEEEecCchhh--------h-hhhccccCCcccceeec
Confidence            78999998644322        2 67788888888766655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5.1e-15  Score=148.85  Aligned_cols=236  Identities=16%  Similarity=0.161  Sum_probs=163.1

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC---CCcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.+||...... +.+..+...+                 .+.+|||||+.|+..+.   +..|.+|++.+++......
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~-----------------~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~  240 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPL-----------------MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS  240 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCce-----------------eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC
Confidence            4788898875544 3344444445                 48999999999887542   4579999998875433221


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEEE-eCCC--eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDG--RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD  257 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  257 (622)
                      ..            ..+..++|+|||+.|+.. +.+|  .|++||+.+++..+ +..+...+....|+|||+.|+..+.+
T Consensus       241 ~~------------~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~  307 (429)
T PRK03629        241 FP------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQ  307 (429)
T ss_pred             CC------------CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCC
Confidence            11            113457999999988865 3344  58899998876544 44445677899999999999887764


Q ss_pred             -C--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         258 -N--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       258 -~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                       +  .|+++|+.+++..+............|+|+|+.+++++..++  .+.+||+.++.... +... .......|+|||
T Consensus       308 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG  385 (429)
T PRK03629        308 AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNG  385 (429)
T ss_pred             CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCC
Confidence             3  456667777766544444445667899999998877765544  57788887664332 2211 223457899999


Q ss_pred             CEEEEEecCCe---EEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         333 QHVVTGNSKGK---VLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       333 ~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      +.|+.++.++.   +.++++ ++.....+..|.+.+...+|+|-
T Consensus       386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            99999887763   677776 46666777778888899999873

>KOG2314|consensus

Probab=99.72  E-value=1.3e-14  Score=137.14  Aligned_cols=319  Identities=13%  Similarity=0.201  Sum_probs=216.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----------  214 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------  214 (622)
                      +-+.|||.|.||+|--.-| |.+|--.+-..++.+...             .|.-+.|||..+||++-+.          
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-------------~Vq~idfSP~EkYLVT~s~~p~~~~~~d~  279 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-------------GVQFIDFSPNEKYLVTYSPEPIIVEEDDN  279 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-------------CceeeecCCccceEEEecCCccccCcccC
Confidence            5789999999999987755 899976665555555433             3778899999999998643          


Q ss_pred             -CCeEEEEEcCCCceEEEeccC--CcCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCC
Q psy2110         215 -DGRIVLWDFLTRGIAKIISAH--MHPVC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRN  289 (622)
Q Consensus       215 -dg~i~iwd~~~~~~~~~~~~~--~~~v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  289 (622)
                       ...+.|||+.+|...+.+...  ...+. -+.||.|++++|.... .+|.||+..+-..+..-. ....|....|+|.+
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~  358 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS  358 (698)
T ss_pred             CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc
Confidence             256999999999988887652  22222 4689999999998876 568999876633332222 34678889999987


Q ss_pred             CeEEEEeeCC----CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-------C---CeEEEEeCCCccEE
Q psy2110         290 DHMFLVCPMR----HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-------K---GKVLVLSCPALELK  355 (622)
Q Consensus       290 ~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------d---g~i~i~d~~~~~~~  355 (622)
                      ..+++-....    ..+.+..+.+.+.+.....+.-.-..+.|-.+|.+|+.--.       .   ..+.|+.++.....
T Consensus       359 ~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp  438 (698)
T KOG2314|consen  359 NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP  438 (698)
T ss_pred             ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence            7544443322    24566677777666666555544456778888888876321       1   13455555544422


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         356 ASFKASTTAIKSIEFARRGNCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       356 ~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ...-.-...|...+|-|.|..+++-+.   ..++.+|.+..     ....+..+..+..    ...+.+.|||.|++++.
T Consensus       439 ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~-----~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  439 VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET-----NIKKPSLVKELDK----KFANTVFWSPKGRFVVV  509 (698)
T ss_pred             ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec-----CCCchhhhhhhcc----cccceEEEcCCCcEEEE
Confidence            222233467889999999998887654   46799998873     1223344444433    34467899999999987


Q ss_pred             eeC--CCCeEEEEECCCCeeEEEE-ecCCCCceeEEEECCCCCEEEEEe-------CCcEEEeecCC
Q psy2110         433 GSA--RQHALYIWEKSVGNLVKIL-HGTKGELLLDVVWHPVRPIIASIS-------SGVVSLWAQNQ  489 (622)
Q Consensus       433 ~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~s~~-------dg~v~iw~~~~  489 (622)
                      +.-  ..|.+.++|+.-..+..+- ..|..  .+.+.|.|.|+++++++       |.-.+||++.+
T Consensus       510 a~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            643  2788999998743332222 22332  78899999999999885       34578888864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=5.6e-13  Score=130.41  Aligned_cols=295  Identities=16%  Similarity=0.186  Sum_probs=190.1

Q ss_pred             EEEeeCC----CcEEEEec--CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----CCeEEEEEcCC
Q psy2110         156 LAVGCND----GRIVLWDF--LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DGRIVLWDFLT  225 (622)
Q Consensus       156 l~s~~~d----g~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~iwd~~~  225 (622)
                      +++|+..    +.|.+|++  .+++... .....         .......++++|++++|++...    .+.|..|.+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~-~~~~~---------~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~   71 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTL-VQTVA---------EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP   71 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEE-EEEEE---------ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceE-eeeec---------CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC
Confidence            4455554    68999988  3333221 11110         1123567899999999999876    57899999876


Q ss_pred             C--c--eEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC-CcEEEE---EeC-----------CCCeEEEEE
Q psy2110         226 R--G--IAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLT-GECEQK---YRF-----------PSPILKVQF  285 (622)
Q Consensus       226 ~--~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~~~~~---~~~-----------~~~v~~~~~  285 (622)
                      .  +  .+............++++|++++|+++.. +|.|.++++.. +.....   +.+           .....++.+
T Consensus        72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~  151 (345)
T PF10282_consen   72 DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF  151 (345)
T ss_dssp             TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred             CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence            4  2  22333333456678999999999998875 78999999987 443332   221           245788999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEecCCce-e---ec-ccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCC--Ccc--EE
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDTDGDHQ-I---VP-IDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCP--ALE--LK  355 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~  355 (622)
                      +|+++.++++.-....|.+|++..... +   .. ..........++|+|+++++++.+ .++.|.++++.  ++.  .+
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            999999888887788999999976541 1   11 123445567899999999887765 46789999887  443  22


Q ss_pred             EEEecC------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         356 ASFKAS------TTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       356 ~~~~~~------~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      ..+...      ......|+++|||++|+++.. .+.|.+|+++.     ..+....+..+..  .......++++|+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~-----~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP-----ATGTLTLVQTVPT--GGKFPRHFAFSPDGR  304 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT-----TTTTEEEEEEEEE--SSSSEEEEEE-TTSS
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec-----CCCceEEEEEEeC--CCCCccEEEEeCCCC
Confidence            233211      125788999999999888764 67899999952     0122222222221  122246789999999


Q ss_pred             eEEEeeCCCCeEEEEEC--CCCeeEEEEecCCCCceeEEEE
Q psy2110         429 YVCAGSARQHALYIWEK--SVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                      +|+++...++.|.+|++  ++|.+...-....-....||.|
T Consensus       305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            99999987889999976  5777654432222122677766

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1523|consensus

Probab=99.70  E-value=3.1e-15  Score=131.94  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=164.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCcE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV-LTGEC  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~-~~~~~  270 (622)
                      ..|+|.+|++|+..+|++.....|.||.....+   ..++++.|...|+.++|+|..+.|++++.|..-++|.. ..++.
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W   90 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW   90 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence            358999999999999999999999999987654   66889999999999999999999999999999999998 44432


Q ss_pred             ---EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee----ecccCCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         271 ---EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI----VPIDEDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       271 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                         +..+++...++++.|+|.++ .|++++....|.++-......-    .....+...|.++.|+|++-++++|+.|+.
T Consensus        91 kptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   91 KPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             ccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence               34456889999999999876 5888888888888887654322    223345677899999999999999999999


Q ss_pred             EEEEeCC------------------CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         344 VLVLSCP------------------ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       344 i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .++|..-                  -|+++..+....+.+..+.|+|+|..|+..+.|..+.+-|..
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence            9998641                  134445555667889999999999999999999999999877

>KOG1523|consensus

Probab=99.70  E-value=5.2e-15  Score=130.52  Aligned_cols=202  Identities=13%  Similarity=0.160  Sum_probs=156.4

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ..++|.+|++|+..+|.+... +.|.||.....+   ..++++.|...+                 +.+.|+|..+.|++
T Consensus        11 ~pitchAwn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~v-----------------tgvdWap~snrIvt   72 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIV-----------------TGVDWAPKSNRIVT   72 (361)
T ss_pred             CceeeeeecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcce-----------------eEEeecCCCCceeE
Confidence            456799999999999999875 799999886554   678899999988                 59999999999999


Q ss_pred             eeCCCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE----EEec
Q psy2110         159 GCNDGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA----KIIS  233 (622)
Q Consensus       159 ~~~dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~----~~~~  233 (622)
                      |+.|..-+||.. ..+.-..++..-...         ..++++.|+|.++.+|+|+....|.||-++...--    +.-+
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiN---------rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk  143 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRIN---------RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK  143 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEec---------cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC
Confidence            999999999998 444333332221111         35789999999999999999999999987654321    2334


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-----C-------------CcEEEEE-eCCCCeEEEEEeCCCCeEEE
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-----T-------------GECEQKY-RFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~~~~~~~~~~  294 (622)
                      .+...|.+++|+|++-+|++|+.|+..+++..-     .             |+.+..+ ...+.+..+.|+|.|.. ++
T Consensus       144 PirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~-la  222 (361)
T KOG1523|consen  144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR-LA  222 (361)
T ss_pred             ccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE-ee
Confidence            567889999999999999999999999998642     1             2233333 35577999999999986 45


Q ss_pred             EeeCCCcEEEEEecCCc
Q psy2110         295 VCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~  311 (622)
                      -.+.|..+.+-|...+.
T Consensus       223 wv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  223 WVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EecCCCceEEeecCCCc
Confidence            55677888888876653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.70  E-value=3.7e-14  Score=132.99  Aligned_cols=313  Identities=11%  Similarity=0.156  Sum_probs=217.5

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND---------  215 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------  215 (622)
                      ..+.|||.|.+|++.... .|.+|.-..+..+..+...             .|..+.|+|.+++|.+-+..         
T Consensus        36 ~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~-------------~V~~~~fSP~~kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          36 AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHP-------------DVKYLDFSPNEKYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             hheeecCcchheehhhcc-ceEEccccchhheeeeecC-------------CceecccCcccceeeeeccCCccChhhcc
Confidence            588999999999988764 5999988776644444332             47889999999999986543         


Q ss_pred             ------CeEEEEEcCCCceEEEeccCCcC--ee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-EEe--CCCCeEEE
Q psy2110         216 ------GRIVLWDFLTRGIAKIISAHMHP--VC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQ-KYR--FPSPILKV  283 (622)
Q Consensus       216 ------g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~v~~~  283 (622)
                            ..+.+||+.++..+..+.....+  .+ -+.|+.+.+++|-.. ...+.|+++ ++.... .+.  ....+...
T Consensus       102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF  179 (561)
T COG5354         102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDF  179 (561)
T ss_pred             CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeE
Confidence                  34899999999999888776555  55 678898888777663 457999997 433221 111  23568888


Q ss_pred             EEeCCCCe--EEEE----eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe-----------cCCeEEE
Q psy2110         284 QFHPRNDH--MFLV----CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-----------SKGKVLV  346 (622)
Q Consensus       284 ~~~~~~~~--~~~~----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~dg~i~i  346 (622)
                      .|+|.+++  +++.    ......+++|.+.....+....-..-.-..+.|.+.|+++++-.           ....+++
T Consensus       180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            99997433  2222    24566788898876655544443333344678888888876521           1235778


Q ss_pred             EeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc
Q psy2110         347 LSCPALELKASFKASTTAIKSIEFARRGNCLLVNT--GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS  424 (622)
Q Consensus       347 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  424 (622)
                      +++....+.... .-.++|..++|.|.++.+++.+  .+-.+.++|++.           .+...   .....-+.+.||
T Consensus       260 ~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~-----------Nl~~~---~Pe~~rNT~~fs  324 (561)
T COG5354         260 LRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG-----------NLRFY---FPEQKRNTIFFS  324 (561)
T ss_pred             Eeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc-----------ceEEe---cCCccccccccc
Confidence            887744333222 5578999999999998887765  578899999883           11111   112223457999


Q ss_pred             CCCCeEEEeeCC--CCeEEEEECCCCeeEE-EEecCCCCceeEEEECCCCCEEEEEe-------CCcEEEeecCCcc
Q psy2110         425 GDGEYVCAGSAR--QHALYIWEKSVGNLVK-ILHGTKGELLLDVVWHPVRPIIASIS-------SGVVSLWAQNQVE  491 (622)
Q Consensus       425 pdg~~l~~~~~~--d~~i~iwd~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~s~~-------dg~v~iw~~~~~~  491 (622)
                      |.++|++.++-+  .|.+-+|+......+. .+.+..   ..-+.|+|+++++.+..       |..+.||++.+..
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            999999987653  4789999987665444 566554   45678999999887652       5789999997643

>KOG2314|consensus

Probab=99.70  E-value=4.6e-14  Score=133.50  Aligned_cols=311  Identities=14%  Similarity=0.229  Sum_probs=210.8

Q ss_pred             eEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccce
Q psy2110           5 IVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW   84 (622)
Q Consensus         5 ~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (622)
                      +-+.|||-|.||+|--..| |.+|-                           -            .....++.+.| ..+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWG---------------------------G------------~~f~r~~RF~H-p~V  252 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWG---------------------------G------------ESFDRIQRFYH-PGV  252 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeec---------------------------C------------ccHHHHHhccC-CCc
Confidence            4578888888888866544 45552                           2            13333444433 345


Q ss_pred             eEEEEcCCCCEEEEecC----------CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          85 KKCCFSGDGEYVCAGSA----------RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~----------~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      .-+.|||+.+||++-+.          +...++|||+.+|...+.|....+...              .-.-..||.|++
T Consensus       253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--------------~WP~frWS~DdK  318 (698)
T KOG2314|consen  253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--------------KWPIFRWSHDDK  318 (698)
T ss_pred             eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--------------ccceEEeccCCc
Confidence            56899999999999654          125799999999999998877433221              002568999999


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----CCeEEEEEcCCCceE
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIA  229 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iwd~~~~~~~  229 (622)
                      ++|--.. ..|.||+..+..++..-...           ++.|....|+|.+++||.-..     -..+.+..+.+++.+
T Consensus       319 y~Arm~~-~sisIyEtpsf~lld~Kslk-----------i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  319 YFARMTG-NSISIYETPSFMLLDKKSLK-----------ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI  386 (698)
T ss_pred             eeEEecc-ceEEEEecCceeeecccccC-----------CccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence            9998776 47999987663332211111           145788899999999987643     245777888888888


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeC----------CCcEEEEECCCCc-EEEEEeCCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISAST----------DNNVCIWDVLTGE-CEQKYRFPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      ++..-|.-.-..+-|-.+|.+|..--.          -..+.|+.++... ++........|...+|-|.|+.+.+..+.
T Consensus       387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence            777666555567788888888875321          1236666665443 34555677889999999999987776654


Q ss_pred             C--CcEEEEEecCC-c-eeecccCCCCceEEEEEeeCCCEEEEE---ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEc
Q psy2110         299 R--HAAVLVDTDGD-H-QIVPIDEDSDLSIVASFDRRGQHVVTG---NSKGKVLVLSCPALELKASFKASTTAIKSIEFA  371 (622)
Q Consensus       299 ~--~~i~~~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  371 (622)
                      .  .++.+|.+.+. . ............+.+.|+|.|++++++   +..|.+.++|+....+...-.......+.+.|.
T Consensus       467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWD  546 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWD  546 (698)
T ss_pred             ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceEC
Confidence            3  46788887732 1 111122233556789999999999875   456889999987533333322223456788999


Q ss_pred             CCCCEEEEEeC
Q psy2110         372 RRGNCLLVNTG  382 (622)
Q Consensus       372 ~~~~~l~~~~~  382 (622)
                      |.|+|+++++.
T Consensus       547 PtGRYvvT~ss  557 (698)
T KOG2314|consen  547 PTGRYVVTSSS  557 (698)
T ss_pred             CCCCEEEEeee
Confidence            99999999875

>KOG1240|consensus

Probab=99.69  E-value=4.9e-15  Score=152.51  Aligned_cols=321  Identities=15%  Similarity=0.170  Sum_probs=189.6

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--c
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--N  115 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~  115 (622)
                      ++.++++|+.||+|++|+.....     ++....+...++. ..+.+.++.+.+++..+|+++.| |.|.+.+++..  +
T Consensus      1060 ~~s~FvsgS~DGtVKvW~~~k~~-----~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D-G~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLE-----GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD-GSVRVLRIDHYNVS 1133 (1431)
T ss_pred             CCceEEEecCCceEEEeeehhhh-----cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC-CeEEEEEccccccc
Confidence            33555555555555555554321     1111222222222 44556788899999999999764 99999988652  1


Q ss_pred             -----eEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-C-CEEEEeeCCCcEEEEecCCcccccccccccCCCcc
Q psy2110         116 -----LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-G-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFD  188 (622)
Q Consensus       116 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  188 (622)
                           ..+....+.....               |..-+|... + ..|+.+..-+.|..||+........++.....   
T Consensus      1134 ~~~~~~~ri~n~~~~g~v---------------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h--- 1195 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVV---------------VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH--- 1195 (1431)
T ss_pred             cceeeeeecccccCCCce---------------EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc---
Confidence                 1111222222221               123333332 2 37888888899999999887665555443322   


Q ss_pred             cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcC---CCCEEEEEeC--CCcEEE
Q psy2110         189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSR---NGYKIISAST--DNNVCI  262 (622)
Q Consensus       189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~---~~~~l~s~~~--d~~i~i  262 (622)
                            +.|++++.+|.+++++.|+..|.+.+||++=+.++..+. ++..++..+..+|   .....++++.  .+.|.+
T Consensus      1196 ------G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1196 ------GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             ------cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence                  468999999999999999999999999999887776654 4557788887776   2345555544  578999


Q ss_pred             EECCCCcEEEEEeCCCCeE-------------------EEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccCCCCc
Q psy2110         263 WDVLTGECEQKYRFPSPIL-------------------KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDEDSDL  322 (622)
Q Consensus       263 wd~~~~~~~~~~~~~~~v~-------------------~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~  322 (622)
                      |++.+|.+...+.....+.                   ..+--+++..++++++.|..|+.||....... ....+....
T Consensus      1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred             eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence            9999998777765321111                   11222345568899999999999998765433 112111111


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEE-E-----eCCCccEEEE--------EecCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLV-L-----SCPALELKAS--------FKASTTAIKSIEFARRG-NCLLVNTGDRLIR  387 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i-~-----d~~~~~~~~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~  387 (622)
                      ......+. +..++.|+.--...+ .     +...+.....        -..|...|+++++.... .+|++++.||.|+
T Consensus      1350 ~~~~~~s~-~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Ik 1428 (1431)
T KOG1240|consen 1350 YSTNSESY-DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIK 1428 (1431)
T ss_pred             ccccchhc-cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeee
Confidence            11111111 111222211000000 0     0000001111        12577889999886554 5788889999999


Q ss_pred             EEe
Q psy2110         388 VYN  390 (622)
Q Consensus       388 i~d  390 (622)
                      ||.
T Consensus      1429 iWk 1431 (1431)
T KOG1240|consen 1429 IWK 1431 (1431)
T ss_pred             ecC
Confidence            994

>KOG1334|consensus

Probab=99.69  E-value=7e-16  Score=143.38  Aligned_cols=295  Identities=17%  Similarity=0.248  Sum_probs=215.4

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                      +...|..|.+.+                 ..+.|+..|..|++|+.|..|.+||...+.....+.....          .
T Consensus       134 l~~kL~~H~GcV-----------------ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~----------~  186 (559)
T KOG1334|consen  134 LQKKLNKHKGCV-----------------NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC----------N  186 (559)
T ss_pred             hhhcccCCCCcc-----------------ceeeecccCceeeccCccceEEeehhhccCcccccccccc----------c
Confidence            345667788777                 4999999999999999999999999998877666543321          1


Q ss_pred             ceEEEEECC--CCCEEEEEeCCCeEEEEEcCC-Cce--EEEeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q psy2110         196 LAVTCAFNK--RGTLLAVGCNDGRIVLWDFLT-RGI--AKIISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       196 ~v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      .|....|-|  +.+.+++++.||.+++=.+.. +.+  ...+..|.++|.-++.-|+. ..|++++.|+.+.-+|++++.
T Consensus       187 NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~  266 (559)
T KOG1334|consen  187 NVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV  266 (559)
T ss_pred             chhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC
Confidence            233444555  335688899999999877653 332  34566899999999999854 578999999999999998876


Q ss_pred             EEEEEe----CCC---CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee------ecc------cCCCCceEEEEEee
Q psy2110         270 CEQKYR----FPS---PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI------VPI------DEDSDLSIVASFDR  330 (622)
Q Consensus       270 ~~~~~~----~~~---~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~------~~~~~~~~~~~~~~  330 (622)
                      +...+.    ...   ....++..|.+.+.+++++.+..+++||.+.-...      ..+      ....-.|++++|+.
T Consensus       267 pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  267 PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence            544432    222   46788999999999999999999999998753211      111      13345689999998


Q ss_pred             CCCEEEEEecCCeEEEEeCCC--c----------cEEEE-EecCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEecccc
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPA--L----------ELKAS-FKASTT--AIKSIEF-ARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~--~----------~~~~~-~~~~~~--~i~~~~~-s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                      ++.-+.+...|-.|+++.-..  |          ..+.. +++|..  .|.++-| -|...++++|+.-|.|.||+-.  
T Consensus       347 ~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~--  424 (559)
T KOG1334|consen  347 DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK--  424 (559)
T ss_pred             CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc--
Confidence            887777777777899995432  2          12222 667753  4666655 7888999999999999999987  


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                             ..+.++.+.+...  -++|+.-+|--..||+++- |.-|+||...+.+
T Consensus       425 -------t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGi-d~DVKIWTP~~~e  469 (559)
T KOG1334|consen  425 -------TGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGI-DHDVKIWTPLTAE  469 (559)
T ss_pred             -------hhHHHHHhhcccc--eEeccCCCCCCchhhccCC-ccceeeecCCccc
Confidence                   3344454544333  5567777888888999887 8899999865433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.4e-14  Score=145.11  Aligned_cols=235  Identities=13%  Similarity=0.107  Sum_probs=161.4

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC---CCcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.+||.. |...+.+..|...+                 .+.+|+|||+.|+..+.   +..|.+|++.+++... +.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v-----------------~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~  242 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLV-----------------LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG  242 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCe-----------------EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee
Confidence            478888885 44445666676666                 49999999999888764   4689999998875432 22


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEE-EeCCCe--EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGR--IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-  256 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-  256 (622)
                      ...           ..+...+|+|||+.|+. .+.++.  |++||+.++.. ..+..+........|+|||++|+..+. 
T Consensus       243 ~~~-----------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        243 NFP-----------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             cCC-----------CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence            111           12457799999998764 444444  77778877765 456666667788999999999988774 


Q ss_pred             CC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         257 DN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       257 d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      +|  .|+++|+.+++..+.......+....|+|+++.++++....+  .+.++++.+.... .+.. ...+....|+|||
T Consensus       311 ~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG  388 (435)
T PRK05137        311 SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNG  388 (435)
T ss_pred             CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCC
Confidence            23  688889887766555545556777899999998877764443  5777887554332 2222 2245678999999


Q ss_pred             CEEEEEecC------CeEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         333 QHVVTGNSK------GKVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       333 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      +.|+..+.+      ..++++++..+.. ..+. ....+...+|+|-
T Consensus       389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCCC
Confidence            998775542      3588888866554 3444 2345667777763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.9e-14  Score=145.06  Aligned_cols=236  Identities=14%  Similarity=0.132  Sum_probs=157.1

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.++|.. |...+.+..+...+                 .+.+|+|||+.|+..+.+   ..|.+||+.+++......
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v-----------------~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~  237 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPI-----------------ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN  237 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCc-----------------ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec
Confidence            467777764 44445555666655                 489999999999887643   359999998875433211


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEE-EeCCCeEEEEEc--CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGRIVLWDF--LTRGIAKIISAHMHPVCSISWSRNGYKIISAST-  256 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-  256 (622)
                      ..            ..+...+|+|||+.|+. .+.++...+|.+  .++. .+.+..+........|+|||++|+..+. 
T Consensus       238 ~~------------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~  304 (427)
T PRK02889        238 FK------------GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDR  304 (427)
T ss_pred             CC------------CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecC
Confidence            11            12457899999998874 566777666654  3443 5566666666778899999999887664 


Q ss_pred             CCcEEEE--ECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         257 DNNVCIW--DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       257 d~~i~iw--d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      ++...||  ++.+++..+............|+|+|+.+++++...+  .+.+||+.++........  .......|+|+|
T Consensus       305 ~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg  382 (427)
T PRK02889        305 GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNG  382 (427)
T ss_pred             CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCC
Confidence            3555555  4455554433333333456899999998776665443  688999877654332222  233567899999


Q ss_pred             CEEEEEecCC---eEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         333 QHVVTGNSKG---KVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       333 ~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      +.|+..+.++   .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus       383 ~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        383 RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            9988876543   4666666 46666666667677888888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=1.4e-14  Score=146.46  Aligned_cols=235  Identities=15%  Similarity=0.180  Sum_probs=161.1

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.+||... ...+.+..+...+                 .+.+|+|||+.|+..+.+   ..|.+|++.+++......
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v-----------------~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~  245 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPI-----------------LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS  245 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCcc-----------------ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc
Confidence            4688999864 4444555555555                 489999999999987643   469999998875432211


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEE-EeCCC--eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDG--RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-  256 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-  256 (622)
                       ..           ....+++|+|||+.|+. .+.+|  .|++||+.+++. ..+..+......++|+|||++|+.++. 
T Consensus       246 -~~-----------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        246 -FR-----------GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             -CC-----------CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECC
Confidence             11           11346799999997764 34444  599999988764 456666556678999999999988764 


Q ss_pred             CC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         257 DN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       257 d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      +|  .|+++++.+++..+..........++|+|+++.++++...++  .+.+||+.++.... +.. ........|+|+|
T Consensus       313 ~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt~-~~~~~~p~~spdG  390 (433)
T PRK04922        313 GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LTP-GSLDESPSFAPNG  390 (433)
T ss_pred             CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CCC-CCCCCCceECCCC
Confidence            34  477778877775544433344557899999998777655443  58899987765442 222 2234467899999


Q ss_pred             CEEEEEecC---CeEEEEeCCCccEEEEEecCCCCEEEEEEcC
Q psy2110         333 QHVVTGNSK---GKVLVLSCPALELKASFKASTTAIKSIEFAR  372 (622)
Q Consensus       333 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  372 (622)
                      ++++..+.+   +.|.++++. +.....+..+.+.+..++|+|
T Consensus       391 ~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        391 SMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            988776653   468888875 445566665666777788876

>KOG2111|consensus

Probab=99.68  E-value=2.8e-13  Score=119.78  Aligned_cols=233  Identities=15%  Similarity=0.232  Sum_probs=166.0

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeC------CCe
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCN------DGR  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~------dg~  217 (622)
                      .+++|+.|..-+++|..+| .+||+++--+...........     +    .+..+-|  ..++|+ +|+.      -..
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-----~----~~veMLf--R~N~laLVGGg~~pky~pNk   76 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-----F----KIVEMLF--RSNYLALVGGGSRPKYPPNK   76 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-----h----hhhhHhh--hhceEEEecCCCCCCCCCce
Confidence            3789999999999887765 899998763221111111110     0    1111111  123443 3332      256


Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeC---CCCeEEEEEeCCCCeEE
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYRF---PSPILKVQFHPRNDHMF  293 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~~  293 (622)
                      +.|||=...+++..+. ...+|.++.+.++  +|++.- .+.|+||... ..+.++.+..   +....+++-+.+...++
T Consensus        77 viIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   77 VIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             EEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence            9999966666776665 4578999999765  466654 5789999987 5566666652   33433333333333333


Q ss_pred             EEeeCCCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCCe-EEEEeCCCccEEEEEec--CCCCEEEE
Q psy2110         294 LVCPMRHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKGK-VLVLSCPALELKASFKA--STTAIKSI  368 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~  368 (622)
                      +-|-.-|.+++.|+.....  ...+..|...|.+++.+.+|..+|+++..|+ |+|||..+|+++..++.  ....|.+|
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            3355678999999987655  4778899999999999999999999999996 79999999999999983  34679999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      +|||+..+|+++|..|+|.||.++.
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999999999999999999999984

>KOG1240|consensus

Probab=99.68  E-value=2.1e-14  Score=147.97  Aligned_cols=255  Identities=16%  Similarity=0.162  Sum_probs=167.5

Q ss_pred             ccccceeEEEEcC-CCCEEEEecCCCCeEEEEEcCCCc-----eEEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          79 VNKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGN-----LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        79 ~~~~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      .|...+..++.++ ++.++++|+.| |+|++|+...-.     ....+.-+               .+.+.+.++.+.+.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys---------------~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYS---------------PEGSRVEKVTMCGN 1109 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEe---------------ccCCceEEEEeccC
Confidence            3444555666655 55999999965 999999975311     11111111               02223368889999


Q ss_pred             CCEEEEeeCCCcEEEEecCCccccccc--cccc-CCCcccccccccceEEEEECCC-CC-EEEEEeCCCeEEEEEcCCCc
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKII--SAHM-HPEFDGALDCISLAVTCAFNKR-GT-LLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~v~~~~~s~~-g~-~l~~~~~dg~i~iwd~~~~~  227 (622)
                      ++.+|.++.||.|++.++......+..  .... .....+     ..+..-+|... +. .|+.+...+.|..||+....
T Consensus      1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g-----~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG-----VVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCC-----ceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence            999999999999999988763111111  0000 000111     12333344332 33 78888889999999998776


Q ss_pred             eEEEec--cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEeCCCC--eE-EEEee-CC
Q psy2110         228 IAKIIS--AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFHPRND--HM-FLVCP-MR  299 (622)
Q Consensus       228 ~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~--~~-~~~~~-~~  299 (622)
                      ...+++  ...+.|++++.+|.+.+++.|...|.+.+||++-+.++....++  .++..+..+|-.+  .. +.++. ..
T Consensus      1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            655554  34588999999999999999999999999999998888887744  6788888777544  33 44444 57


Q ss_pred             CcEEEEEecCCceeecccCC-------------------CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         300 HAAVLVDTDGDHQIVPIDED-------------------SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      +.+.+|++.++.....+-..                   .-......+..-+..+++|+.|..|+.||....+.
T Consensus      1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            78999999877544332221                   01111233334456889999999999999876543

>KOG2394|consensus

Probab=99.66  E-value=9.2e-15  Score=137.67  Aligned_cols=216  Identities=15%  Similarity=0.215  Sum_probs=147.8

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEecccccee------------------------cccCceEEeecCCceEEEeechh
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELK------------------------ASRGNCLLVNTGDRLIRVYNHQE   59 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~------------------------~~~~~~l~~~~~d~~i~~w~~~~   59 (622)
                      ++...++-.|.+|+.. ....+.+|+.....-.                        .+.+--++++-..|.+.+.+...
T Consensus       126 ~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            4455566677777763 3356888877632111                        22344577788888888877643


Q ss_pred             hhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC--------------CceEEE--Eecc
Q psy2110          60 VLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--------------GNLVKI--LHGT  123 (622)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--------------~~~~~~--~~~~  123 (622)
                      ....       ..-..........++|+.|-|.+.-+...+..+|.+++||..-              +.....  -+.+
T Consensus       205 ~~~s-------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk  277 (636)
T KOG2394|consen  205 FEVS-------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK  277 (636)
T ss_pred             hHHH-------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence            2111       1111122334577889999997765555554569999997531              111111  1111


Q ss_pred             C--cceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEE
Q psy2110         124 K--GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCA  201 (622)
Q Consensus       124 ~--~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  201 (622)
                      .  .++.   ..    .-+...|...+|+|||++||+.+.||.+||+|+.+.+++..++....           ...|++
T Consensus       278 ~~rNPv~---~w----~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----------GLLCvc  339 (636)
T KOG2394|consen  278 KTRNPVA---RW----HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----------GLLCVC  339 (636)
T ss_pred             ccCCccc---ee----EeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----------ceEEEE
Confidence            1  1111   00    01122567899999999999999999999999999877777666553           478999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc
Q psy2110         202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS  245 (622)
Q Consensus       202 ~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  245 (622)
                      |||||++|++|+.|--|.||.+..++.+..=++|+..|..++|.
T Consensus       340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            99999999999999999999999999999999999999999997

>KOG2321|consensus

Probab=99.66  E-value=3.6e-14  Score=134.79  Aligned_cols=290  Identities=11%  Similarity=0.065  Sum_probs=207.8

Q ss_pred             CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      ...+..++.+......+.+..||||+|+++.+...-.|++||+..-.+  .|..|...-.               |.-.-
T Consensus        39 ~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~---------------V~fei  101 (703)
T KOG2321|consen   39 RQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEV---------------VDFEI  101 (703)
T ss_pred             HHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccc---------------eeEEE
Confidence            345566677777777788999999999876554457999999975443  3344433221               12233


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      ++.|-..++.-..|.+|.+-.-..  ....+..+            ..-..++++.-..-|++++....|+-++++.|..
T Consensus       102 LsDD~SK~v~L~~DR~IefHak~G--~hy~~RIP------------~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf  167 (703)
T KOG2321|consen  102 LSDDYSKSVFLQNDRTIEFHAKYG--RHYRTRIP------------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF  167 (703)
T ss_pred             eccchhhheEeecCceeeehhhcC--eeeeeecC------------cCCccccccCCCccEEEeecCcceEEEEcccccc
Confidence            444545555556677776643221  11111111            1124455655444455666677899999999999


Q ss_pred             EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC------------CeEEEEEeCCCCeEEEEe
Q psy2110         229 AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS------------PILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~  296 (622)
                      +..+....+.++++..++-..+|++|+.+|.|.+||.++......+....            .|+++.|+.+|- -+.+|
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVG  246 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVG  246 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEee
Confidence            99998888999999999988899999999999999999887766665322            389999998864 57889


Q ss_pred             eCCCcEEEEEecCCceeeccc-CCCCceEEEEEeeC--CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         297 PMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRR--GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      ...|.+.+||++...++.... ...-.+..+.|.+.  +..+++ .....++|||-.+|+....+... ..++.+++-|+
T Consensus       247 ts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~  324 (703)
T KOG2321|consen  247 TSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPG  324 (703)
T ss_pred             ccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc-CCcCceeeecC
Confidence            999999999999887665443 34456777888665  334444 44567999999999999888765 44999999999


Q ss_pred             CCEEEEEeCCCcEEEEecc
Q psy2110         374 GNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       374 ~~~l~~~~~d~~i~i~d~~  392 (622)
                      +.+++++..+..+..|=+.
T Consensus       325 sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  325 SGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             CceEEEecCCCcceeEEcc
Confidence            9999999988888777666

>KOG1409|consensus

Probab=99.65  E-value=2.2e-14  Score=127.78  Aligned_cols=340  Identities=15%  Similarity=0.196  Sum_probs=228.6

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEe-cCCcccccccccccCCCcccccccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD-FLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~-~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      .++.++||.+.++                 ....-|...-+++.+.|.++|||- .+.++.-..+....+          
T Consensus        16 ll~~~eG~~d~vn-----------------~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP----------   68 (404)
T KOG1409|consen   16 LLSKIEGSQDDVN-----------------AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP----------   68 (404)
T ss_pred             hhhhhcCchhhhh-----------------hheeccCCCCeEEccccceeeeEEeccccccCchhhhhCC----------
Confidence            4456777777764                 555666677899999999999994 444544444433322          


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcC----CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL----TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      +.++++.+.++...|++|-..|++.-+.+.    .....+....|...+..+-|+....++++.+.|..+.---.+.+..
T Consensus        69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~  148 (404)
T KOG1409|consen   69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR  148 (404)
T ss_pred             CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence            467899999999999999999999988654    3445566778999999999999999999999998776555555555


Q ss_pred             EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe--cCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         271 EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT--DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      +..+.......++.+.-.   ..+.|...+.+....+  ..-..+..+.+|...+.+++|.+..+.+++|..|..+.+||
T Consensus       149 lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  149 LGGYNFETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             ccceEeeccCCCCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence            544443333333322221   4555666666665555  34567888999999999999999999999999999999999


Q ss_pred             CCCcc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC-CCCccee------------------
Q psy2110         349 CPALE-LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG-DPEPIQK------------------  408 (622)
Q Consensus       349 ~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~------------------  408 (622)
                      +.-.+ ....+.+|...|..+...+--+.|++++.||.|.+|+++......... .....+.                  
T Consensus       226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~  305 (404)
T KOG1409|consen  226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQL  305 (404)
T ss_pred             ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhh
Confidence            97554 455678999999999888888899999999999999998432221100 0000000                  


Q ss_pred             -eeccccc---eeeeeEEEcCCCCeEEEeeCCCCeEEEEE--------CCCCeeEEEEecCCCCceeEEEECCCCCEEEE
Q psy2110         409 -LQDLVNK---TMWKKCCFSGDGEYVCAGSARQHALYIWE--------KSVGNLVKILHGTKGELLLDVVWHPVRPIIAS  476 (622)
Q Consensus       409 -~~~~~~~---~~~~~~~~spdg~~l~~~~~~d~~i~iwd--------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  476 (622)
                       +..+...   ..+...+-|....+...|.  .-.+++-|        .. ..+++..+..+.. |+.+.+..+..+|++
T Consensus       306 glr~h~crkcg~avc~~c~s~~~~~p~mg~--e~~vR~~~~c~~~i~~~~-~t~LA~phei~tg-ItamhlqetlglLvT  381 (404)
T KOG1409|consen  306 GLRQHHCRKCGKAVCGKCSSNRSSYPTMGF--EFSVRVCDSCYPTIKDEE-RTPLAIPHEIKTG-ITAMHLQETLGLLVT  381 (404)
T ss_pred             hhhhhhhhhhhhhcCcccccCccccccccc--eeEEEEecccchhhhcCC-CCccccccccccc-eeEEEhhhhccceee
Confidence             0000000   0111111111112222222  22344433        22 2335555443334 999999988889999


Q ss_pred             Ee-CCcEEEeecCC
Q psy2110         477 IS-SGVVSLWAQNQ  489 (622)
Q Consensus       477 ~~-dg~v~iw~~~~  489 (622)
                      ++ |..|+|||+..
T Consensus       382 sG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  382 SGTDRVIKIWDVRS  395 (404)
T ss_pred             cCCceEEEEEechh
Confidence            99 99999999853

>KOG2315|consensus

Probab=99.64  E-value=4.2e-13  Score=127.66  Aligned_cols=313  Identities=16%  Similarity=0.201  Sum_probs=204.8

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM   83 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (622)
                      .+..+||++|+++|.+ .+..|+|++.....                  .+|-..                     .. .
T Consensus        37 ~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~------------------~~lt~~---------------------~~-~   75 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYS-DNQVVKVFEIATLK------------------VVLCVE---------------------LK-K   75 (566)
T ss_pred             ceeEEEcCCCcEEEEE-cCCeEEEEEccCCc------------------EEEEec---------------------cc-e
Confidence            4577889999888875 45778888753321                  111111                     01 2


Q ss_pred             eeEEEEcCCCCEEEEec----CCC-----CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          84 WKKCCFSGDGEYVCAGS----ARQ-----HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~----~~~-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      ++++.|||-|.+|.+--    ..+     -.+.+|++.++.....+......-                 ++..|++|..
T Consensus        76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-----------------W~~qfs~dEs  138 (566)
T KOG2315|consen   76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-----------------WVPQFSIDES  138 (566)
T ss_pred             eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-----------------cccccccchh
Confidence            35689999999987621    111     247799998865554444333222                 4789999887


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC--EEEE-----EeCCCeEEEEEcCCCc
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT--LLAV-----GCNDGRIVLWDFLTRG  227 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~-----~~~dg~i~iwd~~~~~  227 (622)
                      +.|-- ..+.+.+|++.+.+.... ..+           ...+..+.+||.+.  .+|+     .+.-+.++||......
T Consensus       139 l~arl-v~nev~f~~~~~f~~~~~-kl~-----------~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~  205 (566)
T KOG2315|consen  139 LAARL-VSNEVQFYDLGSFKTIQH-KLS-----------VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG  205 (566)
T ss_pred             hhhhh-hcceEEEEecCCccceee-eee-----------ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence            54432 236799999877322111 111           13478888888743  3333     3456779999876322


Q ss_pred             eEEEe---ccCCcCeeEEEEcCCCCEE-EEEe--CC---------CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         228 IAKII---SAHMHPVCSISWSRNGYKI-ISAS--TD---------NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       228 ~~~~~---~~~~~~v~~~~~s~~~~~l-~s~~--~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ....+   .-....=..+.|++-|.-| +.++  -|         .++++.++....+.-.+...++|.++.|+|++..+
T Consensus       206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF  285 (566)
T KOG2315|consen  206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREF  285 (566)
T ss_pred             ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEE
Confidence            11111   1112233467888766533 2222  22         36889988866677777788999999999999866


Q ss_pred             EEE-eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         293 FLV-CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---KGKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       293 ~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                      .++ |.+-..+.++|++.......   ..+.-.++-|+|.|++|+.++-   .|.+.|||+.+.+++..+.....  +-+
T Consensus       286 ~VvyGfMPAkvtifnlr~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~  360 (566)
T KOG2315|consen  286 AVVYGFMPAKVTIFNLRGKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVF  360 (566)
T ss_pred             EEEEecccceEEEEcCCCCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEE
Confidence            555 55677899999886533222   2344557889999999988654   58999999999999988886544  457


Q ss_pred             EEcCCCCEEEEEeC------CCcEEEEecc
Q psy2110         369 EFARRGNCLLVNTG------DRLIRVYNHQ  392 (622)
Q Consensus       369 ~~s~~~~~l~~~~~------d~~i~i~d~~  392 (622)
                      .|+|||++|++++.      |+.++||+..
T Consensus       361 eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  361 EWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            89999999999864      7889999987

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=5.7e-12  Score=123.31  Aligned_cols=273  Identities=15%  Similarity=0.230  Sum_probs=181.8

Q ss_pred             EEEEeCC----CeEEEEEc--CCCceE--EEeccCCcCeeEEEEcCCCCEEEEEeC----CCcEEEEECCCC--cE--EE
Q psy2110         209 LAVGCND----GRIVLWDF--LTRGIA--KIISAHMHPVCSISWSRNGYKIISAST----DNNVCIWDVLTG--EC--EQ  272 (622)
Q Consensus       209 l~~~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~~--~~  272 (622)
                      +++|+..    +.|.+|++  .+++..  ..+. .......++++|++++|++...    ++.|..|.+...  +.  +.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3455554    68999888  344432  2222 3345677899999999999877    468888888764  33  33


Q ss_pred             EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec----c----------cCCCCceEEEEEeeCCCEEEE
Q psy2110         273 KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP----I----------DEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       273 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~l~~  337 (622)
                      ... .......++++|+++.++++...++.+.++++.....+..    +          ........++.++|+|+++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            333 4566778999999999888888899999999986422211    1          123455678999999998887


Q ss_pred             Eec-CCeEEEEeCCCcc--E--EEEEe-cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeee
Q psy2110         338 GNS-KGKVLVLSCPALE--L--KASFK-ASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQ  410 (622)
Q Consensus       338 ~~~-dg~i~i~d~~~~~--~--~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  410 (622)
                      ... ...|.+|++....  +  ...+. .....-+.++|+|+++++.+... ++.|.+|++...     .+....++...
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-----~g~~~~~~~~~  235 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-----DGSLTEIQTIS  235 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-----TTEEEEEEEEE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-----CCceeEEEEee
Confidence            543 3479999987654  3  22333 34456789999999998877765 778999988720     11122222222


Q ss_pred             cc----ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC--CCee--EEEEecCCCCceeEEEECCCCCEEEEEe--CC
Q psy2110         411 DL----VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNL--VKILHGTKGELLLDVVWHPVRPIIASIS--SG  480 (622)
Q Consensus       411 ~~----~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~--~~~~--~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg  480 (622)
                      ..    ........++++|||++|+++....+.|.+|++.  +|++  +..+..... ..+.++++|+|++|+.+.  ++
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~-~Pr~~~~s~~g~~l~Va~~~s~  314 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK-FPRHFAFSPDGRYLYVANQDSN  314 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS-SEEEEEE-TTSSEEEEEETTTT
T ss_pred             eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCC
Confidence            22    1112345789999999999988778899999983  3443  333333222 389999999999999887  68


Q ss_pred             cEEEeecC
Q psy2110         481 VVSLWAQN  488 (622)
Q Consensus       481 ~v~iw~~~  488 (622)
                      .|.+|+++
T Consensus       315 ~v~vf~~d  322 (345)
T PF10282_consen  315 TVSVFDID  322 (345)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.6e-13  Score=137.08  Aligned_cols=236  Identities=16%  Similarity=0.217  Sum_probs=157.8

Q ss_pred             eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .|.++|..... .+.+..+...+.+..|+|||++|+..+.+   ..|++||+.+++...............|+|+++.++
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            56677765443 34556667789999999999999877543   258999999887655544455556789999999988


Q ss_pred             EEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-C--CeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         294 LVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-K--GKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       294 ~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                      ++...++.  ++++|+.++.. ..+..+.......+|+|+|+.|+..+. +  ..|+++|+.+++... +..........
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~  355 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGG  355 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCe
Confidence            88777775  67777776543 333444445667899999998877553 3  357778888776543 22222233457


Q ss_pred             EEcCCCCEEEEEeC-CCc--EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEEE
Q psy2110         369 EFARRGNCLLVNTG-DRL--IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYIW  443 (622)
Q Consensus       369 ~~s~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iw  443 (622)
                      +|+|||++|+..+. ++.  |.++|+..       +.   ...+.....   .....|+|||++|+.....++  .++++
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~-------g~---~~~lt~~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~  422 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLET-------GA---MQVLTSTRL---DESPSVAPNGTMVIYSTTYQGKQVLAAV  422 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCC-------CC---eEEccCCCC---CCCceECCCCCEEEEEEecCCceEEEEE
Confidence            89999999988765 343  55566552       11   111211100   113489999999988765444  47888


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      +. +|.....+..+.+. +...+|+|-
T Consensus       423 ~~-~G~~~~~l~~~~g~-~~~p~Wsp~  447 (448)
T PRK04792        423 SI-DGRFKARLPAGQGE-VKSPAWSPF  447 (448)
T ss_pred             EC-CCCceEECcCCCCC-cCCCccCCC
Confidence            87 56667777766555 788999983

>KOG1310|consensus

Probab=99.64  E-value=5.5e-15  Score=139.36  Aligned_cols=224  Identities=16%  Similarity=0.281  Sum_probs=164.2

Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCC-CCeEEEEeeCCCcEEE
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPR-NDHMFLVCPMRHAAVL  304 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~i~~  304 (622)
                      ....+.+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+.  |...|.++.|-|. ++.++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345788999999999999999999999999999999999888888877  7889999999984 5678899999999999


Q ss_pred             EEecC----------CceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEE----------EEEecCCC
Q psy2110         305 VDTDG----------DHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELK----------ASFKASTT  363 (622)
Q Consensus       305 ~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~  363 (622)
                      +|+..          ......+..|...+..++..|++ ..+.++++||+|+-+|++.....          ..+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99974          23445566778888889999988 77889999999999999863211          11112223


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccC-CCCC-----C---Ccceeee-ccc-------cc--eeeeeEEE
Q psy2110         364 AIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAG-KDGD-----P---EPIQKLQ-DLV-------NK--TMWKKCCF  423 (622)
Q Consensus       364 ~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~-~~~~-----~---~~~~~~~-~~~-------~~--~~~~~~~~  423 (622)
                      ...++.++|.. .+|++|+.|-..++||.+...... ..+.     +   .+++.+. ++.       ..  ..++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            46788999865 578899999999999965432221 1111     0   1122221 111       11  12456799


Q ss_pred             cCCCCeEEEeeCCCCeEEEEECCCCeeEE
Q psy2110         424 SGDGEYVCAGSARQHALYIWEKSVGNLVK  452 (622)
Q Consensus       424 spdg~~l~~~~~~d~~i~iwd~~~~~~~~  452 (622)
                      +|+|.-|+..-. .-.||++|+..++...
T Consensus       282 npNGtElLvs~~-gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  282 NPNGTELLVSWG-GEHVYLFDVNEDKSPT  309 (758)
T ss_pred             CCCCcEEEEeeC-CeEEEEEeecCCCCce
Confidence            999987766554 4479999998766443

>KOG0974|consensus

Probab=99.63  E-value=1.5e-12  Score=132.80  Aligned_cols=192  Identities=15%  Similarity=0.200  Sum_probs=144.6

Q ss_pred             cccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce
Q psy2110          37 ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL  116 (622)
Q Consensus        37 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~  116 (622)
                      +.....++..+.+..+-+|+........+...++.....       ...-+-++++.-++++|+.- +.|.+|++...+.
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~-------~~~~~g~s~~~~~i~~gsv~-~~iivW~~~~dn~  167 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY-------SSLIIGDSAEELYIASGSVF-GEIIVWKPHEDNK  167 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEE-------eEEEEeccCcEEEEEecccc-ccEEEEeccccCC
Confidence            445566777777777778777644333332222221111       01124678888899999986 8999999975444


Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccc-ccccccCCCccccccccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-IISAHMHPEFDGALDCIS  195 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~  195 (622)
                      -..+.||.+.++                 ++.|+-||+++++.|.|.++|+|++++.+... ..-+|.           .
T Consensus       168 p~~l~GHeG~iF-----------------~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs-----------a  219 (967)
T KOG0974|consen  168 PIRLKGHEGSIF-----------------SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS-----------A  219 (967)
T ss_pred             cceecccCCceE-----------------EEEEccCCcEEEEEecCcceeeeecccccccCccccccc-----------c
Confidence            457999999995                 99999999999999999999999999987665 222222           4


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      .+..+.|.|+  .+++++.|.+.++|+.+ +..+..+..|. ..+..++..++...+++++.|+.+++|++..
T Consensus       220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            6899999998  89999999999999754 44455777775 4689999999999999999999999999764

>KOG1354|consensus

Probab=99.63  E-value=7.1e-14  Score=124.56  Aligned_cols=253  Identities=17%  Similarity=0.283  Sum_probs=166.5

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccce-----e-----------------------------cccCceEEeec
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL-----K-----------------------------ASRGNCLLVNT   47 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~-----~-----------------------------~~~~~~l~~~~   47 (622)
                      |-|.++.|..+|.+||||+.+|.|.++.-....-     .                             ..+...++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            5689999999999999999999999996543210     0                             22356788889


Q ss_pred             CCceEEEeechhhhhcC------CCCCCccc-------------------hhhhhhccccceeEEEEcCCCCEEEEecCC
Q psy2110          48 GDRLIRVYNHQEVLNAG------KDGDPEPI-------------------QKLQDLVNKTMWKKCCFSGDGEYVCAGSAR  102 (622)
Q Consensus        48 ~d~~i~~w~~~~~~~~~------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~  102 (622)
                      .|++|++|.+.......      ..+.+..+                   +++....|.-.+.++.++.|++.++++.  
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD--  183 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD--  183 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc--
Confidence            99999999986543221      01111111                   1222334555677899999999998875  


Q ss_pred             CCeEEEEEcCCC-ceE--EEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCccc---
Q psy2110         103 QHALYIWEKSVG-NLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGI---  175 (622)
Q Consensus       103 ~~~i~vwd~~~~-~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~---  175 (622)
                      |-.|.+|+++-- +..  ..++.+.-            -+....|++..|+|.. ..++-.+..|+|++-|++...+   
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nm------------EeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~  251 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANM------------EELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA  251 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCH------------HHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence            579999998522 211  12222221            1223345788999965 4677777889999999985321   


Q ss_pred             -ccccccccCCCccc-ccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC-CCceEEEeccCC------------cC--
Q psy2110         176 -AKIISAHMHPEFDG-ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHM------------HP--  238 (622)
Q Consensus       176 -~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~--  238 (622)
                       .+.+.....+.... -...++.|..+.|+++|+++++-. --+|++||+. ..+++.+++-|.            ..  
T Consensus       252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If  330 (433)
T KOG1354|consen  252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF  330 (433)
T ss_pred             hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence             11222211111111 112235688999999999998764 3689999984 455666665443            12  


Q ss_pred             -eeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         239 -VCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       239 -v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                       -..++|+.++.++++|+..+.+++++...|.
T Consensus       331 dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  331 DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence             2457899999999999999999999976654

>KOG3881|consensus

Probab=99.62  E-value=1.1e-13  Score=125.56  Aligned_cols=247  Identities=16%  Similarity=0.241  Sum_probs=174.4

Q ss_pred             ceEEEEECCCCC--EEEEEeCCCeEEEEEcCCCceEEE------eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy2110         196 LAVTCAFNKRGT--LLAVGCNDGRIVLWDFLTRGIAKI------ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       196 ~v~~~~~s~~g~--~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      .+..++|..+++  .+...+.+..+..+.+....+...      .....++|..++.. || .|++|-.+|.+.+|....
T Consensus        57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEeccC
Confidence            466777776654  444444566677776665554433      23445667776654 44 677888899999999885


Q ss_pred             Cc----EEEEEeCCCCeEEEEEeCCCCeEEEEeeCC--CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC
Q psy2110         268 GE----CEQKYRFPSPILKVQFHPRNDHMFLVCPMR--HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       268 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  341 (622)
                      +.    .+..+....++..+.-++..++++++|+..  ..+.+||+.+..++.....-          |+. +|     +
T Consensus       135 ~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv----------pnD-~L-----~  198 (412)
T KOG3881|consen  135 GDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV----------PND-RL-----G  198 (412)
T ss_pred             CccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC----------CCc-cc-----c
Confidence            43    333444456666777777777777777777  66777777654333322111          100 00     1


Q ss_pred             CeEEEEeCCCccEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeee
Q psy2110         342 GKVLVLSCPALELKASFKASTTAIKSIEFARR--GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK  419 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (622)
                      =.|-+|                 ++++.|-+.  ...||+++.-+.+++||.+.        ..+|+..+.-.  ..++.
T Consensus       199 LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--------qRRPV~~fd~~--E~~is  251 (412)
T KOG3881|consen  199 LRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRH--------QRRPVAQFDFL--ENPIS  251 (412)
T ss_pred             ceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcc--------cCcceeEeccc--cCcce
Confidence            123444                 356667666  77899999999999999984        44666666543  45567


Q ss_pred             eEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         420 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       420 ~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      ++...|+|++|++|.. .+.+..||.+.++.+.. +.+-.++ |+++..+|.+++||+++ |..|||+|+.+
T Consensus       252 ~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGs-irsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  252 STGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGS-IRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             eeeecCCCcEEEEecc-cchhheecccCceeeccccCCccCC-cceEEEcCCCceEEeeccceeEEEeeccc
Confidence            8899999999999998 89999999999998877 7777777 99999999999999999 99999999976

>KOG3881|consensus

Probab=99.62  E-value=4.3e-14  Score=128.25  Aligned_cols=260  Identities=13%  Similarity=0.121  Sum_probs=184.9

Q ss_pred             CcceEEEEccCCc--EEEeccCCCeEEEEecccccee-------------------cccCceEEeecCCceEEEeechhh
Q psy2110           2 DLSIVASFDRRGQ--HVVTGNSKGKVLVLSCPALELK-------------------ASRGNCLLVNTGDRLIRVYNHQEV   60 (622)
Q Consensus         2 ~~V~~~~fspdg~--~latg~~dg~v~vwd~~~~~~~-------------------~~~~~~l~~~~~d~~i~~w~~~~~   60 (622)
                      +.|++++|--|++  .|...+.+..+..+......+.                   ...+..|++|..+|.+++|.....
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~  135 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSG  135 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccCC
Confidence            4567777776554  4444445555655554433222                   123567888899999999988632


Q ss_pred             hhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEE-ecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcc
Q psy2110          61 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA-GSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL  138 (622)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~-~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  138 (622)
                      ..     |   ...+..+..+.++..+.-++...++++ |+.. -..+.|||+...+.+..-+.-...-+        .+
T Consensus       136 d~-----h---ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L--------~L  199 (412)
T KOG3881|consen  136 DL-----H---SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL--------GL  199 (412)
T ss_pred             cc-----c---cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc--------cc
Confidence            21     1   122233334455566777777777766 5532 16799999998866555443322211        12


Q ss_pred             ccccceeEEEEcCC--CCEEEEeeCCCcEEEEecCCcc-cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC
Q psy2110         139 DCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND  215 (622)
Q Consensus       139 ~~~~~v~~~~~s~d--~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  215 (622)
                      .-.-|++.+.|-+.  ...||+++.-+.+++||...++ .+..+....           ..++++...|+|+++++|...
T Consensus       200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E-----------~~is~~~l~p~gn~Iy~gn~~  268 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE-----------NPISSTGLTPSGNFIYTGNTK  268 (412)
T ss_pred             eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc-----------CcceeeeecCCCcEEEEeccc
Confidence            22335678999888  8899999999999999998653 333333332           358999999999999999999


Q ss_pred             CeEEEEEcCCCceEEE-eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCC
Q psy2110         216 GRIVLWDFLTRGIAKI-ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR  288 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  288 (622)
                      +.+..||++.++.... +++..+.|+++..+|.+.++++++-|+.|||+|+.+.+.+...-..+.++++.+.++
T Consensus       269 g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  269 GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             chhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            9999999999988766 889999999999999999999999999999999999777766666677777776554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.62  E-value=3.4e-13  Score=137.17  Aligned_cols=235  Identities=16%  Similarity=0.259  Sum_probs=161.0

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      ..|.++|.... ..+.+..+...+.+.+|+|||++|+.+...   ..|++||+.+++......+...+.+++|+|+++.+
T Consensus       170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence            35777887533 345566676788999999999999987654   47999999998776655566677789999999988


Q ss_pred             EEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--eEEEEeCCCccEEEEEecCCCCEEE
Q psy2110         293 FLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--KVLVLSCPALELKASFKASTTAIKS  367 (622)
Q Consensus       293 ~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~  367 (622)
                      +++...++  .+++|++.++... .+..+........|+|+|+.|+..+.. +  .|+++++.+++.. .+..+...+..
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~  326 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNAS  326 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccC
Confidence            87766554  5888888765433 333334444567899999988776543 2  6888888876643 44445566778


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEE
Q psy2110         368 IEFARRGNCLLVNTGDR---LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYI  442 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~i  442 (622)
                      +.|+|+|++|+.++.++   .|.+||+..          ...+.+...   .......|+|||++|+..+.+++  .+++
T Consensus       327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~----------~~~~~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~  393 (417)
T TIGR02800       327 PSWSPDGDLIAFVHREGGGFNIAVMDLDG----------GGERVLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGL  393 (417)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEeCCC----------CCeEEccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence            89999999999988765   688888763          111222111   11123589999999988876443  4666


Q ss_pred             EECCCCeeEEEEecCCCCceeEEEEC
Q psy2110         443 WEKSVGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       443 wd~~~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      .+.. |+....+..+.+. +..++|+
T Consensus       394 ~~~~-g~~~~~~~~~~g~-~~~~~ws  417 (417)
T TIGR02800       394 VSTD-GRFRARLPLGNGD-VREPAWS  417 (417)
T ss_pred             EECC-CceeeECCCCCCC-cCCCCCC
Confidence            6644 5555656555444 6666664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.2e-13  Score=135.19  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=160.0

Q ss_pred             eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .|.++|...+. .+.+..+...+....|+|||++|+..+.+   ..|.+||+.+++........+.+....|+|+|+.++
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence            47777776444 45565677789999999999999887644   369999999988766555555666799999999888


Q ss_pred             EEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-C--CeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         294 LVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-K--GKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       294 ~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                      ++...++  .++++|+.++... .+..+........|+|+|+.|+..+. +  ..|+++++.+++.... ..........
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~  336 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARP  336 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccce
Confidence            7776555  5778888876543 34444445566789999998876554 3  3688888887774432 2222334467


Q ss_pred             EEcCCCCEEEEEeCC-C--cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC--CeEEEE
Q psy2110         369 EFARRGNCLLVNTGD-R--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ--HALYIW  443 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d--~~i~iw  443 (622)
                      .|+|+|++|+..+.+ +  .|.+||+...       .   .+.+.....   .....|+|||++|+..+..+  ..|+++
T Consensus       337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-------~---~~~lt~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        337 RLSADGKTLVMVHRQDGNFHVAAQDLQRG-------S---VRILTDTSL---DESPSVAPNGTMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEECCCC-------C---EEEccCCCC---CCCceECCCCCEEEEEEecCCceEEEEE
Confidence            899999999887653 3  4778887631       1   122221111   12348999999998877533  357778


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      ++. |.....+..+.+. +...+|+|-
T Consensus       404 ~~~-g~~~~~l~~~~g~-~~~p~ws~~  428 (430)
T PRK00178        404 SIN-GRVRLPLPTAQGE-VREPSWSPY  428 (430)
T ss_pred             ECC-CCceEECcCCCCC-cCCCccCCC
Confidence            875 4445556555554 788889874

>KOG1354|consensus

Probab=99.61  E-value=7.2e-13  Score=118.24  Aligned_cols=284  Identities=16%  Similarity=0.223  Sum_probs=180.9

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-c----eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC--E
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-N----LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT--L  155 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~--~  155 (622)
                      .+.++.|...|.+||+|... |.|.++.-... +    ....++.|....     ..-..+.-...|..+.|.++++  .
T Consensus        27 iis~vef~~~Ge~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEF-----DYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEF-----DYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             ceeeEEeecccceEeecCCC-CeEEEeecccccccceeeeeeeeccCccc-----chhhhhhhhhhhhhceecCCCCccE
Confidence            34588999999999999864 89988864322 2    233444555432     1111222233456888988765  5


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cc
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SA  234 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~  234 (622)
                      ++..+.|.+|++|.+.......  .+...+ ..+   ....+.++..      .+.+..+-.+.      ..+.+.+ .+
T Consensus       101 FLlstNdktiKlWKi~er~~k~--~~~~~~-~~~---~~~~~~~lr~------p~~~~~~~~ve------a~prRv~aNa  162 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKK--EGYNLP-EEG---PPGTITSLRL------PVEGRHDLEVE------ASPRRVYANA  162 (433)
T ss_pred             EEEecCCcceeeeeeecccccc--cccccc-ccC---CCCccceeec------eeeccccceee------eeeeeecccc
Confidence            6667789999999987643322  100000 000   0111222211      11111111110      0122222 36


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEe--------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-ECEQKYR--------FPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      |.--|++++++.|+..++++. |=.|.+|++.-. +......        ...-|++..|+|....+++.++..|.|++-
T Consensus       163 HtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            888899999999999998884 678999998733 2222222        123588999999999999999999999999


Q ss_pred             EecCCce------eeccc----------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeC-CCccEEEEEecCC------
Q psy2110         306 DTDGDHQ------IVPID----------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC-PALELKASFKAST------  362 (622)
Q Consensus       306 d~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~------  362 (622)
                      |++....      +....          .--..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.      
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence            9984311      11111          11234667899999999998543 47999999 4566777777553      


Q ss_pred             ------CCE---EEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         363 ------TAI---KSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       363 ------~~i---~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                            ..|   ..++|+-++.++++|+....+++|++.
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence                  222   357899999999999999999999966

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=5.5e-11  Score=108.01  Aligned_cols=291  Identities=13%  Similarity=0.138  Sum_probs=188.5

Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC---CCeEEEEEcCC--CceE--EEecc
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGRIVLWDFLT--RGIA--KIISA  234 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iwd~~~--~~~~--~~~~~  234 (622)
                      +.-|++|++.+..-.......        +.....++-++|+|+++.|+++..   .|.|..|.++.  |+..  .....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~--------v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL--------VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhh--------ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc
Confidence            467999998843211111110        011134678999999999988755   47788887764  4332  11112


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC-Cc---EEEEEeCCCC----------eEEEEEeCCCCeEEEEeeCC
Q psy2110         235 HMHPVCSISWSRNGYKIISAST-DNNVCIWDVLT-GE---CEQKYRFPSP----------ILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ...+-+.++++++|++++++.. .|.|.++-++. |.   .++.+.|.++          +....+.|+++.+++..-..
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            2234488999999999998876 47899999865 43   3344455554          78899999999888887778


Q ss_pred             CcEEEEEecCCceee---cccCCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCc-cEEEEEe---------cCCCCE
Q psy2110         300 HAAVLVDTDGDHQIV---PIDEDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPAL-ELKASFK---------ASTTAI  365 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~---------~~~~~i  365 (622)
                      ..+.+|++..+....   ...........+.|+|++++.++.++ +++|.+|..... ..+..++         ......
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            889999998542211   11134455667999999999877654 789999988763 2333333         123456


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeeccccce-eeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         366 KSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT-MWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      ..|.+++||++|.++.. ...|.+|.+..        ....+.......... .-....|++.|++|+++..+...|.+|
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~--------~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDP--------DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcC--------CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            78999999998888754 34788888873        112222222222222 235679999999999999877788888


Q ss_pred             ECC--CCeeEEEEecCCCCceeEEEEC
Q psy2110         444 EKS--VGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       444 d~~--~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      .++  +|++-............||.|.
T Consensus       319 ~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         319 ERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEcCCCceEEecccccCCCCcEEEEEc
Confidence            654  5665443332222225667664

>KOG2041|consensus

Probab=99.59  E-value=1.3e-12  Score=127.46  Aligned_cols=281  Identities=17%  Similarity=0.329  Sum_probs=207.1

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---------------eEEEEeccCcceeEEEEeecCccccccc
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---------------LVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                      .++....|+.|+....|+|+|+.+ |.++|..+.+..               .-+++.||.+.|                
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV----------------   74 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASV----------------   74 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceE----------------
Confidence            344556789999999999999986 999999876432               225567788777                


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                       ..+.|+.+.+.|-|...+|.|.+|.+..|.....+......         +.|.+++|+.+|..++....||.|.+=.+
T Consensus        75 -~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK---------SvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   75 -MVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK---------SVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             -EEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCc---------cEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence             58999999999999999999999999988776666555443         56899999999999999999999988777


Q ss_pred             CCCceE-EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-------cEEEE----Ee-CCCCeEEEEEe----
Q psy2110         224 LTRGIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-------ECEQK----YR-FPSPILKVQFH----  286 (622)
Q Consensus       224 ~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~----~~-~~~~v~~~~~~----  286 (622)
                      +..+.- +.+++  .-...+.|++|.+.++.+-..|.+.++|....       .+.-.    +. ++..+..+.|.    
T Consensus       145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            544321 22332  12347889999999888888999999997542       11111    11 33446666664    


Q ss_pred             ----CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC---------CeEEEEeCCCcc
Q psy2110         287 ----PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK---------GKVLVLSCPALE  353 (622)
Q Consensus       287 ----~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~  353 (622)
                          |+.+ .++++..+|.+.+..-.+......+... -.+..+.|+++|..+++++.+         +.|.+|. .-|+
T Consensus       223 ~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~  299 (1189)
T KOG2041|consen  223 QPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGH  299 (1189)
T ss_pred             ccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchh
Confidence                3434 6788888888887766554333333222 567788999999999987754         3566665 4578


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+.+++.....|++++|-..|-.++.+- |+.|++=+++
T Consensus       300 i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIR  337 (1189)
T KOG2041|consen  300 IVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIR  337 (1189)
T ss_pred             heEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeec
Confidence            8899999999999999988887776654 7888888776

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.59  E-value=3.8e-11  Score=113.93  Aligned_cols=264  Identities=10%  Similarity=0.078  Sum_probs=169.3

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEeCCCCe-----
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST----------DNNVCIWDVLTGECEQKYRFPSPI-----  280 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~v-----  280 (622)
                      ++|.+.|..+++.+..+.....+- .+ ++|||+.|+.+..          +..|.+||..+.+.+..+..+...     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999988887544433 34 9999999887766          678999999999999998854443     


Q ss_pred             ---EEEEEeCCCCeEEEEeeC-CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccE-
Q psy2110         281 ---LKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALEL-  354 (622)
Q Consensus       281 ---~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-  354 (622)
                         ..++++|+|+.+++..-. +..+.++|+.+.+.+..+..... ......+.+...  +-+.||......+. +++. 
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence               378999999988877745 88999999999888776665321 111112222211  11234433332221 1221 


Q ss_pred             EEE---EecCCCCE-EEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc-----ccceeeeeEEEc
Q psy2110         355 KAS---FKASTTAI-KSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-----VNKTMWKKCCFS  424 (622)
Q Consensus       355 ~~~---~~~~~~~i-~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s  424 (622)
                      ...   +.....++ ..-.|.+ +|+++.+... |.|++.|+......    ....+..+...     .....+.-++++
T Consensus       182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~----~~~~~~~~~~~~~~~~wrP~g~q~ia~~  256 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK----FLPAIEAFTEAEKADGWRPGGWQQVAYH  256 (352)
T ss_pred             EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce----ecceeeeccccccccccCCCcceeEEEc
Confidence            111   11100000 0013455 7877766665 99999997531110    11111111111     111222338999


Q ss_pred             CCCCeEEEeeC---------CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe--CCcEEEeecCCcc
Q psy2110         425 GDGEYVCAGSA---------RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS--SGVVSLWAQNQVE  491 (622)
Q Consensus       425 pdg~~l~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~--dg~v~iw~~~~~~  491 (622)
                      |+|+.++....         ..+.|.++|..+++.+..+....  .+..++++||++ +|++..  ++.|.+.|.....
T Consensus       257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence            99999887431         12579999999999999887544  289999999999 877666  7889999986543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.59  E-value=2.5e-11  Score=115.20  Aligned_cols=261  Identities=11%  Similarity=0.104  Sum_probs=172.4

Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----------CCeEEEEEcCCCceEEEe
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----------DGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------dg~i~iwd~~~~~~~~~~  232 (622)
                      ++|.+.|..+++.+..+.....+            ..+ ++|||+.|+++..          +..|.+||..+.+.+..+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P------------~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i   93 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLP------------NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI   93 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCC------------cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE
Confidence            88999999998888777655433            233 9999998887765          688999999999999887


Q ss_pred             ccCCc-------CeeEEEEcCCCCEEEEEe-C-CCcEEEEECCCCcEEEEEeCCCCeEEEEE--------eCCCCeEEEE
Q psy2110         233 SAHMH-------PVCSISWSRNGYKIISAS-T-DNNVCIWDVLTGECEQKYRFPSPILKVQF--------HPRNDHMFLV  295 (622)
Q Consensus       233 ~~~~~-------~v~~~~~s~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~~~  295 (622)
                      .-...       ....++++|||++|+... . +..|.+.|+.+++.+..+..+....-+..        +.|+..+.++
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEE
Confidence            64222       234789999999999776 3 68999999999999999886553333333        2333332222


Q ss_pred             eeCCCcEEEEEecCCceeecccCCCCce-EEEEEee-CCCEEEEEecCCeEEEEeCCCc-----cEEEEEec-------C
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDEDSDLS-IVASFDR-RGQHVVTGNSKGKVLVLSCPAL-----ELKASFKA-------S  361 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-------~  361 (622)
                      ...+|....-.    .+  .+......+ ..-.|.+ +|+++++..+ |.|.+.|+...     +....+..       .
T Consensus       174 ~d~~g~~~~~~----~~--vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       174 YGTKGNPKIKP----TE--VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             ecCCCceEEee----ee--eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence            22333211000    00  011100000 0113455 8888888776 99999996433     33332221       2


Q ss_pred             CCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC-eE
Q psy2110         362 TTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE-YV  430 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l  430 (622)
                      .+.+..++++++++.+++...          .+.|.++|..         ..+.+..+..   ......++|+|||+ +|
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---------t~kvi~~i~v---G~~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---------TGKRLRKIEL---GHEIDSINVSQDAKPLL  314 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC---------CCeEEEEEeC---CCceeeEEECCCCCeEE
Confidence            234455999999998888531          2579999987         3344444432   23445789999999 77


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      ++....++.|.++|..+++.++.+.
T Consensus       315 yvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEeCCCCCcEEEEECcCCeEEeeec
Confidence            7777557889999999999998883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3e-12  Score=128.22  Aligned_cols=241  Identities=12%  Similarity=0.103  Sum_probs=154.9

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCE--EE-EEeCC--CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCC
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK--II-SASTD--NNVCIWDVLTGECEQKYRFPSPILKVQFHPRND  290 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~-s~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  290 (622)
                      ..|.+.|...+. .+.+......+.+.+|+|||+.  ++ +...+  ..|.+.++.+++..+....++......|+|||+
T Consensus       165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            357777765443 4456556667788999999975  32 33333  368888999888777766777777899999999


Q ss_pred             eEEEEeeCCC--cE--EEEEecCC---ceeecccCCCCceEEEEEeeCCCEEEEEe-cCCe--EEEEeCCC-ccEEEEEe
Q psy2110         291 HMFLVCPMRH--AA--VLVDTDGD---HQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGK--VLVLSCPA-LELKASFK  359 (622)
Q Consensus       291 ~~~~~~~~~~--~i--~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~  359 (622)
                      .++++....+  .+  ..|++..+   ................+|+|||+.|+..+ .+|.  |+++++.. +.....+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            8888775433  23  33565542   22222222223345679999999887655 4554  55555542 23344455


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC
Q psy2110         360 ASTTAIKSIEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR  436 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  436 (622)
                      .+...+....|+|||++|+..+.+   ..|++||+...       .   .+.+...  ........|+|||++|+.....
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-------~---~~~Lt~~--~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-------R---DYQLTTS--PENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-------C---eEEccCC--CCCccceEECCCCCEEEEEECC
Confidence            555567789999999999887653   46899998731       1   1222211  1122456999999998865432


Q ss_pred             --CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110         437 --QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       437 --d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                        ...|+++++.+++...... ..+. +...+|+|-.
T Consensus       392 ~g~~~L~~vdl~~g~~~~Lt~-~~g~-~~~p~Ws~~~  426 (428)
T PRK01029        392 SNESELYLISLITKKTRKIVI-GSGE-KRFPSWGAFP  426 (428)
T ss_pred             CCCceEEEEECCCCCEEEeec-CCCc-ccCceecCCC
Confidence              4579999998887554443 3333 7788999854

>KOG1912|consensus

Probab=99.57  E-value=2.1e-12  Score=127.14  Aligned_cols=423  Identities=14%  Similarity=0.123  Sum_probs=249.7

Q ss_pred             eEEEEccCCcEEEeccCCCeEEEEecccccee-------------------------c-c-cCceEEeecCCceEEEeec
Q psy2110           5 IVASFDRRGQHVVTGNSKGKVLVLSCPALELK-------------------------A-S-RGNCLLVNTGDRLIRVYNH   57 (622)
Q Consensus         5 ~~~~fspdg~~latg~~dg~v~vwd~~~~~~~-------------------------~-~-~~~~l~~~~~d~~i~~w~~   57 (622)
                      .++.|+|.| ++|.|+. ..|.|-|..+.+..                         + + ..-+|+++.-.|.|.+||.
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~   96 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF   96 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence            467788888 7787765 56777777654333                         1 1 2335677778899999998


Q ss_pred             hhhhhcCCCCCCccchhhhhhccccceeEEEEcC---CC-CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEe
Q psy2110          58 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG---DG-EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVE  133 (622)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~-~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  133 (622)
                      ..........+           +...+..++|-+   +. ..|++-.. ...|.+|+..+|+.+..........      
T Consensus        97 ~~~s~~~~l~~-----------~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdtG~k~Wk~~ys~~iL------  158 (1062)
T KOG1912|consen   97 VLASVINWLSH-----------SNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDTGEKFWKYDYSHEIL------  158 (1062)
T ss_pred             hhhhhhhhhcC-----------CCcchhheeeeeccCcchheeEEecC-CcEEEEEEccCCceeeccccCCcce------
Confidence            65433222111           111223455543   44 34444433 3799999999999988776555444      


Q ss_pred             ecCccccccceeEEEEcC-CCCEEEEeeCCCcEEEEecCC-------cccccccccccCCC------cccc--cc-----
Q psy2110         134 FDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLT-------RGIAKIISAHMHPE------FDGA--LD-----  192 (622)
Q Consensus       134 ~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~-------~~~~~~~~~~~~~~------~~~~--~~-----  192 (622)
                                 .|+.+.| |.+.+..-+..|.+.+-+...       |+..+.-..|....      ..+.  ..     
T Consensus       159 -----------s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  159 -----------SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             -----------eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence                       3677777 334444444445555554321       11111111111000      0000  00     


Q ss_pred             -cccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC--EEEEEeCCCcEEEEECCCC-
Q psy2110         193 -CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY--KIISASTDNNVCIWDVLTG-  268 (622)
Q Consensus       193 -~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~i~iwd~~~~-  268 (622)
                       .+.....++|+|.-+.++.......+.++|++-..++....-..+.+.-+.+-|+++  .|++...||.+.+|-.+.. 
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence             001122357888776666666778899999998888877776677777788888765  6889999999999975541 


Q ss_pred             ---------------cEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee-----------c-----
Q psy2110         269 ---------------ECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV-----------P-----  315 (622)
Q Consensus       269 ---------------~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----------~-----  315 (622)
                                     +....+.  ....+......|..+..++.--.++...+|.+.+++.-.           .     
T Consensus       308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~  387 (1062)
T KOG1912|consen  308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNL  387 (1062)
T ss_pred             ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccC
Confidence                           1111111  111122233344433334444455666666665321100           0     


Q ss_pred             ---------------ccCCCCceEEEEEe-----------eCC-------CEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         316 ---------------IDEDSDLSIVASFD-----------RRG-------QHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       316 ---------------~~~~~~~~~~~~~~-----------~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                                     ...|....++....           |.|       ..++.|+..|+|.++|+.++.....+..|.
T Consensus       388 ~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht  467 (1062)
T KOG1912|consen  388 STKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT  467 (1062)
T ss_pred             ceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc
Confidence                           01122222222221           222       267889999999999999999999999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeC---------CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEe
Q psy2110         363 TAIKSIEFARRGNCLLVNTG---------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG  433 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  433 (622)
                      ..|.++.|....+++-.+..         -+.+.+-|++++.       .+.++.+++ ....+|..+..|..|+||+..
T Consensus       468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGl-------sk~fR~l~~-~despI~~irvS~~~~yLai~  539 (1062)
T KOG1912|consen  468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGL-------SKRFRGLQK-PDESPIRAIRVSSSGRYLAIL  539 (1062)
T ss_pred             cceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccc-------ccccccCCC-CCcCcceeeeecccCceEEEE
Confidence            99999999877665443322         1346677777422       223332222 234667788999999999999


Q ss_pred             eCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC
Q psy2110         434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      .. +.-+.+||+++..+++...-...- ++.+.|+
T Consensus       540 Fr-~~plEiwd~kt~~~lr~mS~a~P~-it~leWs  572 (1062)
T KOG1912|consen  540 FR-REPLEIWDLKTLRMLRLMSLALPL-ITVLEWS  572 (1062)
T ss_pred             ec-ccchHHHhhccchHHHHHhhcCCc-EEEEeec
Confidence            97 778999999876655443322222 7888887

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.57  E-value=1.4e-10  Score=108.36  Aligned_cols=225  Identities=14%  Similarity=0.116  Sum_probs=159.0

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEecCCcccccccccccC----CCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEE
Q psy2110         148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH----PEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       148 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd  222 (622)
                      ..+.||+.++.. ..|.|.+||..+.... .+....+    ..............  .|++ +|.+++..+ .|...+.+
T Consensus       273 ~~nsDGkrIvFq-~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyle--dfa~~~Gd~ia~VS-RGkaFi~~  347 (668)
T COG4946         273 NANSDGKRIVFQ-NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLE--DFAVVNGDYIALVS-RGKAFIMR  347 (668)
T ss_pred             ccCCCCcEEEEe-cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhh--hhccCCCcEEEEEe-cCcEEEEC
Confidence            345688887764 3488999998775432 2222111    10000000000011  1332 577888776 56777776


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN-NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      ...+-.++  -+|.+.|.-..+..++.-++.|..|| .+-|+|..+++..+....-+.|.++..+++|+. ++++.....
T Consensus       348 ~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~e  424 (668)
T COG4946         348 PWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKK-VVVANDRFE  424 (668)
T ss_pred             CCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcE-EEEEcCceE
Confidence            54443332  25667788888888888999999999 899999999988777777889999999999984 667777888


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      +.++|+.++.....-....+.|+...|+|+++++|-+--+|    .|+++|+.+++...... ....=.+-+|.|++++|
T Consensus       425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEE
Confidence            99999999888777777788999999999999999865544    69999999887655433 22333567899999988


Q ss_pred             EEEe
Q psy2110         378 LVNT  381 (622)
Q Consensus       378 ~~~~  381 (622)
                      ..-+
T Consensus       504 YfLs  507 (668)
T COG4946         504 YFLS  507 (668)
T ss_pred             EEEe
Confidence            7654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=5.6e-13  Score=117.71  Aligned_cols=148  Identities=14%  Similarity=0.240  Sum_probs=105.3

Q ss_pred             EEEEEeeCCCEEEEEec----------CCeEEEEeCCC-ccEEEEEec-CCCCEEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy2110         324 IVASFDRRGQHVVTGNS----------KGKVLVLSCPA-LELKASFKA-STTAIKSIEFARRGNCLLVNT--GDRLIRVY  389 (622)
Q Consensus       324 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~--~d~~i~i~  389 (622)
                      ..+.|+++|.+|++-..          -|...+|.++. ......+.. ..++|.+++|+|+|+.|++..  .+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35778888888766433          12344554422 234444443 345799999999999887653  56799999


Q ss_pred             ecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110         390 NHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                      |++.          ..+..+.    ......+.|||+|++|++++..  .|.|.+||..+.+.+......  . ++.++|
T Consensus        89 d~~~----------~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~-~t~~~W  151 (194)
T PF08662_consen   89 DVKG----------KKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--D-ATDVEW  151 (194)
T ss_pred             cCcc----------cEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--c-EEEEEE
Confidence            9862          3333332    2344578999999999998752  467999999988887766533  2 889999


Q ss_pred             CCCCCEEEEEe-------CCcEEEeecC
Q psy2110         468 HPVRPIIASIS-------SGVVSLWAQN  488 (622)
Q Consensus       468 sp~~~~l~s~~-------dg~v~iw~~~  488 (622)
                      +|+|++|+++.       |..++||+..
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEec
Confidence            99999999874       5778999986

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=2.6e-12  Score=130.69  Aligned_cols=235  Identities=14%  Similarity=0.174  Sum_probs=155.3

Q ss_pred             eEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCccccccccc
Q psy2110         105 ALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIISA  181 (622)
Q Consensus       105 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~  181 (622)
                      .|.++|.+.+.. +.+..+...+                 ....|+|||+.|+..+.+   ..|.+|++.+++.......
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~-----------------~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~  241 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPI-----------------LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF  241 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCce-----------------eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence            577788775443 4455555555                 488999999999876643   3688999988754332211


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEE-eCCC--eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDG--RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D  257 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d  257 (622)
                      .            ..+...+|+|||+.|+.. ..++  .|++||+.++... .+..+........|+|||+.|+..+. +
T Consensus       242 ~------------g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~  308 (430)
T PRK00178        242 E------------GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRG  308 (430)
T ss_pred             C------------CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCC
Confidence            1            123457999999988754 3344  6888898877643 45556666778899999998887764 2


Q ss_pred             --CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCC
Q psy2110         258 --NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       258 --~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                        ..|+++++.+++..+............|+|+++.++++...++  .+.++|+.++........  .......|+|+|+
T Consensus       309 g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~  386 (430)
T PRK00178        309 GKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGT  386 (430)
T ss_pred             CCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCC
Confidence              3588888888876544333333446789999998877765544  477888876643322221  1223468999999


Q ss_pred             EEEEEecC---CeEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         334 HVVTGNSK---GKVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       334 ~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      .++..+.+   ..+.++++. +.....+..+.+.+...+|+|-
T Consensus       387 ~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        387 MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            98876643   357777775 4444455555566777778763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=3.2e-12  Score=129.21  Aligned_cols=235  Identities=20%  Similarity=0.211  Sum_probs=152.6

Q ss_pred             eEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-C--cEEEEecCCccccccccc
Q psy2110         105 ALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-G--RIVLWDFLTRGIAKIISA  181 (622)
Q Consensus       105 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~vw~~~~~~~~~~~~~  181 (622)
                      .|.++|...... +.+..+...+                 .+..|+|||+.|+..+.+ +  .|.+||+.+++.......
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~-----------------~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~  260 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPL-----------------MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF  260 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcc-----------------cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC
Confidence            677777654433 3444444444                 488999999988876543 2  588889887754322111


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEE-eCCCe--EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGR--IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D  257 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d  257 (622)
                      .            ......+|+|||+.|+.. +.++.  |+++|+.+++. ..+..+.......+|+|||++|+..+. +
T Consensus       261 ~------------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        261 P------------GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             C------------CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCC
Confidence            1            112357999999988754 45554  77788877654 445556566778999999998887664 3


Q ss_pred             C--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCC
Q psy2110         258 N--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       258 ~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                      +  .|+++|+.+++..+............|+|+++.++++...++.  +.++|+.++.... +... .......|+|+|+
T Consensus       328 g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~  405 (448)
T PRK04792        328 GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGT  405 (448)
T ss_pred             CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCC
Confidence            3  5777788888765543333334457899999988887665554  5556766654332 2211 1222457999999


Q ss_pred             EEEEEecC-C--eEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         334 HVVTGNSK-G--KVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       334 ~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      .|+..+.+ |  .+++++. ++.....+..+.+.+...+|+|-
T Consensus       406 ~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        406 MVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            88775543 3  4777776 56666667666677788888873

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.54  E-value=2e-09  Score=116.71  Aligned_cols=434  Identities=16%  Similarity=0.200  Sum_probs=237.5

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEeccccce----e----cccCceEEeecCCceEEEeechhhhhcCC-CCCCccch
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL----K----ASRGNCLLVNTGDRLIRVYNHQEVLNAGK-DGDPEPIQ   73 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~----~----~~~~~~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~~~   73 (622)
                      -|.|++||||+.+||..+.+|+|.+-...-..+    .    +.....+-+|-+.+.-++-.-........ .....+..
T Consensus       122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~  201 (928)
T PF04762_consen  122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV  201 (928)
T ss_pred             cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence            488999999999999988889888754221100    0    11112222332222222211111110000 00000000


Q ss_pred             hhhhhccccceeEEEEcCCCCEEEEecC---CC--CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          74 KLQDLVNKTMWKKCCFSGDGEYVCAGSA---RQ--HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~~~~l~~~~~---~~--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      ....+.....-..++|-.||+|+|+.+.   .+  ..|+||+-+ |.+..+-..-.+--                 .+++
T Consensus       202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe-----------------~~l~  263 (928)
T PF04762_consen  202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLE-----------------GALS  263 (928)
T ss_pred             ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCcc-----------------CCcc
Confidence            0011112334457999999999998765   22  579999865 55444333222211                 4889


Q ss_pred             EcCCCCEEEEeeC---CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110         149 FNKRGTLLAVGCN---DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  225 (622)
Q Consensus       149 ~s~d~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~  225 (622)
                      |.|.|++||+...   ...|.+|.-+ |-....|.....+.       ...|..++|++|+..||....+. |.+|-..+
T Consensus       264 WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~-------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N  334 (928)
T PF04762_consen  264 WRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPE-------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSN  334 (928)
T ss_pred             CCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCC-------CceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence            9999999998865   3456666533 22222232222110       13578999999999999987555 99999876


Q ss_pred             Cce--EEEecc-CCcCeeEEEEcC-CCCEEEEEeCCCcEEEEEC----CC----------------CcE-----------
Q psy2110         226 RGI--AKIISA-HMHPVCSISWSR-NGYKIISASTDNNVCIWDV----LT----------------GEC-----------  270 (622)
Q Consensus       226 ~~~--~~~~~~-~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~----~~----------------~~~-----------  270 (622)
                      ...  .+.+.. ....+..+.|+| +...|.....+|.+..+++    ..                |..           
T Consensus       335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~V  414 (928)
T PF04762_consen  335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVV  414 (928)
T ss_pred             CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCC
Confidence            542  223332 223455599998 4456666666566655442    11                111           


Q ss_pred             -----EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee--------ecc----------cCCCCceEEEE
Q psy2110         271 -----EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI--------VPI----------DEDSDLSIVAS  327 (622)
Q Consensus       271 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------~~~----------~~~~~~~~~~~  327 (622)
                           ...+..+.+|..++|++++.. +++-..++.+.+|........        ..+          .........++
T Consensus       415 PPPMs~~~l~~~~~v~~vaf~~~~~~-~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (928)
T PF04762_consen  415 PPPMSSYELELPSPVNDVAFSPSNSR-FAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA  493 (928)
T ss_pred             CchHhceEEcCCCCcEEEEEeCCCCe-EEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence                 123345678999999998875 667778888888885432111        111          11234456777


Q ss_pred             EeeCCCEEEEEecC---CeEEEEeCCCcc---EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC
Q psy2110         328 FDRRGQHVVTGNSK---GKVLVLSCPALE---LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       328 ~~~~~~~l~~~~~d---g~i~i~d~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  401 (622)
                      |..+...++....+   ..+.+++....+   .........+.+..+...++...++.-..+|.+..++...        
T Consensus       494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~--------  565 (928)
T PF04762_consen  494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG--------  565 (928)
T ss_pred             EeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC--------
Confidence            77777666665543   577888774332   3333444456666666666655577778899988666552        


Q ss_pred             CCCcceeeeccccceeeeeEEEcCCCC--eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-
Q psy2110         402 DPEPIQKLQDLVNKTMWKKCCFSGDGE--YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-  478 (622)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-  478 (622)
                      ....+..+..   ......++......  .++.|-...|.+++    .+..+.      .. +++++.+  +.+|+... 
T Consensus       566 ~~~~~~~fp~---~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~-~tSF~v~--~~~Ll~TT~  629 (928)
T PF04762_consen  566 ELSQIVKFPQ---PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SN-CTSFAVT--DSFLLFTTT  629 (928)
T ss_pred             CccccccCCC---CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cC-CceEEEE--cCEEEEEec
Confidence            1122222222   12222333333332  34444433666654    222222      12 6667664  34444444 


Q ss_pred             CCcEEEeecC
Q psy2110         479 SGVVSLWAQN  488 (622)
Q Consensus       479 dg~v~iw~~~  488 (622)
                      ...+++.++.
T Consensus       630 ~h~l~fv~L~  639 (928)
T PF04762_consen  630 QHTLKFVHLN  639 (928)
T ss_pred             CceEEEEECc
Confidence            7777877775

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=6.2e-11  Score=107.68  Aligned_cols=269  Identities=13%  Similarity=0.194  Sum_probs=183.4

Q ss_pred             CCeEEEEEcCCCc-eE--EEeccCCcCeeEEEEcCCCCEEEEEeCC---CcEEEEECCC--CcEEEEEe---CCCCeEEE
Q psy2110         215 DGRIVLWDFLTRG-IA--KIISAHMHPVCSISWSRNGYKIISASTD---NNVCIWDVLT--GECEQKYR---FPSPILKV  283 (622)
Q Consensus       215 dg~i~iwd~~~~~-~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iwd~~~--~~~~~~~~---~~~~v~~~  283 (622)
                      +..|++|++.+.. .+  ..+-.+.+..+-|+|+|++++|+++..+   |.|..|.+..  |+....-+   ...+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            5679999998432 11  2233566788999999999999988765   6677776654  55433222   33445889


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceee---cccCCCC----------ceEEEEEeeCCCEEEEEec-CCeEEEEeC
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV---PIDEDSD----------LSIVASFDRRGQHVVTGNS-KGKVLVLSC  349 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~----------~~~~~~~~~~~~~l~~~~~-dg~i~i~d~  349 (622)
                      +++++++.++.+....+.|.++-++....+.   ....|..          .+....+.|++++|++..- .-+|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            9999999888888888999999987642221   1122222          2678899999999988642 236999999


Q ss_pred             CCccEEEEEe---cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeecc---c-cceeeeeE
Q psy2110         350 PALELKASFK---ASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQDL---V-NKTMWKKC  421 (622)
Q Consensus       350 ~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  421 (622)
                      ..+++...-.   .....-+.|.|+|++++..+.+. +++|.+|..+..     .+..+.++.+...   . .......+
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-----~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-----VGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-----CceEEEeeeeccCccccCCCCceeEE
Confidence            9876543222   33455689999999998877766 899999998842     1222333333222   2 22334577


Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEECCC--CeeEEEEe--cCCCCceeEEEECCCCCEEEEEe--CCcEEEeecCC
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEKSV--GNLVKILH--GTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQNQ  489 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~~~--~~~~~~~~--~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~  489 (622)
                      ..+|||++|.++......|.+|.+..  |++ ..+.  .-.+...+++.|+|.+++|+.+.  +.+|.++.++.
T Consensus       250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEcCCCCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            99999999999887666888887653  432 2221  11222278999999999999888  57799998863

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.52  E-value=9.9e-10  Score=119.01  Aligned_cols=295  Identities=14%  Similarity=0.178  Sum_probs=180.1

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEE------------------------EeccCcceeEE-EEee--
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI------------------------LHGTKGELLLD-VVEF--  134 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~------------------------~~~~~~~v~~~-~~~~--  134 (622)
                      .++.|++||||+..|+..+.+ +++.+.. .+..++..                        |+|..+..... ....  
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~-~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~  198 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGE-GNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV  198 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCC-CEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence            456789999999999988865 6776654 22222222                        22211111000 0000  


Q ss_pred             ----cCccccccceeEEEEcCCCCEEEEeeC---C---CcEEEEecCCcccccccccccCCCcccccccccceEEEEECC
Q psy2110         135 ----DGALDCISLAVTCAFNKRGTLLAVGCN---D---GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK  204 (622)
Q Consensus       135 ----~~~~~~~~~v~~~~~s~d~~~l~s~~~---d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  204 (622)
                          .+.+..-..-..++|-.||.++|+.+.   .   ..||||+-+ |.....-. ...          +.-.+++|.|
T Consensus       199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~----------gLe~~l~WrP  266 (928)
T PF04762_consen  199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVD----------GLEGALSWRP  266 (928)
T ss_pred             CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCC----------CccCCccCCC
Confidence                011111112358899999999998774   2   579999865 43332222 111          1134689999


Q ss_pred             CCCEEEEEeC---CCeEEEEEcCCCceEEEe----ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEe
Q psy2110         205 RGTLLAVGCN---DGRIVLWDFLTRGIAKII----SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKYR  275 (622)
Q Consensus       205 ~g~~l~~~~~---dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~  275 (622)
                      .|+++|+...   ...|.+|.- +|-....|    ......|..+.|++|+..|+....|. |.+|-..+...  .+.+.
T Consensus       267 sG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~  344 (928)
T PF04762_consen  267 SGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR  344 (928)
T ss_pred             CCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE
Confidence            9999988764   345666763 33322222    24456899999999999999987655 99998877653  23333


Q ss_pred             C--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec----CC--------ceeeccc-----------------------C
Q psy2110         276 F--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD----GD--------HQIVPID-----------------------E  318 (622)
Q Consensus       276 ~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~--------~~~~~~~-----------------------~  318 (622)
                      .  ...+..+.|+|.....+.....++.+..++..    ..        ..+..+.                       .
T Consensus       345 ~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~  424 (928)
T PF04762_consen  345 FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE  424 (928)
T ss_pred             ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence            2  34456699999887777776665665544331    11        0011100                       1


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--------EEEE----------ecCCCCEEEEEEcCCCCEEEEE
Q psy2110         319 DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--------KASF----------KASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~----------~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      ....+..++|++++..+++-..||.|.+|.......        ...+          ......+..++|..+...++..
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLS  504 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEE
Confidence            245688999999998899999999999998543211        1111          1224567889998887766666


Q ss_pred             eCC---CcEEEEecc
Q psy2110         381 TGD---RLIRVYNHQ  392 (622)
Q Consensus       381 ~~d---~~i~i~d~~  392 (622)
                      ..+   ..+.++++.
T Consensus       505 ~~~~~~~~i~~~~~~  519 (928)
T PF04762_consen  505 DSDSNQSKIVLVDID  519 (928)
T ss_pred             ecCcccceEEEEEec
Confidence            554   567888775

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=7.1e-12  Score=127.45  Aligned_cols=233  Identities=18%  Similarity=0.218  Sum_probs=151.6

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCcccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~  180 (622)
                      ..|.++|...+. .+.+..+...+                 ...+|+|||++|+.++..   ..|++|++.+++......
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~-----------------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~  231 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPI-----------------LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS  231 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCce-----------------ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec
Confidence            468888876443 44455555545                 488999999999987654   479999998875433221


Q ss_pred             cccCCCcccccccccceEEEEECCCCCEEEEE-eCC--CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CND--GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD  257 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  257 (622)
                      ..            ..+.+++|+|||+.|+.. +.+  ..|++|++.++.. ..+..+........|+|||++|+..+..
T Consensus       232 ~~------------~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~  298 (417)
T TIGR02800       232 FP------------GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDR  298 (417)
T ss_pred             CC------------CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence            11            124567999999977654 333  3588889887654 3444555556678999999998877653


Q ss_pred             -C--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         258 -N--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       258 -~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                       +  .|+++|+.+++.............+.|+|+++.++++....+  .+.++|+.+...... ... .......|+|+|
T Consensus       299 ~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg  376 (417)
T TIGR02800       299 GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNG  376 (417)
T ss_pred             CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCC
Confidence             2  688889888776554445566778899999987766655433  677888876433222 211 223456899999


Q ss_pred             CEEEEEecCC---eEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         333 QHVVTGNSKG---KVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       333 ~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                      ++|+..+.++   .+.+.+. +++....+..+.+.+..++|
T Consensus       377 ~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       377 RMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence            9888876654   3555553 34444555444444444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.2e-11  Score=122.02  Aligned_cols=239  Identities=14%  Similarity=0.137  Sum_probs=147.3

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE---EEeeCCC--cEEEEecCCcccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL---AVGCNDG--RIVLWDFLTRGIAKI  178 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l---~s~~~dg--~i~vw~~~~~~~~~~  178 (622)
                      ..|.+.|...+... .+.......                 .+-+|+|||+.+   ++...+|  .|.+.++.+++....
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~-----------------~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l  226 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLS-----------------ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI  226 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCc-----------------ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe
Confidence            36777777655443 343333333                 377999999752   2444444  477778877654333


Q ss_pred             cccccCCCcccccccccceEEEEECCCCCEEEEEeC-CC--e--EEEEEcCCC---ceEEEeccCCcCeeEEEEcCCCCE
Q psy2110         179 ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DG--R--IVLWDFLTR---GIAKIISAHMHPVCSISWSRNGYK  250 (622)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg--~--i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~  250 (622)
                      ....            ......+|+|||+.|+..+. +|  .  +.+|++..+   ...+....+.......+|+|||+.
T Consensus       227 t~~~------------g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~  294 (428)
T PRK01029        227 LALQ------------GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR  294 (428)
T ss_pred             ecCC------------CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE
Confidence            2211            12346799999998887653 22  2  344676653   333333333344567899999998


Q ss_pred             EEEEeC-CCcEEEE--ECCC-CcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCce
Q psy2110         251 IISAST-DNNVCIW--DVLT-GECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLS  323 (622)
Q Consensus       251 l~s~~~-d~~i~iw--d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~  323 (622)
                      |+..+. +|...+|  ++.. +.....+. ....+....|+|+|+.++++...++  .+.+||+.++...... .....+
T Consensus       295 Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~  373 (428)
T PRK01029        295 LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENK  373 (428)
T ss_pred             EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCc
Confidence            887763 5644444  5432 22233333 4456678999999998887765543  6889998876554332 223345


Q ss_pred             EEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110         324 IVASFDRRGQHVVTGNS---KGKVLVLSCPALELKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       324 ~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  374 (622)
                      ....|+|||+.|+....   ...|+++++.+++..... ...+.+...+|+|-.
T Consensus       374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence            67899999998875433   356888998877654433 344556778888754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.50  E-value=5.2e-12  Score=111.53  Aligned_cols=155  Identities=15%  Similarity=0.227  Sum_probs=112.5

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEEcCC-CceEEEecc-CCcCeeEEEEcCCCCEEEEEe--CCCcEEEE
Q psy2110         198 VTCAFNKRGTLLAVGCN----------DGRIVLWDFLT-RGIAKIISA-HMHPVCSISWSRNGYKIISAS--TDNNVCIW  263 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~--~d~~i~iw  263 (622)
                      ..+.|+++|++|++-..          -+...+|.++. ......+.- ..++|.+++|+|+|+.|++..  .++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46789999998776433          23455666633 233344432 345799999999999876553  56799999


Q ss_pred             ECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-
Q psy2110         264 DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-  340 (622)
Q Consensus       264 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  340 (622)
                      |++ ++.+..+. ...+..+.|+|+|+.+++++.  ..|.+.+||.++...+......  .+..++|+|+|++++++.. 
T Consensus        89 d~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEec
Confidence            996 56666554 467789999999997776653  3568999999987777665533  4678999999999999764 


Q ss_pred             -----CCeEEEEeCCCccEEEE
Q psy2110         341 -----KGKVLVLSCPALELKAS  357 (622)
Q Consensus       341 -----dg~i~i~d~~~~~~~~~  357 (622)
                           |+.++||+.. |+.+..
T Consensus       165 ~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cceeccccEEEEEec-CeEeEe
Confidence                 5778999975 555544

>KOG2041|consensus

Probab=99.47  E-value=1.1e-11  Score=121.07  Aligned_cols=286  Identities=14%  Similarity=0.236  Sum_probs=209.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---------------eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---------------IAKIISAHMHPVCSISWSRNGYKIISASTDNNV  260 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  260 (622)
                      ...|++|+....++++|+.||.+++..+.+..               .-+++.+|.+.|.-+.|+.+.+.|-+...+|-|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            46799999999999999999999999876422               225678999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEE---eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110         261 CIWDVLTGECEQKY---RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       261 ~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (622)
                      .+|-+-.|.....+   +..+.|.+++|+.+|..+ .....||.+.+=.+...+. .-..........+.|++|.+.++.
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeecccee-cchhcchheccceeecccHHHHHh
Confidence            99998877644332   256779999999999864 4456677777766654322 111222233446789999999998


Q ss_pred             EecCCeEEEEeCCCc-------cEEE----EEecCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEEecccccccC
Q psy2110         338 GNSKGKVLVLSCPAL-------ELKA----SFKASTTAIKSIEFA--------RRGNCLLVNTGDRLIRVYNHQEVLNAG  398 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~-------~~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~d~~i~i~d~~~~~~~~  398 (622)
                      +-.+|.+.+||....       .+..    .+......|..+.|.        |+...|+++-.+|.+.+..-.+     
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN-----  248 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN-----  248 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC-----
Confidence            889999999997531       1111    111223346666663        5778899999999998876542     


Q ss_pred             CCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         399 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                         .+.++..-    ....+..+.|+++|..||.++.+        .+.|.+|.. -|+.+..++.+... |+.++|-..
T Consensus       249 ---D~~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~-It~lsWEg~  319 (1189)
T KOG2041|consen  249 ---DPEPVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSC-ITGLSWEGT  319 (1189)
T ss_pred             ---CCCCeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCce-eeeeEEcCC
Confidence               33333221    12345667999999999988762        235677764 47888899887776 999999998


Q ss_pred             CCEEEEEeCCcEEEeecCCcccccccC
Q psy2110         471 RPIIASISSGVVSLWAQNQVENWSAFA  497 (622)
Q Consensus       471 ~~~l~s~~dg~v~iw~~~~~~~~~~~s  497 (622)
                      |-.+|.+-|+.|++=++....+|..++
T Consensus       320 gLriA~AvdsfiyfanIRP~ykWgy~e  346 (1189)
T KOG2041|consen  320 GLRIAIAVDSFIYFANIRPEYKWGYIE  346 (1189)
T ss_pred             ceEEEEEecceEEEEeecccceEEEee
Confidence            889998889999999998888886443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.45  E-value=3.3e-10  Score=105.88  Aligned_cols=209  Identities=15%  Similarity=0.192  Sum_probs=144.6

Q ss_pred             hhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEec------cCccee-------------------
Q psy2110          74 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG------TKGELL-------------------  128 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~------~~~~v~-------------------  128 (622)
                      -++....-....+--.+.||+.++....  |.|+++|..+..+...--+      ......                   
T Consensus       259 DlrrHTnFtdYY~R~~nsDGkrIvFq~~--GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia  336 (668)
T COG4946         259 DLRRHTNFTDYYPRNANSDGKRIVFQNA--GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIA  336 (668)
T ss_pred             hhhhcCCchhccccccCCCCcEEEEecC--CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEE
Confidence            3344444444455567889999988763  7899999876543322111      000000                   


Q ss_pred             EE-------EEeecC---ccccccceeEEEEcCCCCEEEEeeCCC-cEEEEecCCcccccccccccCCCcccccccccce
Q psy2110         129 LD-------VVEFDG---ALDCISLAVTCAFNKRGTLLAVGCNDG-RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA  197 (622)
Q Consensus       129 ~~-------~~~~~~---~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (622)
                      +.       +....+   .+.....|+-..+..+++-++.|..|| .+-|+|..+++...... ..           +.|
T Consensus       337 ~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~l-----------g~I  404 (668)
T COG4946         337 LVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DL-----------GNI  404 (668)
T ss_pred             EEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-Cc-----------cce
Confidence            00       000000   011112345556666777888888888 79999988875443322 22           468


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEE
Q psy2110         198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN----NVCIWDVLTGECEQK  273 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~iwd~~~~~~~~~  273 (622)
                      .++..+++|+.++++.....+.+.|++++.....-+...+-|+.+.|+|++++||.+--+|    .|+++|+.+++....
T Consensus       405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            9999999999999999999999999999987766666778899999999999999886665    699999999888777


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEe
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      ....+.-.+.+|.|+++++.+.+
T Consensus       485 TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         485 TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cCCcccccCcccCCCCcEEEEEe
Confidence            66666667788999998776655

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.44  E-value=2.7e-10  Score=113.89  Aligned_cols=294  Identities=16%  Similarity=0.085  Sum_probs=186.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..+++++.+|.|..+|..+|+.+-........           ......  ++..+++++.++.++.+|..+|+.+...
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~-----------~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  131 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL-----------SGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRA  131 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc-----------ccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeee
Confidence            668888888999999999999876554433210           011122  4667888888999999999999988766


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE------EEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK------VQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                      ............  .+..++.++.++.|..||.++|+.+..+....+...      .... + . .++.+..++.+..+|
T Consensus       132 ~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald  206 (377)
T TIGR03300       132 KLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVALD  206 (377)
T ss_pred             ccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEEE
Confidence            543221111122  345677788899999999999998877764433211      1122 2 2 466777788999999


Q ss_pred             ecCCceeecccCCCC----c------e-EEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC
Q psy2110         307 TDGDHQIVPIDEDSD----L------S-IVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       307 ~~~~~~~~~~~~~~~----~------~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  375 (622)
                      ..+++.+........    .      + ....+  .+..+++++.+|.++.||..+++.+......  ....+.  ..+.
T Consensus       207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~  280 (377)
T TIGR03300       207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDN  280 (377)
T ss_pred             ccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCC
Confidence            988766543321100    0      0 01111  3567888888999999999999877665521  112222  2456


Q ss_pred             EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       376 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      .+++++.+|.|+.+|..+.         +.+........ ....+...  .+..|++++. +|.|+++|..+|+.+..+.
T Consensus       281 ~vyv~~~~G~l~~~d~~tG---------~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       281 RLYVTDADGVVVALDRRSG---------SELWKNDELKY-RQLTAPAV--VGGYLVVGDF-EGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             EEEEECCCCeEEEEECCCC---------cEEEccccccC-CccccCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEE
Confidence            7888888999999998732         22211111111 01111122  4668888886 8999999999999998887


Q ss_pred             cCCCCceeEEEECCCCCEEEEEe-CCcEEEe
Q psy2110         456 GTKGELLLDVVWHPVRPIIASIS-SGVVSLW  485 (622)
Q Consensus       456 ~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw  485 (622)
                      .+........++. +++ |+.++ ||.|+.+
T Consensus       348 ~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       348 TDGSGIASPPVVV-GDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             cCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence            6654312333343 333 55555 9988875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974|consensus

Probab=99.43  E-value=1.9e-11  Score=124.98  Aligned_cols=271  Identities=13%  Similarity=0.142  Sum_probs=179.3

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      .+|+.|.. -.|.+||+.++..+..+.........   .....+.     -.+.+++++..-+.+..-+.. .+....+.
T Consensus        18 ~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H---~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~-~~~~~~~s   87 (967)
T KOG0974|consen   18 DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH---RGEGKVK-----LLSGKIVTCAKSDEVYVKEAS-NQIIERFS   87 (967)
T ss_pred             ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc---cccccce-----eccceEEEEEeecceeecchh-hhhhhhcc
Confidence            56666543 46999999998776655433211000   0000000     112344444433333332221 11112222


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                         ..|....+..+.+.++.+..++.+.+||...+.....+.......           +.++                 
T Consensus        88 ---~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-----------l~~~-----------------  136 (967)
T KOG0974|consen   88 ---DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-----------LYSS-----------------  136 (967)
T ss_pred             ---ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-----------EEeE-----------------
Confidence               333344555577788888889999999988776666555433221           1110                 


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                                .-+..+++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-||+++++.|.|+++|+|+++.
T Consensus       137 ----------~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s  206 (967)
T KOG0974|consen  137 ----------LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS  206 (967)
T ss_pred             ----------EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc
Confidence                      0122344455788888889999999874443446889999999999999999999999999999999985


Q ss_pred             ccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCE
Q psy2110         394 VLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPI  473 (622)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  473 (622)
                      ....         . .....+...+..++|.|+  ++++++. |.+.++|+.. ++.+..+.+|.+..+..++.+++..+
T Consensus       207 ~~~~---------~-~~~fgHsaRvw~~~~~~n--~i~t~ge-dctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~  272 (967)
T KOG0974|consen  207 REVL---------G-CTGFGHSARVWACCFLPN--RIITVGE-DCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVII  272 (967)
T ss_pred             cccc---------C-cccccccceeEEEEeccc--eeEEecc-ceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceE
Confidence            2111         1 122233445567899998  8999997 9999999754 55667899999888999999999999


Q ss_pred             EEEEe-CCcEEEeecCC
Q psy2110         474 IASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       474 l~s~~-dg~v~iw~~~~  489 (622)
                      +++++ |+.+++|++.+
T Consensus       273 ~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  273 KVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEeeccCcchhhhhhhc
Confidence            99999 99999999864

>KOG4547|consensus

Probab=99.42  E-value=9.8e-11  Score=112.69  Aligned_cols=186  Identities=16%  Similarity=0.245  Sum_probs=153.8

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceEEEecc---CCcCeeEEEEc--------------------CCCCEEEEEeCCCcE
Q psy2110         204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHPVCSISWS--------------------RNGYKIISASTDNNV  260 (622)
Q Consensus       204 ~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s--------------------~~~~~l~s~~~d~~i  260 (622)
                      |...++|....||.+++|+...++....+..   -.+..++..|.                    .|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4467899999999999999998887666542   22334444442                    233467778888999


Q ss_pred             EEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110         261 CIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       261 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (622)
                      .+|++..++....+.   |.+.|.++.++.+-. .+.+++.+..+..|+......+..+......+.+++++|||+.+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999999988886   788999998887654 7889999999999999999999999999999999999999999998


Q ss_pred             EecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC-----CCEEEEE-eCCCcEEEEecc
Q psy2110         338 GNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR-----GNCLLVN-TGDRLIRVYNHQ  392 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~-~~d~~i~i~d~~  392 (622)
                      ++.  .|++||+++++.+..|.+|.++|++++|.-+     |.+++++ ..+..+.+|-+.
T Consensus       162 as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  162 ASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            765  7999999999999999999999999999776     6776665 446678888776

>KOG4547|consensus

Probab=99.41  E-value=9.3e-11  Score=112.87  Aligned_cols=200  Identities=15%  Similarity=0.194  Sum_probs=156.4

Q ss_pred             cCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--------------CCCE
Q psy2110          90 SGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--------------RGTL  155 (622)
Q Consensus        90 sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--------------d~~~  155 (622)
                      .|-..|+|....+ |.+++|+..+++....+..-...        .+...+..+...+..+|              |-..
T Consensus         2 ~~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~--------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~   72 (541)
T KOG4547|consen    2 PPALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASL--------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM   72 (541)
T ss_pred             CchhheEeecCCC-CeEEEEEccCceeeeeeccchhc--------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence            3456788887765 99999999998887766532111        11111111111222233              4457


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      ++-|...|.|.+|+...|+....+....+.         ..|.++.++.+-..|.+++.|+.+..|+......++.+++.
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~---------~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~  143 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHY---------GNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ  143 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCC---------CcceeeecccccCceEecCCceeEEEEecccceeeeeeccC
Confidence            888888999999999999888877644433         45888899999999999999999999999999999999999


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCC-----CCeEEEEeeCCCcEEEEEecC
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPR-----NDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      ...+.+++.+|||..+++++  ++|++||+++++.+..|. |.++|++++|...     |.+++.+......+.+|-...
T Consensus       144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  144 KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99999999999999999997  689999999999999998 8899999999877     677777777777788887764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.40  E-value=1.4e-09  Score=108.69  Aligned_cols=294  Identities=13%  Similarity=0.072  Sum_probs=182.9

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                      +..+++++.+ +.|..+|..+|+.+..........                 ....  .++..+++++.++.+..+|..+
T Consensus        65 ~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~-----------------~~p~--v~~~~v~v~~~~g~l~ald~~t  124 (377)
T TIGR03300        65 GGKVYAADAD-GTVVALDAETGKRLWRVDLDERLS-----------------GGVG--ADGGLVFVGTEKGEVIALDAED  124 (377)
T ss_pred             CCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcc-----------------cceE--EcCCEEEEEcCCCEEEEEECCC
Confidence            5667777754 899999999999988766544211                 1222  2466788888999999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-----eEEEEcCC
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-----CSISWSRN  247 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~  247 (622)
                      |+.+.........           ......  .+..++.++.++.++.||..+++.+..+......+     .+...  .
T Consensus       125 G~~~W~~~~~~~~-----------~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~  189 (377)
T TIGR03300       125 GKELWRAKLSSEV-----------LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A  189 (377)
T ss_pred             CcEeeeeccCcee-----------ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E
Confidence            8876554322100           011111  24567777889999999999999887765432211     11112  2


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-----------e-EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSP-----------I-LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      +..++.+..++.+..+|..+|+.+.......+           + ....+.  +. .+++++.++.++.+|..+++.+..
T Consensus       190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a~d~~tG~~~W~  266 (377)
T TIGR03300       190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAALDLRSGRVLWK  266 (377)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--CC-EEEEEEcCCEEEEEECCCCcEEEe
Confidence            24677888889999999999987665432111           0 111121  23 466677789999999988876655


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                      .....  ..  .....+..+++++.+|.+..+|..+++.+..... ......+...  .+..|++++.+|.|+++|..+ 
T Consensus       267 ~~~~~--~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-  339 (377)
T TIGR03300       267 RDASS--YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED-  339 (377)
T ss_pred             eccCC--cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC-
Confidence            44211  11  1223567888888999999999999988766532 1122222222  356888999999999999873 


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                              .+.+..+...... ...+..+. ++ .|+.++. +|.|+.|
T Consensus       340 --------G~~~~~~~~~~~~-~~~sp~~~-~~-~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       340 --------GSFVARLKTDGSG-IASPPVVV-GD-GLLVQTR-DGDLYAF  376 (377)
T ss_pred             --------CCEEEEEEcCCCc-cccCCEEE-CC-EEEEEeC-CceEEEe
Confidence                    3333333322111 01111222 33 4666665 7888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1409|consensus

Probab=99.39  E-value=1.2e-10  Score=104.32  Aligned_cols=281  Identities=11%  Similarity=0.129  Sum_probs=181.1

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC----CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS----VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      ....+.++.+.++...|+.|-.. |++.-+.+.    .....+....|...+                 ..+-|+-...+
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~~~h~~~v-----------------~~~if~~~~e~  128 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDYLAHQARV-----------------SAIVFSLTHEW  128 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEec-ceEEEEEhhhhhhhcchhhhhhhhhcce-----------------eeEEecCCcee
Confidence            34456678999999888888754 888877653    344556667788777                 48889988899


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC--CCceEEEec
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIIS  233 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~  233 (622)
                      +++.+.|..+.---.+.+..+..+.....            .+++.+.-.  +...|...|.|.+-.+.  .-..+.++.
T Consensus       129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~------------~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~  194 (404)
T KOG1409|consen  129 VLSTGKDKQFAWHCTESGNRLGGYNFETP------------ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFN  194 (404)
T ss_pred             EEEeccccceEEEeeccCCcccceEeecc------------CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEc
Confidence            99999997765444444443332221111            111111111  45566666777665543  456778899


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      +|.+.+.+++|.+....|++|..|..+.+||+-..+-  ...+.+...|..+...+--. .+++++.|+.|.+|+++...
T Consensus       195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEecccee
Confidence            9999999999999999999999999999999965443  33444777777777666444 57889999999999987543


Q ss_pred             eeecc-----------------------------cCC----CCceEEEEEeeCCCEEEEEecCCeEEEEeCC-------C
Q psy2110         312 QIVPI-----------------------------DED----SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-------A  351 (622)
Q Consensus       312 ~~~~~-----------------------------~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~  351 (622)
                      ....-                             ..|    -+...+...+.+.....+-+..-.+++-|.-       +
T Consensus       274 ~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~  353 (404)
T KOG1409|consen  274 VETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE  353 (404)
T ss_pred             ecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCC
Confidence            21110                             000    0000011111111112222222234444321       1


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..++..+..-...|+.+.+...-.+|++++.|+.|+|||++.
T Consensus       354 ~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  354 RTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             CCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            233555555557799999988888999999999999999983

>KOG1912|consensus

Probab=99.38  E-value=3.4e-10  Score=111.98  Aligned_cols=358  Identities=11%  Similarity=0.091  Sum_probs=226.1

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC------------
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR------------  152 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d------------  152 (622)
                      .++.|+|.| .||.|+.  ..|.|-|..+-+.+..+..|...|                 +.+.|.|-            
T Consensus        19 ~A~Dw~~~G-LiAygsh--slV~VVDs~s~q~iqsie~h~s~V-----------------~~VrWap~~~p~~llS~~~~   78 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH--SLVSVVDSRSLQLIQSIELHQSAV-----------------TSVRWAPAPSPRDLLSPSSS   78 (1062)
T ss_pred             cccccCccc-eEEEecC--ceEEEEehhhhhhhhccccCccce-----------------eEEEeccCCCchhccCcccc
Confidence            467899876 6777774  689999999999999999999887                 58888762            


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC---CC-CEEEEEeCCCeEEEEEcCCCce
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK---RG-TLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g-~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      .-+||++...|.|.+||...+..+..+..+..+           +..++|-+   +. ..|++-.....+.+|+..+|+.
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~-----------~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVINWLSHSNDS-----------VQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhhhhcCCCcc-----------hhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence            126788888999999999998777777766533           44555543   44 4566666678999999999999


Q ss_pred             EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCC-------CcEEEEEe-CCC-----------------C---
Q psy2110         229 AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLT-------GECEQKYR-FPS-----------------P---  279 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~-~~~-----------------~---  279 (622)
                      ............|+.+.| |.+.+..-+..|.+.+-+.-.       ++..+... |..                 +   
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            988877667888899998 777777777777777665431       22222111 111                 0   


Q ss_pred             -----eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC--CEEEEEecCCeEEEEeCCCc
Q psy2110         280 -----ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG--QHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       280 -----v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  352 (622)
                           ...++|+|.-+++++.. ....+.++|++-..++.......+.+.-+.+-|++  ..+++...+|.+.+|-.+..
T Consensus       228 ~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence                 12356788776655543 46678899998877777766666666666666654  67999999999999975431


Q ss_pred             c----------------EEEEEecC-CCCEEEEEEcCC-CCEEEEEeCCCcEEEEecccccc--cCCCCCCCcc------
Q psy2110         353 E----------------LKASFKAS-TTAIKSIEFARR-GNCLLVNTGDRLIRVYNHQEVLN--AGKDGDPEPI------  406 (622)
Q Consensus       353 ~----------------~~~~~~~~-~~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~------  406 (622)
                      .                ....+... +-.+......|. ...++.--.+|.+.+|.+.....  ....+.....      
T Consensus       307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~  386 (1062)
T KOG1912|consen  307 PTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN  386 (1062)
T ss_pred             CccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence            1                11111110 011112222333 23333344567777887763111  0000000000      


Q ss_pred             -----------eeeec---cccce---------eeeeEEEcCCC-------CeEEEeeCCCCeEEEEECCCCeeEEEEec
Q psy2110         407 -----------QKLQD---LVNKT---------MWKKCCFSGDG-------EYVCAGSARQHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       407 -----------~~~~~---~~~~~---------~~~~~~~spdg-------~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  456 (622)
                                 ..+..   +..+.         ......-.|-|       .++|.|.. .|+|.++|+.++..-+.+..
T Consensus       387 ~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~-sGTV~vvdvst~~v~~~fsv  465 (1062)
T KOG1912|consen  387 LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN-SGTVDVVDVSTNAVAASFSV  465 (1062)
T ss_pred             CceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC-CceEEEEEecchhhhhhhcc
Confidence                       00000   00000         00001112222       24566765 99999999999998888988


Q ss_pred             CCCCceeEEEECCCCCEEEE
Q psy2110         457 TKGELLLDVVWHPVRPIIAS  476 (622)
Q Consensus       457 ~~~~~v~~v~~sp~~~~l~s  476 (622)
                      |... |.++.|-...+++-.
T Consensus       466 ht~~-VkgleW~g~sslvSf  484 (1062)
T KOG1912|consen  466 HTSL-VKGLEWLGNSSLVSF  484 (1062)
T ss_pred             cccc-eeeeeeccceeEEEe
Confidence            9887 999999876665543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.2e-09  Score=108.77  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCE-EEEEeCC---CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK-IISASTD---NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH  291 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  291 (622)
                      ..|.+-|..... .+.+.... ......|+|||+. ++..+.+   ..|+++|+.+++........+......|+|||+.
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence            345555543333 33343333 7789999999985 6654443   4699999999988777777777778899999998


Q ss_pred             EEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--eEEEEeCCCccEEEEEecCCCCEE
Q psy2110         292 MFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--KVLVLSCPALELKASFKASTTAIK  366 (622)
Q Consensus       292 ~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~  366 (622)
                      ++++...++  .++++++.++.. ..+..+........|+|||+.|+..+.. +  .|+++|+.+++..+..... ..  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~~--  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-KN--  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-Cc--
Confidence            888776554  577778766543 3333333334456899999988776533 2  6888899887764433221 11  


Q ss_pred             EEEEcCCCCEEEEEeCC---------CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC
Q psy2110         367 SIEFARRGNCLLVNTGD---------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ  437 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d  437 (622)
                      ...|+|+|++|+..+..         ..|.+.|+..       +.   .+.+....   ......|||||+.|+......
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-------g~---~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-------DY---IRRLTANG---VNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-------CC---eEECCCCC---CcCCeEECCCCCEEEEEEccC
Confidence            24899999999887653         2577777763       11   12222111   112368999999988776533


Q ss_pred             --CeEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110         438 --HALYIWEKSVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       438 --~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                        ..+.++++.. .....+....+. +...+|
T Consensus       390 ~~~~L~~~~l~g-~~~~~l~~~~g~-~~~p~W  419 (419)
T PRK04043        390 NQSALGIIRLNY-NKSFLFPLKVGK-IQSIDW  419 (419)
T ss_pred             CcEEEEEEecCC-CeeEEeecCCCc-cCCCCC
Confidence              3477778754 334445443333 554444

>KOG0280|consensus

Probab=99.35  E-value=3.9e-10  Score=99.01  Aligned_cols=239  Identities=12%  Similarity=0.066  Sum_probs=161.7

Q ss_pred             EEEEcC---CCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         146 TCAFNK---RGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       146 ~~~~s~---d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                      .+.|.-   +|. .|+-+-.+|.|.++..........+.+-......    . ....++.|++.+..++++..+|.+.+-
T Consensus        74 dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~----~-~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   74 DMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS----V-VEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             eeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhh----h-eeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            445542   344 5666777899999976654333333322111110    0 124678999999999999999999966


Q ss_pred             EcCCCceE--EEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcEEEE--EeCCCCeEEEEEeCCCCeEEEE
Q psy2110         222 DFLTRGIA--KIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVL-TGECEQK--YRFPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       222 d~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~  295 (622)
                      +.......  +.++.|.-+++...|+. +.+.+++|+.|+.+..||++ .++.+..  ..|...|.++.-+|..+..+++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            65554443  47889999999999986 55788999999999999999 3333333  2378899999999998999999


Q ss_pred             eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCC--EEEEEecCCeEEEEeCCCcc-----EEEEEecCCCCEEEE
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ--HVVTGNSKGKVLVLSCPALE-----LKASFKASTTAIKSI  368 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~i~~~  368 (622)
                      |+.|..+++||.++..+...-....+.|..+..+|.-.  .++++-.+| .+|.+.....     .....+.|.+-+..-
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence            99999999999996543333333457788888888543  344444444 6666665432     334445666666666


Q ss_pred             EEcCCCCEEEEEeC-CCcEE-EEe
Q psy2110         369 EFARRGNCLLVNTG-DRLIR-VYN  390 (622)
Q Consensus       369 ~~s~~~~~l~~~~~-d~~i~-i~d  390 (622)
                      .|......|++++. |+.++ +|-
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccccccceeeeeeccccceeeeee
Confidence            66444456777653 55544 553

>KOG0280|consensus

Probab=99.33  E-value=9.8e-10  Score=96.56  Aligned_cols=220  Identities=19%  Similarity=0.213  Sum_probs=150.7

Q ss_pred             EEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccc
Q psy2110          97 CAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA  176 (622)
Q Consensus        97 ~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~  176 (622)
                      +-+-. .|.|.++..........+++-...-+...           ..-++.|++.+..++++-.+|.+.+-+.......
T Consensus        89 ~~a~a-~G~i~~~r~~~~~ss~~L~~ls~~ki~~~-----------~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le  156 (339)
T KOG0280|consen   89 LDAHA-RGQIQLYRNDEDESSVHLRGLSSKKISVV-----------EALSLDISTSGTKIFVSDSRGSISGVYETEMVLE  156 (339)
T ss_pred             eeccc-cceEEEEeeccceeeeeecccchhhhhhe-----------eeeEEEeeccCceEEEEcCCCcEEEEecceeeee
Confidence            33433 38888887665555555544332211000           0137889999999999999999986655544333


Q ss_pred             c--ccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcC-CCceEEE-eccCCcCeeEEEEcC-CCCE
Q psy2110         177 K--IISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFL-TRGIAKI-ISAHMHPVCSISWSR-NGYK  250 (622)
Q Consensus       177 ~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~  250 (622)
                      .  ..+.|..+           +..+.|+. +.+++++|+.|+.+..||++ .++.+.. .+-|...|.+|.-+| .+.+
T Consensus       157 ~vq~wk~He~E-----------~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  157 KVQTWKVHEFE-----------AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             eccccccccee-----------eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce
Confidence            3  55555433           56667765 34688999999999999998 3444443 557889999999887 6789


Q ss_pred             EEEEeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC--c---eeecccCCCCceE
Q psy2110         251 IISASTDNNVCIWDVL-TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD--H---QIVPIDEDSDLSI  324 (622)
Q Consensus       251 l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~---~~~~~~~~~~~~~  324 (622)
                      |++|+.|-.|++||.+ -++++..-...+.|..+.++|.-...++++..-...++.+...+  +   .......|...++
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~Y  305 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCY  305 (339)
T ss_pred             EEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceee
Confidence            9999999999999998 56777777778999999999987666666666666777776543  2   2334455666565


Q ss_pred             EEEEeeCCCEEEEEe
Q psy2110         325 VASFDRRGQHVVTGN  339 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~  339 (622)
                      ...|......+++++
T Consensus       306 G~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  306 GGDWDSKDSFLATCS  320 (339)
T ss_pred             ccccccccceeeeee
Confidence            555644444566643

>KOG1832|consensus

Probab=99.31  E-value=2.5e-12  Score=128.43  Aligned_cols=254  Identities=16%  Similarity=0.225  Sum_probs=178.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC--cEEEEECCC-CcEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN--NVCIWDVLT-GECE  271 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~-~~~~  271 (622)
                      ...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.+.-+.||..+++.+.-.  -..+|++.+ +...
T Consensus      1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred             cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc
Confidence            3578999999999999999999999999999999999999999999999999999877765533  467898864 3334


Q ss_pred             EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC----CCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         272 QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE----DSDLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      ..|.   .-.++.|+.... .-+.|.......+||+.+..++.++..    ....-.++.|+|+..+++   .||  .+|
T Consensus      1182 Hsf~---ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLW 1252 (1516)
T KOG1832|consen 1182 HSFD---EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLW 1252 (1516)
T ss_pred             cccc---ccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eee
Confidence            4443   234566766432 344555567789999999877665322    222335788999988876   455  579


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      |++..+.++.|......+ .-.|+|.|..++..+.     |||+++.         +.++...    ...-+.+.|...|
T Consensus      1253 DvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF---------~lLh~VP----~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTF---------KLLHSVP----SLDQCAVTFNSTG 1313 (1516)
T ss_pred             eeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHH---------HHHhcCc----cccceEEEeccCc
Confidence            999888887776554333 3359999999998874     8999842         2222222    2223457888888


Q ss_pred             CeEEEeeC-----CC-----------CeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         428 EYVCAGSA-----RQ-----------HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       428 ~~l~~~~~-----~d-----------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ..+++.-.     +|           ...+-++...-+.+.++.+...  +.+++-.|...+++...
T Consensus      1314 ~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~--~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1314 DVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRC--LLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             cchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccc--hhhhhcCCccceEEEEe
Confidence            87754431     00           1244555555566777766553  77888888888877664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=6.2e-09  Score=103.73  Aligned_cols=212  Identities=8%  Similarity=0.048  Sum_probs=132.2

Q ss_pred             CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe-EEEEeeC--CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCE
Q psy2110         258 NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH-MFLVCPM--RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQH  334 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (622)
                      ..|.+-|..... .+.+..........|+|+++. ++++...  ...++++|+.++....... ..+......|+|||+.
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            356666655443 333333347788999999986 4444433  3568888987765443332 4455566789999987


Q ss_pred             EEEEe-c--CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEecccccccCCCCCCCccee
Q psy2110         335 VVTGN-S--KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-DR--LIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       335 l~~~~-~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      ++... .  +..|+++++.+++.. .+..+........|+|||+.|+..+. .+  .|+++++..       +..   +.
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-------g~~---~r  315 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-------GSV---EQ  315 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-------CCe---Ee
Confidence            76543 2  357888898877643 34444333446689999998888764 33  477777662       111   11


Q ss_pred             eeccccceeeeeEEEcCCCCeEEEeeCCC--------CeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--
Q psy2110         409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQ--------HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--  478 (622)
Q Consensus       409 ~~~~~~~~~~~~~~~spdg~~l~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--  478 (622)
                      +... ..   ....|||||++|+......        ..|++.|+.+++. +.+.... . .....|+|||+.|+...  
T Consensus       316 lt~~-g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~-~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        316 VVFH-GK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-V-NQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             CccC-CC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-C-cCCeEECCCCCEEEEEEcc
Confidence            1110 11   1138999999998876532        3789999988875 4444332 2 34689999999887766  


Q ss_pred             CCc--EEEeecCC
Q psy2110         479 SGV--VSLWAQNQ  489 (622)
Q Consensus       479 dg~--v~iw~~~~  489 (622)
                      .+.  +.+.++++
T Consensus       389 ~~~~~L~~~~l~g  401 (419)
T PRK04043        389 GNQSALGIIRLNY  401 (419)
T ss_pred             CCcEEEEEEecCC
Confidence            343  44444443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=3.7e-08  Score=91.95  Aligned_cols=218  Identities=18%  Similarity=0.161  Sum_probs=153.4

Q ss_pred             EEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEEC-CCCCEEEEEeCCCeEEEEEc
Q psy2110         146 TCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       146 ~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~iwd~  223 (622)
                      ++.|.+ ++.++++--..+.|..|+..++.... +...             ....+++. ++++ |+.+.. +.+.++|.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-------------~~~G~~~~~~~g~-l~v~~~-~~~~~~d~   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-------------GPNGMAFDRPDGR-LYVADS-GGIAVVDP   67 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-------------SEEEEEEECTTSE-EEEEET-TCEEEEET
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-------------CCceEEEEccCCE-EEEEEc-CceEEEec
Confidence            678888 67677777678999999988864432 1111             14567777 6655 445544 44566698


Q ss_pred             CCCceEEEecc-----CCcCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCC
Q psy2110         224 LTRGIAKIISA-----HMHPVCSISWSRNGYKIISASTD--------NNVCIWDVLTGECEQKYRFPSPILKVQFHPRND  290 (622)
Q Consensus       224 ~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  290 (622)
                      .+++.......     .....+.+++.++|+..++....        |.|..++.. ++.......-.....++|+|+++
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred             CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence            88865443332     34678899999999977766543        457778877 66655555556678999999999


Q ss_pred             eEEEEeeCCCcEEEEEecCCce-------eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC
Q psy2110         291 HMFLVCPMRHAAVLVDTDGDHQ-------IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTT  363 (622)
Q Consensus       291 ~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  363 (622)
                      .++++-+..+.|..+++.....       ...+.........++++.+|++.++....+.|.+++.. ++.+..+.....
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~  225 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP  225 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence            8888999999999999964322       22223333347789999999988888888999999987 999888887767


Q ss_pred             CEEEEEE-cCCCCEEEEEe
Q psy2110         364 AIKSIEF-ARRGNCLLVNT  381 (622)
Q Consensus       364 ~i~~~~~-s~~~~~l~~~~  381 (622)
                      .+++++| .++.+.|++.+
T Consensus       226 ~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  226 RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEEECCCCCEEEEEe
Confidence            8999999 46766666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.22  E-value=4.3e-08  Score=89.76  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=165.0

Q ss_pred             eeEEEEcC-CCCEEEEEeCCC-cEEEEECCCCcEEEEEeCCCC---eEEEEEeCCCCeEEEEe----eCCCcEEEEEec-
Q psy2110         239 VCSISWSR-NGYKIISASTDN-NVCIWDVLTGECEQKYRFPSP---ILKVQFHPRNDHMFLVC----PMRHAAVLVDTD-  308 (622)
Q Consensus       239 v~~~~~s~-~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~----~~~~~i~~~d~~-  308 (622)
                      ...++.+| .+..++.+-.-| ...+||..+++..+.+..+..   .-.-.|+++|+.++.+-    ...|.|-+||.. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            44678888 556677777766 478999999999887763322   23578999999766663    446789999998 


Q ss_pred             CCceeecccCCCCceEEEEEeeCCCEEEEEec------------------CCeEEEEeCCCccEEEEEe----cCCCCEE
Q psy2110         309 GDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS------------------KGKVLVLSCPALELKASFK----ASTTAIK  366 (622)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~----~~~~~i~  366 (622)
                      +-..+..+..+.-.-..+.+.|||+.|+++..                  +-.+...|..+|+++.+..    .|...|+
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            66778888888777788899999988877542                  2346667788898887744    3778899


Q ss_pred             EEEEcCCCCEEEEEeCCC-------cEEEEecccccccCCCCCCCcceeeecc-----ccceeeeeEEEcCCCCeEEEee
Q psy2110         367 SIEFARRGNCLLVNTGDR-------LIRVYNHQEVLNAGKDGDPEPIQKLQDL-----VNKTMWKKCCFSGDGEYVCAGS  434 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~  434 (622)
                      .+++.++|..++..-..+       .|.+++...           .+..+...     .-...+-+++++++|.++++.+
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-----------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts  235 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-----------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS  235 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-----------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence            999999987544432221       233443331           12222211     1224556889999999998888


Q ss_pred             CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEE
Q psy2110         435 ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSL  484 (622)
Q Consensus       435 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~i  484 (622)
                      -..+.+.+||..+++++....-..   +..++-.+++ ++++.+.|.+..
T Consensus       236 PrGg~~~~~d~~tg~~~~~~~l~D---~cGva~~~~~-f~~ssG~G~~~~  281 (305)
T PF07433_consen  236 PRGGRVAVWDAATGRLLGSVPLPD---ACGVAPTDDG-FLVSSGQGQLIR  281 (305)
T ss_pred             CCCCEEEEEECCCCCEeeccccCc---eeeeeecCCc-eEEeCCCccEEE
Confidence            888999999999999888776655   7788888877 777776665433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=1.9e-08  Score=111.38  Aligned_cols=247  Identities=13%  Similarity=0.155  Sum_probs=163.4

Q ss_pred             eEEEEcCC-CCEEEEeeCCCcEEEEecCCcccccccccccCC-Ccccc--cccccceEEEEECCCCCEEEEEeC-CCeEE
Q psy2110         145 VTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP-EFDGA--LDCISLAVTCAFNKRGTLLAVGCN-DGRIV  219 (622)
Q Consensus       145 ~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~  219 (622)
                      ..++++++ +.++++-+.++.|++||... ..+..+...... ...+.  .........++++++++.|+++.. ++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            47888875 55666667788899999754 333333221100 00111  011223578899999887666544 57799


Q ss_pred             EEEcCCCceEEEeccC-----------------CcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe------
Q psy2110         220 LWDFLTRGIAKIISAH-----------------MHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR------  275 (622)
Q Consensus       220 iwd~~~~~~~~~~~~~-----------------~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------  275 (622)
                      ++|+.++.. .++.+-                 -..-..++++| ++..+++.+.++.|++||..++.......      
T Consensus       650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            999876543 333110                 11235799999 55566666778899999998775432110      


Q ss_pred             ---------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc-------------cC--------CCCceEE
Q psy2110         276 ---------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI-------------DE--------DSDLSIV  325 (622)
Q Consensus       276 ---------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-------------~~--------~~~~~~~  325 (622)
                               .-.....++++|++..++++...++.|++||+.++......             ..        .......
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                     01235679999999988888889999999998765322110             00        0112357


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-------------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ++++++|..+++...++.|++||..++.......             +.-.....++++++|+.+++.+.++.|++||+.
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            8899999988888899999999998776553321             111246789999999988888889999999998


Q ss_pred             c
Q psy2110         393 E  393 (622)
Q Consensus       393 ~  393 (622)
                      +
T Consensus       889 ~  889 (1057)
T PLN02919        889 K  889 (1057)
T ss_pred             C
Confidence            4

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=5.6e-08  Score=107.82  Aligned_cols=250  Identities=11%  Similarity=0.088  Sum_probs=158.5

Q ss_pred             eEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceEEEecc-C-------------CcCeeEEEEcCCCCEEEEEeC-CCcE
Q psy2110         197 AVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISA-H-------------MHPVCSISWSRNGYKIISAST-DNNV  260 (622)
Q Consensus       197 v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~s~~~-d~~i  260 (622)
                      ...+++++. ++++++-+.++.|+++|.. +..+..+.+ .             -.....++++++++.|+.+.. .+.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            456788875 5566666778899999975 444433322 1             123578999998887766654 4679


Q ss_pred             EEEECCCCcEEEEEeC-----------------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec--------
Q psy2110         261 CIWDVLTGECEQKYRF-----------------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP--------  315 (622)
Q Consensus       261 ~iwd~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------  315 (622)
                      +++|+.++........                 -.....++++|++..++++...++.|++||..++.....        
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            9999877654322110                 113467999997777888888899999999876533210        


Q ss_pred             ccC------CCCceEEEEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEec-------------C--------CCCEEE
Q psy2110         316 IDE------DSDLSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKA-------------S--------TTAIKS  367 (622)
Q Consensus       316 ~~~------~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-------------~--------~~~i~~  367 (622)
                      ...      .......++++|+++.| ++.+.++.|++||+.++.......+             .        -..-.+
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            000      11234568999999855 4556678999999987653211100             0        112358


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc----eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         368 IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI----QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      ++++++|+.+++.+.++.|++||..........+....-    .......  .....++++++|+.+++-+. ++.|++|
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l--~~P~GIavd~dG~lyVaDt~-Nn~Irvi  885 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL--SEPAGLALGENGRLFVADTN-NSLIRYL  885 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc--CCceEEEEeCCCCEEEEECC-CCEEEEE
Confidence            899999998888888999999998742211100000000    0000000  12346899999987666654 8999999


Q ss_pred             ECCCCee
Q psy2110         444 EKSVGNL  450 (622)
Q Consensus       444 d~~~~~~  450 (622)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9998765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.19  E-value=9.8e-10  Score=97.19  Aligned_cols=250  Identities=18%  Similarity=0.260  Sum_probs=156.9

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccc---e------e-------------------------cccCceEEeec
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---L------K-------------------------ASRGNCLLVNT   47 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~---~------~-------------------------~~~~~~l~~~~   47 (622)
                      |.|+++.|...|.|||||...|.|.++......   .      +                         ....+.++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            578999999999999999999999999765431   1      1                         11335678888


Q ss_pred             CCceEEEeechhhhhc-------------CCCC---------------CCc----cchhhhhhccccceeEEEEcCCCCE
Q psy2110          48 GDRLIRVYNHQEVLNA-------------GKDG---------------DPE----PIQKLQDLVNKTMWKKCCFSGDGEY   95 (622)
Q Consensus        48 ~d~~i~~w~~~~~~~~-------------~~~~---------------~~~----~~~~~~~~~~~~~~~~~~~sp~~~~   95 (622)
                      .|++|++|.+......             ...+               +..    ..+++..-.+...+.++.|+.|.+.
T Consensus       107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et  186 (460)
T COG5170         107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET  186 (460)
T ss_pred             CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence            9999999988553110             0010               000    0011122334445668899999999


Q ss_pred             EEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCCCcEEEEecC
Q psy2110          96 VCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFL  171 (622)
Q Consensus        96 l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~  171 (622)
                      ++++.  +-.|.+|++.--.   .+..++.|.-.            +....|++..|+|... .+...+..|.|++-|++
T Consensus       187 ~lSaD--dLrINLWnl~i~D~sFnIVDiKP~nme------------eLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         187 LLSAD--DLRINLWNLEIIDGSFNIVDIKPHNME------------ELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeecc--ceeeeeccccccCCceEEEeccCccHH------------HHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            98875  5789999985321   22223333321            2233457889999754 55556677999999987


Q ss_pred             Ccccc----cccccccCC-CcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccCC---------
Q psy2110         172 TRGIA----KIISAHMHP-EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHM---------  236 (622)
Q Consensus       172 ~~~~~----~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~---------  236 (622)
                      ...+-    ..+.....+ .........+.|..+.|+++|+++++-. --++++||++. ..++.++.-|.         
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~  331 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV  331 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhh
Confidence            43211    111111000 0011111235678899999999998765 45899999875 34666664332         


Q ss_pred             ---cCe---eEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         237 ---HPV---CSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       237 ---~~v---~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                         ..|   ..+.||.|.+.+++|+..+..-++-+.
T Consensus       332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence               223   357888899999999988877777543

>KOG1064|consensus

Probab=99.18  E-value=1.7e-10  Score=123.95  Aligned_cols=193  Identities=16%  Similarity=0.263  Sum_probs=156.5

Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      .|.++.-+|...+.+||+.||.|++|....++.+..+.....          +.|+.+.|+.+|+.+..+..||.+.+|.
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----------s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----------SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc----------chhhhhhhcccCCceeeeccCCceeecc
Confidence            346777788888999999999999999988877766654432          3578899999999999999999999999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcE--EEEEeCCCCeEEEEEeCCCCeEEEEee
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGEC--EQKYRFPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      +. .++....++|......+.|-.  ..+++++.   ++.+.+||..-...  .-..-|.+.++++++-|... ++++|+
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisgg 2355 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGG 2355 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecC
Confidence            86 667777889999999998865  56777654   57899999764322  22244899999999999765 899999


Q ss_pred             CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         298 MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      .+|.+++||++..+.+..+..         ++ ...++++|+..|.++||++.....+.++.
T Consensus      2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999998776666654         33 46789999999999999999887777765

>KOG0309|consensus

Probab=99.16  E-value=4e-10  Score=110.89  Aligned_cols=246  Identities=18%  Similarity=0.250  Sum_probs=166.6

Q ss_pred             EEEEcCCC---CEEEEecCCCCeEEEEEcC---CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEE
Q psy2110          86 KCCFSGDG---EYVCAGSARQHALYIWEKS---VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAV  158 (622)
Q Consensus        86 ~~~~sp~~---~~l~~~~~~~~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s  158 (622)
                      ...|||..   .++++.+ . ..-.+|++.   +...-..+.+|...+                 +.+.|+|... .|++
T Consensus        72 d~qws~h~a~~~wiVsts-~-qkaiiwnlA~ss~~aIef~lhghsrai-----------------td~n~~~q~pdVlat  132 (1081)
T KOG0309|consen   72 DVQWSPHPAKPYWIVSTS-N-QKAIIWNLAKSSSNAIEFVLHGHSRAI-----------------TDINFNPQHPDVLAT  132 (1081)
T ss_pred             ceecccCCCCceeEEecC-c-chhhhhhhhcCCccceEEEEecCccce-----------------eccccCCCCCcceee
Confidence            46777763   2455544 3 456689874   334456678888877                 6999999765 8899


Q ss_pred             eeCCCcEEEEecCCccc-ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCC
Q psy2110         159 GCNDGRIVLWDFLTRGI-AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHM  236 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~  236 (622)
                      ++.|..+..||+.+-.. ...+..-.           +....++|+-....+.+.+....|.+||.+.+ .++..+++|.
T Consensus       133 csvdt~vh~wd~rSp~~p~ys~~~w~-----------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v  201 (1081)
T KOG0309|consen  133 CSVDTYVHAWDMRSPHRPFYSTSSWR-----------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV  201 (1081)
T ss_pred             ccccccceeeeccCCCcceeeeeccc-----------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc
Confidence            99999999999987432 22211111           23567888875555555666788999999865 4678899999


Q ss_pred             cCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC--cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         237 HPVCSISWSR-NGYKIISASTDNNVCIWDVLTG--ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       237 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      ..|+.++|.. .-..+.+.+.|++|+.||....  +..+......++..-.+.|-|+..++.-...+.            
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n------------  269 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN------------  269 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe------------
Confidence            9999999976 3346889999999999998754  334455566788888888877643332211111            


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEcCCC----------CEEEEEeC
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFARRG----------NCLLVNTG  382 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~~~~  382 (622)
                                          .+..-..+.....|+..+ .+++.+|.+|...|..+.|-..+          -.|++-+.
T Consensus       270 --------------------~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk  329 (1081)
T KOG0309|consen  270 --------------------MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK  329 (1081)
T ss_pred             --------------------eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence                                000011122234455443 35788999999888877775432          26999999


Q ss_pred             CCcEEEEeccc
Q psy2110         383 DRLIRVYNHQE  393 (622)
Q Consensus       383 d~~i~i~d~~~  393 (622)
                      |..+++|-+..
T Consensus       330 D~~lrlWpI~~  340 (1081)
T KOG0309|consen  330 DQTLRLWPIDS  340 (1081)
T ss_pred             CCceEeeeccH
Confidence            99999998873

>KOG1064|consensus

Probab=99.15  E-value=3.5e-10  Score=121.72  Aligned_cols=183  Identities=14%  Similarity=0.237  Sum_probs=146.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      .|.++.-+|...+.++|+.||.+++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|.+. .++....
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~ 2288 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW 2288 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecc
Confidence            46777888888899999999999999998888776665 334789999999999999999999999999987 4444444


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEe---eCCCcEEEEEecCC--ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVC---PMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      + |......+.|-..   +++++   +.++.+.+||..-.  ..... ..|.+.++++++-|..+.+++|+.+|.|++||
T Consensus      2289 qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred             ccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence            3 6666666666652   33333   45678999998533  22223 78999999999999999999999999999999


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ++..++++.++.         +. ...+|++++..|.|+||++.+
T Consensus      2365 ~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             hHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccc
Confidence            999888877765         44 566899999999999999984

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.12  E-value=2e-07  Score=93.53  Aligned_cols=308  Identities=10%  Similarity=0.031  Sum_probs=178.4

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA-VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      +..+++++.+|.+.-+|..+|+.+-................ ..+ ..+..  ++..++.++.++.++.+|..+|+.+..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKS-ALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccc-cccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            55777777888999999988877655443221100000000 000 01111  345677888899999999999998877


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE------EEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPIL------KVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      .........+...  .+..++.+..++.+..+|..+|+.+..+....+..      +....  +. .++.+..++.+..+
T Consensus       146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~  220 (394)
T PRK11138        146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAV  220 (394)
T ss_pred             ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEE
Confidence            7643221111222  24467777788999999999999888776432211      11111  22 35566778888888


Q ss_pred             EecCCceeecccCCCC----c---eEEEEEee--CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCE
Q psy2110         306 DTDGDHQIVPIDEDSD----L---SIVASFDR--RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNC  376 (622)
Q Consensus       306 d~~~~~~~~~~~~~~~----~---~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  376 (622)
                      |..+++.+........    .   ...+..+|  .+..+++++.+|.+..+|..+++.+.+....  ....+..  .+..
T Consensus       221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~  296 (394)
T PRK11138        221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGR  296 (394)
T ss_pred             EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCE
Confidence            8887765543321110    0   00011111  3557777788999999999999877654321  1112222  4567


Q ss_pred             EEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec
Q psy2110         377 LLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       377 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  456 (622)
                      +++++.++.+..+|..+..         .+-....... ....+...  .+.+|+.++. +|.|++.|..+|+.+...+-
T Consensus       297 vy~~~~~g~l~ald~~tG~---------~~W~~~~~~~-~~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        297 IYLVDQNDRVYALDTRGGV---------ELWSQSDLLH-RLLTAPVL--YNGYLVVGDS-EGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             EEEEcCCCeEEEEECCCCc---------EEEcccccCC-CcccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEc
Confidence            7888889999999987421         1111110000 00111112  2456777776 89999999999998877764


Q ss_pred             CCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         457 TKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       457 ~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ............ + ..|+.++ ||.++.++.
T Consensus       364 ~~~~~~s~P~~~-~-~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        364 DSSGFLSEPVVA-D-DKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCcceeCCEEE-C-CEEEEEeCCceEEEEeC
Confidence            332212222232 3 3555556 999887764

>KOG4190|consensus

Probab=99.11  E-value=3e-10  Score=108.01  Aligned_cols=268  Identities=15%  Similarity=0.229  Sum_probs=174.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-------CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLT-------RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      |..++--.+.+-+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|-.+-++++++  ||.|.+||.--++
T Consensus       738 iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr  815 (1034)
T KOG4190|consen  738 IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGR  815 (1034)
T ss_pred             hHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccc
Confidence            34444344556788999999999999863       23677888999999999999998888776  7899999988887


Q ss_pred             EEEEEe---CCCCeEEEEEeCC-CCeEEEE-eeCCCcEEEEEecCCceeec-----ccCCCCceEEEEEeeCCCEEEEEe
Q psy2110         270 CEQKYR---FPSPILKVQFHPR-NDHMFLV-CPMRHAAVLVDTDGDHQIVP-----IDEDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       270 ~~~~~~---~~~~v~~~~~~~~-~~~~~~~-~~~~~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      .+..+.   ..+.+..+..-++ .+.++++ ++...+++++|.+...-...     ....+..+.+++..+.|+.++++-
T Consensus       816 ~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L  895 (1034)
T KOG4190|consen  816 LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL  895 (1034)
T ss_pred             hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh
Confidence            766443   2344444544444 3444444 47888999999987643332     344567788999999999999999


Q ss_pred             cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EecccccccCC-CCCCCcceeeecccccee
Q psy2110         340 SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV-YNHQEVLNAGK-DGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       340 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i-~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~  417 (622)
                      .+|.|.+.|.++|+.+...+...-....++ .|..+.|+....|.++.+ |..-....... ...+++...+        
T Consensus       896 SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--------  966 (1034)
T KOG4190|consen  896 SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--------  966 (1034)
T ss_pred             cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--------
Confidence            999999999999999888776555554443 355666777777888887 76542111100 0011111111        


Q ss_pred             eeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe-----eEEEEec--CCCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110         418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-----LVKILHG--TKGELLLDVVWHPVRPIIASIS-SGVVSL  484 (622)
Q Consensus       418 ~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~-----~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~-dg~v~i  484 (622)
                            -.-|.-++++.. .+.+.+|--. ++     .+..++.  ..+ ..+.++--|-+.-+..+. .|.|.+
T Consensus       967 ------qsvgpSLV~a~~-Gn~lgVYad~-a~~ha~stitKiR~d~f~G-~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  967 ------QSVGPSLVTAQN-GNILGVYADS-AELHAESTITKIRPDEFPG-TLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ------hccCceeEEecc-CcEEEEEecc-hhhhhhhhhccccccccCC-ccceeeeccccchhhccCCCCceee
Confidence                  113445566654 5566676411 11     1111211  112 267788888776555555 777764

>KOG0309|consensus

Probab=99.11  E-value=1e-09  Score=108.07  Aligned_cols=280  Identities=14%  Similarity=0.256  Sum_probs=185.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccC-CcCeeEEEEcCCC---CEEEEEeCCCcEEEEECCCC--
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAH-MHPVCSISWSRNG---YKIISASTDNNVCIWDVLTG--  268 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~~~~--  268 (622)
                      .+.++.++|.|+-++.++.-| +.+.|+.. ..+.+.+... .-.|-...|++..   .++++.+ ...-.+|++...  
T Consensus        26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSS  103 (1081)
T ss_pred             cccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCc
Confidence            456788999999998888766 55666654 3333333211 1245667787743   2455544 345568887533  


Q ss_pred             cEEEEE--eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-eeecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         269 ECEQKY--RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       269 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      +.+..+  .|...++.+.|+|..+.++++++.+..+..||+++.. ++..+..-......+.|+.....+.+.+....|.
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            333333  3778899999999999999999999999999999864 4444444455556778887665666666677899


Q ss_pred             EEeCCCc-cEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110         346 VLSCPAL-ELKASFKASTTAIKSIEFARR-GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       346 i~d~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (622)
                      +||.+.+ .++..+++|-..|++++|..- ...+.+.+.|++|+.||.......       .-+..   ....++..-++
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-------~~~~v---tt~~piw~~r~  253 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-------SKRTV---TTNFPIWRGRY  253 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-------cceec---cccCcceeccc
Confidence            9999865 478889999999999988653 345788899999999998842111       11111   11222333456


Q ss_pred             cCCCCeEEEeeCC-CCeEE---------EEECCC-CeeEEEEecCCCCceeEEEECCCCC----------EEEEEe-CCc
Q psy2110         424 SGDGEYVCAGSAR-QHALY---------IWEKSV-GNLVKILHGTKGELLLDVVWHPVRP----------IIASIS-SGV  481 (622)
Q Consensus       424 spdg~~l~~~~~~-d~~i~---------iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~~~----------~l~s~~-dg~  481 (622)
                      -|-|+-.+.--.. +..+.         .|+..+ .+++..+.||.+. |..+.|-..+.          .|++-+ |.+
T Consensus       254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence            6644433322211 22232         344433 3678999999987 88887754322          688988 999


Q ss_pred             EEEeecC
Q psy2110         482 VSLWAQN  488 (622)
Q Consensus       482 v~iw~~~  488 (622)
                      +++|.+.
T Consensus       333 lrlWpI~  339 (1081)
T KOG0309|consen  333 LRLWPID  339 (1081)
T ss_pred             eEeeecc
Confidence            9999986

>KOG4532|consensus

Probab=99.11  E-value=4.3e-08  Score=85.27  Aligned_cols=233  Identities=7%  Similarity=-0.004  Sum_probs=146.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEE-e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEE
Q psy2110         248 GYKIISASTDNNVCIWDVLTGECEQKY-R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIV  325 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  325 (622)
                      ..+|+.|+..|...+|...+.+....+ . +...|.-+.-.-+...-+..++.|.+++++++..+..........-.+..
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            457899999999999999876543322 2 33323222212223334667788888888887654333332222233778


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEeCCCc-cE-EE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         326 ASFDRRGQHVVTGNSKGKVLVLSCPAL-EL-KA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      ++++++++++++.+....|..|.+... +. +. ........-.+..|+.....+|++..||++.|||++..      +.
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~------~t  237 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM------AT  237 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc------cc
Confidence            999999999999999999999988643 32 22 22233444567889999999999999999999999852      22


Q ss_pred             CCcceeeeccccceeeeeEEEcCCCC--eEEEeeCCCCeEEEEECCCCeeEEEEecCCC-------CceeEEEECCCCCE
Q psy2110         403 PEPIQKLQDLVNKTMWKKCCFSGDGE--YVCAGSARQHALYIWEKSVGNLVKILHGTKG-------ELLLDVVWHPVRPI  473 (622)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~v~~v~~sp~~~~  473 (622)
                      +.....-....+...+..|.|++-|.  +|...-. -+.+.+-|++++...+.+.-..+       ..|..-.|+.++..
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            22222233334556778899998663  3444332 56899999998876655543221       12444555555554


Q ss_pred             EEEEeCCcEEEeec
Q psy2110         474 IASISSGVVSLWAQ  487 (622)
Q Consensus       474 l~s~~dg~v~iw~~  487 (622)
                      +.+...-.+.-|++
T Consensus       317 ~~v~~e~~~ae~ni  330 (344)
T KOG4532|consen  317 NDVKNELQGAEYNI  330 (344)
T ss_pred             cccccchhhheeec
Confidence            44444333444444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.09  E-value=2.6e-07  Score=84.75  Aligned_cols=229  Identities=16%  Similarity=0.166  Sum_probs=157.1

Q ss_pred             eEEEEcC-CCCEEEEeeCCCc-EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----CCe
Q psy2110         145 VTCAFNK-RGTLLAVGCNDGR-IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----DGR  217 (622)
Q Consensus       145 ~~~~~s~-d~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~  217 (622)
                      +.++.+| ....++.+-.-|+ ..+||..+++....+......++.++         -.||+||++|++.-.     .|.
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH---------g~fs~dG~~LytTEnd~~~g~G~   78 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH---------GVFSPDGRLLYTTENDYETGRGV   78 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC---------EEEcCCCCEEEEeccccCCCcEE
Confidence            4778889 4556667766554 77899999988887766554443332         489999999998743     588


Q ss_pred             EEEEEcC-CCceEEEeccCCcCeeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCcEEEEEe---
Q psy2110         218 IVLWDFL-TRGIAKIISAHMHPVCSISWSRNGYKIISAST------------------DNNVCIWDVLTGECEQKYR---  275 (622)
Q Consensus       218 i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------------------d~~i~iwd~~~~~~~~~~~---  275 (622)
                      |-|||.. +.+.+..+..|.-.-..+.+.|||+.|+.+..                  +-++.+.|..+|+.+....   
T Consensus        79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~  158 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP  158 (305)
T ss_pred             EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence            9999998 66777788877777788999999988876631                  2346777888898887754   


Q ss_pred             --CCCCeEEEEEeCCCCeEEEEeeCCC-------cEEEEEecCCceeec-----ccCCCCceEEEEEeeCCCEEEEEe-c
Q psy2110         276 --FPSPILKVQFHPRNDHMFLVCPMRH-------AAVLVDTDGDHQIVP-----IDEDSDLSIVASFDRRGQHVVTGN-S  340 (622)
Q Consensus       276 --~~~~v~~~~~~~~~~~~~~~~~~~~-------~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~-~  340 (622)
                        +...+..+++.++|. +++.....+       .+.+++.........     .......+-++++++++..+++.+ .
T Consensus       159 ~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  159 DLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             cccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence              445799999999986 333333222       122333222211111     123456788999999998886655 5


Q ss_pred             CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110         341 KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       341 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      .|.+.+||..+++.+......  .+..++-.+++ ++++ +..|.+.
T Consensus       238 Gg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~s-sG~G~~~  280 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVS-SGQGQLI  280 (305)
T ss_pred             CCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEe-CCCccEE
Confidence            678999999999988766543  45677777776 4444 4445443

>KOG4532|consensus

Probab=99.08  E-value=4.7e-08  Score=85.06  Aligned_cols=230  Identities=10%  Similarity=0.012  Sum_probs=149.1

Q ss_pred             CCCEEEEecCCCCeEEEEEcCCCce-EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110          92 DGEYVCAGSARQHALYIWEKSVGNL-VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  170 (622)
Q Consensus        92 ~~~~l~~~~~~~~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~  170 (622)
                      ...+||.|+.. |...+|...+.+. +.....|...|..              +...+  .....+..++.|.++++.++
T Consensus        83 kc~~la~gG~~-g~fd~~~~~tn~~h~~~cd~snn~v~~--------------~~r~c--d~~~~~~i~sndht~k~~~~  145 (344)
T KOG4532|consen   83 KCVTLADGGAS-GQFDLFACNTNDGHLYQCDVSNNDVTL--------------VKRYC--DLKFPLNIASNDHTGKTMVV  145 (344)
T ss_pred             cccEEEecccc-ceeeeecccCcccceeeecccccchhh--------------hhhhc--ccccceeeccCCcceeEEEE
Confidence            34678888876 9999999986554 3334444443310              00111  11224667788899999988


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEE-EeccCCcCeeEEEEcCC
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAK-IISAHMHPVCSISWSRN  247 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~-~~~~~~~~v~~~~~s~~  247 (622)
                      .-+..........           -.+..+++++|++++++.+....|..|.+....  ... ........-.+..|+..
T Consensus       146 ~~~s~~~~~h~~~-----------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~  214 (344)
T KOG4532|consen  146 SGDSNKFAVHNQN-----------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN  214 (344)
T ss_pred             ecCcccceeeccc-----------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence            7653332222111           025789999999999999999999999987543  222 23334445578899999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEE------eCCCCeEEEEEeCCCC-eEEEEeeCCCcEEEEEecCCceeecccC--
Q psy2110         248 GYKIISASTDNNVCIWDVLTGECEQKY------RFPSPILKVQFHPRND-HMFLVCPMRHAAVLVDTDGDHQIVPIDE--  318 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~--  318 (622)
                      ...+|++..||++.|||++........      .|.+.++.+.|++-|. .+++....-+.+.+.|+++......+..  
T Consensus       215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            999999999999999999865432221      2678899999998664 3555666667889999987643332221  


Q ss_pred             ------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         319 ------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       319 ------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                            ....+....|+.++..+.+.+++. +.-|++.
T Consensus       295 d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  295 DVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             cccccccccccccccccCCCcccccccchh-hheeecc
Confidence                  123356666777766666655543 4445543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.07  E-value=5.2e-07  Score=84.19  Aligned_cols=221  Identities=16%  Similarity=0.173  Sum_probs=140.7

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEe-CCCCeEEEEeeCCCcEEEEEecCCceeecccC
Q psy2110         241 SISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFH-PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       241 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      ++.|.+ ++.++++-...+.|..|+..+++... +..+. ...+++. ++ ..+ +++.. +.+.++|..++........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l-~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRL-YVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEE-EEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEE-EEEEc-CceEEEecCCCcEEEEeec
Confidence            578887 66666666668899999988775533 44444 7777787 55 434 44444 4445558877643322221


Q ss_pred             -----CCCceEEEEEeeCCCEEEEEecC--------CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCC
Q psy2110         319 -----DSDLSIVASFDRRGQHVVTGNSK--------GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDR  384 (622)
Q Consensus       319 -----~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~  384 (622)
                           .......++++++|++.++....        |.|..++.. ++...... .-...+.|+|+|+++.|+++ +..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence                 34556789999999977775543        568888877 55433333 34567899999999987655 5678


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccc-eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCcee
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLL  463 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  463 (622)
                      .|..|++....     ......+.+...... ...-.+++..+|++.++... .+.|.+++.. |+++..+...... ++
T Consensus       157 ~i~~~~~~~~~-----~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-~~~I~~~~p~-G~~~~~i~~p~~~-~t  228 (246)
T PF08450_consen  157 RIWRFDLDADG-----GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-GGRIVVFDPD-GKLLREIELPVPR-PT  228 (246)
T ss_dssp             EEEEEEEETTT-----CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-TTEEEEEETT-SCEEEEEE-SSSS-EE
T ss_pred             eeEEEeccccc-----cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-CCEEEEECCC-ccEEEEEcCCCCC-EE
Confidence            89999986310     001111222221222 23457899999988777665 7899999987 9999888877444 99


Q ss_pred             EEEE-CCCCCEEEE
Q psy2110         464 DVVW-HPVRPIIAS  476 (622)
Q Consensus       464 ~v~~-sp~~~~l~s  476 (622)
                      +++| -|+...|+.
T Consensus       229 ~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  229 NCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEEESTTSSEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            9999 466665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=4.9e-07  Score=80.23  Aligned_cols=241  Identities=16%  Similarity=0.153  Sum_probs=138.5

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      ++.++||+.||+.-  |..|.|=..+..  ..+....-+.++-              ..-+.++||||+.+||.+...|+
T Consensus         3 ~~~~~~Gk~lAi~q--d~~iEiRsa~Ddf~si~~kcqVpkD~~--------------PQWRkl~WSpD~tlLa~a~S~G~   66 (282)
T PF15492_consen    3 LALSSDGKLLAILQ--DQCIEIRSAKDDFSSIIGKCQVPKDPN--------------PQWRKLAWSPDCTLLAYAESTGT   66 (282)
T ss_pred             eeecCCCcEEEEEe--ccEEEEEeccCCchheeEEEecCCCCC--------------chheEEEECCCCcEEEEEcCCCe
Confidence            57789999999886  367776655432  2222222222211              11168999999999999999999


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCC------CEEEEEeCCCeEEEEEcCCC-----ceEEEec
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG------TLLAVGCNDGRIVLWDFLTR-----GIAKIIS  233 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~~~~~dg~i~iwd~~~~-----~~~~~~~  233 (622)
                      |+++|+.... +..+.....  ..+.  ....|..+.|-+-.      ..|++-...|.++-|-+..+     +....+.
T Consensus        67 i~vfdl~g~~-lf~I~p~~~--~~~d--~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs  141 (282)
T PF15492_consen   67 IRVFDLMGSE-LFVIPPAMS--FPGD--LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS  141 (282)
T ss_pred             EEEEecccce-eEEcCcccc--cCCc--cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence            9999987643 333333221  1111  12346666665432      24555567888887776432     2223332


Q ss_pred             ---cCCcCeeEEEEcCCCCEEEEEeCCCc-----------EEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         234 ---AHMHPVCSISWSRNGYKIISASTDNN-----------VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       234 ---~~~~~v~~~~~s~~~~~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                         .+...|.++.++|..+.|+.|+....           +..|.+-++.+-..         ....-+ +.+-..... 
T Consensus       142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~v~~~~-~~~~~~~~~-  210 (282)
T PF15492_consen  142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---------QVTSSE-DDITASSKR-  210 (282)
T ss_pred             ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---------EccccC-ccccccccc-
Confidence               24678999999999888887764321           33333332222111         100000 000000000 


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS  361 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  361 (622)
                        ..++.+-+.............|..+..||||+.|++...+|.|.+|++.+.++......+
T Consensus       211 --~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  211 --RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             --cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence              112222211111122334677889999999999999999999999999988877766543

>KOG1832|consensus

Probab=99.07  E-value=2.9e-10  Score=114.05  Aligned_cols=218  Identities=15%  Similarity=0.205  Sum_probs=154.4

Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCC-cEEEE
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRH-AAVLV  305 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~  305 (622)
                      ..+.++.|....+|++|+.+.++|+.|+..|.|+++++.+|.....+. |.+.++.+.-+.+|..++.+++... ...+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            445677888999999999999999999999999999999999888877 8899999999999997777766655 56789


Q ss_pred             EecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe----cCCCCEEEEEEcCCCCEEEEE
Q psy2110         306 DTDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK----ASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       306 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      ++... .....+..    -.++.|+..-+.-+.|+......+||+.++.++.++-    +....-+...|+|+..+++- 
T Consensus      1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             ccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            98652 33333322    3356777665555666666779999999988766532    12222367889999886653 


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                        ||  .+||++         .+..++.|....-   ...-.|+|.|..++.-+.      |||+++-++++....-.  
T Consensus      1248 --dG--vLWDvR---------~~~aIh~FD~ft~---~~~G~FHP~g~eVIINSE------IwD~RTF~lLh~VP~Ld-- 1303 (1516)
T KOG1832|consen 1248 --DG--VLWDVR---------IPEAIHRFDQFTD---YGGGGFHPSGNEVIINSE------IWDMRTFKLLHSVPSLD-- 1303 (1516)
T ss_pred             --Cc--eeeeec---------cHHHHhhhhhhee---cccccccCCCceEEeech------hhhhHHHHHHhcCcccc--
Confidence              44  479998         3344555543321   112279999999988774      89998877665554322  


Q ss_pred             ceeEEEECCCCCEEE
Q psy2110         461 LLLDVVWHPVRPIIA  475 (622)
Q Consensus       461 ~v~~v~~sp~~~~l~  475 (622)
                       -+.|.|+..|..++
T Consensus      1304 -qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1304 -QCAVTFNSTGDVMY 1317 (1516)
T ss_pred             -ceEEEeccCccchh
Confidence             24456666555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=4.5e-07  Score=80.48  Aligned_cols=220  Identities=15%  Similarity=0.187  Sum_probs=131.9

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCc--ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .++.+.+|++||.- .|..|.|-..++.  ..+.+...+..+.        ..-..++||||+.+||.+...|+|++||+
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~--------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl   72 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN--------PQWRKLAWSPDCTLLAYAESTGTIRVFDL   72 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC--------chheEEEECCCCcEEEEEcCCCeEEEEec
Confidence            45678899888876 4567777655442  1212222211111        13468999999999999999999999998


Q ss_pred             CCCceEEEecc-------CCcCeeEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CcEEEEEe----CCCCeE
Q psy2110         224 LTRGIAKIISA-------HMHPVCSISWSRN------GYKIISASTDNNVCIWDVLT-----GECEQKYR----FPSPIL  281 (622)
Q Consensus       224 ~~~~~~~~~~~-------~~~~v~~~~~s~~------~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~----~~~~v~  281 (622)
                      ... .+..+..       -...|..+.|.+.      ...|++-..+|.++-|-+..     .+....+.    .+..|.
T Consensus        73 ~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~  151 (282)
T PF15492_consen   73 MGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN  151 (282)
T ss_pred             ccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence            653 3333332       2246677777542      12466666788887776532     23334444    467899


Q ss_pred             EEEEeCCCCeEEEEeeCCCc----------EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC------eEE
Q psy2110         282 KVQFHPRNDHMFLVCPMRHA----------AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG------KVL  345 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~----------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~  345 (622)
                      ++.++|..+.+++.|.....          +..|.+-++.                  |..+. ++...++      +..
T Consensus       152 ~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------------Pyyk~-v~~~~~~~~~~~~~~~  212 (282)
T PF15492_consen  152 SAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------------PYYKQ-VTSSEDDITASSKRRG  212 (282)
T ss_pred             EEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC------------------CcEEE-ccccCccccccccccc
Confidence            99999988766655544331          2222222111                  11111 1111111      122


Q ss_pred             EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110         346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                      +|.+.+.+...........|..|..||||+.||+...+|.|.+|++...
T Consensus       213 ~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  213 LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            3333333222222334678999999999999999999999999999843

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.05  E-value=1.7e-08  Score=89.46  Aligned_cols=290  Identities=14%  Similarity=0.222  Sum_probs=175.4

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      ....++++.|...|.||++|.. +|.|.++.-...     +....+++|..+.-     +-..++-...|..+.|..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDk-gGRVvlfer~~s~~ceykf~teFQshe~EFD-----YLkSleieEKin~I~w~~~t~   98 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDK-GGRVVLFEREKSYGCEYKFFTEFQSHELEFD-----YLKSLEIEEKINAIEWFDDTG   98 (460)
T ss_pred             ccceeeEEEeccccceEeecCC-CceEEEeecccccccchhhhhhhcccccchh-----hhhhccHHHHhhheeeecCCC
Confidence            3345678999999999999975 489999875432     22334666665431     111122223445777766543


Q ss_pred             --EEEEeeCCCcEEEEecCCcccccccccccCC----CcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         155 --LLAVGCNDGRIVLWDFLTRGIAKIISAHMHP----EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       155 --~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                        .++..+.|++|++|.+........-......    ...+.+.....+.-...+....++++               .+
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa---------------~p  163 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA---------------KP  163 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe---------------cc
Confidence              4555668899999998765332221111110    01111111111111111111111111               01


Q ss_pred             EEEe-ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-EEe---C-----CCCeEEEEEeCCCCeEEEEeeC
Q psy2110         229 AKII-SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ-KYR---F-----PSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       229 ~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~---~-----~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      .+.. ..|..-|++++|..|...++++. |=.|.+|++.-..... ...   +     ..-|++..|+|....++..++.
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             ceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            1122 46888899999999988888874 6789999987433221 111   1     2357889999999889999999


Q ss_pred             CCcEEEEEecCCc------eeec----------ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc-cEEEEEecC
Q psy2110         299 RHAAVLVDTDGDH------QIVP----------IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL-ELKASFKAS  361 (622)
Q Consensus       299 ~~~i~~~d~~~~~------~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~  361 (622)
                      .|.|++-|++...      .+..          +......|..+.|+++|+++++-.. -++++||.+.. .++.++.-|
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            9999999998431      1111          1112345677899999999987544 47999999864 466666533


Q ss_pred             C------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         362 T------------TAI---KSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       362 ~------------~~i---~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .            ..|   ..+.|+-|.+.+++|+..+..-+|-..
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            1            223   346788888889999887777777643

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.04  E-value=1.7e-07  Score=94.00  Aligned_cols=263  Identities=12%  Similarity=0.068  Sum_probs=152.3

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCCCceEEEec---------------cCCcCee-----EEEEcCCCCEEEEEe-CCCcEEE
Q psy2110         205 RGTLLAVGCN-DGRIVLWDFLTRGIAKIIS---------------AHMHPVC-----SISWSRNGYKIISAS-TDNNVCI  262 (622)
Q Consensus       205 ~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~---------------~~~~~v~-----~~~~s~~~~~l~s~~-~d~~i~i  262 (622)
                      ||++|+.-.. +..|...++...++-+.+.               .++..|.     .+-+++||+.+...+ ..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6788877654 4556666655443322221               1111121     122455666553332 2467888


Q ss_pred             EECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEee---CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe
Q psy2110         263 WDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCP---MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       263 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      .|..+.+...++........+.++|+++++++++.   ....+...+.........+....    ...+.++|++...+ 
T Consensus       220 ID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~----iea~vkdGK~~~V~-  294 (635)
T PRK02888        220 VDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR----IEEAVKAGKFKTIG-  294 (635)
T ss_pred             EECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH----HHHhhhCCCEEEEC-
Confidence            89998888888887778888999999998777762   22233333332222111111110    01334578877763 


Q ss_pred             cCCeEEEEeCCC-----ccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCC-CCCcceeeecc
Q psy2110         340 SKGKVLVLSCPA-----LELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDG-DPEPIQKLQDL  412 (622)
Q Consensus       340 ~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~  412 (622)
                       ++.|.+.|.++     .+.+..+. -......+.++|||+++++++. +.+|.|+|+......-... .++....-+..
T Consensus       295 -gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 -GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             -CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence             56899999988     34455444 3455679999999999988865 8899999998543211000 01110011111


Q ss_pred             ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC----------CeeEEEEecCCCCceeEEE------ECCCCCEEEE
Q psy2110         413 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGELLLDVV------WHPVRPIIAS  476 (622)
Q Consensus       413 ~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~v~~v~------~sp~~~~l~s  476 (622)
                      . ...-...+|.++|....+-.- |..|..||+..          ...+..+.-|..  +-.+.      -.|+|++|++
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~-dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~--pgh~~~~~g~t~~~dgk~l~~  448 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFL-DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ--PGHNHASMGETKEADGKWLVS  448 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEee-cceeEEEehHHHHHHhccccCCcceecccCCCc--cceeeecCCCcCCCCCCEEEE
Confidence            1 111234589999986666665 88999999876          234444544432  22222      3678888887


Q ss_pred             Ee
Q psy2110         477 IS  478 (622)
Q Consensus       477 ~~  478 (622)
                      ..
T Consensus       449 ~n  450 (635)
T PRK02888        449 LN  450 (635)
T ss_pred             cc
Confidence            65

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.04  E-value=7.8e-07  Score=89.30  Aligned_cols=309  Identities=10%  Similarity=0.057  Sum_probs=178.1

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                      +..+++++.+ +.+.-+|..+|+.+.........-.... .......     ..+..  ++..++.++.+|.+..+|..+
T Consensus        69 ~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~~~~~~-----~~~~v--~~~~v~v~~~~g~l~ald~~t  139 (394)
T PRK11138         69 YNKVYAADRA-GLVKALDADTGKEIWSVDLSEKDGWFSK-NKSALLS-----GGVTV--AGGKVYIGSEKGQVYALNAED  139 (394)
T ss_pred             CCEEEEECCC-CeEEEEECCCCcEeeEEcCCCccccccc-ccccccc-----cccEE--ECCEEEEEcCCCEEEEEECCC
Confidence            4556666544 8999999999998877654331100000 0000000     01111  355677788899999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-----eEEEEcCC
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-----CSISWSRN  247 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~  247 (622)
                      |+.+-........           ......  .+..++++..++.+..+|..+|+.+..+......+     .+...  .
T Consensus       140 G~~~W~~~~~~~~-----------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~  204 (394)
T PRK11138        140 GEVAWQTKVAGEA-----------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--A  204 (394)
T ss_pred             CCCcccccCCCce-----------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--E
Confidence            9877665543210           011111  13466778889999999999999888776431111     11111  2


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--------eEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSP--------ILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      +..++.++.++.+..+|..+|+.+.......+        ...+..+|  .+. .+++++.++.+..+|..+++.+....
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~~~W~~~  283 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQIVWKRE  283 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCCEEEeec
Confidence            33577777889999999999987665542111        01111122  133 35556678899999998887665443


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN  396 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~  396 (622)
                      ...  ...  ....+..++.++.+|.+..+|..+++.+-...... ....+...  .+.+|++++.+|.|+++|..+   
T Consensus       284 ~~~--~~~--~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t---  354 (394)
T PRK11138        284 YGS--VND--FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED---  354 (394)
T ss_pred             CCC--ccC--cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC---
Confidence            211  111  12346678888899999999999998765443211 11222222  245688889999999999873   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                            .+.+........ .......+  .+..|+.++. +|.|+.++.
T Consensus       355 ------G~~~~~~~~~~~-~~~s~P~~--~~~~l~v~t~-~G~l~~~~~  393 (394)
T PRK11138        355 ------GRFVAQQKVDSS-GFLSEPVV--ADDKLLIQAR-DGTVYAITR  393 (394)
T ss_pred             ------CCEEEEEEcCCC-cceeCCEE--ECCEEEEEeC-CceEEEEeC
Confidence                  233333321111 10111122  2346667775 888887764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.01  E-value=5.4e-07  Score=83.87  Aligned_cols=219  Identities=19%  Similarity=0.185  Sum_probs=141.8

Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSIS--WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      +|.|..||..+++.+....... ......  ..+++.++++++.++.|..||..+|+.+..+..+..+....... +.. 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~-   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD-GGR-   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE-TTE-
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec-ccc-
Confidence            6889999999999888775311 122222  23356678888899999999999999998888655543332222 333 


Q ss_pred             EEEeeCCCcEEEEEecCCceeecc-cCCC---CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC----
Q psy2110         293 FLVCPMRHAAVLVDTDGDHQIVPI-DEDS---DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA----  364 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----  364 (622)
                      ++++..++.++.+|..+++.+... ....   ...........+..++++..++.|..+|+.+|+.+.........    
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            445556779999998888777663 2221   12233344445888999998999999999999998888764422    


Q ss_pred             ------EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         365 ------IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       365 ------i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                            +.+-....++ .++.++.++.+..+|+.+         .+.+  .......   .......++..|++++. ++
T Consensus       159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~t---------g~~~--w~~~~~~---~~~~~~~~~~~l~~~~~-~~  222 (238)
T PF13360_consen  159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLAT---------GEKL--WSKPISG---IYSLPSVDGGTLYVTSS-DG  222 (238)
T ss_dssp             EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTT---------TEEE--EEECSS----ECECEECCCTEEEEEET-TT
T ss_pred             eeeecccccceEEECC-EEEEEcCCCeEEEEECCC---------CCEE--EEecCCC---ccCCceeeCCEEEEEeC-CC
Confidence                  1222223344 677777777533338773         2211  1111111   11125678888888885 89


Q ss_pred             eEEEEECCCCeeEE
Q psy2110         439 ALYIWEKSVGNLVK  452 (622)
Q Consensus       439 ~i~iwd~~~~~~~~  452 (622)
                      .|+.||+++|+.+-
T Consensus       223 ~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  223 RLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEe
Confidence            99999999998753

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.00  E-value=3.8e-07  Score=84.91  Aligned_cols=221  Identities=16%  Similarity=0.066  Sum_probs=142.1

Q ss_pred             CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccc
Q psy2110         103 QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  182 (622)
Q Consensus       103 ~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  182 (622)
                      +|.|..||..+|+.+.....-.. ..              . ......+++..+++++.++.|..||..+|+.+..+...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~-~~--------------~-~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~   65 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPG-IG--------------G-PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP   65 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSS-CS--------------S-EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS
T ss_pred             CCEEEEEECCCCCEEEEEECCCC-CC--------------C-ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc
Confidence            58999999999999988754211 10              0 01113335667888889999999999999877666542


Q ss_pred             cCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-ccCC---cCeeEEEEcCCCCEEEEEeCCC
Q psy2110         183 MHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SAHM---HPVCSISWSRNGYKIISASTDN  258 (622)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~s~~~d~  258 (622)
                      ....         ..   . ...+..+++++.++.++.+|..+++.+... ....   ..........++..++.+..++
T Consensus        66 ~~~~---------~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   66 GPIS---------GA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             SCGG---------SG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred             cccc---------ce---e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence            2110         01   1 123456677778889999999999998874 3221   1112222333477888998899


Q ss_pred             cEEEEECCCCcEEEEEeCCCCe-----------EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEE
Q psy2110         259 NVCIWDVLTGECEQKYRFPSPI-----------LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVAS  327 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  327 (622)
                      .|..+|+.+|+.+.......+-           ..-....++  .++.+..++.+..+|+.++..+.... ... ... .
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-~~~-~  207 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-IYS-L  207 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTEEEEEEC-SS--ECE-C
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCCEEEEec-CCC-ccC-C
Confidence            9999999999998887643211           122222233  45555555544444998887664333 122 222 2


Q ss_pred             EeeCCCEEEEEecCCeEEEEeCCCccEEEE
Q psy2110         328 FDRRGQHVVTGNSKGKVLVLSCPALELKAS  357 (622)
Q Consensus       328 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  357 (622)
                      ....+..+++++.++.+..||+++++.+.+
T Consensus       208 ~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  208 PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            456778888888999999999999987643

...

>KOG4649|consensus

Probab=99.00  E-value=2.7e-06  Score=74.09  Aligned_cols=188  Identities=14%  Similarity=0.092  Sum_probs=114.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      ..+++.|+..+.+.--|..+|...-.-....      .      +-+-+.- -|++++.|+..|.+++.+.++|...+.+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~------R------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f   89 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------R------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF   89 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc------e------eeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee
Confidence            4577888888889888988887654322211      1      1111111 3678999999999999999999887777


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe-EEEEEeCCCCeEEEEeeCCCcEEEEEecCC-
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPI-LKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-  310 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  310 (622)
                      .....--......+++..|..++.|++.+..|.++..++...+-.+.+ .+.+..|-... ++++...|.+.-...... 
T Consensus        90 ~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~  168 (354)
T KOG4649|consen   90 VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYS  168 (354)
T ss_pred             eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCCC
Confidence            654332234456778999999999999999999999999887754443 34455552332 344444444443333322 


Q ss_pred             -ceeecccCCCCceE-E-EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         311 -HQIVPIDEDSDLSI-V-ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       311 -~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                       ........ ..++. + ++   -+..+..++-||.+.-++ ..|+.+.++.
T Consensus       169 ~~~~w~~~~-~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  169 STEFWAATR-FGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             cceehhhhc-CCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence             11111111 11111 0 11   134555666777777776 5555555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.98  E-value=5.3e-07  Score=90.51  Aligned_cols=271  Identities=11%  Similarity=0.024  Sum_probs=160.0

Q ss_pred             CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCccee----EEEEeecCccccccceeEEEEcCCCCEEEEe-eCCCcE
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELL----LDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRI  165 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i  165 (622)
                      .||+||..-......|-..+++.-++-+.+.-....-.    .......+-+-|... ..+-++|||+.+... -..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e-~~~PlpnDGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGE-FRIPLPNDGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcc-cccccCCCCCEeecccceeEEE
Confidence            47889988765445666666665554443332111100    000001111111111 244556777765433 334667


Q ss_pred             EEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEEcCCCceEEEeccCCcCeeE
Q psy2110         166 VLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLTRGIAKIISAHMHPVCS  241 (622)
Q Consensus       166 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~  241 (622)
                      .+.|..+.+....+....            ....++++++|+++++.+.+    .++...+..+...+..+.-.  .+  
T Consensus       218 SvID~etmeV~~qV~Vdg------------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--  281 (635)
T PRK02888        218 TAVDAETMEVAWQVMVDG------------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--  281 (635)
T ss_pred             EEEECccceEEEEEEeCC------------CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--
Confidence            777877765544443332            12457899999999888642    22333332222222111110  00  


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce----
Q psy2110         242 ISWSRNGYKIISASTDNNVCIWDVLT-----GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ----  312 (622)
Q Consensus       242 ~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----  312 (622)
                      -++.++|++...+  ++.|.+.|..+     .+.+..+..+.....+.++|||+++++++..+..+.++|+.....    
T Consensus       282 ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        282 EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence            1334578876653  57899999998     467777888889999999999999999999999999999987542    


Q ss_pred             --------eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC----------ccEEEEEecCCCCEEEE-----E
Q psy2110         313 --------IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA----------LELKASFKASTTAIKSI-----E  369 (622)
Q Consensus       313 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~i~~~-----~  369 (622)
                              ...... .......+|+++|..+.+-.-|..|..|++..          ...+..+..|..+..-.     .
T Consensus       360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t  438 (635)
T PRK02888        360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGET  438 (635)
T ss_pred             cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCc
Confidence                    122222 22233568899998888888899999999875          23444455443332111     2


Q ss_pred             EcCCCCEEEEEe
Q psy2110         370 FARRGNCLLVNT  381 (622)
Q Consensus       370 ~s~~~~~l~~~~  381 (622)
                      -.|+|++|++..
T Consensus       439 ~~~dgk~l~~~n  450 (635)
T PRK02888        439 KEADGKWLVSLN  450 (635)
T ss_pred             CCCCCCEEEEcc
Confidence            257788877764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.98  E-value=1.2e-06  Score=83.00  Aligned_cols=308  Identities=14%  Similarity=0.112  Sum_probs=149.5

Q ss_pred             EcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CC--cEEEEecCCcccccccccccCCC
Q psy2110         110 EKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DG--RIVLWDFLTRGIAKIISAHMHPE  186 (622)
Q Consensus       110 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~  186 (622)
                      |..||..+.+|..+...-.            ...-+.=+|.+||+.|+.++. ||  .+.+.|+.+++..+.-.+.... 
T Consensus        16 D~~TG~~VtrLT~~~~~~h------------~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~-   82 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSH------------RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN-   82 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---------------TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--
T ss_pred             CCCCCceEEEecCCCCccc------------ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC-
Confidence            6677877777765544221            000123467889986666554 44  5666688888665544433211 


Q ss_pred             cccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc--CCCCEEEEEeC--------
Q psy2110         187 FDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS--RNGYKIISAST--------  256 (622)
Q Consensus       187 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~--------  256 (622)
                                .....++|+.+.++.......++-.|+.+.+....+......+-...|.  .|+..++-.-.        
T Consensus        83 ----------~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l  152 (386)
T PF14583_consen   83 ----------TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPL  152 (386)
T ss_dssp             ----------TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG----
T ss_pred             ----------ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCc
Confidence                      1124567888888777667789999999988766666555555545553  46666543211        


Q ss_pred             --------------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---C-cEEEEEecCC-ceeeccc
Q psy2110         257 --------------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---H-AAVLVDTDGD-HQIVPID  317 (622)
Q Consensus       257 --------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~-~i~~~d~~~~-~~~~~~~  317 (622)
                                    ...|.-.|+.+|+....+.-...+..+.|+|..+.+++.|-..   . .-++|-++.. .....+.
T Consensus       153 ~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~  232 (386)
T PF14583_consen  153 TKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH  232 (386)
T ss_dssp             -SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred             cccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence                          1236777889999888888888899999999999888887432   2 1355655432 1122222


Q ss_pred             C--CCCceEEEEEeeCCCEEEEEe-----cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC------
Q psy2110         318 E--DSDLSIVASFDRRGQHVVTGN-----SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR------  384 (622)
Q Consensus       318 ~--~~~~~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~------  384 (622)
                      .  ....+..=-|.++|..|.--+     .+..|.-+|+.+++.......  .....+..++||++++--+.|.      
T Consensus       233 ~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~  310 (386)
T PF14583_consen  233 RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVAD  310 (386)
T ss_dssp             ---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---------
T ss_pred             cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccc
Confidence            2  233344456889998765422     234577788888765443332  2344666688999776544432      


Q ss_pred             ----------cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         385 ----------LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       385 ----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                                .|+++++.................+.+.... .=....|||||++|+..+...|...||
T Consensus       311 ~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~-~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  311 AGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV-THPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ----------EEEEEETTTTEEEEEEE-------BTTBSST-T----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             cccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc-CCCCCccCCCCCEEEEECCCCCCccEE
Confidence                      3455665421100000000000001100000 012459999999999888766665555

>KOG4190|consensus

Probab=98.97  E-value=4.2e-09  Score=100.37  Aligned_cols=275  Identities=13%  Similarity=0.097  Sum_probs=173.8

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCc-------ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTR-------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                      +.++--.+.+-+++++.|++|++|.+...       .+..+++.|..           .|..+.|-.+.++++++  ||.
T Consensus       739 Rai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----------~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  739 RAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----------PIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             HHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----------cccceeeeeccceeeec--cCc
Confidence            35554556778999999999999988642       24444555543           36778888888877655  789


Q ss_pred             EEEEEcCCCceEEEec--cCCcCeeEEEEcC--CCCEEEEE-eCCCcEEEEECCCCcEEEEEe------CCCCeEEEEEe
Q psy2110         218 IVLWDFLTRGIAKIIS--AHMHPVCSISWSR--NGYKIISA-STDNNVCIWDVLTGECEQKYR------FPSPILKVQFH  286 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~--~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~  286 (622)
                      |.+||.--++.+..+.  ...+.+..+..-+  +...++.+ +...+|+++|.+..+....++      ...-+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987766654332  1123333333333  33344444 667899999999988777665      12457889999


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEE-EeCCCccEEEEEecCCCCE
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV-LSCPALELKASFKASTTAI  365 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~i  365 (622)
                      +.|++ ++++-.+|.+.+.|.+++..+..+....-....++ .|..+.++....|.++.+ |....+....+.+....+.
T Consensus       886 ~~GN~-lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  886 DKGNK-LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             cCcch-hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence            98885 66777899999999999987776655443333332 355567777778888888 8877776655555443332


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEE
Q psy2110         366 KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYI  442 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~i  442 (622)
                      .-+  ..-|..|+++.....+.+|.-.....     ....+.+++...-....++++.-|-+.-+.+|.. .|.|.+
T Consensus       964 hfl--qsvgpSLV~a~~Gn~lgVYad~a~~h-----a~stitKiR~d~f~G~lTala~LPLN~afLaGne-~G~IaL 1032 (1034)
T KOG4190|consen  964 HFL--QSVGPSLVTAQNGNILGVYADSAELH-----AESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE-HGAIAL 1032 (1034)
T ss_pred             hhh--hccCceeEEeccCcEEEEEecchhhh-----hhhhhccccccccCCccceeeeccccchhhccCC-CCceee
Confidence            211  22356688888777888885431100     1112223332222333455666666655556665 666654

>KOG3914|consensus

Probab=98.96  E-value=1.9e-08  Score=92.72  Aligned_cols=158  Identities=16%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCc----eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGN----LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      .+..+|.+++||.+... ....+++.....    +...+.....+                  +++.|..+......+..
T Consensus        67 ~~~~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~------------------~ai~~~~~~~sv~v~dk  127 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRP------------------TAISFIREDTSVLVADK  127 (390)
T ss_pred             ccccCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCc------------------ceeeeeeccceEEEEee
Confidence            35778889999888765 455555554322    22222222222                  35666665555554443


Q ss_pred             ---CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-ccCCc
Q psy2110         162 ---DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SAHMH  237 (622)
Q Consensus       162 ---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~  237 (622)
                         ...+.+|....+.... +-+|.           +.++.++++||+++++++..|..|++-....--.+..+ -||+.
T Consensus       128 agD~~~~di~s~~~~~~~~-~lGhv-----------Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e  195 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRCEP-ILGHV-----------SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE  195 (390)
T ss_pred             cCCceeeeeecccccCcch-hhhhh-----------hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh
Confidence               4445555554433322 22332           56899999999999999999999999877655444444 47999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .|..++.-++ ..|++++.|++|++||+.+|+++.++.
T Consensus       196 FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             heeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence            9999999764 469999999999999999999987766

>KOG0882|consensus

Probab=98.94  E-value=1.8e-08  Score=93.94  Aligned_cols=250  Identities=17%  Similarity=0.191  Sum_probs=175.9

Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC---CceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCCC
Q psy2110         203 NKRGTLLAVGCNDGRIVLWDFLT---RGIAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFPS  278 (622)
Q Consensus       203 s~~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~  278 (622)
                      ..-.+++.+++.||.++.|.-..   -+.+..+..|...|.+++.+-++..+.+.+. |..++++|+.+-..+..++...
T Consensus        17 ~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~   96 (558)
T KOG0882|consen   17 PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD   96 (558)
T ss_pred             eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence            33457899999999999997543   1344566789999999999999999999777 9999999998776665555333


Q ss_pred             CeEEEEEeCCCC----eEEEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC-
Q psy2110         279 PILKVQFHPRND----HMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA-  351 (622)
Q Consensus       279 ~v~~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  351 (622)
                      ....+.|.....    .+.+....++.+.++|-....  .......|...+..+.+.+.+..+++....|.|.-|.... 
T Consensus        97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~  176 (558)
T KOG0882|consen   97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP  176 (558)
T ss_pred             CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence            333333322221    345555678889999987653  3445566889999999999999999999999999998762 


Q ss_pred             -----ccEE---------EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC-----------CCCcc
Q psy2110         352 -----LELK---------ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG-----------DPEPI  406 (622)
Q Consensus       352 -----~~~~---------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----------~~~~~  406 (622)
                           .+..         ..+........++.|+|++..+.+-+.|..|+++..........-.           .+..+
T Consensus       177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l  256 (558)
T KOG0882|consen  177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL  256 (558)
T ss_pred             ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence                 1111         1122334567899999999999999999999999987532221100           00000


Q ss_pred             e------------eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         407 Q------------KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       407 ~------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      .            .+.. .+......++|...|++|+.++. = -|++.++.++.+++.+-
T Consensus       257 ~~VelgRRmaverelek-~~~~~~~~~~fdes~~flly~t~-~-gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  257 MHVELGRRMAVERELEK-HGSTVGTNAVFDESGNFLLYGTI-L-GIKVINLDTNTVVRILG  314 (558)
T ss_pred             ceeehhhhhhHHhhHhh-hcCcccceeEEcCCCCEEEeecc-e-eEEEEEeecCeEEEEec
Confidence            0            0111 12223356799999999999986 4 39999999998877764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.94  E-value=1.3e-06  Score=86.03  Aligned_cols=322  Identities=12%  Similarity=0.114  Sum_probs=170.2

Q ss_pred             ccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEE
Q psy2110          10 DRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF   89 (622)
Q Consensus        10 spdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (622)
                      |||+++++....  .-+.|.-                +..+.+.++|+.+...          ..+...  ........|
T Consensus         1 S~d~~~~l~~~~--~~~~~r~----------------s~~~~y~i~d~~~~~~----------~~l~~~--~~~~~~~~~   50 (353)
T PF00930_consen    1 SPDGKFVLFATN--YTKQWRH----------------SFKGDYYIYDIETGEI----------TPLTPP--PPKLQDAKW   50 (353)
T ss_dssp             -TTSSEEEEEEE--EEEESSS----------------EEEEEEEEEETTTTEE----------EESS-E--ETTBSEEEE
T ss_pred             CCCCCeEEEEEC--cEEeeee----------------ccceeEEEEecCCCce----------EECcCC--cccccccee
Confidence            789998887543  4445542                1234566677654221          111111  233456899


Q ss_pred             cCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-CcEEEE
Q psy2110          90 SGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLW  168 (622)
Q Consensus        90 sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~vw  168 (622)
                      ||+|+++|...  ++.|++++..+++..+.-..-...+.-.....-...+-...-..+-||||+++||....| ..|+.+
T Consensus        51 sP~g~~~~~v~--~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   51 SPDGKYIAFVR--DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             -SSSTEEEEEE--TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ecCCCeeEEEe--cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            99999999997  378999998877544322211222221110000000001112478999999999877543 445555


Q ss_pred             ecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE-E-e---ccCCcCeeEEE
Q psy2110         169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-I-I---SAHMHPVCSIS  243 (622)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-~-~---~~~~~~v~~~~  243 (622)
                      .+........   ..           ..+..+.+-.-|.-...    -.+.++++.+++... . .   ..-...+..+.
T Consensus       129 ~~~~~~~~~~---~y-----------p~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~  190 (353)
T PF00930_consen  129 PLPDYSPPDS---QY-----------PEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVG  190 (353)
T ss_dssp             EEEEESSSTE---SS------------EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEE
T ss_pred             EeeccCCccc---cC-----------CcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccce
Confidence            4332111000   00           01334444333322211    246678887776532 1 1   23456788999


Q ss_pred             EcCCCCEEEEEe--CCC---cEEEEECCCCcEEEEEe--CCC---CeEEEEEe-CCCCeEEEEeeCCCcEEEEEe--cCC
Q psy2110         244 WSRNGYKIISAS--TDN---NVCIWDVLTGECEQKYR--FPS---PILKVQFH-PRNDHMFLVCPMRHAAVLVDT--DGD  310 (622)
Q Consensus       244 ~s~~~~~l~s~~--~d~---~i~iwd~~~~~~~~~~~--~~~---~v~~~~~~-~~~~~~~~~~~~~~~i~~~d~--~~~  310 (622)
                      |.++++.|+..-  .+.   .+.+.|..++++.....  ...   ......+. +++..++.....+|.-.|+-.  .++
T Consensus       191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            999998454433  222   47778888776554443  222   22355555 888888888878886555544  444


Q ss_pred             ceeecccCCCCce-EEEEEeeCCCEEE-EEecC----CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q psy2110         311 HQIVPIDEDSDLS-IVASFDRRGQHVV-TGNSK----GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       311 ~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      .. ..+....-.| ..+.++++++.|+ ++..+    ..++..++..+..+..+.........+.|||++++++..+.
T Consensus       271 ~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  271 KP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            43 3444444445 4577888877665 44442    25666677733445555544443368999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.92  E-value=6.9e-07  Score=88.44  Aligned_cols=238  Identities=14%  Similarity=0.199  Sum_probs=147.6

Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---C-CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---D-NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH  291 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  291 (622)
                      ..+.+-|.+ +...+.+......+...+|+|+++.++....   . ..+.++++.+++........+.-...+|+|||+.
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence            334444443 5555566656677888899999987765532   2 3699999999998888888888888899999999


Q ss_pred             EEEEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--eEEEEeCCCccEEEEEecCCCCEE
Q psy2110         292 MFLVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--KVLVLSCPALELKASFKASTTAIK  366 (622)
Q Consensus       292 ~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~  366 (622)
                      ++++...++.  ++++|+.+.... .+....+....-.|+|+|+.++..+.. |  .|.+++...... ..+......-.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence            9999888876  556677665533 344444444577899999998876543 3  577777776654 33333323223


Q ss_pred             EEEEcCCCCEEEEEeCC-Cc--EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         367 SIEFARRGNCLLVNTGD-RL--IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      ...|+|||++|+..+.. |.  |.+.++..        . ..++.+...   .....-+|.++|+.+...+...+.=.++
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~--------~-~~~~~lt~~---~~~e~ps~~~ng~~i~~~s~~~~~~~l~  397 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLAS--------G-GKIRILTST---YLNESPSWAPNGRMIMFSSGQGGGSVLS  397 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccCC--------C-CcEEEcccc---ccCCCCCcCCCCceEEEeccCCCCceEE
Confidence            77899999999988753 44  55555542        1 112222211   1112348899999887765422111222


Q ss_pred             E-CCCCeeEEEEecCCCCceeEEEECC
Q psy2110         444 E-KSVGNLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       444 d-~~~~~~~~~~~~~~~~~v~~v~~sp  469 (622)
                      . ..+++..+.+....+. +...+|+|
T Consensus       398 ~~s~~g~~~~~~~~~~~~-~~~p~w~~  423 (425)
T COG0823         398 LVSLDGRVSRPLPLADGD-VRVPAWSP  423 (425)
T ss_pred             EeeccceeEEEEeccCcc-eecccccC
Confidence            2 2234444344433333 45555554

>KOG4649|consensus

Probab=98.91  E-value=1.5e-05  Score=69.59  Aligned_cols=148  Identities=18%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             cCCCC-EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEE
Q psy2110          90 SGDGE-YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  168 (622)
Q Consensus        90 sp~~~-~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw  168 (622)
                      -+|.+ +++.|+. .+.+.--|..+|+....-... ..+           +|    ..+.   -|.+++.|...|.+++.
T Consensus        19 ~~dskT~v~igSH-s~~~~avd~~sG~~~We~ilg-~Ri-----------E~----sa~v---vgdfVV~GCy~g~lYfl   78 (354)
T KOG4649|consen   19 CNDSKTLVVIGSH-SGIVIAVDPQSGNLIWEAILG-VRI-----------EC----SAIV---VGDFVVLGCYSGGLYFL   78 (354)
T ss_pred             ecCCceEEEEecC-CceEEEecCCCCcEEeehhhC-cee-----------ee----eeEE---ECCEEEEEEccCcEEEE
Confidence            34444 4555665 478888899999887542211 111           00    0111   36789999999999999


Q ss_pred             ecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCC
Q psy2110         169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNG  248 (622)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  248 (622)
                      +..+|.....+.....-           -......+++.++..|+.|++.+..|..+..++...+...+...+.+..+-.
T Consensus        79 ~~~tGs~~w~f~~~~~v-----------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~  147 (354)
T KOG4649|consen   79 CVKTGSQIWNFVILETV-----------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD  147 (354)
T ss_pred             Eecchhheeeeeehhhh-----------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCC
Confidence            99999777666543211           1234567889999999999999999999999998887766655666777733


Q ss_pred             CEEEEEeCCCcEEEEECCCC
Q psy2110         249 YKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       249 ~~l~s~~~d~~i~iwd~~~~  268 (622)
                      ..|+.+...|.+.--..+.+
T Consensus       148 ~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  148 GSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceEEEEeccceEEEEccCCC
Confidence            34555555666555554444

>KOG1645|consensus

Probab=98.88  E-value=2.1e-07  Score=85.88  Aligned_cols=258  Identities=14%  Similarity=0.098  Sum_probs=159.2

Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEe
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      +++.+-.+.+....+..|...|..++|||..+ ++..++.+..|.|.|+++..+...+.....+.+++|.-+..+.+++|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            56666555555667778889999999999766 78889999999999999999999999889999999999999999999


Q ss_pred             eCCCcEEEEEecCCce-eecccC--CCCceEEEE------EeeCCCEEEEEecCCeEEEEeCCC--ccEEEEEe-cCCCC
Q psy2110         297 PMRHAAVLVDTDGDHQ-IVPIDE--DSDLSIVAS------FDRRGQHVVTGNSKGKVLVLSCPA--LELKASFK-ASTTA  364 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~-~~~~~~--~~~~~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~-~~~~~  364 (622)
                      ..+|.|.+||++.... +..+..  ....+..++      ..+.|.+++....+  +..|++..  +.....++ ...+.
T Consensus       255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence            9999999999986532 222211  122222222      22334444444332  45565432  12222222 22455


Q ss_pred             EEEEEEcCCCCEEEEEeCC-------CcEEEEecccccccCCCCCCCcceeeeccc-c----ceee-eeEEEcCCCCeEE
Q psy2110         365 IKSIEFARRGNCLLVNTGD-------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-N----KTMW-KKCCFSGDGEYVC  431 (622)
Q Consensus       365 i~~~~~s~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~-~~~~~spdg~~l~  431 (622)
                      ..++++.+..+.++.....       ..|-. ...     ...|  .++...+... +    ...- ..+.-.++..+|+
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~-~~d-----~~dG--~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv  404 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILG-RID-----FRDG--FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV  404 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeee-eec-----cccC--ceeeeecccccCCcccccccccceeccccccEEE
Confidence            6667776655555444321       11111 000     0001  1111111000 0    0000 1123345667777


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC--CCEEEEEeCCcEEEeec
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV--RPIIASISSGVVSLWAQ  487 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~dg~v~iw~~  487 (622)
                      .-+.+.+.+.+||..+++.++.+.-.  .+|.++.....  +.+|+.-.|..++|+..
T Consensus       405 ~~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  405 VVGDSTNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             EecCCcceeEEeccchhheeeecccC--cceeecceeecCCcchhhheecceEEEEec
Confidence            65555788999999999999988765  45888766443  34787777888888865

>KOG2695|consensus

Probab=98.88  E-value=1.1e-08  Score=92.06  Aligned_cols=166  Identities=11%  Similarity=0.146  Sum_probs=123.7

Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc----cEEEEEe
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELKASFK  359 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~  359 (622)
                      +|+-+-...-++.+.+..+-+.++.++....-.  ....|.++.|...+.++..|+.+|.|..+|++.+    .....--
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            454332223345566677888888876543322  4555677788888899999999999999999865    2222333


Q ss_pred             cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         360 ASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       360 ~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                      -|...|+++..-. ++++|++.+.+|+|++||++..+      ....++.+.+|.+.....-+-..+....|++++. |.
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd-Dc  368 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD-DC  368 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh------cccceeeeecccccccccccccccccceEEEccC-ee
Confidence            5788899988776 78899999999999999998422      1234788888888776666677888888888875 99


Q ss_pred             eEEEEECCCCeeEEEEecCC
Q psy2110         439 ALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       439 ~i~iwd~~~~~~~~~~~~~~  458 (622)
                      ..+||.++.|.++..+.-..
T Consensus       369 ytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             EEEEEecccCceeeccCCCC
Confidence            99999999999998887654

>KOG3914|consensus

Probab=98.87  E-value=6.1e-08  Score=89.44  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=112.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCeEEEEEeCCCCeEEEEe--eCCCcEEEEEecCCce
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGE----CEQKYRFPSPILKVQFHPRNDHMFLVC--PMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~  312 (622)
                      ...+..++.++++|.+..+....++++....    +......+....++.+..+....+++-  +....+.+|.... .+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC
Confidence            3445567788888888877777677665433    333444555556666666555444332  2333444444444 55


Q ss_pred             eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         313 IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      ...+.+|-..++.++++||+++|+++..|..|++-.......+..+- +|..-|..++.-++. .|++++.|++|++||+
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEec
Confidence            66677888999999999999999999999999998888766666665 699999999998764 4899999999999999


Q ss_pred             ccccc
Q psy2110         392 QEVLN  396 (622)
Q Consensus       392 ~~~~~  396 (622)
                      .....
T Consensus       223 ~sgk~  227 (390)
T KOG3914|consen  223 TSGKL  227 (390)
T ss_pred             ccCCc
Confidence            95433

>KOG1920|consensus

Probab=98.85  E-value=4.7e-05  Score=80.75  Aligned_cols=151  Identities=15%  Similarity=0.226  Sum_probs=97.8

Q ss_pred             eEEEEcCCCCEEEEe-----eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe---CCC
Q psy2110         145 VTCAFNKRGTLLAVG-----CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC---NDG  216 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg  216 (622)
                      +++.|--||+++|+.     .....|+|||-+ |.+...-....           ..-.+++|-|.|..+++-.   .++
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~-----------~l~~~LsWkPsgs~iA~iq~~~sd~  266 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE-----------GLQHSLSWKPSGSLIAAIQCKTSDS  266 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc-----------ccccceeecCCCCeEeeeeecCCCC
Confidence            479999999999983     233789999977 43222111111           1235789999999988753   356


Q ss_pred             eEEEEEcCC---CceEEEeccCCcCeeEEEEcCCCCEEEE---EeCCCcEEEEECCCCcEE--EEEeCCCCeEEEEEeCC
Q psy2110         217 RIVLWDFLT---RGIAKIISAHMHPVCSISWSRNGYKIIS---ASTDNNVCIWDVLTGECE--QKYRFPSPILKVQFHPR  288 (622)
Q Consensus       217 ~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s---~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~  288 (622)
                      .|.+|.-+.   +.....+......+..++|+.++..|+.   ......|++|-+.+....  +.+..+.... +.|+|.
T Consensus       267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~  345 (1265)
T KOG1920|consen  267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPV  345 (1265)
T ss_pred             cEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCC
Confidence            788887432   1122222333345899999999998887   444445999988766532  3334444433 899997


Q ss_pred             CCeEEEEeeCCCcEEEEEec
Q psy2110         289 NDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ..+-+.+...+|...+++..
T Consensus       346 ~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  346 TEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             CceeEEEEecCCcEEEEEEE
Confidence            76666666677777776653

>KOG3617|consensus

Probab=98.84  E-value=2.9e-07  Score=92.66  Aligned_cols=306  Identities=14%  Similarity=0.144  Sum_probs=179.0

Q ss_pred             EEEEcCCCCEEEEeeC----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         146 TCAFNKRGTLLAVGCN----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                      -..|+|...++|+++.    .|.|.||- ++|+.......+.            .+++++|+|..-.|+.|-.-|.+.+|
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~------------hatSLCWHpe~~vLa~gwe~g~~~v~   86 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV------------HATSLCWHPEEFVLAQGWEMGVSDVQ   86 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce------------ehhhhccChHHHHHhhccccceeEEE
Confidence            4578999988888764    47788873 4555444333322            35789999998899999889999999


Q ss_pred             EcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE---eC--CCC--eEEEEEeCCCCeE--
Q psy2110         222 DFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY---RF--PSP--ILKVQFHPRNDHM--  292 (622)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~--~~~--v~~~~~~~~~~~~--  292 (622)
                      ...+.+.......|..+|..+.||++|..++++..-|.|.+|....-..++..   .|  ...  ..+..+++++..+  
T Consensus        87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~  166 (1416)
T KOG3617|consen   87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFK  166 (1416)
T ss_pred             ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhh
Confidence            98887777777789999999999999999999999999999987633222221   12  222  2334445553221  


Q ss_pred             ---EEEeeCCCcEE-EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         293 ---FLVCPMRHAAV-LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       293 ---~~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                         +++.+++..+- .++.+........        .-.-.|+|..++.++.+|+|+-.|- +++.....+..+.  ..+
T Consensus       167 laKaaVtgDe~alD~~fnwk~~~a~rs~--------~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--vQm  235 (1416)
T KOG3617|consen  167 LAKAAVTGDESALDEPFNWKESLAERSD--------EKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--VQM  235 (1416)
T ss_pred             hhhhhccCchhhhcccccCccchhhccc--------cccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--HHH
Confidence               22233332221 2222111000000        0112467888888899998887773 4554444332211  233


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccc-c------------cccCCC---------CCCCcceeeeccccceeeeeEEEcCC
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQE-V------------LNAGKD---------GDPEPIQKLQDLVNKTMWKKCCFSGD  426 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~~-~------------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~spd  426 (622)
                      -|.+....+++...+-++.++-... +            ...+..         |-..+..+ .+......+.++|++..
T Consensus       236 Lf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eK-yg~e~ge~~~c~cY~~~  314 (1416)
T KOG3617|consen  236 LFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEK-YGLELGEGILCMCYGEK  314 (1416)
T ss_pred             HHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcc-hhhhcCCceEEEEEecc
Confidence            3444333333333333333332210 0            000000         00001111 12334556789999999


Q ss_pred             CCeEEEeeCCCCeEEEEECCC----C---eeEEEEecCC---CCceeEEEECCCCCEEEEEe
Q psy2110         427 GEYVCAGSARQHALYIWEKSV----G---NLVKILHGTK---GELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~~----~---~~~~~~~~~~---~~~v~~v~~sp~~~~l~s~~  478 (622)
                      +..|+.|.. .|.+++|--..    |   .-.-.+.+..   +. |+.+.|.|-.+.++.-+
T Consensus       315 ~~~l~agt~-~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~-I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  315 EIRLWAGTK-EGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGK-ISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             ceEEEeccc-CCcEEEeeecCccccCCCCcceEEecCchhhccc-eEEEEeccccchhhhhh
Confidence            999999886 89999995322    1   2233344432   34 99999999766555444

>KOG4714|consensus

Probab=98.80  E-value=4.7e-07  Score=78.65  Aligned_cols=149  Identities=13%  Similarity=0.125  Sum_probs=99.3

Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCCc-eEEEeccCCcCeeEEEEcCCCCEEEEEeC-----CCcEEEEECCCCcEEEE-Ee
Q psy2110         203 NKRGTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPVCSISWSRNGYKIISAST-----DNNVCIWDVLTGECEQK-YR  275 (622)
Q Consensus       203 s~~g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~-~~  275 (622)
                      +--++.++++..||.+.+++.+... ..+.+..-...-.+.+....++.+.++.-     -+..++|+++..+.... ..
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence            3345678999999999999876521 11111111111122233334554444321     23456666653332211 11


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-eeecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCC
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QIVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      ....|.+++-+|...+++++|+.+|.+.+||.++.. +...+..|...+..+-|+| ++..|+++++||.+..||..+
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            234499999999999999999999999999998763 4455677889999999998 568999999999999999764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.77  E-value=1.5e-05  Score=74.18  Aligned_cols=206  Identities=13%  Similarity=0.156  Sum_probs=129.0

Q ss_pred             EEEEcCCCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEEEEeeCCC
Q psy2110          86 KCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLLAVGCNDG  163 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg  163 (622)
                      ..++|.||+++++.-. -..+|.|-|+..++.+..+....                     |...-|. ...+.+-|.||
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---------------------C~~iyP~~~~~F~~lC~DG  157 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---------------------CWLIYPSGNRGFSMLCGDG  157 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---------------------EEEEEEEETTEEEEEETTS
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---------------------EEEEEecCCCceEEEecCC
Confidence            3689999999887532 23689999999999888776543                     2222232 24577888899


Q ss_pred             cEEEEecCC-cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE--EEecc------
Q psy2110         164 RIVLWDFLT-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA--KIISA------  234 (622)
Q Consensus       164 ~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~--~~~~~------  234 (622)
                      .+.-..+.. |+...+.........+      .....-++...+..++.-+.+|.|+-.|+......  ..+.-      
T Consensus       158 sl~~v~Ld~~Gk~~~~~t~~F~~~~d------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~  231 (342)
T PF06433_consen  158 SLLTVTLDADGKEAQKSTKVFDPDDD------PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK  231 (342)
T ss_dssp             CEEEEEETSTSSEEEEEEEESSTTTS-------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred             ceEEEEECCCCCEeEeeccccCCCCc------ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence            999998874 4443222111111111      01223355556666666778999999888765422  12211      


Q ss_pred             ----CCcCeeEEEEcCCCCEEEEEeC---CC-------cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE-eeCC
Q psy2110         235 ----HMHPVCSISWSRNGYKIISAST---DN-------NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV-CPMR  299 (622)
Q Consensus       235 ----~~~~v~~~~~s~~~~~l~s~~~---d~-------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~  299 (622)
                          ..+.-.-+++++..++|+..-.   ++       .|.++|+.+++.+..+....++.+++.+.+.+-+|++ ...+
T Consensus       232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~  311 (342)
T PF06433_consen  232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD  311 (342)
T ss_dssp             HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT
T ss_pred             ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC
Confidence                0123445777776655554321   11       4899999999999999988889999999988766655 4567


Q ss_pred             CcEEEEEecCCceeecccC
Q psy2110         300 HAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~  318 (622)
                      +.+.++|..+++.+..+..
T Consensus       312 ~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  312 GTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             TEEEEEETTT--EEEEE--
T ss_pred             CeEEEEeCcCCcEEeehhc
Confidence            8999999999887776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882|consensus

Probab=98.76  E-value=7.2e-07  Score=83.53  Aligned_cols=242  Identities=19%  Similarity=0.245  Sum_probs=169.8

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCC---CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CC
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSV---GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DG  163 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg  163 (622)
                      +|-.-.+++.+++.| |.++.|.-..   -+.+..++.|...+.                 +++.+-++.++.|.+. |.
T Consensus        15 v~~tka~fiiqASlD-Gh~KFWkKs~isGvEfVKhFraHL~~I~-----------------sl~~S~dg~L~~Sv~d~Dh   76 (558)
T KOG0882|consen   15 VFPTKAKFIIQASLD-GHKKFWKKSRISGVEFVKHFRAHLGVIL-----------------SLAVSYDGWLFRSVEDPDH   76 (558)
T ss_pred             EeeehhheEEeeecc-hhhhhcCCCCccceeehhhhHHHHHHHH-----------------hhhccccceeEeeccCccc
Confidence            344456889999986 9999997543   234556777877774                 8899999999999777 99


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC--CEEEEE-eCCCeEEEEEcCCCc--eEEEeccCCcC
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVG-CNDGRIVLWDFLTRG--IAKIISAHMHP  238 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~  238 (622)
                      .++++|+++-.....+.....+..          .++..++..  ..++++ -.++.+.++|-....  ....-.-|..+
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~----------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP  146 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGF----------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP  146 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCc----------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence            999999998777766655544421          122223321  133333 457889999865443  22334468999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEEe----------CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLT------GECEQKYR----------FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      |..+.+++.+..+++....|.|.-|....      .+....+.          ......++.|+|++..+ ..-..|..|
T Consensus       147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi-stl~~DrkV  225 (558)
T KOG0882|consen  147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI-STLNPDRKV  225 (558)
T ss_pred             eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcc-cccCcccEE
Confidence            99999999999999999899999998762      11111111          23567899999999854 444589999


Q ss_pred             EEEEecCCceeecccC--------------------------------C-CCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         303 VLVDTDGDHQIVPIDE--------------------------------D-SDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~--------------------------------~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ++++..++..++.+..                                + ...-+.+.|+..|++|+-|+-=| |++.++
T Consensus       226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~  304 (558)
T KOG0882|consen  226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL  304 (558)
T ss_pred             EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe
Confidence            9999988754433221                                1 11234578899999999988877 899999


Q ss_pred             CCccEEEEEe
Q psy2110         350 PALELKASFK  359 (622)
Q Consensus       350 ~~~~~~~~~~  359 (622)
                      .++.+.+.+-
T Consensus       305 ~tn~v~ri~g  314 (558)
T KOG0882|consen  305 DTNTVVRILG  314 (558)
T ss_pred             ecCeEEEEec
Confidence            9888776653

>KOG1275|consensus

Probab=98.74  E-value=1.6e-07  Score=95.41  Aligned_cols=183  Identities=15%  Similarity=0.168  Sum_probs=143.6

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      ++..++.|+....+..+|+.+.+..+.......           .|.-+.  .+++++.+|...|+|.+-|..+.+.+++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----------~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht  212 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----------GVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHT  212 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC-----------ceEEEE--ecCcEEEeecccceEEeecCCcCceeee
Confidence            455677777777888889888766555443321           233333  4578999999999999999999999999


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeC---------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISAST---------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      +.+|.+.|..+..  .|+.|++++.         |..|+|||++..+.+.-+.++....-+.|+|.-...+++++..|..
T Consensus       213 ~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~  290 (1118)
T KOG1275|consen  213 FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQF  290 (1118)
T ss_pred             eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccce
Confidence            9999999987665  6889998875         4458999999888887777666667788999888889999999999


Q ss_pred             EEEE---ecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         303 VLVD---TDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       303 ~~~d---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      .+.|   +.+. ..+..+......+..+.++++|+.++.|..+|.|.+|.-
T Consensus       291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            9999   4443 233444445566889999999999999999999999973

>KOG1920|consensus

Probab=98.70  E-value=2.2e-05  Score=83.20  Aligned_cols=280  Identities=13%  Similarity=0.146  Sum_probs=157.0

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...+.++.|--++..++.+... |.|.+-|..+....-.-. -...|                 .+++||||+..++..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~-vd~GI-----------------~aaswS~Dee~l~liT  128 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITAL-GDIILVDPETLELEIVGN-VDNGI-----------------SAASWSPDEELLALIT  128 (1265)
T ss_pred             CcceEEEEEecccceEEEEecC-CcEEEEcccccceeeeee-ccCce-----------------EEEeecCCCcEEEEEe
Confidence            3456788888888888887765 888888877654432222 22233                 5999999999999988


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-EEEeccCCcCe
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-AKIISAHMHPV  239 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v  239 (622)
                      ..+++.+-. .+...+.....+...      ...+....+-|-...+.+ -|+ .|.....+...... .....-+ ..=
T Consensus       129 ~~~tll~mT-~~f~~i~E~~L~~d~------~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~-~~~  198 (1265)
T KOG1920|consen  129 GRQTLLFMT-KDFEPIAEKPLDADD------ERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQD-DHK  198 (1265)
T ss_pred             CCcEEEEEe-ccccchhcccccccc------ccccccceecccccceee-ecc-hhhhcccccccccccccchhhc-cCC
Confidence            877776543 222222211111000      000112233333322222 111 12211111111100 0111112 223


Q ss_pred             eEEEEcCCCCEEEEEe----CC-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEe--eCCCcEEEEEecCC-
Q psy2110         240 CSISWSRNGYKIISAS----TD-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVC--PMRHAAVLVDTDGD-  310 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~----~d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~-  310 (622)
                      +++.|--||.++++..    .+ +.|++||.+ |..-..-. ...--.+++|-|.|..+.+..  +.++.|.++..++- 
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            5789999999998843    23 789999976 43322222 233446789999887555543  34556888876543 


Q ss_pred             --ceeecccCCCCceEEEEEeeCCCEEEE---EecCCeEEEEeCCCcc--EEEEEecCCCCEEEEEEcCCC-CEEEEEeC
Q psy2110         311 --HQIVPIDEDSDLSIVASFDRRGQHVVT---GNSKGKVLVLSCPALE--LKASFKASTTAIKSIEFARRG-NCLLVNTG  382 (622)
Q Consensus       311 --~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~  382 (622)
                        .-...+......+..++|+.++..|++   ......|.+|-+.+..  +.+.+.......  +.|+|-- ..|.+-..
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~  355 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRE  355 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEec
Confidence              233334444445889999999999988   4455569999988765  333343333322  7888843 23444446


Q ss_pred             CCcEEEEecc
Q psy2110         383 DRLIRVYNHQ  392 (622)
Q Consensus       383 d~~i~i~d~~  392 (622)
                      +|...++++.
T Consensus       356 sG~~~v~~~~  365 (1265)
T KOG1920|consen  356 SGQRLVRDFA  365 (1265)
T ss_pred             CCcEEEEEEE
Confidence            6766666654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.70  E-value=0.00012  Score=75.49  Aligned_cols=285  Identities=13%  Similarity=0.115  Sum_probs=157.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..++.++.++.|.-.|..+|+.+-.+......... .  .......+++. ++..++.++.++.|+.+|.++++.+..+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~-~--~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG-C--CDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc-c--cccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence            446777777899999999999877665443210000 0  00000011111 2257778888999999999999998877


Q ss_pred             ccCCcC--eeEEEEcC--CCCEEEEEe---------CCCcEEEEECCCCcEEEEEeCCCC--------------------
Q psy2110         233 SAHMHP--VCSISWSR--NGYKIISAS---------TDNNVCIWDVLTGECEQKYRFPSP--------------------  279 (622)
Q Consensus       233 ~~~~~~--v~~~~~s~--~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~--------------------  279 (622)
                      ......  -..+.-+|  .+..++.++         .++.+..+|..+|+.+-.+.....                    
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            643221  01111112  224455553         367899999999998877763211                    


Q ss_pred             -e-EEEEEeCCCCeEEEEeeCCC------------------cEEEEEecCCceeecccCCCCce------EEEEEe----
Q psy2110         280 -I-LKVQFHPRNDHMFLVCPMRH------------------AAVLVDTDGDHQIVPIDEDSDLS------IVASFD----  329 (622)
Q Consensus       280 -v-~~~~~~~~~~~~~~~~~~~~------------------~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~----  329 (622)
                       + ...++.+.+. +++++..++                  .+.-+|..+++.+..........      ....+.    
T Consensus       217 ~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         217 TSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence             0 1223333344 344454333                  68888988888776654321110      001111    


Q ss_pred             eCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE------------------eCCCcEEE
Q psy2110         330 RRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN------------------TGDRLIRV  388 (622)
Q Consensus       330 ~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~~d~~i~i  388 (622)
                      -+|.   .+++++.+|.+..+|.++|+.+-......   ..++.+|  ..+.++                  ..+|.|.-
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A  370 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA  370 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEE
Confidence            2333   67888899999999999999887655321   1223333  222221                  12455666


Q ss_pred             EecccccccCCCCCCCcceeeecccc------ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         389 YNHQEVLNAGKDGDPEPIQKLQDLVN------KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      .|+.+..         .+-.......      ......-...-.+..|++++. +|.|+.+|.++|+.+-.++-.
T Consensus       371 lD~~tG~---------~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~-dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         371 LDPKTGK---------VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAA-DGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             EeCCCCc---------EeeEeeCCccccccccCCcccCcceEecCCeEEEECC-CCeEEEEECCCCceeeEEECC
Confidence            6655321         1111111000      000000011125677888886 899999999999998887653

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.69  E-value=0.00014  Score=67.96  Aligned_cols=268  Identities=17%  Similarity=0.182  Sum_probs=160.5

Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCceEEEe
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------NDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~dg~i~iwd~~~~~~~~~~  232 (622)
                      +.+.++|..+++.+-.+....             ...+..+|+++.+++++          ..-.|.+||..+......+
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~-------------~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI   83 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF-------------LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI   83 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES-------------SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCcEEEEeeccc-------------CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE
Confidence            468889988887766665443             34567899999988753          2345889999988766543


Q ss_pred             ccC---C----cCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         233 SAH---M----HPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       233 ~~~---~----~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .-.   .    .....++++.|+++++....  -.+|.|.|+..++.+..+..++-..-.   |.++.-|.+-+.||.+.
T Consensus        84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iy---P~~~~~F~~lC~DGsl~  160 (342)
T PF06433_consen   84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIY---PSGNRGFSMLCGDGSLL  160 (342)
T ss_dssp             EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEE---EEETTEEEEEETTSCEE
T ss_pred             ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEE---ecCCCceEEEecCCceE
Confidence            311   1    12345688999998887644  357999999999999988876543333   33333466777788888


Q ss_pred             EEEecCC-ceee----cccCCCC-ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE--EEEecC----------CCCE
Q psy2110         304 LVDTDGD-HQIV----PIDEDSD-LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--ASFKAS----------TTAI  365 (622)
Q Consensus       304 ~~d~~~~-~~~~----~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~----------~~~i  365 (622)
                      .+.+... +...    .+..... ....-++...+..++.-+.+|.|+-.|+......  ..+..-          .+.-
T Consensus       161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~  240 (342)
T PF06433_consen  161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW  240 (342)
T ss_dssp             EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred             EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence            8887632 2211    1222222 2234455566666666788999998888765432  222210          1223


Q ss_pred             EEEEEcCCCCEEEEEe--------CCC--cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC-eEEEee
Q psy2110         366 KSIEFARRGNCLLVNT--------GDR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE-YVCAGS  434 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~--------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~  434 (622)
                      .-+++++..+.|.+.-        .|+  .|.+||+.         ..+.+.++..   ...+.++..+.|.+ +|++.+
T Consensus       241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~---------t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~  308 (342)
T PF06433_consen  241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK---------THKRVARIPL---EHPIDSIAVSQDDKPLLYALS  308 (342)
T ss_dssp             S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT---------TTEEEEEEEE---EEEESEEEEESSSS-EEEEEE
T ss_pred             eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC---------CCeEEEEEeC---CCccceEEEccCCCcEEEEEc
Confidence            3467776655555432        122  35566665         3344444432   23456789999887 554545


Q ss_pred             CCCCeEEEEECCCCeeEEEEecCC
Q psy2110         435 ARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       435 ~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      ..++.|.+||..+|+.++.+.+-.
T Consensus       309 ~~~~~l~v~D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  309 AGDGTLDVYDAATGKLVRSIEQLG  332 (342)
T ss_dssp             TTTTEEEEEETTT--EEEEE---S
T ss_pred             CCCCeEEEEeCcCCcEEeehhccC
Confidence            447899999999999999987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.69  E-value=3.6e-06  Score=83.44  Aligned_cols=182  Identities=20%  Similarity=0.207  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCEEEEee---CC-CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCe--
Q psy2110         145 VTCAFNKRGTLLAVGC---ND-GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGR--  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~---~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~--  217 (622)
                      ..-+|+|+++.++..+   .. ..+.++++.+++.........            .-...+|+|||+.|+... .+|.  
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------------~~~~P~fspDG~~l~f~~~rdg~~~  263 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------------NNGAPAFSPDGSKLAFSSSRDGSPD  263 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------------ccCCccCCCCCCEEEEEECCCCCcc
Confidence            4678999998766542   22 468999999887666555322            124569999999877654 4555  


Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD-N--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      |+++|+.++. ...+....+.-..-.|+|||++|+..+.. |  .|.+++.+.+...+.......-....|+|+|+.+++
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence            6666776666 33355444555578999999999888754 3  577778877766444443333337889999999888


Q ss_pred             EeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec
Q psy2110         295 VCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS  340 (622)
Q Consensus       295 ~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (622)
                      ....++.  +.+.++.+..... ............+.++|+.++..+.
T Consensus       343 ~~~~~g~~~i~~~~~~~~~~~~-~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         343 ESSSGGQWDIDKNDLASGGKIR-ILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             EeccCCceeeEEeccCCCCcEE-EccccccCCCCCcCCCCceEEEecc
Confidence            8855555  5566665544322 2222223334567777777665443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.67  E-value=6.1e-05  Score=74.24  Aligned_cols=294  Identities=13%  Similarity=0.170  Sum_probs=156.7

Q ss_pred             cCCCCEEEEee---------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEE
Q psy2110         150 NKRGTLLAVGC---------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  220 (622)
Q Consensus       150 s~d~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  220 (622)
                      |||+++++...         ..+.+.+||+.+++........            ..+....|||+|+.++... ++.|.+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~------------~~~~~~~~sP~g~~~~~v~-~~nly~   67 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP------------PKLQDAKWSPDGKYIAFVR-DNNLYL   67 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE------------TTBSEEEE-SSSTEEEEEE-TTEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc------------cccccceeecCCCeeEEEe-cCceEE
Confidence            57777776632         2467889999987555444331            2356789999999999886 678999


Q ss_pred             EEcCCCceEEEeccC-----------------CcCeeEEEEcCCCCEEEEEeCC-CcEEEEEC---CCCcEEEEEeCCCC
Q psy2110         221 WDFLTRGIAKIISAH-----------------MHPVCSISWSRNGYKIISASTD-NNVCIWDV---LTGECEQKYRFPSP  279 (622)
Q Consensus       221 wd~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~---~~~~~~~~~~~~~~  279 (622)
                      ++..++...+.-...                 -+.-..+.|||||++|+....| ..|..+.+   .....     ..-.
T Consensus        68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~  142 (353)
T PF00930_consen   68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPE  142 (353)
T ss_dssp             ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-E
T ss_pred             EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCc
Confidence            988777443322111                 1223568899999999987654 33333322   11111     0001


Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ec----ccCCCCceEEEEEeeCCCEEEEE--ecC---CeEEEEeC
Q psy2110         280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VP----IDEDSDLSIVASFDRRGQHVVTG--NSK---GKVLVLSC  349 (622)
Q Consensus       280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~--~~d---g~i~i~d~  349 (622)
                      +..+.+-.-|...     ..-.+.++++.+++.. ..    .......+..+.|.++++.++..  +.+   -.+.++|.
T Consensus       143 ~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~  217 (353)
T PF00930_consen  143 VESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDA  217 (353)
T ss_dssp             EEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEE
T ss_pred             ccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEEC
Confidence            2222221112110     0113556777665432 11    13456677889999999844442  222   24677788


Q ss_pred             CCccEEEEEe-cCCCCE---EEEEEc-CCCCEEE-EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeee-eEE
Q psy2110         350 PALELKASFK-ASTTAI---KSIEFA-RRGNCLL-VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK-KCC  422 (622)
Q Consensus       350 ~~~~~~~~~~-~~~~~i---~~~~~s-~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  422 (622)
                      .++.....+. .....|   ..+.|. +++..++ ....+|.-+||-++.        .....+.+.  .+.-.+. -+.
T Consensus       218 ~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~--------~~~~~~~lT--~G~~~V~~i~~  287 (353)
T PF00930_consen  218 STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL--------DGGKPRQLT--SGDWEVTSILG  287 (353)
T ss_dssp             CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET--------TSSEEEESS---SSS-EEEEEE
T ss_pred             CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc--------cccceeccc--cCceeecccce
Confidence            7766443333 222222   245554 6665444 445677655554441        111122222  1222232 358


Q ss_pred             EcCCCCeEEEeeCC----CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110         423 FSGDGEYVCAGSAR----QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       423 ~spdg~~l~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  477 (622)
                      ++++++.|...+..    ...|+.-++..+..+..|....+. -..+.|||++++++-.
T Consensus       288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~-~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  288 WDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD-HYSASFSPDGKYYVDT  345 (353)
T ss_dssp             EECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST-TEEEEE-TTSSEEEEE
T ss_pred             EcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC-ceEEEECCCCCEEEEE
Confidence            89998877654432    336777788733345666555543 2589999999977643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.66  E-value=2.6e-05  Score=77.68  Aligned_cols=214  Identities=14%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +..+.++|+|+++++++  +|.-.|+.....+...  .|..                    ...+|.+.++ +|+-...+
T Consensus        35 p~~ls~npngr~v~V~g--~geY~iyt~~~~r~k~--~G~g--------------------~~~vw~~~n~-yAv~~~~~   89 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG--DGEYEIYTALAWRNKA--FGSG--------------------LSFVWSSRNR-YAVLESSS   89 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE--TTEEEEEETTTTEEEE--EEE---------------------SEEEE-TSSE-EEEE-TTS
T ss_pred             CeeEEECCCCCEEEEEc--CCEEEEEEccCCcccc--cCce--------------------eEEEEecCcc-EEEEECCC
Confidence            45799999999999977  4788888743333322  2211                    3778998554 66666688


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  243 (622)
                      +|.|+.--.......+....            .+..+-.   |.+|+..+. +.|.+||+.+++.++.+...  +|..+.
T Consensus        90 ~I~I~kn~~~~~~k~i~~~~------------~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~  151 (443)
T PF04053_consen   90 TIKIYKNFKNEVVKSIKLPF------------SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVI  151 (443)
T ss_dssp             -EEEEETTEE-TT-----SS-------------EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEE
T ss_pred             eEEEEEcCccccceEEcCCc------------ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEE
Confidence            99997443433333333322            1222222   787777764 48999999999999998743  489999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCC------------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTG------------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      |+++|.+++..+.+ .+.|++.+..            ...........|.+.+|..+   .++-.+.. .++.  +-++.
T Consensus       152 Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~~-~lkY--l~~Ge  224 (443)
T PF04053_consen  152 WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTSN-HLKY--LVNGE  224 (443)
T ss_dssp             E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-TT-EEEE--EETTE
T ss_pred             EECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcCC-eEEE--EEcCC
Confidence            99999999988754 6888876544            22222234678889999876   33333333 4544  22221


Q ss_pred             --eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         312 --QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       312 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                        .+..+   ...++-+.+.+..+.++....++.+..+.+.
T Consensus       225 ~~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  225 TGIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             cceEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence              12222   2344445555555566666666666655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=98.65  E-value=1.1e-05  Score=80.41  Aligned_cols=129  Identities=18%  Similarity=0.325  Sum_probs=93.9

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy2110         148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       148 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                      +++..+++++.|+..|.+++|+-..+.....-....          ...+..+..|++..++|.|+..|.|.++-+..+.
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~----------~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGA----------TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCc----------cceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence            455678899999999999999987765543322111          1346677889999999999999999999887643


Q ss_pred             eEE-----Ee-ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEEeCCCCeEEEEEe
Q psy2110         228 IAK-----II-SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-----ECEQKYRFPSPILKVQFH  286 (622)
Q Consensus       228 ~~~-----~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~  286 (622)
                      +..     .. +.|...|++++|++++..+++|...|+|.+-.+.+.     .....+..++.|..+.+.
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            211     11 247789999999999999999999999998887762     112233356666666554

>KOG1645|consensus

Probab=98.63  E-value=4.4e-06  Score=77.37  Aligned_cols=235  Identities=16%  Similarity=0.240  Sum_probs=143.3

Q ss_pred             cceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEE
Q psy2110         142 SLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIV  219 (622)
Q Consensus       142 ~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~  219 (622)
                      ..|+.++|||..+ ++..++.+..|+|.|+++......+..+.            .+++++|.-+. ++++.|..+|.|.
T Consensus       194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------------~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------------QIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC------------CceeeeeccCCcceeEEeccCceEE
Confidence            3558999999888 78889999999999999988777776663            47899998765 4677778899999


Q ss_pred             EEEcCCCc-eEEEecc--CCcCeeEEEEc------CCCCEEEEEeCCCcEEEEECCC----CcEEEEEeCCCCeEEEEEe
Q psy2110         220 LWDFLTRG-IAKIISA--HMHPVCSISWS------RNGYKIISASTDNNVCIWDVLT----GECEQKYRFPSPILKVQFH  286 (622)
Q Consensus       220 iwd~~~~~-~~~~~~~--~~~~v~~~~~s------~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~~  286 (622)
                      +||++..+ .+..+.+  ...+|..++.-      +.|..|+....+  +..|++..    .-++..+..++...+++++
T Consensus       262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~  339 (463)
T KOG1645|consen  262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYH  339 (463)
T ss_pred             EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeec
Confidence            99998643 2222222  12344444332      334455554433  45666542    2233444467788888888


Q ss_pred             CCCCeEEEEeeCCCc---EE---E-EEecCCceeecc-cCC-CCc------eEEEEEeeCCCEEE-EEecCCeEEEEeCC
Q psy2110         287 PRNDHMFLVCPMRHA---AV---L-VDTDGDHQIVPI-DED-SDL------SIVASFDRRGQHVV-TGNSKGKVLVLSCP  350 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~---i~---~-~d~~~~~~~~~~-~~~-~~~------~~~~~~~~~~~~l~-~~~~dg~i~i~d~~  350 (622)
                      +..++++++.-.+.+   ++   . .|...+..+... ..+ ...      -..+.-.++..+++ +|...+.+.+||..
T Consensus       340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~  419 (463)
T KOG1645|consen  340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH  419 (463)
T ss_pred             CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence            888888877654321   11   0 111122111110 011 000      00111123444544 45667889999999


Q ss_pred             CccEEEEEecCCCCEEEEEEcC-CC-CEEEEEeCCCcEEEEecc
Q psy2110         351 ALELKASFKASTTAIKSIEFAR-RG-NCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~~s~-~~-~~l~~~~~d~~i~i~d~~  392 (622)
                      +++.++++... .+|..++... ++ .+|++-+ |..++||..+
T Consensus       420 s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  420 SFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99999988765 7777776643 33 3454444 6678887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.61  E-value=9.7e-05  Score=76.09  Aligned_cols=299  Identities=13%  Similarity=0.086  Sum_probs=164.0

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcccccee--EEEEcCCCCEEEEecCCCCeEEEEEcCCCce
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK--KCCFSGDGEYVCAGSARQHALYIWEKSVGNL  116 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~  116 (622)
                      .+..+.+++.++.+...|..+....-.........     .....+.  .++.. ++..++.++.+ +.|+-+|.++|+.
T Consensus        60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~-----~~~~~~~~~g~~~~-~~~~V~v~~~~-g~v~AlD~~TG~~  132 (488)
T cd00216          60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD-----RGCCDVVNRGVAYW-DPRKVFFGTFD-GRLVALDAETGKQ  132 (488)
T ss_pred             ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc-----ccccccccCCcEEc-cCCeEEEecCC-CeEEEEECCCCCE
Confidence            35667777778888888876443221110000000     0000000  01111 22566666654 8999999999999


Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee---------CCCcEEEEecCCcccccccccccCCCc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC---------NDGRIVLWDFLTRGIAKIISAHMHPEF  187 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~  187 (622)
                      +..+........  ....      .   .+..+.  +.+++.++         .++.+..+|..+|+.+-.+........
T Consensus       133 ~W~~~~~~~~~~--~~~i------~---ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~  199 (488)
T cd00216         133 VWKFGNNDQVPP--GYTM------T---GAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN  199 (488)
T ss_pred             eeeecCCCCcCc--ceEe------c---CCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence            988765432100  0000      0   011121  23444443         367888889999887766544211100


Q ss_pred             -cccc--------ccccce-EEEEECCCCCEEEEEeCCC------------------eEEEEEcCCCceEEEeccCCcCe
Q psy2110         188 -DGAL--------DCISLA-VTCAFNKRGTLLAVGCNDG------------------RIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       188 -~~~~--------~~~~~v-~~~~~s~~g~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                       ....        .....+ ...++.+.+..++.++.++                  .|.-+|+.+++....++.-....
T Consensus       200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~  279 (488)
T cd00216         200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDL  279 (488)
T ss_pred             CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCC
Confidence             0000        000001 1345566667777777655                  79999999999988765211111


Q ss_pred             e------EEEEc----CCCC---EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE-----------
Q psy2110         240 C------SISWS----RNGY---KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV-----------  295 (622)
Q Consensus       240 ~------~~~~s----~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------  295 (622)
                      .      ...+.    -++.   .++.++.+|.+...|.++|+.+.......  ..+..+|  ..+++.           
T Consensus       280 ~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~  355 (488)
T cd00216         280 WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQ  355 (488)
T ss_pred             cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCccc
Confidence            1      11111    1343   57778889999999999999887765321  1123333  222221           


Q ss_pred             ------eeCCCcEEEEEecCCceeecccCCC--------CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC
Q psy2110         296 ------CPMRHAAVLVDTDGDHQIVPIDEDS--------DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS  361 (622)
Q Consensus       296 ------~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  361 (622)
                            ...++.+.-+|+.+++.+.......        ...........+..|++++.+|.++.+|..+|+.+.+++..
T Consensus       356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence                  1235678888888877666554331        11111111235678899999999999999999999887754

The alignment model contains an 8-bladed beta-propeller.

>KOG4714|consensus

Probab=98.61  E-value=1.1e-06  Score=76.34  Aligned_cols=152  Identities=13%  Similarity=0.178  Sum_probs=95.4

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-----CCCeEEEEE
Q psy2110         148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-----NDGRIVLWD  222 (622)
Q Consensus       148 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~dg~i~iwd  222 (622)
                      +.+--++.++++..||.+.+.+.+.-  .+ +.......   ..    .-.+.++-..++.+.++.     .-+..+.|+
T Consensus        96 ~~s~~~t~V~~~~~dg~~~v~s~~~~--~~-~~~~i~~~---~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~  165 (319)
T KOG4714|consen   96 ACTMTDNRVCIGYADGSLAVFSTDKD--LA-LMSRIPSI---HS----GSASRKICRHGNSILSGGCGNWNAQDNFYANT  165 (319)
T ss_pred             cccccCCceEecCCCceEEEEechHH--Hh-hhhhcccc---cc----cccccceeecccEEecCCcceEeeccceeeec
Confidence            33445678999999999999987651  11 11110000   00    011223333445554432     123455666


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEE-e-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKY-R-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      +...+....-+.-...|.+++-+|.. +.+++|+.||.+-+||.+.......+ . |+.++..+.|+|..+.-+++++.|
T Consensus       166 ~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  166 LDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             ccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            55433221111122348899988854 56677888999999999987443332 2 889999999999988889999999


Q ss_pred             CcEEEEEecC
Q psy2110         300 HAAVLVDTDG  309 (622)
Q Consensus       300 ~~i~~~d~~~  309 (622)
                      |.+..||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999765

>KOG2695|consensus

Probab=98.60  E-value=2.6e-07  Score=83.50  Aligned_cols=150  Identities=11%  Similarity=0.111  Sum_probs=119.3

Q ss_pred             EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEEeCCCCeEEEE
Q psy2110         210 AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-----ECEQKYRFPSPILKVQ  284 (622)
Q Consensus       210 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~  284 (622)
                      ++.+.+-.+-+-+++++-.. .+. ..+.|.++.|...++.+..|...|.|..+|++.+     .+.+.+-|++.|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            44455777888898887543 333 5678999999988899999999999999999864     5677788999999998


Q ss_pred             EeCCCCeEEEEeeCCCcEEEEEecCCce---eecccCCCCceEE--EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQ---IVPIDEDSDLSIV--ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      ........+++.+.+|.|.+||++..+.   +....+|-.....  +.+.+....+++++.|...+||.++.+.++.++.
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            8875556788899999999999987665   6777776544332  3445667788889999999999999999998887


Q ss_pred             cC
Q psy2110         360 AS  361 (622)
Q Consensus       360 ~~  361 (622)
                      ..
T Consensus       386 f~  387 (425)
T KOG2695|consen  386 FP  387 (425)
T ss_pred             CC
Confidence            54

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.60  E-value=0.00012  Score=69.72  Aligned_cols=272  Identities=13%  Similarity=0.141  Sum_probs=130.5

Q ss_pred             EECCCCCEEEEEeC-C--CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q psy2110         201 AFNKRGTLLAVGCN-D--GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP  277 (622)
Q Consensus       201 ~~s~~g~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  277 (622)
                      +|.++|+.|+.++. +  ..+.+.|+.+++..+.-.+.........++++++.++.......|+-.|+.+.+....+..+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            67889987766654 4  45777788888765544332233445677888888877766778999999999888777765


Q ss_pred             CCeE-EEEEe--CCCCeEEEEee---------------------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCC
Q psy2110         278 SPIL-KVQFH--PRNDHMFLVCP---------------------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       278 ~~v~-~~~~~--~~~~~~~~~~~---------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                      .... ...|.  .++..++.+-.                     ....|...|+.+++.. .+......+..+.|+|...
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCcccCCCCC
Confidence            5443 35554  33433222111                     0123444455554332 2222345556778888665


Q ss_pred             EEEEEecCC-------eEEEEeCCCccEEEEEecC--CCCEEEEEEcCCCCEEEEEeC-----CCcEEEEecccccccCC
Q psy2110         334 HVVTGNSKG-------KVLVLSCPALELKASFKAS--TTAIKSIEFARRGNCLLVNTG-----DRLIRVYNHQEVLNAGK  399 (622)
Q Consensus       334 ~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~  399 (622)
                      .+++=+..|       +|.+.+.. +.....+..+  ...+..=-|.|||..|..-+.     +..|.-+|+.+      
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t------  273 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT------  273 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------
T ss_pred             CEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC------
Confidence            555433322       34444533 3333333322  223444568999987776432     33456666652      


Q ss_pred             CCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC---------------CCeEEEEECCCCeeEEEE---------e
Q psy2110         400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR---------------QHALYIWEKSVGNLVKIL---------H  455 (622)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---------------d~~i~iwd~~~~~~~~~~---------~  455 (622)
                       +....+  ...    ......--++||++++.-+.+               +-.|++++...+......         .
T Consensus       274 -~~~~~~--~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~  346 (386)
T PF14583_consen  274 -GERRRL--MEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD  346 (386)
T ss_dssp             ---EEEE--EEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred             -CCceEE--EeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence             111111  111    112345667899988754432               125778888877643221         1


Q ss_pred             cCCCCceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110         456 GTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQ  487 (622)
Q Consensus       456 ~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~  487 (622)
                      ++....=..+.|+||+++|+..+  .|...||-+
T Consensus       347 ~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  347 GDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            11111124589999999888777  677666654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2e-07  Score=58.21  Aligned_cols=39  Identities=28%  Similarity=0.601  Sum_probs=36.6

Q ss_pred             CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy2110         226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD  264 (622)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd  264 (622)
                      ++++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=3e-07  Score=57.39  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=37.0

Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      ++++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3617|consensus

Probab=98.55  E-value=4.7e-06  Score=84.30  Aligned_cols=268  Identities=12%  Similarity=0.090  Sum_probs=153.2

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +.++||+|..-.|+.|-.. |.+.+|...+.+.-.....|..++                 ..+.||++|..|+++..=|
T Consensus        62 atSLCWHpe~~vLa~gwe~-g~~~v~~~~~~e~htv~~th~a~i-----------------~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEM-GVSDVQKTNTTETHTVVETHPAPI-----------------QGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             hhhhccChHHHHHhhcccc-ceeEEEecCCceeeeeccCCCCCc-----------------eeEEecCCCCeEEEcCCCc
Confidence            4569999998778877765 899999998877777777888887                 5999999999999999999


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC------EEEEEeCCCeEE-EEEcCCCceEEEeccCC
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT------LLAVGCNDGRIV-LWDFLTRGIAKIISAHM  236 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~------~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~  236 (622)
                      .+.+|.+.-...++....-.+.     +...-...|...++++.      ..++.+.+.-+- .++.......+... | 
T Consensus       124 ~v~lwr~d~~g~~q~~~~~~he-----l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-  196 (1416)
T KOG3617|consen  124 SVHLWRYDVIGEIQTSNIMQHE-----LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-  196 (1416)
T ss_pred             eeEEEEeeeccccccchhhhhH-----hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-
Confidence            9999987633222221111100     00011234556677643      123333333322 33322111111111 1 


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec--------
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD--------  308 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~--------  308 (622)
                            .=.|+|..++.++.+|+|+-.| ..|++.......+.| .+-|.+....+.+.. .+-.+.++-..        
T Consensus       197 ------sgv~~g~~F~~~~~~GtVyyvd-q~g~~~~V~k~dS~v-QmLf~~~~eai~~i~-e~lr~~l~~v~~~G~~ee~  267 (1416)
T KOG3617|consen  197 ------SGVPKGTEFLFAGKSGTVYYVD-QNGRQRTVHKLDSEV-QMLFMGYCEAISIII-EFLRDCLIFVLAKGTSEER  267 (1416)
T ss_pred             ------cCCCCCcEEEEEcCCceEEEEc-CCCcEEEEEEccchH-HHHHhcccceEEEEe-eeceeeEEEecCCCchHHh
Confidence                  1146888899999999988887 345555554433321 122222111111110 01111111000        


Q ss_pred             --------CCce------------e----ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc-------cEEEE
Q psy2110         309 --------GDHQ------------I----VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL-------ELKAS  357 (622)
Q Consensus       309 --------~~~~------------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~  357 (622)
                              .+..            +    .--......+.|++|+..+..+..|...|.+.+|--...       +-..+
T Consensus       268 ~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~  347 (1416)
T KOG3617|consen  268 CAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWT  347 (1416)
T ss_pred             hhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEE
Confidence                    0000            0    000123456889999999999999999999999953221       22223


Q ss_pred             Ee---cCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         358 FK---ASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       358 ~~---~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                      +.   ...+.|+.+.|.|--..+++.+....
T Consensus       348 l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v  378 (1416)
T KOG3617|consen  348 LNGKRESLGKISLIRWGPIKSTAAVNTEEDV  378 (1416)
T ss_pred             ecCchhhccceEEEEeccccchhhhhhhhhe
Confidence            33   33567999999997776666655433

>KOG2066|consensus

Probab=98.55  E-value=1.2e-05  Score=81.36  Aligned_cols=181  Identities=19%  Similarity=0.323  Sum_probs=134.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .++|++++  ++.|+.|+.+|.|++++... .. .+...|...      ..+|.++++|+.||+|.|-.+-+.+....+.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            35566665  47899999999999998643 33 444445433      5589999999999999999999999999999


Q ss_pred             CCCCeEEEEEeCC----CCeEEEEeeCCCcEEEEEec--CCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         276 FPSPILKVQFHPR----NDHMFLVCPMRHAAVLVDTD--GDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       276 ~~~~v~~~~~~~~----~~~~~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      +..++.+++++|+    ....+++|+..| +.++..+  +......+....+.|.++.|.  |.++|-++..| |++||+
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~  186 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT  186 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence            9999999999998    344688888888 7776543  222223456667888888885  77999998888 999999


Q ss_pred             CCccEEEEEecCCCCE------EEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         350 PALELKASFKASTTAI------KSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+++.+..++.....+      ..+.|.++.+ |+.| ...+|+|..++
T Consensus       187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK  233 (846)
T ss_pred             cccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence            9998887776544433      3466776655 4444 34478888777

>KOG1897|consensus

Probab=98.53  E-value=0.0016  Score=68.11  Aligned_cols=370  Identities=12%  Similarity=0.093  Sum_probs=192.9

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCC------CEEEEecCCCCeEEEEEcC
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG------EYVCAGSARQHALYIWEKS  112 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~------~~l~~~~~~~~~i~vwd~~  112 (622)
                      +...++.+++++.+....+..          ...+......-...+.|+.++|-|      ++++.|..++-.+.+--..
T Consensus       498 n~sqVvvA~~~~~l~y~~i~~----------~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p  567 (1096)
T KOG1897|consen  498 NASQVVVAGGGLALFYLEIED----------GGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP  567 (1096)
T ss_pred             cceEEEEecCccEEEEEEeec----------cceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence            344566666666665555432          122223333344556788999752      2677787764444444444


Q ss_pred             CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCCcccc
Q psy2110         113 VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGA  190 (622)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~  190 (622)
                      ....+....-....+             ...|.-..|--|..+|.++..||.+.-|.+.  +|.....-+.+...     
T Consensus       568 d~~~~~~~~l~~~~i-------------PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt-----  629 (1096)
T KOG1897|consen  568 DLILITHEQLSGEII-------------PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT-----  629 (1096)
T ss_pred             CcceeeeeccCCCcc-------------chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCC-----
Confidence            443332221111111             0111244555678899999999998877554  44322222111111     


Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE-EEeccCCcCeeE-EEEcC--CCCEEEEEeCCCcEEEEECC
Q psy2110         191 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISAHMHPVCS-ISWSR--NGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       191 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~-~~~s~--~~~~l~s~~~d~~i~iwd~~  266 (622)
                          .++.--.|+..++.-+.+..|.-..+|..+ ++.. ..+.-  ..+.. ..|+.  -...|+++. .+.+++.-+.
T Consensus       630 ----~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid  701 (1096)
T KOG1897|consen  630 ----QPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTID  701 (1096)
T ss_pred             ----CCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEec
Confidence                123334565555444444456656666533 3322 11111  01111 12222  223466654 3567777665


Q ss_pred             CCc--EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeE
Q psy2110         267 TGE--CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV  344 (622)
Q Consensus       267 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  344 (622)
                      .-+  ..+++........+++.+... ++.+.+.......         . .           +.  .++.+     ..+
T Consensus       702 ~iqkl~irtvpl~~~prrI~~q~~sl-~~~v~s~r~e~~~---------~-~-----------~~--ee~~~-----s~l  752 (1096)
T KOG1897|consen  702 EIQKLHIRTVPLGESPRRICYQESSL-TFGVLSNRIESSA---------E-Y-----------YG--EEYEV-----SFL  752 (1096)
T ss_pred             chhhcceeeecCCCChhheEecccce-EEEEEecccccch---------h-h-----------cC--CcceE-----EEE
Confidence            433  234455667788888887333 3333322211100         0 0           00  01111     147


Q ss_pred             EEEeCCCccEEEEEecC-C---CCEEEEEEcCC-CCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceee
Q psy2110         345 LVLSCPALELKASFKAS-T---TAIKSIEFARR-GNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKL  409 (622)
Q Consensus       345 ~i~d~~~~~~~~~~~~~-~---~~i~~~~~s~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~  409 (622)
                      +++|-.+.+.+...+.. .   -.|.+..|..| +.++++|+.          .|.|.+|...+         ...++..
T Consensus       753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e---------~~~L~~v  823 (1096)
T KOG1897|consen  753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE---------LNSLELV  823 (1096)
T ss_pred             EEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec---------CCceeee
Confidence            77777776655544321 1   23445568777 677887762          47788887772         2233333


Q ss_pred             eccccceeeeeE-EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         410 QDLVNKTMWKKC-CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       410 ~~~~~~~~~~~~-~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ....-...+.++ .|  +|++||.-+.   .|++|+..+++.++.-..+... +..+...-.+..++.|. =+.+.+-..
T Consensus       824 ~e~~v~Gav~aL~~f--ngkllA~In~---~vrLye~t~~~eLr~e~~~~~~-~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  824 AETVVKGAVYALVEF--NGKLLAGINQ---SVRLYEWTTERELRIECNISNP-IIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             eeeeeccceeehhhh--CCeEEEecCc---EEEEEEccccceehhhhcccCC-eEEEEEEecCcEEEEeeccceEEEEEE
Confidence            333333333332 23  6777776654   7999999988777766666665 88888888899999988 666666555


Q ss_pred             C
Q psy2110         488 N  488 (622)
Q Consensus       488 ~  488 (622)
                      .
T Consensus       898 ~  898 (1096)
T KOG1897|consen  898 K  898 (1096)
T ss_pred             e
Confidence            4

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=0.00048  Score=68.39  Aligned_cols=261  Identities=15%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCC-CCeEEEEEeCCCCeEEEE
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFP-SPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~  295 (622)
                      +.+++..+......+..+. ....+...+++..++.... ...+...+............. .....++.++.+..+++.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            5555554444444444332 5567788888865554432 224555555422222222222 445678899999988888


Q ss_pred             eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEEEEecCCCCEEEEEEcC
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---KGKVLVLSCPALELKASFKASTTAIKSIEFAR  372 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  372 (622)
                      ...++.+.+.|.............. ....++++++++.++++..   ++.+.+.|..+.+.......-..+ ..++++|
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p  169 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP  169 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence            8889999999977665555444333 5567899999988877665   689999999999888886554445 8999999


Q ss_pred             CCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC--CeEEEEECCCCe
Q psy2110         373 RGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ--HALYIWEKSVGN  449 (622)
Q Consensus       373 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d--~~i~iwd~~~~~  449 (622)
                      +|..++++. .++.|.+.|........ .   ........   ...-..+.++|+|.++.......  +.+...|..++.
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~---~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGV---GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceec-c---cccccccc---CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence            999777665 68899999976321110 0   00000111   11113469999999887766533  589999999888


Q ss_pred             eEEE-EecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecCC
Q psy2110         450 LVKI-LHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQNQ  489 (622)
Q Consensus       450 ~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~  489 (622)
                      .... +..... ....+..+|++..+....  .+.+.+-+...
T Consensus       243 v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         243 VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            7665 333332 267799999999988886  47788877654

>KOG2066|consensus

Probab=98.50  E-value=1.6e-05  Score=80.38  Aligned_cols=179  Identities=18%  Similarity=0.252  Sum_probs=125.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      .+.|++++  +++++.|+.+ |.|++.+.. +.. .....|...                       .-+|.++++|+.|
T Consensus        41 ~is~~av~--~~~~~~GtH~-g~v~~~~~~-~~~-~~~~~~s~~-----------------------~~~Gey~asCS~D   92 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHR-GAVYLTTCQ-GNP-KTNFDHSSS-----------------------ILEGEYVASCSDD   92 (846)
T ss_pred             HHHHHHhh--cceeeecccc-ceEEEEecC-Ccc-ccccccccc-----------------------ccCCceEEEecCC
Confidence            34456664  6889999986 899999875 332 333333321                       4579999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-----CCEEEEEeCCCeEEEEEcC--CCceEEEeccC
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-----GTLLAVGCNDGRIVLWDFL--TRGIAKIISAH  235 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~  235 (622)
                      |.|.|-.+.+.+....+..+.            ++.+++++|+     .+.+++|+..| +.++.-.  ..+....+...
T Consensus        93 Gkv~I~sl~~~~~~~~~df~r------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   93 GKVVIGSLFTDDEITQYDFKR------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CcEEEeeccCCccceeEecCC------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            999999988877766665553            4688999997     56888999888 7776532  11112245667


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------CeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS-------PILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      .++|.++.|.  |++||-++.+| |++||+.+++.+..+..+.       -...+.|.++..  ++. +...+|++..++
T Consensus       160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVI-GWGDSVKICSIK  233 (846)
T ss_pred             ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEE-ecCCeEEEEEEe
Confidence            7899999994  77888887766 8999999998887776332       234577777654  222 345566666665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.0006  Score=67.76  Aligned_cols=263  Identities=13%  Similarity=0.124  Sum_probs=170.2

Q ss_pred             eEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEE
Q psy2110         197 AVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ...+.+.+++..++.... ...+...+................-..++.++.+..++.. ..++.|.+.|..+.+.....
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~  112 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI  112 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence            356788888865554432 2245555444221112122111334577888888755544 44589999999888888888


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCC
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPA  351 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  351 (622)
                      ........++++|+++.+.++-.  .++.+.+.|..+............. ..++++|+|..+++.. .++.|.++|...
T Consensus       113 ~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         113 PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC
Confidence            76668889999999998888877  4788999998887777664443333 7899999999776655 778999999776


Q ss_pred             ccEEE-E---EecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc
Q psy2110         352 LELKA-S---FKASTTAIKSIEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS  424 (622)
Q Consensus       352 ~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  424 (622)
                      ..... .   .......-..+.++|+|.++.+....   +.+...|....          .+..............+.++
T Consensus       192 ~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~----------~v~~~~~~~~~~~~~~v~~~  261 (381)
T COG3391         192 NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG----------NVTATDLPVGSGAPRGVAVD  261 (381)
T ss_pred             cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc----------eEEEeccccccCCCCceeEC
Confidence            65553 1   11122334578999999977766543   57888887631          11111111111022346899


Q ss_pred             CCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC--CceeEEEECCC
Q psy2110         425 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG--ELLLDVVWHPV  470 (622)
Q Consensus       425 pdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~v~~v~~sp~  470 (622)
                      |+|+++.......+.+.+-|..+............  ..+..+++.+.
T Consensus       262 p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         262 PAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             CCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            99999988866568899999888777766544332  11445555443

>KOG1275|consensus

Probab=98.47  E-value=7.4e-06  Score=83.74  Aligned_cols=181  Identities=11%  Similarity=0.182  Sum_probs=134.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEE
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKV  283 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~  283 (622)
                      ++..++.|+-...+..+|+.+.+..+...-....|.-++.  +++.+.+|...|+|.+-|.++.+.+.++. |.+.+..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4456777777788889999988877766544445555554  67899999999999999999999999998 77888776


Q ss_pred             EEeCCCCeEEEEeeC---------CCcEEEEEecCCceeecccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCC---
Q psy2110         284 QFHPRNDHMFLVCPM---------RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCP---  350 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~---  350 (622)
                      ...  |+ ++++|+.         |.-+.+||++..+.+..+..+.+. .-+.|.|. ...+++.+..|...+-|..   
T Consensus       224 Dv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  224 DVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             ecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence            665  44 5566553         446789999988777766655444 23456664 3567888889999998843   


Q ss_pred             Ccc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         351 ALE-LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       351 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      +.. -+..+......+..+.++++++.++.+..+|.|.+|.-
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            321 22233344455999999999999999999999999973

>KOG2114|consensus

Probab=98.46  E-value=5.5e-05  Score=77.28  Aligned_cols=210  Identities=12%  Similarity=0.136  Sum_probs=131.4

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC---
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG---  163 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---  163 (622)
                      -+|++.+..++.|+.+ |.|.+.+- .-+.++.++.+...+.                ..+....+..+|++.+.|+   
T Consensus        29 sc~~s~~~~vvigt~~-G~V~~Ln~-s~~~~~~fqa~~~siv----------------~~L~~~~~~~~L~sv~Ed~~~n   90 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTAD-GRVVILNS-SFQLIRGFQAYEQSIV----------------QFLYILNKQNFLFSVGEDEQGN   90 (933)
T ss_pred             eEEcCCCceEEEeecc-ccEEEecc-cceeeehheecchhhh----------------hHhhcccCceEEEEEeecCCCC
Confidence            3788999999999976 77766652 2344477777776631                2233233335777776664   


Q ss_pred             --cEEEEecCCccccc---ccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC----CCceEEEecc
Q psy2110         164 --RIVLWDFLTRGIAK---IISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL----TRGIAKIISA  234 (622)
Q Consensus       164 --~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~----~~~~~~~~~~  234 (622)
                        .++||+++.-+.-.   .+..|..-..... ....++.+++.+.+-+.+|+|-.+|.|..+.-+    .+........
T Consensus        91 p~llkiw~lek~~~n~sP~c~~~~ri~~~~np-~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~  169 (933)
T KOG2114|consen   91 PVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP-TNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR  169 (933)
T ss_pred             ceEEEEecccccCCCCCcceeeeeeeeccCCC-CCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc
Confidence              49999987532111   1100000000000 112467889999999999999999999998532    1222222234


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC-EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      ...+|+++++..+++.++.+..-..|.+|.+....+ ...+. +..++.|..+++....++++  .+..+.+|+......
T Consensus       170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca--~~e~l~fY~sd~~~~  247 (933)
T KOG2114|consen  170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA--GSEFLYFYDSDGRGP  247 (933)
T ss_pred             CCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe--cCceEEEEcCCCcce
Confidence            567999999999988744444557899999884442 33344 66788888888866544433  356688888876655


Q ss_pred             eeccc
Q psy2110         313 IVPID  317 (622)
Q Consensus       313 ~~~~~  317 (622)
                      ...+.
T Consensus       248 cfaf~  252 (933)
T KOG2114|consen  248 CFAFE  252 (933)
T ss_pred             eeeec
Confidence            55554

>KOG3621|consensus

Probab=98.41  E-value=0.00013  Score=73.16  Aligned_cols=160  Identities=16%  Similarity=0.285  Sum_probs=105.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +.--+++..+++++.|++. |.+++|+-..++....-.+-...+.                ..+..+++..++|.|+..|
T Consensus        36 v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~----------------~~~~vs~~e~lvAagt~~g   98 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGIT----------------CVRSVSSVEYLVAAGTASG   98 (726)
T ss_pred             EEEEEeecCCceEEEeccc-ceEEEEecCchhhhcccccCccceE----------------EEEEecchhHhhhhhcCCc
Confidence            3445788899999999986 9999999877765544332222221                4778899999999999999


Q ss_pred             cEEEEecCCccccccc-ccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc----eEEEeccCCcC
Q psy2110         164 RIVLWDFLTRGIAKII-SAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHP  238 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~  238 (622)
                      .|.++-+..+...... -.+...      .+...|++++|++++..+++|...|.|.+-.+.+..    ..+.+......
T Consensus        99 ~V~v~ql~~~~p~~~~~~t~~d~------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   99 RVSVFQLNKELPRDLDYVTPCDK------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             eEEeehhhccCCCcceeeccccc------cCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            9999988764222111 111111      112469999999999999999999999998887721    12233334567


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      |..+... ++..|++...  .-.+++++.++
T Consensus       173 IVQlD~~-q~~LLVStl~--r~~Lc~tE~et  200 (726)
T KOG3621|consen  173 IVQLDYL-QSYLLVSTLT--RCILCQTEAET  200 (726)
T ss_pred             eEEeecc-cceehHhhhh--hhheeecchhH
Confidence            7777765 3444444332  23455555443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.38  E-value=0.0022  Score=66.41  Aligned_cols=200  Identities=15%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..|++++.++.|.-.|..+|+.+-.+.............+...-..+++.  +..++.++.++.+..+|..+|+.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            456777777888999999999877665433211000000000000112222  345777888999999999999988766


Q ss_pred             ccCCcC-eeEEEEcC---CCCEEEEEeC------CCcEEEEECCCCcEEEEEeCC-CC----------------------
Q psy2110         233 SAHMHP-VCSISWSR---NGYKIISAST------DNNVCIWDVLTGECEQKYRFP-SP----------------------  279 (622)
Q Consensus       233 ~~~~~~-v~~~~~s~---~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~-~~----------------------  279 (622)
                      ...... -..+.-+|   ++ .++.+..      +|.|..+|.++|+.+-.+... ..                      
T Consensus       147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            521110 01111122   44 4555432      688999999999987765521 10                      


Q ss_pred             ---------e-EEEEEeCCCCeEEEEeeC----C-----------CcEEEEEecCCceeecccCCCCce---------EE
Q psy2110         280 ---------I-LKVQFHPRNDHMFLVCPM----R-----------HAAVLVDTDGDHQIVPIDEDSDLS---------IV  325 (622)
Q Consensus       280 ---------v-~~~~~~~~~~~~~~~~~~----~-----------~~i~~~d~~~~~~~~~~~~~~~~~---------~~  325 (622)
                               + ..+.+.|....+++..+.    .           ..+.-.|+++++....++.....+         .-
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l  305 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL  305 (527)
T ss_pred             CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence                     0 023455544433333322    1           156677778877766554422211         11


Q ss_pred             EEEeeCCC---EEEEEecCCeEEEEeCCCccEE
Q psy2110         326 ASFDRRGQ---HVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       326 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      +.+..+|+   .++.+..+|.++++|..+++++
T Consensus       306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            22334665   7788999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2114|consensus

Probab=98.33  E-value=0.00017  Score=73.83  Aligned_cols=203  Identities=11%  Similarity=0.145  Sum_probs=125.9

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC-C----cEEEEEecCC------
Q psy2110         243 SWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR-H----AAVLVDTDGD------  310 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~-~----~i~~~d~~~~------  310 (622)
                      +|++.+..++.|+.+|.|.+.+- +-+.++.+. ++..+...-+.-++..++++-+.| .    .+++|++..-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            46778889999999999888763 333334444 444433344444454455554433 3    5899998532      


Q ss_pred             cee-----ec--ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC---C-ccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         311 HQI-----VP--IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP---A-LELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       311 ~~~-----~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      ..+     ..  ......++.+++++.+-+.+|+|-.+|.|..+.-.   . +....-......+|+++++..+++.++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            222     11  12235677889999999999999999999988521   1 2222222345688999999999987555


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cCC
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTK  458 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~  458 (622)
                      +..-..|.+|.+..        .. +.... ...++....+.+|++....+++++  +..+++|+.....+...+. ||.
T Consensus       189 v~Tt~~V~~y~l~g--------r~-p~~~~-ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~k  256 (933)
T KOG2114|consen  189 VATTEQVMLYSLSG--------RT-PSLKV-LDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEK  256 (933)
T ss_pred             EEecceeEEEEecC--------CC-cceee-eccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCe
Confidence            55556789998873        11 22221 112334456667776555344444  2369999988666666665 554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.32  E-value=0.00053  Score=67.51  Aligned_cols=271  Identities=14%  Similarity=0.128  Sum_probs=139.9

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      |+.+.|+++..-|++|...|.|.||.+...+...  .....+           -....+.+      ....++.-.+-|+
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~-----------~~~~~~~~------~~~~~~~~~l~di   64 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPP-----------DLDYNFRR------FSLNNSPGKLTDI   64 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------------------S--------GGGSS-SEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCc-----------ccCccccc------ccccCCCcceEEe
Confidence            5799999999999999999999999887643332  000000           00111111      0111112223333


Q ss_pred             CC---------CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEE
Q psy2110         224 LT---------RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---------PSPILKVQF  285 (622)
Q Consensus       224 ~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~  285 (622)
                      ..         -.+...+....++|++++.|.= .+++.|..+|.+.|.|++....+..-..         ...++++.|
T Consensus        65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             GGG--TT-SEEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred             hhhCCcccccccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence            21         1133445556899999999854 4899999999999999998888776442         235777777


Q ss_pred             eC-----CC--CeEEEEeeCCCcEEEEEecC-C-c-----eeecccCCCCceEEEE-EeeC-----------------C-
Q psy2110         286 HP-----RN--DHMFLVCPMRHAAVLVDTDG-D-H-----QIVPIDEDSDLSIVAS-FDRR-----------------G-  332 (622)
Q Consensus       286 ~~-----~~--~~~~~~~~~~~~i~~~d~~~-~-~-----~~~~~~~~~~~~~~~~-~~~~-----------------~-  332 (622)
                      ..     |+  .-++++|...|.+.+|.+.- . .     .......+...+..+. ++.+                 | 
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~  223 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI  223 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred             EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence            62     11  24677888889999998742 1 1     1111113334443332 3211                 1 


Q ss_pred             --CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEc-----CCCCEEEEEeCCCcEEEEecccccccCCCCCCCc
Q psy2110         333 --QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFA-----RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       333 --~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                        ..+++...+..++++...+.+.........-....+.+-     ..+..|++-..+|.|++|.+.         ..+.
T Consensus       224 ~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP---------~Lke  294 (395)
T PF08596_consen  224 SIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP---------SLKE  294 (395)
T ss_dssp             ---EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT---------T--E
T ss_pred             CcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC---------CchH
Confidence              123334445679999998887766555332233344452     356678888999999999998         3344


Q ss_pred             ceeeeccc--cceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         406 IQKLQDLV--NKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       406 ~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      +..+.-..  ........+++++|+.++..+.  ..+.++.+
T Consensus       295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp--sE~~l~sv  334 (395)
T PF08596_consen  295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP--SEIQLFSV  334 (395)
T ss_dssp             EEEEE-SS---HHHHTT-EE-TTS-EEEE-SS--SEEEEEEE
T ss_pred             hhcccCCCccccccccccEECCCCCEEEEeCc--ccEEEEEE
Confidence            44443321  1122345688999998876653  34555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.31  E-value=0.0012  Score=66.94  Aligned_cols=241  Identities=13%  Similarity=0.049  Sum_probs=130.3

Q ss_pred             EEEEcCCCCEEEEecC----CCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          86 KCCFSGDGEYVCAGSA----RQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~----~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ..++||||++||.+-.    +...|++.|+.+|+.+... .....                   ..+.|.+|++.|+...
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-------------------~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-------------------SSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-------------------EEEEECTTSSEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-------------------ceEEEeCCCCEEEEEE
Confidence            5789999999987532    2346999999999766432 22111                   2489999988776554


Q ss_pred             CCC-----------cEEEEecCCcccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEeC---C-CeEEEEEc
Q psy2110         161 NDG-----------RIVLWDFLTRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---D-GRIVLWDF  223 (622)
Q Consensus       161 ~dg-----------~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---d-g~i~iwd~  223 (622)
                      .+.           .|+.|.+.+....  ..+......         .....+..++|+++|+....   + ..+.+.++
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP---------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCC---------cEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            332           3777777665433  222222211         11467889999998876543   2 34777787


Q ss_pred             CCC----ceEEEeccCCcCee-EEEEcCCCCEEEEEeC---CCcEEEEECCCCcE---E-EEEeCCCCeEEEEEeCCCCe
Q psy2110         224 LTR----GIAKIISAHMHPVC-SISWSRNGYKIISAST---DNNVCIWDVLTGEC---E-QKYRFPSPILKVQFHPRNDH  291 (622)
Q Consensus       224 ~~~----~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~~  291 (622)
                      ..+    .....+..+...+. .+... .+.+++....   .+.|...++.....   . ..+.+...+.-..+...+.+
T Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  338 (414)
T PF02897_consen  260 DDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY  338 (414)
T ss_dssp             CCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred             cccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence            764    23344443333333 34333 3434433322   35677778776652   3 23334443333344445666


Q ss_pred             EEEEeeCCC--cEEEEEec-CCceeecccCCCCceEEEEEeeCCCEEEEEe----cCCeEEEEeCCCccEE
Q psy2110         292 MFLVCPMRH--AAVLVDTD-GDHQIVPIDEDSDLSIVASFDRRGQHVVTGN----SKGKVLVLSCPALELK  355 (622)
Q Consensus       292 ~~~~~~~~~--~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~  355 (622)
                      +++....++  .++++++. +...........+.+..+...+++..+....    .-++++.||+.+++..
T Consensus       339 Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  339 LVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            777776666  46777877 3333222222333344444445554443322    2256888888877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.29  E-value=0.00093  Score=66.16  Aligned_cols=72  Identities=22%  Similarity=0.407  Sum_probs=60.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                      +.+.+++++|+...|+.|+.||.|.+||...+...  +....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            56899999999999999999999999998765332  2234456789999999999999999999999998643

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.27  E-value=0.0048  Score=63.90  Aligned_cols=249  Identities=16%  Similarity=0.106  Sum_probs=139.9

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC---CCCEEEEee------CCCc
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK---RGTLLAVGC------NDGR  164 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~------~dg~  164 (622)
                      ..+++++.+ +.|.-.|..+|+.+...........                ..+.-+|   ++ .++++.      .+|.
T Consensus       121 ~~v~v~t~d-g~l~ALDa~TGk~~W~~~~~~~~~~----------------~~~tssP~v~~g-~Vivg~~~~~~~~~G~  182 (527)
T TIGR03075       121 GKVFFGTLD-ARLVALDAKTGKVVWSKKNGDYKAG----------------YTITAAPLVVKG-KVITGISGGEFGVRGY  182 (527)
T ss_pred             CEEEEEcCC-CEEEEEECCCCCEEeeccccccccc----------------ccccCCcEEECC-EEEEeecccccCCCcE
Confidence            455566554 8999999999999877653211000                0111111   33 444443      2688


Q ss_pred             EEEEecCCcccccccccccCCCc------------c------c-c--cccccceEEEEECCCCCEEEEEeCC-----C--
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEF------------D------G-A--LDCISLAVTCAFNKRGTLLAVGCND-----G--  216 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~------------~------~-~--~~~~~~v~~~~~s~~g~~l~~~~~d-----g--  216 (622)
                      |..+|.++|+.+-.+........            .      + .  ......=..+++.+...+++.+..+     +  
T Consensus       183 v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~  262 (527)
T TIGR03075       183 VTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHL  262 (527)
T ss_pred             EEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCC
Confidence            99999999877655443211100            0      0 0  0000011234677777777666522     2  


Q ss_pred             ---------eEEEEEcCCCceEEEeccCCcCeeE---------EEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         217 ---------RIVLWDFLTRGIAKIISAHMHPVCS---------ISWSRNGY---KIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       217 ---------~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                               .|.-.|++||+....++...+.+..         +....+|+   .++.+.++|.+++.|.++|+.+...+
T Consensus       263 r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~  342 (527)
T TIGR03075       263 RPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEP  342 (527)
T ss_pred             CCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecccc
Confidence                     5777899999988777643332222         22224666   67789999999999999998862211


Q ss_pred             ------------CC--CCe----------------------------EEEEEeCCCCeEEEEeeC---------------
Q psy2110         276 ------------FP--SPI----------------------------LKVQFHPRNDHMFLVCPM---------------  298 (622)
Q Consensus       276 ------------~~--~~v----------------------------~~~~~~~~~~~~~~~~~~---------------  298 (622)
                                  ..  .++                            ..++++|+...+++-...               
T Consensus       343 ~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g  422 (527)
T TIGR03075       343 FVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKG  422 (527)
T ss_pred             ccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCC
Confidence                        00  000                            114455544433222111               


Q ss_pred             -----------------CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC
Q psy2110         299 -----------------RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS  361 (622)
Q Consensus       299 -----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  361 (622)
                                       .+.+.-+|+.+++............... ..-.+..++.++.+|.++.+|.++|+.+..++..
T Consensus       423 ~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       423 AAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             CceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence                             1345566666665555443322211121 2224567778888999999999999999888754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.24  E-value=0.0037  Score=62.57  Aligned_cols=139  Identities=19%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--C
Q psy2110         201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--S  278 (622)
Q Consensus       201 ~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~  278 (622)
                      .++.+....+....++.+.+.+-...+.   +. ..+++..++.||+|+++|.-..+|.+.+....-.+....+...  .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence            3444555555555556666444322111   22 2468999999999999999999999999987766777666644  5


Q ss_pred             CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE
Q psy2110         279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                      ....+.|+-+.. +++.  ....+.++....           .   .+.|..++..++..-.|| ++|+.-...+.++..
T Consensus       261 ~p~~~~WCG~da-v~l~--~~~~l~lvg~~~-----------~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~V  322 (410)
T PF04841_consen  261 PPKQMAWCGNDA-VVLS--WEDELLLVGPDG-----------D---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRV  322 (410)
T ss_pred             CCcEEEEECCCc-EEEE--eCCEEEEECCCC-----------C---ceEEeccCceEEeccCCc-eEEEeCCceEEEEEC
Confidence            677788876542 1111  133344433221           1   123444444555556676 888876666666665


Q ss_pred             ecC
Q psy2110         359 KAS  361 (622)
Q Consensus       359 ~~~  361 (622)
                      ...
T Consensus       323 p~~  325 (410)
T PF04841_consen  323 PDS  325 (410)
T ss_pred             CHH
Confidence            543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.22  E-value=0.0016  Score=59.43  Aligned_cols=202  Identities=11%  Similarity=0.102  Sum_probs=115.4

Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC-CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED-SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--  353 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  353 (622)
                      ...+..++|.|+.+.++++....+.+..++.. ++.+..+... ....-.+++..++.++++.-.++.+.++++....  
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence            34699999999999999999999999888875 4444444332 3556778888888777776668999999883211  


Q ss_pred             ----EEEEEe-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec----cccceeeee
Q psy2110         354 ----LKASFK-----ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD----LVNKTMWKK  420 (622)
Q Consensus       354 ----~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  420 (622)
                          ....+.     .++..+-.++|++.++.|+++-...-..+|.+....    ....-.......    ........+
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP----GGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-----SS--EEEE-HHHH-HT--SS---E
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc----Cccceeeccccccccccceeccccc
Confidence                112222     345668999999998888888776667777776311    000000011111    111223467


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC--------CceeEEEECCCCCEEEEEeCCcEEE
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG--------ELLLDVVWHPVRPIIASISSGVVSL  484 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~s~~dg~v~i  484 (622)
                      ++++|....|..-+.....|.++| .+|+.+..+.-..+        ...-.|+|.++|.+.++.--+..++
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~  246 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR  246 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence            889997555544444588999999 56887766543221        1267899999997666654444444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.18  E-value=0.0017  Score=59.25  Aligned_cols=187  Identities=11%  Similarity=0.091  Sum_probs=106.8

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccC-cceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      +..++|+|+.+.|++.....+.|...+. +|+.++.+.-.. +..                 -.+++..++.++++.-.+
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~-----------------EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDY-----------------EGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSE-----------------EEEEE-STTEEEEEETTT
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCc-----------------eeEEEECCCEEEEEEcCC
Confidence            5679999998777776655688888886 478887765432 222                 488998888887777678


Q ss_pred             CcEEEEecCCccc-c-----cccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceEE--E
Q psy2110         163 GRIVLWDFLTRGI-A-----KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAK--I  231 (622)
Q Consensus       163 g~i~vw~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~---~~~~~--~  231 (622)
                      +.+.++++..... +     ..+.....      ......+-.++|.+.++.|+++-...-..+|.+..   .....  .
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRADVQKISLGFP------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             TEEEEEEE----TT--EEEEEEEE---S---------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             CcEEEEEEeccccccchhhceEEecccc------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            9999998844321 1     11111111      00112467899999988888887776677777653   11111  1


Q ss_pred             e------ccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCC----------CeEEEEEeCCCCeEEE
Q psy2110         232 I------SAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYRFPS----------PILKVQFHPRNDHMFL  294 (622)
Q Consensus       232 ~------~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~~  294 (622)
                      .      ......+.+++++|.. .+++....+..|..+| .+|+.+..+....          ....+++.++|. +++
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI  237 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI  237 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE
Confidence            1      1234567899999954 4555555677888899 7788877776332          578899999885 444


Q ss_pred             Ee
Q psy2110         295 VC  296 (622)
Q Consensus       295 ~~  296 (622)
                      ++
T Consensus       238 vs  239 (248)
T PF06977_consen  238 VS  239 (248)
T ss_dssp             EE
T ss_pred             Ec
Confidence            33

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.0013  Score=62.29  Aligned_cols=219  Identities=16%  Similarity=0.086  Sum_probs=134.8

Q ss_pred             EEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEE-EECCCCCEEEEEeCCCeEEEEEc
Q psy2110         146 TCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC-AFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       146 ~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      +..|.++.. ++.+--..+.|.-|+..+++... +....            .+.+. .+...+ .|+++.  ..+.+++.
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~------------~~~~~~~~d~~g-~Lv~~~--~g~~~~~~   92 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPG------------GFSSGALIDAGG-RLIACE--HGVRLLDP   92 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCC------------CcccceeecCCC-eEEEEc--cccEEEec
Confidence            345667666 34444556778888877653322 21111            12333 344444 444443  34666776


Q ss_pred             CCCceEEEecc-----CCcCeeEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEEeC-CCCeEEEEEe
Q psy2110         224 LTRGIAKIISA-----HMHPVCSISWSRNGYKIISAST-----------DNNVCIWDVLTGECEQKYRF-PSPILKVQFH  286 (622)
Q Consensus       224 ~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~  286 (622)
                      +++.....+..     .....+.+...|+|.+-++...           -|.|+.++. .+...+.+.. -...+.++||
T Consensus        93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S  171 (307)
T COG3386          93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS  171 (307)
T ss_pred             cCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence            65555333221     1245667888889876554333           133444443 4555555543 4566789999


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecC-------CceeecccCCCCceEEEEEeeCCCEEEEEecCC-eEEEEeCCCccEEEEE
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDG-------DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG-KVLVLSCPALELKASF  358 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~  358 (622)
                      ||++.++++-+..+.+.-+++..       ...........+..-.++.+.+|.+.+++...| .|.+|+.. ++++..+
T Consensus       172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            99998888888888898887752       111233333455666788889998886655554 89999988 9999999


Q ss_pred             ecCCCCEEEEEEc-CCCCEEEEEeC
Q psy2110         359 KASTTAIKSIEFA-RRGNCLLVNTG  382 (622)
Q Consensus       359 ~~~~~~i~~~~~s-~~~~~l~~~~~  382 (622)
                      ..+...+++++|- ++.+.|.+.+.
T Consensus       251 ~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         251 KLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ECCCCCCccceEeCCCcCEEEEEec
Confidence            9887888888884 55566655543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=0.0064  Score=61.78  Aligned_cols=241  Identities=12%  Similarity=0.126  Sum_probs=131.8

Q ss_pred             eEEEEECCCCCEEEEEe-CC----CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC-----------cE
Q psy2110         197 AVTCAFNKRGTLLAVGC-ND----GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN-----------NV  260 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-----------~i  260 (622)
                      +...+++|+|+++|.+- ..    ..++++|+.+++.+...-.. .....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            45678999999998763 23    44999999999766432111 1122399999998887765433           37


Q ss_pred             EEEECCCCcE--EEEEeC--CCC-eEEEEEeCCCCeEEEEeeCCC---cEEEEEecCC----ceeecccCCCCceEEEEE
Q psy2110         261 CIWDVLTGEC--EQKYRF--PSP-ILKVQFHPRNDHMFLVCPMRH---AAVLVDTDGD----HQIVPIDEDSDLSIVASF  328 (622)
Q Consensus       261 ~iwd~~~~~~--~~~~~~--~~~-v~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~----~~~~~~~~~~~~~~~~~~  328 (622)
                      +.|.+.+...  ...+..  ... ...+..+++++.+++......   .+++.++...    .....+......+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888877643  244442  223 668899999998887665544   4777777763    223333333333333222


Q ss_pred             eeCCCEEEEEe---cCCeEEEEeCCCcc---EEEEEecCCCC--EEEEEEcCCCCEEEEE-eCCC--cEEEEecc-cccc
Q psy2110         329 DRRGQHVVTGN---SKGKVLVLSCPALE---LKASFKASTTA--IKSIEFARRGNCLLVN-TGDR--LIRVYNHQ-EVLN  396 (622)
Q Consensus       329 ~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~s~~~~~l~~~-~~d~--~i~i~d~~-~~~~  396 (622)
                      ...+.+++...   ..+.|...++.+..   ....+..+...  +..+..  .+.+|+.. ..++  .|+++++. .   
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~---  359 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDG---  359 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-T---
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCC---
Confidence            33444444432   34577777877665   23345555553  444444  44555554 3444  47888877 2   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee---CCCCeEEEEECCCCeeE
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS---ARQHALYIWEKSVGNLV  451 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~---~~d~~i~iwd~~~~~~~  451 (622)
                             .....+.... ...+..+...++++.+....   ..-.+++.||+.+++..
T Consensus       360 -------~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  360 -------KESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             -------EEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             -------cEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence                   2222222221 22233344445555443322   12457889999988753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.13  E-value=0.0072  Score=57.47  Aligned_cols=227  Identities=16%  Similarity=0.221  Sum_probs=129.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCC-CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE-----------
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ-----------  272 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-----------  272 (622)
                      .++.|+.|+.+| +.+++... ....+...  ...|..+...++-+.|++-+ |+.++++++..-....           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            567899998888 89999832 33333332  23499999999877777665 5999999987654333           


Q ss_pred             ----EEeCCCCeEEEE--EeCCCCeEEEEeeCCCcEEEEEecCC-----ceeecccCCCCceEEEEEeeCCCEEEEEecC
Q psy2110         273 ----KYRFPSPILKVQ--FHPRNDHMFLVCPMRHAAVLVDTDGD-----HQIVPIDEDSDLSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       273 ----~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  341 (622)
                          .+.....+...+  -...+.. .++......+.+|.....     .....+.. ...+..++|.  ++.++.|..+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSR-RLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccce-EEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC
Confidence                122223444444  1123333 333444558888877653     23333333 3566677777  6678887766


Q ss_pred             CeEEEEeCCCccEEEEEecCC------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee
Q psy2110         342 GKVLVLSCPALELKASFKAST------------TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL  409 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  409 (622)
                      + ..+.|+.++.....+....            .++..+... ++.+|++ . +..-.+.|...        .+.....+
T Consensus       158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G--------~~~r~~~i  225 (275)
T PF00780_consen  158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNG--------EPSRKSTI  225 (275)
T ss_pred             c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-e-cceEEEEcCCC--------CcCcccEE
Confidence            5 8889998776554432111            223333333 3454443 2 33333334331        11111111


Q ss_pred             eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         410 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       410 ~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      .-   ......+++  ...||++...  +.|.||++.++++++.+..+.
T Consensus       226 ~W---~~~p~~~~~--~~pyli~~~~--~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  226 QW---SSAPQSVAY--SSPYLIAFSS--NSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             Ec---CCchhEEEE--ECCEEEEECC--CEEEEEECcCCcEEEEEECCC
Confidence            10   111123344  3458877663  569999999999999998765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.12  E-value=0.00084  Score=67.08  Aligned_cols=217  Identities=15%  Similarity=0.167  Sum_probs=109.7

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      +..+.++|+|++++++ .+|...|+.....+...  .              ......+|.+.++ +|+-...+.|.++.-
T Consensus        35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~--------------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--F--------------GSGLSFVWSSRNR-YAVLESSSTIKIYKN   96 (443)
T ss_dssp             -SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--E--------------EE-SEEEE-TSSE-EEEE-TTS-EEEEET
T ss_pred             CeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--c--------------CceeEEEEecCcc-EEEEECCCeEEEEEc
Confidence            3699999999999985 46788888733221111  1              1234678888555 566666888999743


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      -+......++.. ..+..+-.   |..|+..+. +.|.+||+.+++.++.+.... |..+.|++++..+++++  +..+.
T Consensus        97 ~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t--~~~i~  168 (443)
T PF04053_consen   97 FKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT--KDSIY  168 (443)
T ss_dssp             TEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE---S-SEE
T ss_pred             CccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe--CCeEE
Confidence            222222233321 12333332   777777664 489999999999999998664 89999999998766665  44566


Q ss_pred             EEEecCC-----------ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC
Q psy2110         304 LVDTDGD-----------HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR  372 (622)
Q Consensus       304 ~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  372 (622)
                      +++....           ........-...|.+.+|..+  .++-.+.. .++-  +..|+ ...+..-..++.=+.+.+
T Consensus       169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~  242 (443)
T PF04053_consen  169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLP  242 (443)
T ss_dssp             EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEET
T ss_pred             EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEc
Confidence            5554322           011112221345556666554  33332333 4444  22232 112222235566667777


Q ss_pred             CCCEEEEEeCCCcEEEEecc
Q psy2110         373 RGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       373 ~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ..+.+.....|+.|..+.++
T Consensus       243 ~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  243 KENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             TTTEEEEE-TT--EEEEE--
T ss_pred             cCCEEEEEECCCCEEEEEEC
Confidence            77778888888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.07  E-value=0.00077  Score=66.69  Aligned_cols=75  Identities=15%  Similarity=0.197  Sum_probs=58.7

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110         360 ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA  439 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~  439 (622)
                      .....+.+.+++|+...|+.|+.||.|.+||...           .+..+.  ......+.++|+|+|..+++|+. .|.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-----------~~t~~~--ka~~~P~~iaWHp~gai~~V~s~-qGe  322 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-----------GVTLLA--KAEFIPTLIAWHPDGAIFVVGSE-QGE  322 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCC-----------Ceeeee--eecccceEEEEcCCCcEEEEEcC-Cce
Confidence            4567889999999999999999999999999873           112221  11122356799999999999997 899


Q ss_pred             EEEEECCCC
Q psy2110         440 LYIWEKSVG  448 (622)
Q Consensus       440 i~iwd~~~~  448 (622)
                      +.+||+.-.
T Consensus       323 lQ~FD~ALs  331 (545)
T PF11768_consen  323 LQCFDMALS  331 (545)
T ss_pred             EEEEEeecC
Confidence            999997643

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.0041  Score=62.29  Aligned_cols=205  Identities=9%  Similarity=0.078  Sum_probs=112.2

Q ss_pred             cEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-------CCCCceEEEEEee
Q psy2110         259 NVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-------EDSDLSIVASFDR  330 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~  330 (622)
                      .|+||+.. |+.+..+. ..+.+.++.|+.+..  +++-..+|.++++|+.... ...+.       .....+....+..
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~  137 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK  137 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence            47888744 55666555 337899999988654  4555689999999987544 11111       1111111222333


Q ss_pred             CCCEEEEEecCCeEEEEeCCCcc-EEEEEe---c-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCC
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALE-LKASFK---A-------STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK  399 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~  399 (622)
                      +|  ++.-..++.+.+.+--... ....+.   .       +........++.+....+....++.+.+.+-...     
T Consensus       138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-----  210 (410)
T PF04841_consen  138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-----  210 (410)
T ss_pred             CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence            44  2333344545444322211 111111   0       1010001234445555555555566664443310     


Q ss_pred             CCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeC
Q psy2110         400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS  479 (622)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~d  479 (622)
                          ..      .....++..+++||+|++||.-.. +|.+.|.+..-.+.+..+..........+.|+-+...++.- .
T Consensus       211 ----~~------i~~~~~i~~iavSpng~~iAl~t~-~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~-~  278 (410)
T PF04841_consen  211 ----KQ------IDSDGPIIKIAVSPNGKFIALFTD-SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW-E  278 (410)
T ss_pred             ----cc------ccCCCCeEEEEECCCCCEEEEEEC-CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe-C
Confidence                00      112346788999999999999886 88999998776666666665544447889998776544443 3


Q ss_pred             CcEEEee
Q psy2110         480 GVVSLWA  486 (622)
Q Consensus       480 g~v~iw~  486 (622)
                      ..+.+..
T Consensus       279 ~~l~lvg  285 (410)
T PF04841_consen  279 DELLLVG  285 (410)
T ss_pred             CEEEEEC
Confidence            3444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=0.0035  Score=56.23  Aligned_cols=240  Identities=13%  Similarity=0.113  Sum_probs=141.5

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCc-EEEEECCCCcEEEEEeCC---CCeEEEEEeCCCCeEEEEe----eCCCcEEEEEecC
Q psy2110         239 VCSISWSRN-GYKIISASTDNN-VCIWDVLTGECEQKYRFP---SPILKVQFHPRNDHMFLVC----PMRHAAVLVDTDG  309 (622)
Q Consensus       239 v~~~~~s~~-~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~----~~~~~i~~~d~~~  309 (622)
                      ...++++|. ..-++.+-.-|+ ..++|....+...++...   .-.-.=.|||+|..++++-    ...|.|-+||.+.
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            345778874 345666666664 678898888766665421   1223347999999766653    2346788999985


Q ss_pred             C-ceeecccCCCCceEEEEEeeCCCEEEEEecC------------------CeEEEEeCCCccEEEEEe----cCCCCEE
Q psy2110         310 D-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSK------------------GKVLVLSCPALELKASFK----ASTTAIK  366 (622)
Q Consensus       310 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~----~~~~~i~  366 (622)
                      . ..+..+..|.-....+.+.+||+.++.++..                  -++.+.|..+++++.+..    .+.-.|+
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence            4 5667777888778889999999999886431                  124445555565554332    3456688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc-----ceeeeeEEEcCCCCeEEEeeCCCCeEE
Q psy2110         367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN-----KTMWKKCCFSGDGEYVCAGSARQHALY  441 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~d~~i~  441 (622)
                      .++..+||..++-+-..|.-.  |+...  .+.....++++.+.....     ...+-+++...+..+++..+-..+...
T Consensus       230 Hld~g~dgtvwfgcQy~G~~~--d~ppL--vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         230 HLDIGRDGTVWFGCQYRGPRN--DLPPL--VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             eeeeCCCCcEEEEEEeeCCCc--cCCcc--eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            888888887544332111000  00000  000011222322222111     123446777777777777776677899


Q ss_pred             EEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110         442 IWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWA  486 (622)
Q Consensus       442 iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~  486 (622)
                      +||..+|..+..-.-..   ...++-. .+-+.+|.++|.+.++.
T Consensus       306 i~da~tG~vv~~a~l~d---aaGva~~-~~gf~vssg~G~~~~~s  346 (366)
T COG3490         306 IWDAATGAVVSEAALPD---AAGVAAA-KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEcCCCcEEecccccc---cccceec-cCceEEecCCceEEecc
Confidence            99999998765543322   2223222 23466666688888774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.04  E-value=0.00081  Score=70.96  Aligned_cols=143  Identities=13%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             CCEEEEE-eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCC------CeEEEEeeCCCcEEEEEecCCc-eeeccc--
Q psy2110         248 GYKIISA-STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRN------DHMFLVCPMRHAAVLVDTDGDH-QIVPID--  317 (622)
Q Consensus       248 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~i~~~d~~~~~-~~~~~~--  317 (622)
                      .++|+.. .....|+-.|++.|+.+..+.....+.-..+.|+.      ..-.+.|-.+..+..||.|-.. .+....  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3344433 34578999999999999999855444334444432      2235677788899999998542 222111  


Q ss_pred             --CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         318 --EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       318 --~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                        .......|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||++++..+. ..|.+++..
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence              123345566666665 8899999999999995444444556677899999999999999887774 466676653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.02  E-value=0.0052  Score=58.29  Aligned_cols=226  Identities=14%  Similarity=0.160  Sum_probs=129.9

Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc--C
Q psy2110         242 ISWSRNGYKII-SASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID--E  318 (622)
Q Consensus       242 ~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~  318 (622)
                      ..|.++...|+ +--..+.|.-|+..+++ .+.+..+..+.++..-..+. .++++.  ..+.+++......+..+.  .
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCCcccceeecCCC-eEEEEc--cccEEEeccCCceeEEecccc
Confidence            34666666443 44445678888877554 34445555555555544444 344442  334455544333311111  1


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEec-----------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C
Q psy2110         319 ---DSDLSIVASFDRRGQHVVTGNS-----------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-D  383 (622)
Q Consensus       319 ---~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d  383 (622)
                         ...........|+|.+.+....           -|.++.++. .+..++.+..+-..-++|+||||++.|..+.. .
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence               1123346778888888776444           144555554 56666666665566689999999988887754 5


Q ss_pred             CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCcee
Q psy2110         384 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLL  463 (622)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  463 (622)
                      +.|..|++..  ..+..........+.  ......-.++...+|.+-+++....+.|.+|+.. |+++..+..+... ++
T Consensus       185 ~~i~r~~~d~--~~g~~~~~~~~~~~~--~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~-~t  258 (307)
T COG3386         185 NRIHRYDLDP--ATGPIGGRRGFVDFD--EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR-PT  258 (307)
T ss_pred             CeEEEEecCc--ccCccCCcceEEEcc--CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC-Cc
Confidence            7888888763  111111111111111  1112223567888888776554423489999988 9999999888655 88


Q ss_pred             EEEEC-CCCCEEEEEe
Q psy2110         464 DVVWH-PVRPIIASIS  478 (622)
Q Consensus       464 ~v~~s-p~~~~l~s~~  478 (622)
                      +++|- |+.+.|+..+
T Consensus       259 ~~~FgG~~~~~L~iTs  274 (307)
T COG3386         259 NPAFGGPDLNTLYITS  274 (307)
T ss_pred             cceEeCCCcCEEEEEe
Confidence            88884 4555555444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.96  E-value=0.003  Score=61.55  Aligned_cols=214  Identities=13%  Similarity=0.115  Sum_probs=124.4

Q ss_pred             CcEEEEECCCCcEEEEEe--CCCCeEEEEE---eCC---CCeEEEEeeC---------C-CcEEEEEecCC----ceee-
Q psy2110         258 NNVCIWDVLTGECEQKYR--FPSPILKVQF---HPR---NDHMFLVCPM---------R-HAAVLVDTDGD----HQIV-  314 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~---~~~~~~~~~~---------~-~~i~~~d~~~~----~~~~-  314 (622)
                      ..|++.|..+.+.+..+.  ....+.+++.   ..+   ...++++|+.         . |.+.++++...    ..+. 
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            358889988888877766  3344554433   322   1456666532         2 88999999873    2222 


Q ss_pred             -cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-EEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         315 -PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE-LKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       315 -~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                       ......+.+++++.- ++ +++++. .+.|.+|++...+ ....-. .....+.++...  +++++++..-..+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence             222335667776654 34 455544 4689999988777 443322 223456666655  558999988888888866


Q ss_pred             ccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC-------C--eeEEEEecCCCCce
Q psy2110         392 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-------G--NLVKILHGTKGELL  462 (622)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~-------~--~~~~~~~~~~~~~v  462 (622)
                      +.        ....+..+........+.++.|-++++.++++.. +|.+.++....       +  ++.....-|-+..|
T Consensus       157 ~~--------~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v  227 (321)
T PF03178_consen  157 DE--------ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK-DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV  227 (321)
T ss_dssp             ET--------TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET-TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred             Ec--------cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC-CCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence            52        2233444444444556678888877777878876 89999998652       2  33434444555558


Q ss_pred             eEE---EECCC--CC------EEEEEe-CCcEEEe
Q psy2110         463 LDV---VWHPV--RP------IIASIS-SGVVSLW  485 (622)
Q Consensus       463 ~~v---~~sp~--~~------~l~s~~-dg~v~iw  485 (622)
                      +++   ++.|.  +.      .++.++ +|.|..-
T Consensus       228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            888   66662  22      355555 9988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.95  E-value=0.0019  Score=63.72  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=132.5

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEeccccceec-----cc----CceEEeecCCceEEEeechhhhhcCCCCCCccch
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-----SR----GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ   73 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~-----~~----~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~   73 (622)
                      +|+++.|+++..-||.|...|.|.||.....+...     ..    ...+-  ..++.-.+-|+.............+..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFS--LNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S----GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccc--ccCCCcceEEehhhCCcccccccCchh
Confidence            58999999998888889999999999875433221     00    00000  011122334444332221111111222


Q ss_pred             hhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--
Q psy2110          74 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--  151 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--  151 (622)
                      .+.  ...+.+++++.| |=-++|.|..+ |.+.|.|++....+..-.-...         .........|+++.|+.  
T Consensus        81 l~~--~~~g~vtal~~S-~iGFvaigy~~-G~l~viD~RGPavI~~~~i~~~---------~~~~~~~~~vt~ieF~vm~  147 (395)
T PF08596_consen   81 LLD--AKQGPVTALKNS-DIGFVAIGYES-GSLVVIDLRGPAVIYNENIRES---------FLSKSSSSYVTSIEFSVMT  147 (395)
T ss_dssp             EE-----S-SEEEEEE--BTSEEEEEETT-SEEEEEETTTTEEEEEEEGGG-----------T-SS----EEEEEEEEEE
T ss_pred             hee--ccCCcEeEEecC-CCcEEEEEecC-CcEEEEECCCCeEEeecccccc---------ccccccccCeeEEEEEEEe
Confidence            222  225678888887 55688888865 9999999987777665221110         00111122345666653  


Q ss_pred             ---CC---CEEEEeeCCCcEEEEecCC---cccccccccccCCCcccccccccceEEE-EECCC----------------
Q psy2110         152 ---RG---TLLAVGCNDGRIVLWDFLT---RGIAKIISAHMHPEFDGALDCISLAVTC-AFNKR----------------  205 (622)
Q Consensus       152 ---d~---~~l~s~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~----------------  205 (622)
                         |+   -.|++|...|.+.+|.+.-   +.....+.... .      ...+.+..+ .|+.+                
T Consensus       148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~------~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~  220 (395)
T PF08596_consen  148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-T------NHDSPILSIIPINADTGESALATISAMQGLS  220 (395)
T ss_dssp             -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---------SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred             cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-c------cCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence               33   3788999999999998752   11111111111 0      000112222 12111                


Q ss_pred             -C---CEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc-----CCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q psy2110         206 -G---TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS-----RNGYKIISASTDNNVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       206 -g---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  276 (622)
                       |   ..+++...+..++++...+.+.........-....+.+-     ..+..|++-..+|.++++.+..-+.+..+..
T Consensus       221 ~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  221 KGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             GT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             cCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence             0   123344457789999988776655444222233344442     3566788889999999999999888887774


Q ss_pred             CC-----CeEEEEEeCCCCeEEE
Q psy2110         277 PS-----PILKVQFHPRNDHMFL  294 (622)
Q Consensus       277 ~~-----~v~~~~~~~~~~~~~~  294 (622)
                      ..     .+....++++|+.++.
T Consensus       301 ~~~~d~~~~~~ssis~~Gdi~~~  323 (395)
T PF08596_consen  301 PPPLDSRRLSSSSISRNGDIFYW  323 (395)
T ss_dssp             SS---HHHHTT-EE-TTS-EEEE
T ss_pred             CCccccccccccEECCCCCEEEE
Confidence            32     2345566777774333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008|consensus

Probab=97.93  E-value=5.1e-06  Score=81.68  Aligned_cols=193  Identities=14%  Similarity=0.185  Sum_probs=125.0

Q ss_pred             eEEEEECC--CCCEEEEEeCCCeEEEEEcCCCce--EEEeccCCcCeeEEEEcC-CCCEEEEEeC----CCcEEEEECCC
Q psy2110         197 AVTCAFNK--RGTLLAVGCNDGRIVLWDFLTRGI--AKIISAHMHPVCSISWSR-NGYKIISAST----DNNVCIWDVLT  267 (622)
Q Consensus       197 v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~s~~~----d~~i~iwd~~~  267 (622)
                      +.|+++.-  +...+++|..+|.|.+-.+....-  .....+|..+.++++|++ |.+.||.|-.    |..+.|||+.+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s  138 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS  138 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence            45555443  335788999999999988764322  334567888999999998 6667777632    56799999987


Q ss_pred             C--cEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceEEEEEee-CCCEEEEEe
Q psy2110         268 G--ECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDR-RGQHVVTGN  339 (622)
Q Consensus       268 ~--~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  339 (622)
                      +  .+.....    ......+++|..+. .++++|.....+.++|++.. .....+  ....+..+.++| .+.++++-.
T Consensus       139 ~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  139 LLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc
Confidence            6  2222111    23355688888544 47888888889999999843 111111  223445567778 666776654


Q ss_pred             cCCeEEEEe-CCCcc-EEEEEecC----CCCEEEEEEcCCCC-EEEEEeC-CCcEEEEeccc
Q psy2110         340 SKGKVLVLS-CPALE-LKASFKAS----TTAIKSIEFARRGN-CLLVNTG-DRLIRVYNHQE  393 (622)
Q Consensus       340 ~dg~i~i~d-~~~~~-~~~~~~~~----~~~i~~~~~s~~~~-~l~~~~~-d~~i~i~d~~~  393 (622)
                       ||.|.+|| .++-+ ++..+...    ...+..++|+|... .+++.+. .++|++|++..
T Consensus       216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence             89999999 43332 22222222    23488999999654 3555554 57899999875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.92  E-value=0.0084  Score=58.40  Aligned_cols=174  Identities=11%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             CeEEEEEcCCCceEEEecc-CCcCeeEE---EEcCC----CCEEEEEeC----------CCcEEEEECCCC-----c--E
Q psy2110         216 GRIVLWDFLTRGIAKIISA-HMHPVCSI---SWSRN----GYKIISAST----------DNNVCIWDVLTG-----E--C  270 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~-~~~~v~~~---~~s~~----~~~l~s~~~----------d~~i~iwd~~~~-----~--~  270 (622)
                      ..|++.|..+.+.+..+.- ....+.++   .+..+    ..+|+.|..          .|.|.++++...     +  .
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3578888777776654432 12334433   34332    356776643          288999999884     2  2


Q ss_pred             EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         271 EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      +.....+++|++++-.  +..++++  .+..+.+|++.....+.........+........+.++++|.....+.++...
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEe--ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            3334478899999877  3333333  35889999998776232222222222334444557799999888778877443


Q ss_pred             C-ccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         351 A-LELKASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       351 ~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      . ...+..+.  .....++++.|-++++.++++..+|.+.++....
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            2 22222222  3345688888886667899999999999998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.91  E-value=0.0024  Score=62.72  Aligned_cols=97  Identities=21%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEE---EecCC-c----ccccccccccCCCcccccccccceEEEEE--------CCCCCEE
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVL---WDFLT-R----GIAKIISAHMHPEFDGALDCISLAVTCAF--------NKRGTLL  209 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~v---w~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~g~~l  209 (622)
                      .++.+|++.+||.+..+..+.+   |+... +    .......+.....   ...++..+.++.+        .+|...+
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~---~~e~ITsi~clpl~s~~~s~~~~dw~~I   82 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDE---PGECITSILCLPLSSQKRSTGGPDWTCI   82 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCC---CCCEEEEEEEEEeecccccCCCCCcEEE
Confidence            6788999999999987776665   54321 1    1111111111111   0123344555555        2456789


Q ss_pred             EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110         210 AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR  246 (622)
Q Consensus       210 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  246 (622)
                      ++|..+|.|++|.. +|..+..-.-|..+|..+.+..
T Consensus        83 ~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   83 AVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             EEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999999985 6666655556788888887743

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.89  E-value=0.024  Score=53.83  Aligned_cols=236  Identities=19%  Similarity=0.239  Sum_probs=127.7

Q ss_pred             CCCCEEEEecCCCCeEEEEEcC-CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy2110          91 GDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  169 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~  169 (622)
                      ..++.|+.|+.+ | +++++.. ............  |                 ..+...|+-+.|++-+ |+.+.+++
T Consensus         5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~--I-----------------~ql~vl~~~~~llvLs-d~~l~~~~   62 (275)
T PF00780_consen    5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSS--I-----------------TQLSVLPELNLLLVLS-DGQLYVYD   62 (275)
T ss_pred             cCCCEEEEEECC-C-EEEEEecCCccceeEeecce--E-----------------EEEEEecccCEEEEEc-CCccEEEE
Confidence            357888889754 6 8999983 222222222211  4                 5888888777766665 49999999


Q ss_pred             cCCccccccccc---ccCCCcccccccccceEEEE---ECCCCCEEEEEeCCCeEEEEEcCCC-----ceEEEeccCCcC
Q psy2110         170 FLTRGIAKIISA---HMHPEFDGALDCISLAVTCA---FNKRGTLLAVGCNDGRIVLWDFLTR-----GIAKIISAHMHP  238 (622)
Q Consensus       170 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~---~s~~g~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~  238 (622)
                      +..-........   .........+.....+...+   -......|+++ ....|.+|.....     ...+.+.- ...
T Consensus        63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~  140 (275)
T PF00780_consen   63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDP  140 (275)
T ss_pred             chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-CCC
Confidence            877543332110   00000000111111233333   12233455544 4558888887653     34444443 477


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------------CCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-------------SPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      +.+++|.  ++.|+.|.. +...+.|+.++.....+...             .++..+.. +++. +++ +. +..-.+.
T Consensus       141 ~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e-~Ll-~~-~~~g~fv  213 (275)
T PF00780_consen  141 PSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNE-FLL-CY-DNIGVFV  213 (275)
T ss_pred             cEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCce-EEE-Ee-cceEEEE
Confidence            8899998  556777765 45889999987766555321             12222333 3333 333 22 3334444


Q ss_pred             EecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC
Q psy2110         306 DTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS  361 (622)
Q Consensus       306 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  361 (622)
                      +..+.... ..+.- ......+++.  ..++++.+.+ .|.||++.++++++.+...
T Consensus       214 ~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  214 NKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             cCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence            54433221 11211 2233344442  3477776654 5999999999999888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.017  Score=51.97  Aligned_cols=233  Identities=15%  Similarity=0.168  Sum_probs=139.1

Q ss_pred             EEEEcCCCC-EEEEeeCCCc-EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----CCeE
Q psy2110         146 TCAFNKRGT-LLAVGCNDGR-IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----DGRI  218 (622)
Q Consensus       146 ~~~~s~d~~-~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i  218 (622)
                      .++|+|... -++.+-.-|+ ..++|....+....+......++.++         =.|||||.+|+..-.     .|.|
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH---------Gvfs~dG~~LYATEndfd~~rGVi  142 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH---------GVFSPDGRLLYATENDFDPNRGVI  142 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc---------cccCCCCcEEEeecCCCCCCCceE
Confidence            677777654 4455544444 66889888877776665544433222         279999999987644     3779


Q ss_pred             EEEEcCCC-ceEEEeccCCcCeeEEEEcCCCCEEEEEeC------C------------CcEEEEECCCCcEEEEEeC---
Q psy2110         219 VLWDFLTR-GIAKIISAHMHPVCSISWSRNGYKIISAST------D------------NNVCIWDVLTGECEQKYRF---  276 (622)
Q Consensus       219 ~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d------------~~i~iwd~~~~~~~~~~~~---  276 (622)
                      -|||...+ +.+..+..|.-.-..+.|.+||+.++.+..      |            -++.+.|..+|+.+.+...   
T Consensus       143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~  222 (366)
T COG3490         143 GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS  222 (366)
T ss_pred             EEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence            99998743 345667777777788999999999887743      0            1244555556665554442   


Q ss_pred             --CCCeEEEEEeCCCCeEEEEeeCCCc-----EEEEEecCCceeecccC-------CCCceEEEEEeeCCCEEEEEec-C
Q psy2110         277 --PSPILKVQFHPRNDHMFLVCPMRHA-----AVLVDTDGDHQIVPIDE-------DSDLSIVASFDRRGQHVVTGNS-K  341 (622)
Q Consensus       277 --~~~v~~~~~~~~~~~~~~~~~~~~~-----i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~-d  341 (622)
                        .-.+..+...++|. +++.+...|.     ..+--...++.+..+..       ....+-+++.+.+..+++..+- .
T Consensus       223 l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~G  301 (366)
T COG3490         223 LRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRG  301 (366)
T ss_pred             hhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCC
Confidence              24577788888776 3444433221     11111112222222211       1234556777765556555444 4


Q ss_pred             CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         342 GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +...+||..++..+..-...  ....++-  ...-+++.+.+|.+.++.-.
T Consensus       302 N~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         302 NRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             CeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecccc
Confidence            56788999999877644322  1222332  33447777778888887443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.86  E-value=0.0016  Score=67.77  Aligned_cols=185  Identities=14%  Similarity=0.186  Sum_probs=103.9

Q ss_pred             ceEEEEECCCCCEEEEEe------CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC------------
Q psy2110         196 LAVTCAFNKRGTLLAVGC------NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD------------  257 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------------  257 (622)
                      .+...+++|+|+.++...      .++.-.+|-...+...+.+... ...+...|+|||+.|++....            
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            467889999999887765      2443344433323222333322 248889999999888777532            


Q ss_pred             CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEE---EEecCCc-ee---eccc-CCCCceEEEEEe
Q psy2110         258 NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVL---VDTDGDH-QI---VPID-EDSDLSIVASFD  329 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~---~d~~~~~-~~---~~~~-~~~~~~~~~~~~  329 (622)
                      +.+.+.++..++..+  .....|..+.|+|||.++++..  ++.+++   .....+. .+   ..+. .....+..+.|.
T Consensus       430 gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        430 GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            234434554444333  4466899999999999888876  466666   3322332 11   1111 222335678899


Q ss_pred             eCCCEEEEEecCCeEEEEeCC-CccEEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         330 RRGQHVVTGNSKGKVLVLSCP-ALELKASFKA--STTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       330 ~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      .++.++ ++..++...+|.+. .|.....+..  ....+..++-+++  .++....++.+.+
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            998855 54444434444432 1222222222  2455666666653  4555555664443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.76  E-value=0.013  Score=56.65  Aligned_cols=214  Identities=13%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             ccccceeEEEEcC------CCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          79 VNKTMWKKCCFSG------DGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        79 ~~~~~~~~~~~sp------~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      .||.++++|+-++      +.++|+..+-+.+.|+|.|+.+.    ++.+.+...  .+.        .....+..+.+.
T Consensus        67 lHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~--ev~--------~k~g~s~PHT~H  136 (461)
T PF05694_consen   67 LHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPE--EVF--------EKTGLSRPHTVH  136 (461)
T ss_dssp             B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HH--HHH--------HHH-EEEEEEEE
T ss_pred             cccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHH--HHH--------hhcCCCCCceee
Confidence            4666776553233      56788888877799999998743    344444320  000        001112224555


Q ss_pred             EcCCCCEEEEeeC------CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe---------
Q psy2110         149 FNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC---------  213 (622)
Q Consensus       149 ~s~d~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------  213 (622)
                      .-|+|..++++-.      -|.+.+.|-++.+............        ..-..+-|.|..+.++++.         
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~--------~~gYDfw~qpr~nvMiSSeWg~P~~~~~  208 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQ--------PFGYDFWYQPRHNVMISSEWGAPSMFEK  208 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT--------------EEEETTTTEEEE-B---HHHHTT
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCC--------CCCCCeEEcCCCCEEEEeccCChhhccc
Confidence            6678888887522      2557788877665555444322211        2346778888888888763         


Q ss_pred             -----------CCCeEEEEEcCCCceEEEeccCC--cCeeEEEEcCC--CCE-EEEEeCCCcEEEEEC-CCCcEE--EEE
Q psy2110         214 -----------NDGRIVLWDFLTRGIAKIISAHM--HPVCSISWSRN--GYK-IISASTDNNVCIWDV-LTGECE--QKY  274 (622)
Q Consensus       214 -----------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~--~~~-l~s~~~d~~i~iwd~-~~~~~~--~~~  274 (622)
                                 ...++.+||+.+++.++++.-..  .....+.|..+  ..+ ++.+.-.++|..|-- ..++..  +.+
T Consensus       209 Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi  288 (461)
T PF05694_consen  209 GFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI  288 (461)
T ss_dssp             ---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred             CCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence                       24679999999999998887432  23556777654  333 343444555655543 344321  111


Q ss_pred             eC--------------------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         275 RF--------------------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       275 ~~--------------------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      ..                    +.-++.+.+|.|.+.+.+++-..|.++.||+...
T Consensus       289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            11                    2447899999999999999999999999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1008|consensus

Probab=97.75  E-value=1e-05  Score=79.59  Aligned_cols=195  Identities=15%  Similarity=0.258  Sum_probs=126.2

Q ss_pred             CeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCCce--eecccCCCCceEEEEEeeC-CCEEEEEe----cCCeEEEEeCC
Q psy2110         279 PILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRR-GQHVVTGN----SKGKVLVLSCP  350 (622)
Q Consensus       279 ~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~~----~dg~i~i~d~~  350 (622)
                      .+.++++.-+. +-++++|..+|.|.+-..+..+-  ......+....++++|++- ..+||+|-    .+..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            34455544333 35788888899999988876543  3445566778889999884 46666663    34579999998


Q ss_pred             Cc--cEEE--EEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC
Q psy2110         351 AL--ELKA--SFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG  425 (622)
Q Consensus       351 ~~--~~~~--~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  425 (622)
                      ++  .+..  .|.. ......+++|..+.+++++|...+.+.++|++...        .....+    +...+..+..+|
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--------~~~~sv----nTk~vqG~tVdp  205 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--------DSVSSV----NTKYVQGITVDP  205 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--------hhhhhh----hhhhcccceecC
Confidence            76  2222  1222 33455688999888888899888899999998311        111111    111223457788


Q ss_pred             -CCCeEEEeeCCCCeEEEEEC-CC-CeeEEEEec----CCCCceeEEEECCCCC-EEEEEe--CCcEEEeecC
Q psy2110         426 -DGEYVCAGSARQHALYIWEK-SV-GNLVKILHG----TKGELLLDVVWHPVRP-IIASIS--SGVVSLWAQN  488 (622)
Q Consensus       426 -dg~~l~~~~~~d~~i~iwd~-~~-~~~~~~~~~----~~~~~v~~v~~sp~~~-~l~s~~--dg~v~iw~~~  488 (622)
                       .+.|+++-.  ++.|.+||. .. ..++..+..    .... +..++|+|... .+++..  .++|+++++.
T Consensus       206 ~~~nY~cs~~--dg~iAiwD~~rnienpl~~i~~~~N~~~~~-l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  206 FSPNYFCSNS--DGDIAIWDTYRNIENPLQIILRNENKKPKQ-LFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCCCceeccc--cCceeeccchhhhccHHHHHhhCCCCcccc-eeeEEeccCCcchhhhhccCcceEEEeccc
Confidence             778887665  789999993 21 222222211    1112 88999999876 666666  5899999985

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.72  E-value=0.0031  Score=66.75  Aligned_cols=142  Identities=12%  Similarity=0.090  Sum_probs=101.4

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcC-eeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc--EEE---
Q psy2110         205 RGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHP-VCSISWSR-----NGYKIISASTDNNVCIWDVLTGE--CEQ---  272 (622)
Q Consensus       205 ~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~--~~~---  272 (622)
                      +.++|+.. .....|+-.|++.|+.+..+..|... |..++-..     .....+.|-.++.+..||.+-..  ++.   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444443 34577999999999999999887654 55544321     12345667778899999998532  222   


Q ss_pred             -EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         273 -KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       273 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                       .+.......|++-+.+|  .+++|+.+|.|++||.-+.+....+.+-..+|..+..+.||++|++.+.. .+.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence             22244567777777766  58999999999999976655556677778999999999999999886655 4666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640|consensus

Probab=97.70  E-value=0.00023  Score=70.48  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      ..+..+.|+|.-.++|.+..+|.+.+..++ .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            457889999999999999999999999987 677788887777777 999999999999999999999999999988887


Q ss_pred             --EeCCCCeEEEEEeC
Q psy2110         274 --YRFPSPILKVQFHP  287 (622)
Q Consensus       274 --~~~~~~v~~~~~~~  287 (622)
                        +....+|.++-|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence              44667888888874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.69  E-value=0.011  Score=61.80  Aligned_cols=149  Identities=12%  Similarity=0.092  Sum_probs=88.9

Q ss_pred             cCeeEEEEcCCCCEEEEEe------CCC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---------
Q psy2110         237 HPVCSISWSRNGYKIISAS------TDN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---------  299 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------  299 (622)
                      ..+.+.+++|+|+.++...      .|+  .|.+++. .+.. +.+..........|+|+|..+.++...+         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4678899999999888766      243  4555564 2333 3333333488899999988666554322         


Q ss_pred             --CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEE---EeCCCccE-E---EEEec-CCCCEEEEE
Q psy2110         300 --HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV---LSCPALEL-K---ASFKA-STTAIKSIE  369 (622)
Q Consensus       300 --~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~-~~~~i~~~~  369 (622)
                        +.+.+.++..+....   .....+..+.|||||..++... +|.|++   -....|.. +   ..+.. -...+.++.
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence              233333333322211   2245689999999999988765 467777   44444541 1   11222 223468899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecc
Q psy2110         370 FARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       370 ~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |..++.+ +++..++.-.+|.+.
T Consensus       504 W~~~~~L-~V~~~~~~~~v~~v~  525 (591)
T PRK13616        504 WRTGDSL-VVGRSDPEHPVWYVN  525 (591)
T ss_pred             EecCCEE-EEEecCCCCceEEEe
Confidence            9999985 455554444445443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.68  E-value=0.017  Score=55.93  Aligned_cols=230  Identities=16%  Similarity=0.131  Sum_probs=108.6

Q ss_pred             CCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------CCCeEEEEEcC
Q psy2110         152 RGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------NDGRIVLWDFL  224 (622)
Q Consensus       152 d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------~dg~i~iwd~~  224 (622)
                      +.++|+..+ ..+.|.|.|+.+....-.+..-..+.........+....+-.-|+|+.++++-      .-|.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455676665 67889999988542211111110000000000112233445567898888752      23568888887


Q ss_pred             CCceEEEeccC---CcCeeEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCcEEEEEeCCC---
Q psy2110         225 TRGIAKIISAH---MHPVCSISWSRNGYKIISAST--------------------DNNVCIWDVLTGECEQKYRFPS---  278 (622)
Q Consensus       225 ~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~--------------------d~~i~iwd~~~~~~~~~~~~~~---  278 (622)
                      +.+........   ...-+.+.|.|..+.++|...                    ..++.+||+.+.+.++.+....   
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            77776665532   233456777887777776532                    3569999999999999999653   


Q ss_pred             CeEEEEEe--CCCCeEEEEeeCCCcEEEEEe-cCC----ceeecccC-----------------CCCceEEEEEeeCCCE
Q psy2110         279 PILKVQFH--PRNDHMFLVCPMRHAAVLVDT-DGD----HQIVPIDE-----------------DSDLSIVASFDRRGQH  334 (622)
Q Consensus       279 ~v~~~~~~--~~~~~~~~~~~~~~~i~~~d~-~~~----~~~~~~~~-----------------~~~~~~~~~~~~~~~~  334 (622)
                      -+..+.|.  |+..+-++.+....+|..|-. ..+    +.+..+..                 -...++.+.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            34456664  556666777777777766655 222    12222211                 1456788999999999


Q ss_pred             EEEEe-cCCeEEEEeCCCc---cEEEEEecC----------------CCCEEEEEEcCCCCEEEEEe
Q psy2110         335 VVTGN-SKGKVLVLSCPAL---ELKASFKAS----------------TTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       335 l~~~~-~dg~i~i~d~~~~---~~~~~~~~~----------------~~~i~~~~~s~~~~~l~~~~  381 (622)
                      |++.+ ..|.|+.||+...   +++.++..-                .+...-+..|.||+.|.+.+
T Consensus       326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            98766 5789999999753   233333210                11235677888888877664

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2444|consensus

Probab=97.60  E-value=0.00014  Score=62.85  Aligned_cols=141  Identities=11%  Similarity=0.056  Sum_probs=78.0

Q ss_pred             EEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110         335 VVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV  413 (622)
Q Consensus       335 l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  413 (622)
                      +...+.+|.|.-++++..+.... -.-+...   ...-.-+..+++|+.+|.|++|+...        .......+....
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~--------~g~~~d~~~s~~  101 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNL--------EGAHSDRVCSGE  101 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCc--------cchHHHhhhccc
Confidence            33446677777776654332211 1111111   11122345689999999999998772        101111111111


Q ss_pred             cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE--e-CCcEEEeecC
Q psy2110         414 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI--S-SGVVSLWAQN  488 (622)
Q Consensus       414 ~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~--~-dg~v~iw~~~  488 (622)
                      ... ...+.--.++.+.++++. ++.|+.|++..++.+.....|...++..+..+..+++|+++  + |..++.|++.
T Consensus       102 e~i-~~~Ip~~~~~~~~c~~~~-dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  102 ESI-DLGIPNGRDSSLGCVGAQ-DGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccc-eeccccccccceeEEecc-CCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            100 011122224456667776 99999999998888877777764445556566666666666  5 6677777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.60  E-value=0.044  Score=49.84  Aligned_cols=183  Identities=13%  Similarity=0.104  Sum_probs=118.0

Q ss_pred             EEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          86 KCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      .+.|..+|.++-+.+.. ...|+.+|+.+|+......-...-.-                -.++... ++...-.-.++.
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~Fg----------------EGit~~~-d~l~qLTWk~~~  111 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFG----------------EGITILG-DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--E----------------EEEEEET-TEEEEEESSSSE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccc----------------eeEEEEC-CEEEEEEecCCe
Confidence            67887788777665543 35799999999998876654443221                2444443 334444457899


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC-----CcCe
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH-----MHPV  239 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v  239 (622)
                      ..+||..+.+.+..+.....            -..++  .+|+.|+.+.....++++|..+.+..+.+.-.     -..+
T Consensus       112 ~f~yd~~tl~~~~~~~y~~E------------GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGE------------GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEccccceEEEEEecCCc------------ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            99999998777766654321            24455  56777777777888999998887776665422     2356


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC----------------CCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF----------------PSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      +.+.|- +|...|-.-....|...|..+|++...+..                ..-.+.+++.|..+.++++|-.=.
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp  253 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP  253 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence            667776 665555555567889999999999887741                134789999999999999885433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499|consensus

Probab=97.56  E-value=0.031  Score=48.83  Aligned_cols=215  Identities=8%  Similarity=0.013  Sum_probs=111.0

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEeC-CCC-eEEEEeeCCCcEEEEEecCCc--eeec---cc--CC
Q psy2110         250 KIISASTDNNVCIWDVLTGECEQKYRFPSP-ILKVQFHP-RND-HMFLVCPMRHAAVLVDTDGDH--QIVP---ID--ED  319 (622)
Q Consensus       250 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~~~-~~~-~~~~~~~~~~~i~~~d~~~~~--~~~~---~~--~~  319 (622)
                      ++..--..+.|.-||+.+.+..+.. ...+ ..++.+-- ++. .+.+.++..-.+.-||.....  ...+   ..  ..
T Consensus        29 Ll~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   29 LLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             EEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            3333334456666887765543322 2222 22333322 222 233444444445566643221  1111   10  11


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC--------CCCEEEEEEcCCCCEEEEE-eCCCcEEEEe
Q psy2110         320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS--------TTAIKSIEFARRGNCLLVN-TGDRLIRVYN  390 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d  390 (622)
                      .........+|+|++++-.-.+- -..+....+.+..-+.+|        -.--+.++|+.+.+.+... +.+-.|.-||
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~-~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADF-GDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             hcccccCccCCCCceeeeeeccc-cccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            23344556789999844322221 112222223333222222        2234578998888776655 5577787788


Q ss_pred             cccccccCCCCCCCcceeeecccc--ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDLVN--KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      .+-.  .+...+++.+..++....  +..--.++...+|.+.++.-. .++|+..|..+|+.+..+.-+... |++++|-
T Consensus       187 yd~~--tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eiklPt~q-itsccFg  262 (310)
T KOG4499|consen  187 YDCP--TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIKLPTPQ-ITSCCFG  262 (310)
T ss_pred             cCCC--cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEEcCCCc-eEEEEec
Confidence            5411  111113333333332111  111123566677877777665 889999999999999999988776 9999995


Q ss_pred             CC
Q psy2110         469 PV  470 (622)
Q Consensus       469 p~  470 (622)
                      -.
T Consensus       263 Gk  264 (310)
T KOG4499|consen  263 GK  264 (310)
T ss_pred             CC
Confidence            43

>KOG4499|consensus

Probab=97.54  E-value=0.037  Score=48.34  Aligned_cols=144  Identities=14%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             cCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE-
Q psy2110         237 HPVCSISWSRNGYKIISASTD---------NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD-  306 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d-  306 (622)
                      ...+.-..+|+|++++-.-.|         |.++.|-. .++....+..-.--..++|+.+.+.+.+.-+.+-.+.-|| 
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy  187 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY  187 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence            455666778999984422222         34555532 2222222222233457899988888888888888887777 


Q ss_pred             -ecCC-----ceeecccC----CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC-CCC
Q psy2110         307 -TDGD-----HQIVPIDE----DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR-RGN  375 (622)
Q Consensus       307 -~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~  375 (622)
                       ..++     +.+..+..    .....-.++++.+|.+.++.-..++|..+|..+|+.+..+......|++.+|-- +-.
T Consensus       188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d  267 (310)
T KOG4499|consen  188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD  267 (310)
T ss_pred             CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence             3332     22222221    112223456677888888888889999999999999999999999999999953 334


Q ss_pred             EEEEEe
Q psy2110         376 CLLVNT  381 (622)
Q Consensus       376 ~l~~~~  381 (622)
                      .|++.+
T Consensus       268 ~~yvT~  273 (310)
T KOG4499|consen  268 ILYVTT  273 (310)
T ss_pred             EEEEEe
Confidence            444443

>PRK10115 protease 2; Provisional

Probab=97.42  E-value=0.27  Score=53.03  Aligned_cols=238  Identities=9%  Similarity=0.037  Sum_probs=119.2

Q ss_pred             cCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC-----CcEEEEE
Q psy2110         237 HPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR-----HAAVLVD  306 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~i~~~d  306 (622)
                      -.+..+.|+|||++|+.+...     ..|++.|+.+++.+...- ...-..++|+++++.++++...+     ..++.++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            346678899999988876442     258899998886332211 11125699999999888776533     3577778


Q ss_pred             ecCC--ceeecccCCCCceE-EEEEeeCCCEEEEEec---CCeEEEEeC--CCccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         307 TDGD--HQIVPIDEDSDLSI-VASFDRRGQHVVTGNS---KGKVLVLSC--PALELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       307 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~---dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      +.+.  .....+........ ....+.++++++..+.   ++.+.+++.  .++.....+.........+. +.. ..|.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEEE
Confidence            7766  32333333222232 3334448887766443   346888884  33443322332223333332 333 3333


Q ss_pred             EEeC-C-CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe--EEEEECCCCeeEEEE
Q psy2110         379 VNTG-D-RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA--LYIWEKSVGNLVKIL  454 (622)
Q Consensus       379 ~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~--i~iwd~~~~~~~~~~  454 (622)
                      ..+. + ...+|..+.-.       .......+........+..+.++  +++|+.....++.  +++++..++ .+..+
T Consensus       284 ~~tn~~~~~~~l~~~~~~-------~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l  353 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVR-------DEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTR-EVIGI  353 (686)
T ss_pred             EEEcCCCCCceEEEecCC-------CcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCC-ceEEe
Confidence            3332 2 23344433310       11122233322223345556665  4455555444555  445554433 34444


Q ss_pred             e-cCCCCceeEEEEC--CCCC-EEEEEe----CCcEEEeecC
Q psy2110         455 H-GTKGELLLDVVWH--PVRP-IIASIS----SGVVSLWAQN  488 (622)
Q Consensus       455 ~-~~~~~~v~~v~~s--p~~~-~l~s~~----dg~v~iw~~~  488 (622)
                      . ..... +..+.++  +++. ++++.+    -+.++.+++.
T Consensus       354 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~  394 (686)
T PRK10115        354 AFDDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMD  394 (686)
T ss_pred             cCCCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence            3 22211 3334455  3433 444433    2667777764

>PHA02713 hypothetical protein; Provisional

Probab=97.38  E-value=0.017  Score=60.59  Aligned_cols=228  Identities=11%  Similarity=0.007  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCceEE--EeccCCcCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCcEEEEEeCCCCeEEEEEeCC
Q psy2110         217 RIVLWDFLTRGIAK--IISAHMHPVCSISWSRNGYKIISASTD------NNVCIWDVLTGECEQKYRFPSPILKVQFHPR  288 (622)
Q Consensus       217 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  288 (622)
                      .+..||..+++...  .+...... .+++. -++..++.|+.+      ..+..||..+.+....-..+.+........-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            46778877765332  12111111 12222 256666777643      3478889887765332222222211122222


Q ss_pred             CCeEEEEeeCCC-----cEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC-------------------
Q psy2110         289 NDHMFLVCPMRH-----AAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG-------------------  342 (622)
Q Consensus       289 ~~~~~~~~~~~~-----~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------------  342 (622)
                      +..+++.|+.++     .+..||..+..-  +..+........  +..-+|+..+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~--~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYG--MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccccc--EEEECCEEEEEeCCCcccccccccccccccccccc
Confidence            345777777653     377888876532  222222221111  2234677777777542                   


Q ss_pred             ----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEecccccccCCCCCCCcceeeecc
Q psy2110         343 ----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD------RLIRVYNHQEVLNAGKDGDPEPIQKLQDL  412 (622)
Q Consensus       343 ----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  412 (622)
                          .+..||..+.+-...-.-.......-+..-+++..+.|+.+      ..+..||..+      ......+..+...
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~------~~~W~~~~~m~~~  502 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT------YNGWELITTTESR  502 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC------CCCeeEccccCcc
Confidence                47778877654322111111111111122346666666643      2356787762      0111222222211


Q ss_pred             ccceeeeeEEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecCCC
Q psy2110         413 VNKTMWKKCCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKG  459 (622)
Q Consensus       413 ~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~  459 (622)
                      ...   .. ...-+|+..++|+. ++  .+..||..+.+-...-..|..
T Consensus       503 r~~---~~-~~~~~~~iyv~Gg~-~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        503 LSA---LH-TILHDNTIMMLHCY-ESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             ccc---ce-eEEECCEEEEEeee-cceeehhhcCcccccccchhhhcCC
Confidence            111   11 11227777778876 55  677788777665444444443

>KOG2395|consensus

Probab=97.35  E-value=0.0097  Score=58.16  Aligned_cols=150  Identities=16%  Similarity=0.208  Sum_probs=98.7

Q ss_pred             cCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC--E-----EEEeeCC
Q psy2110          90 SGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT--L-----LAVGCND  162 (622)
Q Consensus        90 sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~--~-----l~s~~~d  162 (622)
                      ..+..+|+..+.....|+-.|++.|+.+...+-|.. |                 .-+.+.|+.+  .     -+.|-.+
T Consensus       342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i-----------------~mv~~t~d~K~~Ql~~e~TlvGLs~  403 (644)
T KOG2395|consen  342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-I-----------------NMVDITPDFKFAQLTSEQTLVGLSD  403 (644)
T ss_pred             ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-c-----------------ceeeccCCcchhcccccccEEeecC
Confidence            344555555444447888899999999999998887 3                 2556666543  1     2345567


Q ss_pred             CcEEEEecCCccc--ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         163 GRIVLWDFLTRGI--AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       163 g~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      ..|.-||.+-...  +...+.+...       .-....|.+-..+| ++++|+.+|.|++||--.......+.+...+|.
T Consensus       404 n~vfriDpRv~~~~kl~~~q~kqy~-------~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~  475 (644)
T KOG2395|consen  404 NSVFRIDPRVQGKNKLAVVQSKQYS-------TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK  475 (644)
T ss_pred             CceEEecccccCcceeeeeeccccc-------cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence            8888998763211  1111111110       00123445555555 789999999999999744445566788889999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                      .+..+.+|++|+..+ +..+.+.++.
T Consensus       476 hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  476 HVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             eEEeeccCcEEEEec-ccEEEEEEEe
Confidence            999999999988776 4566666653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.31  E-value=0.021  Score=44.03  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             eEEEEcC---CC-CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEE
Q psy2110         145 VTCAFNK---RG-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  220 (622)
Q Consensus       145 ~~~~~s~---d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  220 (622)
                      ++|++..   || +.|++|+.|..||+|+-..  .+..+...            ..|.+++-... ..++.+..+|+|-+
T Consensus         3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e~------------~~v~~L~~~~~-~~F~Y~l~NGTVGv   67 (111)
T PF14783_consen    3 TALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITET------------DKVTSLCSLGG-GRFAYALANGTVGV   67 (111)
T ss_pred             eEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEecc------------cceEEEEEcCC-CEEEEEecCCEEEE
Confidence            4555443   43 4899999999999998554  44444433            34677776665 56889999999999


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcC---CC-CEEEEEeCCCcEE
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSR---NG-YKIISASTDNNVC  261 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~s~~~d~~i~  261 (622)
                      |+-  ...+...+.. ..+.++.+..   || ..|++|-.+|.|-
T Consensus        68 Y~~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   68 YDR--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EeC--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            985  3334455543 3366666543   33 2688888888764

>KOG2395|consensus

Probab=97.30  E-value=0.014  Score=57.10  Aligned_cols=144  Identities=15%  Similarity=0.238  Sum_probs=100.5

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe------EEEEeeCCCcEEEEEecCCce--eeccc
Q psy2110         247 NGYKII-SASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH------MFLVCPMRHAAVLVDTDGDHQ--IVPID  317 (622)
Q Consensus       247 ~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~i~~~d~~~~~~--~~~~~  317 (622)
                      +.+.|+ ++.....++-.|++.|+.+........|.-+.+.|+.+.      --++|-.+..+.-||.+-...  +....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            444443 445556789999999999999998777888888887642      134566788899999874322  11111


Q ss_pred             CC----CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         318 ED----SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       318 ~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+    .....|.+-..+| +|++|+.+|.|++||--.......+.+-..+|..+..+.+|++|+..+ +..+.+.+..
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            11    1223344444444 899999999999999744445566778889999999999999887766 4566666654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.29  E-value=0.025  Score=43.61  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             eeEEEEcC---CC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee
Q psy2110         239 VCSISWSR---NG-YKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       239 v~~~~~s~---~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  314 (622)
                      |+++++..   || +.|++|+.|..|++|+-  .+.+..+.-...+.+++-...+  .|+.+..+|+|-+|+...  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCC--EEEEEecCCEEEEEeCcc--eee
Confidence            56666654   33 58999999999999963  4778888888889888887764  478888899998887632  333


Q ss_pred             cccCCCCceEEEEEeeCC---CEEEEEecCCeEE
Q psy2110         315 PIDEDSDLSIVASFDRRG---QHVVTGNSKGKVL  345 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~  345 (622)
                      ........+.-..++.++   ..|++|-.+|.|-
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333333333333444443   4688888888764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.067  Score=48.79  Aligned_cols=156  Identities=12%  Similarity=0.153  Sum_probs=113.7

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .++.|+|+.+.|++......-.||-..+|+.+.++....-.          ..-.+.+..+|++.++--.++.+.++.+.
T Consensus        89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----------DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----------DPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC----------ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            69999999999998888888888888888888877654322          23467888888888888888999988877


Q ss_pred             CCceEEE-------ec--cC-CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------CCCCeEEE
Q psy2110         225 TRGIAKI-------IS--AH-MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----------FPSPILKV  283 (622)
Q Consensus       225 ~~~~~~~-------~~--~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~v~~~  283 (622)
                      .......       +.  .+ ......++|.|....|+.+-.-.-+.||.+..+...-...           +-..+.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            5532211       11  12 5567899999999889888877777777665332111000           12457788


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      .|++...++++.+..++.+.-.|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            999988889999988888888887765

>smart00320 WD40 WD40 repeats

Probab=97.26  E-value=0.00089  Score=40.82  Aligned_cols=38  Identities=34%  Similarity=0.646  Sum_probs=33.6

Q ss_pred             ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy2110         227 GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD  264 (622)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd  264 (622)
                      ++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45566778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.24  E-value=0.0012  Score=40.12  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=34.3

Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      +++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.21  E-value=0.2  Score=47.32  Aligned_cols=269  Identities=16%  Similarity=0.102  Sum_probs=128.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE---eccC---CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI---ISAH---MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~---~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      .+..+.|..+..-+++|. .+.  |+...++.....   ....   .-...++.|..+ ..+++| ..+ +.+.-.+.|+
T Consensus        18 ~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~   91 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGGK   91 (302)
T ss_dssp             -EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTTS
T ss_pred             ceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCCC
Confidence            478899996666676665 454  343333322111   1111   123667777643 344444 444 4444455565


Q ss_pred             EEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-eecccCCCCceEEEEEeeCCCEEEEEecCCeE
Q psy2110         270 CEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV  344 (622)
Q Consensus       270 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  344 (622)
                      .-..+.    .+.....+....++. ..+ .+..+.|+.- .+.+.. ..........+..+..+++|++++++......
T Consensus        92 tW~~v~l~~~lpgs~~~i~~l~~~~-~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~  168 (302)
T PF14870_consen   92 TWERVPLSSKLPGSPFGITALGDGS-AEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFY  168 (302)
T ss_dssp             S-EE----TT-SS-EEEEEEEETTE-EEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEE
T ss_pred             CcEEeecCCCCCCCeeEEEEcCCCc-EEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEE
Confidence            444433    233444444444432 222 3334433221 112211 12223334567778888999999888666656


Q ss_pred             EEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee--eeccccceeeeeEE
Q psy2110         345 LVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK--LQDLVNKTMWKKCC  422 (622)
Q Consensus       345 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  422 (622)
                      .-|+.-...-...-+.....|.+|.|.|++...+++ ..|.|++=+...        .......  .........+..++
T Consensus       169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--------~~~~w~~~~~~~~~~~~~~ld~a  239 (302)
T PF14870_consen  169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--------DGETWSEPIIPIKTNGYGILDLA  239 (302)
T ss_dssp             EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--------EEEEE---B-TTSS--S-EEEEE
T ss_pred             EEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--------CccccccccCCcccCceeeEEEE
Confidence            677754332233333456889999999998865544 888888876221        0111111  11112334567889


Q ss_pred             EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEEeCCcEEEe
Q psy2110         423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASISSGVVSLW  485 (622)
Q Consensus       423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~dg~v~iw  485 (622)
                      |.+++...|+|+.  |.+ +...+.|+--..-+.  +-...++.+.|.+..+-++.+.+|.+--|
T Consensus       240 ~~~~~~~wa~gg~--G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  240 YRPPNEIWAVGGS--GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             ESSSS-EEEEEST--T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             ecCCCCEEEEeCC--ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            9999888888774  444 556666765555443  11222888999877777777778887655

>KOG4441|consensus

Probab=97.18  E-value=0.049  Score=57.05  Aligned_cols=186  Identities=13%  Similarity=0.085  Sum_probs=100.7

Q ss_pred             CCCCEEEEEeCCC------eEEEEEcCCCceEEEecc-CCcCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCcE
Q psy2110         204 KRGTLLAVGCNDG------RIVLWDFLTRGIAKIISA-HMHPVCSISWSRNGYKIISASTD------NNVCIWDVLTGEC  270 (622)
Q Consensus       204 ~~g~~l~~~~~dg------~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~  270 (622)
                      ..+.++++|+..+      .+..||..++.......- +...-.+++.. ++...++|+.|      .++..||..+.+.
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3456677777663      577888877643322211 12222334443 56777888888      3588899988875


Q ss_pred             EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc-----EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC---
Q psy2110         271 EQKYRFPSPILKVQFHPRNDHMFLVCPMRHA-----AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG---  342 (622)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---  342 (622)
                      ...-....+-..+....-+..++++|+.++.     +-.||..+..--.........-......-+|+..++|+.++   
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            5533333333333333335568888888864     55666665432211111111122223345677888887554   


Q ss_pred             ---eEEEEeCCCccEEE--EEecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecc
Q psy2110         343 ---KVLVLSCPALELKA--SFKASTTAIKSIEFARRGNCLLVNTGDR-----LIRVYNHQ  392 (622)
Q Consensus       343 ---~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~i~d~~  392 (622)
                         ++..||..+.+...  .+........ ++ .-++...++|+.|+     +|..||..
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCC
Confidence               56788877655332  2221111111 22 22566677777665     26667766

>KOG4441|consensus

Probab=97.16  E-value=0.062  Score=56.29  Aligned_cols=232  Identities=15%  Similarity=0.102  Sum_probs=117.9

Q ss_pred             CCCCEEEEecCCC-----CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---
Q psy2110          91 GDGEYVCAGSARQ-----HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---  162 (622)
Q Consensus        91 p~~~~l~~~~~~~-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---  162 (622)
                      ..+..+++|+...     ..+..+|..+++-.....-......                .+++.. ++...++|+.|   
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~----------------~~~~~~-~~~lYv~GG~~~~~  345 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR----------------VGVAVL-NGKLYVVGGYDSGS  345 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc----------------ccEEEE-CCEEEEEccccCCC
Confidence            3455667777652     4677888877643322221111110                244443 45778888888   


Q ss_pred             ---CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe-----EEEEEcCCCceEEEecc
Q psy2110         163 ---GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR-----IVLWDFLTRGIAKIISA  234 (622)
Q Consensus       163 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~  234 (622)
                         .++..||...++-...-.-.....         ...  .-.-+|.+.|+|+.+|.     +..||..+.+....-. 
T Consensus       346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~---------~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-  413 (571)
T KOG4441|consen  346 DRLSSVERYDPRTNQWTPVAPMNTKRS---------DFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-  413 (571)
T ss_pred             cccceEEEecCCCCceeccCCccCccc---------cce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCC-
Confidence               356777877765332111111110         001  11125777888888754     6678776654322111 


Q ss_pred             CCcCeeEEEE-cCCCCEEEEEeCCC------cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc-----E
Q psy2110         235 HMHPVCSISW-SRNGYKIISASTDN------NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA-----A  302 (622)
Q Consensus       235 ~~~~v~~~~~-s~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----i  302 (622)
                      ......+... .-+|...++|+.++      ++..||..+++....-....+-......--+..+++.|+.++.     +
T Consensus       414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~V  493 (571)
T KOG4441|consen  414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSV  493 (571)
T ss_pred             CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceE
Confidence            1111122111 22677777777554      5788998888765544432221112222224567888887762     5


Q ss_pred             EEEEecCCceeec--ccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCcc
Q psy2110         303 VLVDTDGDHQIVP--IDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALE  353 (622)
Q Consensus       303 ~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  353 (622)
                      ..||..+..-...  +......+.  ...-+++..++|+.+|     +|..||..+.+
T Consensus       494 E~ydp~~~~W~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  494 ERYDPETNQWTMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEcCCCCceeEcccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            5677766543222  222222221  2233567777787765     45556655443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.17  Score=46.22  Aligned_cols=160  Identities=10%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      +.+-...+.++.|+|+.+.|++......-.++=...|+.++.+..  -+....+.+..++. ++++--.+..+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence            445556699999999999999988888888887888999998873  34566677776654 555666677777777654


Q ss_pred             Cceee----------cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE---EEEEecC-------CCCEEEEE
Q psy2110         310 DHQIV----------PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL---KASFKAS-------TTAIKSIE  369 (622)
Q Consensus       310 ~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~-------~~~i~~~~  369 (622)
                      .....          .....+...-.++|+|..+.++.+-+..-+.||.+.....   +.....+       -..|.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            42221          1112245567899999999999988888788877653321   1111111       23467788


Q ss_pred             EcCCC-CEEEEEeCCCcEEEEecc
Q psy2110         370 FARRG-NCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       370 ~s~~~-~~l~~~~~d~~i~i~d~~  392 (622)
                      |++.. .+|+-+..++.+.-.|..
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC
Confidence            88654 445555556767766665

>KOG4640|consensus

Probab=97.12  E-value=0.0029  Score=62.99  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=78.4

Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceE-EEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSI-VASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      .+..+..+.|+|..+ +++.+..+|.+.+..+. .+++..+..++..++ +++|.|||+.+++|-.||+|++.|+.++..
T Consensus        19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            456788899999776 78888899999998888 777888886666666 999999999999999999999999999887


Q ss_pred             EEEEe-cCCCCEEEEEEcC
Q psy2110         355 KASFK-ASTTAIKSIEFAR  372 (622)
Q Consensus       355 ~~~~~-~~~~~i~~~~~s~  372 (622)
                      +..+. .....|.++-|++
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            77632 3446677888863

>PHA02713 hypothetical protein; Provisional

Probab=97.12  E-value=0.034  Score=58.31  Aligned_cols=182  Identities=6%  Similarity=0.048  Sum_probs=93.1

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCCceEE--EeccCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEE
Q psy2110         205 RGTLLAVGCND------GRIVLWDFLTRGIAK--IISAHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTGECE  271 (622)
Q Consensus       205 ~g~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~  271 (622)
                      ++.+.+.|+.+      ..+..||..+.....  .+..........  .-+|+..+.|+.++     .+..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56677777643      347788877664321  111111111122  22677777777653     4888998877654


Q ss_pred             EEEeCCCCeEEEEEeCCCCeEEEEeeCCC-----------------------cEEEEEecCCce--eecccCCCCceEEE
Q psy2110         272 QKYRFPSPILKVQFHPRNDHMFLVCPMRH-----------------------AAVLVDTDGDHQ--IVPIDEDSDLSIVA  326 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------------------~i~~~d~~~~~~--~~~~~~~~~~~~~~  326 (622)
                      ..-..+.+....+...-+..+++.|+.++                       .+..||..+..-  +..+....  ....
T Consensus       381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--~~~~  458 (557)
T PHA02713        381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--IRPG  458 (557)
T ss_pred             ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc--ccCc
Confidence            43332222221111112345667666542                       366677765532  22221111  1112


Q ss_pred             EEeeCCCEEEEEecC------CeEEEEeCCC-cc--EEEEEecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEecc
Q psy2110         327 SFDRRGQHVVTGNSK------GKVLVLSCPA-LE--LKASFKASTTAIKSIEFARRGNCLLVNTGDR--LIRVYNHQ  392 (622)
Q Consensus       327 ~~~~~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~i~d~~  392 (622)
                      +..-+|+..+.|+.+      ..+..||..+ .+  .+..+.........+.+  +++..++|+.++  .+..||..
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence            233456777777654      2467899886 33  33333333222222222  677788888777  56666665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.11  E-value=0.21  Score=45.55  Aligned_cols=182  Identities=9%  Similarity=0.054  Sum_probs=113.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCC--eEEEEEcCCCceEEEeccC-CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDG--RIVLWDFLTRGIAKIISAH-MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      ....+.|..+|.++-+.+.-|  .|+.+|+.+++......-. .----.++...| +...-.=.++...+||..+-+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            345778877888777777666  6889999999876554321 122234444422 233333457899999999999999


Q ss_pred             EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC--C---CceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         273 KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED--S---DLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      .+..+..=..++  .++.. ++.+.....++.+|..+-.....+...  .   ..+..+.|- +|...|-.-....|...
T Consensus       125 ~~~y~~EGWGLt--~dg~~-Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKR-LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEE-SSS--EEE--ECSSC-EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEecCCcceEEE--cCCCE-EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            999877777777  44554 455555778888888765544433322  1   223345553 56555555566778899


Q ss_pred             eCCCccEEEEEec---------------CCCCEEEEEEcCCCCEEEEEeC
Q psy2110         348 SCPALELKASFKA---------------STTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       348 d~~~~~~~~~~~~---------------~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      |..+|+....+..               .....+.||+.|....|.+.+.
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            9999998887641               1346899999998877776664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.06  E-value=0.26  Score=45.81  Aligned_cols=159  Identities=14%  Similarity=0.094  Sum_probs=94.2

Q ss_pred             CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe-CCCccEE-E
Q psy2110         279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS-CPALELK-A  356 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~-~  356 (622)
                      .+.+.++++++..++++...++.-.+|-...+....... ....+....|++++...+....+....++. ..++... .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688899999999887777444444444444333222221 233666788999988877777666666663 3333322 1


Q ss_pred             EEecC--CCCEEEEEEcCCCCEEEEEe---CCCcEEEEecccccccCCCCCCCcc-eeeecc-ccceeeeeEEEcCCCCe
Q psy2110         357 SFKAS--TTAIKSIEFARRGNCLLVNT---GDRLIRVYNHQEVLNAGKDGDPEPI-QKLQDL-VNKTMWKKCCFSGDGEY  429 (622)
Q Consensus       357 ~~~~~--~~~i~~~~~s~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~spdg~~  429 (622)
                      .....  ...|+.+.+||||..++...   .++.|.+--+....    .+.+..+ ..+... .....+..+.|.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~----~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG----DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC----CCCcceeccceEecccccCcceeeeecCCCEE
Confidence            22211  12899999999999988776   35677776654211    1101111 111111 11345678999999998


Q ss_pred             EEEeeCCCCeEEE
Q psy2110         430 VCAGSARQHALYI  442 (622)
Q Consensus       430 l~~~~~~d~~i~i  442 (622)
                      ++.+...+..+..
T Consensus       180 ~V~~~~~~~~~~~  192 (253)
T PF10647_consen  180 VVLGRSAGGPVVR  192 (253)
T ss_pred             EEEeCCCCCceeE
Confidence            8888765554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=97.03  E-value=0.69  Score=50.02  Aligned_cols=233  Identities=7%  Similarity=-0.058  Sum_probs=117.8

Q ss_pred             eeEEEEcCCCCEEEEeeC-----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---
Q psy2110         144 AVTCAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND---  215 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---  215 (622)
                      +..+.++||+++|+.+..     ...|++-|+.+|..+.......             -..++|++|++.|+....+   
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-------------~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-------------EPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-------------ceEEEEeeCCCEEEEEEecCCC
Confidence            357789999998886533     2358888888774322111110             1358999999877776542   


Q ss_pred             ---CeEEEEEcCCC--ceEEEeccCCcCee-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCcEEEEEeCCCCeEEEE
Q psy2110         216 ---GRIVLWDFLTR--GIAKIISAHMHPVC-SISWSRNGYKIISAST---DNNVCIWDVL--TGECEQKYRFPSPILKVQ  284 (622)
Q Consensus       216 ---g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~---d~~i~iwd~~--~~~~~~~~~~~~~v~~~~  284 (622)
                         ..|+.+++.++  +....+........ .+..+.++++++..+.   ++.+.+++..  ++.....+.....+..-.
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL  275 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence               36778888877  33334443333333 3334558887665543   3578888843  344333333333322212


Q ss_pred             EeCCCCeEEEEeeC-CCc--EEEEEecCCceeecccCC--CCceEEEEEeeCCCEEEEEecCCeEE--EEeCCCccEEEE
Q psy2110         285 FHPRNDHMFLVCPM-RHA--AVLVDTDGDHQIVPIDED--SDLSIVASFDRRGQHVVTGNSKGKVL--VLSCPALELKAS  357 (622)
Q Consensus       285 ~~~~~~~~~~~~~~-~~~--i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~--i~d~~~~~~~~~  357 (622)
                      .+. +..+++.... ...  +...++........+..+  ...+..+.+. .+.++++...+|.-.  +++..++ .+..
T Consensus       276 ~~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~  352 (686)
T PRK10115        276 DHY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIG  352 (686)
T ss_pred             EeC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEE
Confidence            233 3334444332 223  333344321111222222  2356666665 334555566666544  4454333 3333


Q ss_pred             Ee-cCCCCEEEEEEc--CCCC-EEEEEeC---CCcEEEEecc
Q psy2110         358 FK-ASTTAIKSIEFA--RRGN-CLLVNTG---DRLIRVYNHQ  392 (622)
Q Consensus       358 ~~-~~~~~i~~~~~s--~~~~-~l~~~~~---d~~i~i~d~~  392 (622)
                      +. .....+..+.++  +++. .+++.++   -+.++.+|+.
T Consensus       353 l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~  394 (686)
T PRK10115        353 IAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMD  394 (686)
T ss_pred             ecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence            33 222233333444  4444 3433332   4668888876

>KOG2079|consensus

Probab=97.02  E-value=0.015  Score=61.81  Aligned_cols=106  Identities=12%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK  118 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~  118 (622)
                      .+..++.++..|.+...|.....          ....+......++.+++|+.+|+.++.|-.+ |.|.+||+.+++.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL----------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~-G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL----------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGD-GHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc----------chhhcCCccCCcceeeEecCCCceeccccCC-CcEEEEEccCCccee
Confidence            34568888888988887775421          1134445566788999999999999999875 999999999999999


Q ss_pred             EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110         119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  171 (622)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~  171 (622)
                      .+..|..+..              .|..+.+..++..++++..-|.  +|.+.
T Consensus       167 ~i~e~~ap~t--------------~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  167 VITEHGAPVT--------------GVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeeecCCccc--------------eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            9887776652              1124445556667888777775  67653

>KOG2079|consensus

Probab=97.02  E-value=0.027  Score=60.09  Aligned_cols=102  Identities=25%  Similarity=0.518  Sum_probs=74.5

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      .+..++.|+..|.+...|+...  +..+  +...      ....+|++++|+.+|+.++.|-.+|.|.+||+..++.++.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~--~~ne------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~  167 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPL--HQNE------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV  167 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchh--hcCC------ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence            4557888888899988887654  1111  1111      1114689999999999999999999999999999999998


Q ss_pred             eccCCcCeeEEEE---cCCCCEEEEEeCCCcEEEEEC
Q psy2110         232 ISAHMHPVCSISW---SRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       232 ~~~~~~~v~~~~~---s~~~~~l~s~~~d~~i~iwd~  265 (622)
                      +..|..+.+++-+   ..++..++++...|.  +|.+
T Consensus       168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            8877766665543   446667888877775  5543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.98  E-value=0.28  Score=48.55  Aligned_cols=78  Identities=12%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEE-CCC----------------CCEEEEEe
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVW-HPV----------------RPIIASIS  478 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~-sp~----------------~~~l~s~~  478 (622)
                      ....+++.+|++++.|+..+ -|.|.++|+.++..++.++|-.+..+.-+.- .+.                ..+|+.-.
T Consensus       308 R~~~~i~~sP~~~laA~tDs-lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDS-LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcC-CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            34568899999998888765 8899999999999999998876532111111 111                11344333


Q ss_pred             --CCcEEEeecCCccccc
Q psy2110         479 --SGVVSLWAQNQVENWS  494 (622)
Q Consensus       479 --dg~v~iw~~~~~~~~~  494 (622)
                        -|.|.||.+.+.....
T Consensus       387 prRg~lEvW~~~~g~Rv~  404 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVA  404 (415)
T ss_pred             ccCCeEEEEecCCCCEEE
Confidence              7999999997655443

>KOG2444|consensus

Probab=96.83  E-value=0.002  Score=55.98  Aligned_cols=141  Identities=11%  Similarity=0.063  Sum_probs=83.0

Q ss_pred             EEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--cCCCCceEEEEE
Q psy2110         251 IISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASF  328 (622)
Q Consensus       251 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~  328 (622)
                      +...+.++.|+-++++..+....-.  ..+.+..--+....-+++++.++.+.+|...........  .........+..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSE--RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhh--hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            4444567777777665433211110  001111111222234778888999988887632221111  111222222333


Q ss_pred             eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEeccc
Q psy2110         329 DRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVN--TGDRLIRVYNHQE  393 (622)
Q Consensus       329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~--~~d~~i~i~d~~~  393 (622)
                      ..++.+..+++.+|.|+.|++.-.+.+.....|. .++..+..+..++.++++  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4456688899999999999998888777777776 566666666666777777  7777788887763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.77  E-value=0.74  Score=46.48  Aligned_cols=137  Identities=12%  Similarity=0.214  Sum_probs=78.6

Q ss_pred             eeEEEEcCC----CCEEEEeeCCCcEEEEecCC-----cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC
Q psy2110         144 AVTCAFNKR----GTLLAVGCNDGRIVLWDFLT-----RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN  214 (622)
Q Consensus       144 v~~~~~s~d----~~~l~s~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  214 (622)
                      |..+.|.|-    -..|+.....+.|.||.+.-     ++.+..-..+..+.+    .  -....+.|+|....|++-..
T Consensus        59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----p--vLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----P--VLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----c--cCCCcccccCCCceEEEEec
Confidence            368899885    32444455668999998752     122211111111100    0  11246789999988877665


Q ss_pred             CCeEEEEEcCC--CceEEEeccCCcCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCcE-----EEEEeCCCCeEEEEEe
Q psy2110         215 DGRIVLWDFLT--RGIAKIISAHMHPVCSISWSRNGYKIISASTD-NNVCIWDVLTGEC-----EQKYRFPSPILKVQFH  286 (622)
Q Consensus       215 dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~  286 (622)
                      ...-.++++..  .+....++ ..+.|.|.+|.+||++|+.+-.. =.-++||-.....     --.|...+.|.++.-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT  211 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT  211 (671)
T ss_pred             CceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence            55545666543  33334454 45889999999999998877543 2467888543321     1233345555555444


Q ss_pred             C
Q psy2110         287 P  287 (622)
Q Consensus       287 ~  287 (622)
                      -
T Consensus       212 ~  212 (671)
T PF15390_consen  212 V  212 (671)
T ss_pred             c
Confidence            3

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.73  E-value=0.73  Score=45.82  Aligned_cols=276  Identities=9%  Similarity=0.092  Sum_probs=132.0

Q ss_pred             CcEEEeccCCCeEEEEeccccceec-----------------------ccCceEEeecCCceEEEeechhhhhcCCCCCC
Q psy2110          13 GQHVVTGNSKGKVLVLSCPALELKA-----------------------SRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP   69 (622)
Q Consensus        13 g~~latg~~dg~v~vwd~~~~~~~~-----------------------~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~   69 (622)
                      ...|+.|+..|.+||++........                       ......++-=....+.+|.+.........+..
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            3588999999999999985543221                       11112222234455666766322111111111


Q ss_pred             ccchhhhhhccccceeEEEEcC----C-CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccce
Q psy2110          70 EPIQKLQDLVNKTMWKKCCFSG----D-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA  144 (622)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~sp----~-~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v  144 (622)
                      -....+....-......++.-|    . ..+|++-+- ||.+.+++-+.-...+.+.+.--+                  
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~-DG~L~~feqe~~~f~~~lp~~llP------------------  177 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSM-DGSLSFFEQESFAFSRFLPDFLLP------------------  177 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEec-CceEEEEeCCcEEEEEEcCCCCCC------------------
Confidence            1222221111111122233322    2 246666665 499999987654444444442211                  


Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccc-----------ccc--CCCccccc-ccccceEEEEECCCCCEEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-----------AHM--HPEFDGAL-DCISLAVTCAFNKRGTLLA  210 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~-----------~~~--~~~~~~~~-~~~~~v~~~~~s~~g~~l~  210 (622)
                      -.+.|.+....+++++.+..+.-|....-.....-.           ...  .+...-.+ ...-.+..+.++..-..++
T Consensus       178 gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv  257 (418)
T PF14727_consen  178 GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV  257 (418)
T ss_pred             cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence            267888888899999998899988763311000000           000  00000000 0001223334433323333


Q ss_pred             EEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE-E----cCCC---CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110         211 VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS-W----SRNG---YKIISASTDNNVCIWDVLTGECEQKYRFPSPILK  282 (622)
Q Consensus       211 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~----s~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~  282 (622)
                      +-+ ..++.+.+. +|......+ ......++. |    ..++   ..++.++.++++.||.=  .+....-.......+
T Consensus       258 vLg-er~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVa  332 (418)
T PF14727_consen  258 VLG-ERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVA  332 (418)
T ss_pred             EEe-cceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEE
Confidence            332 345666653 443332222 222222222 2    1122   24888888999999853  333333333333233


Q ss_pred             EEE--eCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         283 VQF--HPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       283 ~~~--~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      +..  .++-+.++++-+.+|.+.+--+.+...
T Consensus       333 l~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  333 LSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             EEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence            333  234455788888888888877766543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.70  E-value=0.88  Score=49.34  Aligned_cols=202  Identities=13%  Similarity=0.144  Sum_probs=117.8

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcc-cccccccceEEEEEC----------------CCCCEEEEEeCC
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFD-GALDCISLAVTCAFN----------------KRGTLLAVGCND  215 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s----------------~~g~~l~~~~~d  215 (622)
                      +..|+.++.++.|.-.|..+|+.+-.+......... ....|    ..+++.                ..+..++.++.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~c----RGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D  269 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTC----RGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD  269 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc----cceEEecCCcccccccccccccccCCEEEEecCC
Confidence            557777788888988899988877666544321110 00011    112221                134578888899


Q ss_pred             CeEEEEEcCCCceEEEeccCCcCe-------------eEEEEcC--CCCEEEEEeC----------CCcEEEEECCCCcE
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPV-------------CSISWSR--NGYKIISAST----------DNNVCIWDVLTGEC  270 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v-------------~~~~~s~--~~~~l~s~~~----------d~~i~iwd~~~~~~  270 (622)
                      +.+.-.|..+|+.+..+.. .+.|             ..+.-.|  .+..++.++.          +|.|+-+|.++|+.
T Consensus       270 g~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       270 ARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             CeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            9999999999998876642 1111             0111122  2335666643          57899999999998


Q ss_pred             EEEEeCCCC------------------e-EEEEEeCCCCeEEEEe-----------------eCCCcEEEEEecCCceee
Q psy2110         271 EQKYRFPSP------------------I-LKVQFHPRNDHMFLVC-----------------PMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       271 ~~~~~~~~~------------------v-~~~~~~~~~~~~~~~~-----------------~~~~~i~~~d~~~~~~~~  314 (622)
                      +-.+....+                  + ..+++.+....+++-.                 ...+.+.-.|.++++...
T Consensus       349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W  428 (764)
T TIGR03074       349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW  428 (764)
T ss_pred             eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence            877652110                  0 1233444333322211                 112456666777776665


Q ss_pred             cccCCCCc---------eEEEEEee-CCC---EEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         315 PIDEDSDL---------SIVASFDR-RGQ---HVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       315 ~~~~~~~~---------~~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      .++.....         ..-+.+.. +|+   .++.++.+|.++++|.++|+++...+
T Consensus       429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            55441111         11122222 553   78889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.70  E-value=0.68  Score=45.12  Aligned_cols=237  Identities=14%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCC-----
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCND-----  215 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d-----  215 (622)
                      .++|+|.|||+++++ ...|.|++++ ..+.....+.... ..   ..........++++|+   ..+|++....     
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~v---~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-EV---FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-TT---BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-cc---cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            369999999877665 5689999999 4433311111110 00   0111134688999994   2344333321     


Q ss_pred             ----CeEEEEEcCCC-------c-eEEEecc---CCcCeeEEEEcCCCCEEEEEeCCCc---EEEEECCCCcEEEEEe--
Q psy2110         216 ----GRIVLWDFLTR-------G-IAKIISA---HMHPVCSISWSRNGYKIISASTDNN---VCIWDVLTGECEQKYR--  275 (622)
Q Consensus       216 ----g~i~iwd~~~~-------~-~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~---i~iwd~~~~~~~~~~~--  275 (622)
                          ..|.-|....+       + .+..+..   ..+.-..|.|.|||.+.++.+..+.   .+-.+...++.++.-.  
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence                23444554433       1 1112222   3345677999999976666654332   0000001122222110  


Q ss_pred             ---------------------CCCCeEEEEEeCCCCeEEEE-eeCCCcEEEEEecCCc----------------------
Q psy2110         276 ---------------------FPSPILKVQFHPRNDHMFLV-CPMRHAAVLVDTDGDH----------------------  311 (622)
Q Consensus       276 ---------------------~~~~v~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~----------------------  311 (622)
                                           .-.....++|+|....++++ .+.+..-.+.-+..+.                      
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             cCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence                                 11224578999983334433 2333322222222110                      


Q ss_pred             -------eeecccCCCCceEEEEEee-------CCCEEEEEecCCeEEEEeCCCccEEEE----EecCCCCEEEEEEcCC
Q psy2110         312 -------QIVPIDEDSDLSIVASFDR-------RGQHVVTGNSKGKVLVLSCPALELKAS----FKASTTAIKSIEFARR  373 (622)
Q Consensus       312 -------~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i~~~~~s~~  373 (622)
                             +...+..| ..+..+.|..       .|.++++.-..+.|....+.....+..    +......+..+++.||
T Consensus       238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                   11111112 2334444442       345666666667787777764432221    1234447999999999


Q ss_pred             CCEEEEEeCCCcEE
Q psy2110         374 GNCLLVNTGDRLIR  387 (622)
Q Consensus       374 ~~~l~~~~~d~~i~  387 (622)
                      |.++++...+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99888888788775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1897|consensus

Probab=96.61  E-value=1.3  Score=47.44  Aligned_cols=316  Identities=13%  Similarity=0.139  Sum_probs=166.8

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEc--CCCceEEEEecc--CcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEK--SVGNLVKILHGT--KGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~--~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      ..+|-.|..+|.++..+ |.+.-+.+  .+|..-..-+.+  ..++                 .--.|+..++.-+.+..
T Consensus       588 ~~~~e~d~~yLlvalgd-G~l~~fv~d~~tg~lsd~Kk~~lGt~P~-----------------~Lr~f~sk~~t~vfa~s  649 (1096)
T KOG1897|consen  588 LTTFEGDIHYLLVALGD-GALLYFVLDINTGQLSDRKKVTLGTQPI-----------------SLRTFSSKSRTAVFALS  649 (1096)
T ss_pred             eEEeeccceEEEEEcCC-ceEEEEEEEcccceEccccccccCCCCc-----------------EEEEEeeCCceEEEEeC
Confidence            34666677888888865 88766544  455433222222  1222                 22345555544444444


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCce--EEEeccCCc
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGI--AKIISAHMH  237 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~  237 (622)
                      |.-..+|..+..-....+.....            -..+.|+.+  +..|+++. .+.+++..++.-+.  ++++.-+ .
T Consensus       650 drP~viY~~n~kLv~spls~kev------------~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~  715 (1096)
T KOG1897|consen  650 DRPTVIYSSNGKLVYSPLSLKEV------------NHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-E  715 (1096)
T ss_pred             CCCEEEEecCCcEEEeccchHHh------------hhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-C
Confidence            55555554333211111111100            011233322  23455543 56677776654332  2333322 4


Q ss_pred             CeeEEEEcCCCCEEEEEeC-----------C---CcEEEEECCCCcEEEEEeCC-----CCeEEEEEeCCCCeEEEEee-
Q psy2110         238 PVCSISWSRNGYKIISAST-----------D---NNVCIWDVLTGECEQKYRFP-----SPILKVQFHPRNDHMFLVCP-  297 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~-----------d---~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-  297 (622)
                      ....+++.+....+.+.+.           .   ..++++|-++-+.+...++.     ..+.+..|..|.+.++++|. 
T Consensus       716 ~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~  795 (1096)
T KOG1897|consen  716 SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG  795 (1096)
T ss_pred             ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence            4566677664433333322           1   23778887777766555432     24555668888666666663 


Q ss_pred             ---------CCCcEEEEEecCCceeecccCC--CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEE
Q psy2110         298 ---------MRHAAVLVDTDGDHQIVPIDED--SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK  366 (622)
Q Consensus       298 ---------~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  366 (622)
                               ..|.+.++.......+.....+  .+.+.++. --+|+++|.  -...|++|+..+.+.++.-..+..++.
T Consensus       796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~  872 (1096)
T KOG1897|consen  796 LVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAG--INQSVRLYEWTTERELRIECNISNPII  872 (1096)
T ss_pred             eeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeE
Confidence                     3567777777653332222211  22222222 125666654  345799999998877777778888899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      .+...-.|..+++|.--+.+.+...+.        ....+..+.........+++.+-.+..|+. +.. .|.+++-...
T Consensus       873 aL~l~v~gdeI~VgDlm~Sitll~y~~--------~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~-~gNlf~v~~d  942 (1096)
T KOG1897|consen  873 ALDLQVKGDEIAVGDLMRSITLLQYKG--------DEGNFEEVARDYNPNWMTAVEILDDDTYLG-AEN-SGNLFTVRKD  942 (1096)
T ss_pred             EEEEEecCcEEEEeeccceEEEEEEec--------cCCceEEeehhhCccceeeEEEecCceEEe-ecc-cccEEEEEec
Confidence            999999999999998777776665552        111222232223333334555554444443 332 6667766543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.54  E-value=0.68  Score=43.08  Aligned_cols=144  Identities=13%  Similarity=0.099  Sum_probs=89.1

Q ss_pred             ceEEEEECCCCCEEEEEe---CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcEE
Q psy2110         196 LAVTCAFNKRGTLLAVGC---NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWD-VLTGECE  271 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~  271 (622)
                      .+...+++++|+.++...   ....++++.  .+.....+. ....+....|++++...+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            367889999999887665   233455544  333333332 223788899999987666666666666663 3333322


Q ss_pred             -EEEe---CCCCeEEEEEeCCCCeEEEEeeC--CCcEEEEEecC---C------ceeecccCCCCceEEEEEeeCCCEEE
Q psy2110         272 -QKYR---FPSPILKVQFHPRNDHMFLVCPM--RHAAVLVDTDG---D------HQIVPIDEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       272 -~~~~---~~~~v~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (622)
                       ....   ....|..+.++|||.++++....  ++.+.+--+..   +      ............+..+.|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             2222   12289999999999998888743  45566554421   1      11112223345778899999998887


Q ss_pred             EEecCC
Q psy2110         337 TGNSKG  342 (622)
Q Consensus       337 ~~~~dg  342 (622)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=96.49  E-value=0.1  Score=54.95  Aligned_cols=182  Identities=12%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             CCCEEEEEeCCC------eEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEE
Q psy2110         205 RGTLLAVGCNDG------RIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECE  271 (622)
Q Consensus       205 ~g~~l~~~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~  271 (622)
                      ++.+++.|+.++      .+..||..+.+....  +.........+.  -+++.++.|+.+     ..+..||..+++..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666666432      467788777654321  111111112222  256677777765     35788888877654


Q ss_pred             EEEeCCCCeEEEEEeCCCCeEEEEeeCC------CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecC--
Q psy2110         272 QKYRFPSPILKVQFHPRNDHMFLVCPMR------HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSK--  341 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d--  341 (622)
                      ..-..+.+....+...-+..+++.|+..      ..+..||..+..-.  ..+......  ..+...+++.++.|+.+  
T Consensus       372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG--GCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC--ceEEEECCEEEEECCccCC
Confidence            4322222221111112234567776632      35778887654321  111111111  12233456666776643  


Q ss_pred             ------CeEEEEeCCCccEEEE--EecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecc
Q psy2110         342 ------GKVLVLSCPALELKAS--FKASTTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQ  392 (622)
Q Consensus       342 ------g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~  392 (622)
                            ..+.+||..+.+-...  +.........+.+  +++.++.|+.+     +.|.+||..
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence                  2388899876653321  1111111112222  56666666543     356777765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.42  E-value=1.1  Score=44.37  Aligned_cols=135  Identities=16%  Similarity=0.232  Sum_probs=73.2

Q ss_pred             eEEEEcCCCCEEEEee-----------CCC-cEEEEecCCc--ccc--cccccccCCCcccccccccceEEEEECCCCCE
Q psy2110         145 VTCAFNKRGTLLAVGC-----------NDG-RIVLWDFLTR--GIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTL  208 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-----------~dg-~i~vw~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  208 (622)
                      +.|+|.++|+++++-.           ..+ .|.+++-.++  ...  ..+....           .....+++.++| +
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-----------~~p~Gi~~~~~G-l   84 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-----------SMVTGLAVAVGG-V   84 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-----------CCccceeEecCC-E
Confidence            5999999999777643           123 6766654332  211  1221111           234678898988 4


Q ss_pred             EEEEeCCCeEEEE-EcCCC-----ce--E-EEecc----CCcCeeEEEEcCCCCEEEEEeCC------------------
Q psy2110         209 LAVGCNDGRIVLW-DFLTR-----GI--A-KIISA----HMHPVCSISWSRNGYKIISASTD------------------  257 (622)
Q Consensus       209 l~~~~~dg~i~iw-d~~~~-----~~--~-~~~~~----~~~~v~~~~~s~~~~~l~s~~~d------------------  257 (622)
                      + +++.. .|..+ +....     +.  + ..+..    +......++|.|||.+.++.+..                  
T Consensus        85 y-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~  162 (367)
T TIGR02604        85 Y-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL  162 (367)
T ss_pred             E-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence            4 44444 44444 43211     11  1 12222    23557889999999866654421                  


Q ss_pred             -CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEE
Q psy2110         258 -NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       258 -~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  295 (622)
                       |.|.-++..+++.. .+. .......++|+|++.. +++
T Consensus       163 ~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l-~~t  200 (367)
T TIGR02604       163 GGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDV-FFC  200 (367)
T ss_pred             CceEEEEecCCCeEE-EEecCcCCCccceECCCCCE-EEE
Confidence             34555555554432 232 2334568999998864 443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.29  E-value=0.013  Score=37.49  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=29.2

Q ss_pred             ceeEEEECCCCCEEEEEe-CCcEEEeecCCcccc
Q psy2110         461 LLLDVVWHPVRPIIASIS-SGVVSLWAQNQVENW  493 (622)
Q Consensus       461 ~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~~~  493 (622)
                      .|..++|+|...+||.+. +|.|.+++++....|
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW   46 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence            399999999999999999 999999999765554

>PHA03098 kelch-like protein; Provisional

Probab=96.28  E-value=0.18  Score=53.17  Aligned_cols=186  Identities=8%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             CCCCEEEEeeCCC------cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEE
Q psy2110         151 KRGTLLAVGCNDG------RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIV  219 (622)
Q Consensus       151 ~d~~~l~s~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~  219 (622)
                      .++..++.|+.++      .+..||..+++....-......         .....+.  -++++.+.|+.+     ..+.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R---------~~~~~~~--~~~~lyv~GG~~~~~~~~~v~  361 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR---------KNPGVTV--FNNRIYVIGGIYNSISLNTVE  361 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc---------ccceEEE--ECCEEEEEeCCCCCEecceEE
Confidence            3456667776542      4677787765442211111000         0112222  256777777754     3467


Q ss_pred             EEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCC
Q psy2110         220 LWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD------NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRN  289 (622)
Q Consensus       220 iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~  289 (622)
                      .||..+.+....  +...... .+++ .-+++.++.|+.+      +.+..||..+.+....-..+.+.  .++.. . +
T Consensus       362 ~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~  437 (534)
T PHA03098        362 SWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-H-D  437 (534)
T ss_pred             EEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-E-C
Confidence            788776553321  1111111 1122 2256666666632      35889998877654433222211  12222 2 3


Q ss_pred             CeEEEEeeCCC--------cEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110         290 DHMFLVCPMRH--------AAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE  353 (622)
Q Consensus       290 ~~~~~~~~~~~--------~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  353 (622)
                      ..+++.|+.+.        .+..||..+..-  +..+.........+  ..+++.++.|+.+     ..+.+||..+.+
T Consensus       438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            45666665432        377788766432  21111111111112  2356666776654     356677766543

>PRK13684 Ycf48-like protein; Provisional

Probab=96.27  E-value=1.3  Score=43.31  Aligned_cols=154  Identities=16%  Similarity=0.130  Sum_probs=87.4

Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccC
Q psy2110         320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAG  398 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~  398 (622)
                      ...+..+.+.+++.+++++ ..|.+..-.-..++.-. ........++++.+.++++.++++ ..|.+++=..+.     
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~-----  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD-----  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC-----
Confidence            4457788888888766554 45544432112222222 222445678999999999876654 456654322221     


Q ss_pred             CCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEE
Q psy2110         399 KDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPII  474 (622)
Q Consensus       399 ~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l  474 (622)
                          .........  ......+..+.+.|+++.++++.  +|.++ .....|+.-.....  ......+.+.|..+++.+
T Consensus       245 ----G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~--~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~  317 (334)
T PRK13684        245 ----LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG--NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF  317 (334)
T ss_pred             ----CCccccccCCccccccceeeEEEcCCCCEEEEcC--CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence                111111111  11223456778999888777665  56554 44555554444332  111237888888888888


Q ss_pred             EEEeCCcEEEeec
Q psy2110         475 ASISSGVVSLWAQ  487 (622)
Q Consensus       475 ~s~~dg~v~iw~~  487 (622)
                      +.+..|.|-.|+-
T Consensus       318 ~~G~~G~il~~~~  330 (334)
T PRK13684        318 VLGQRGVLLRYVG  330 (334)
T ss_pred             EECCCceEEEecC
Confidence            8777898887764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.25  E-value=0.34  Score=48.12  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=80.8

Q ss_pred             eEEEEEeeCCCEEEEEe-----------cCC-eEEEEeCCC--cc--EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy2110         323 SIVASFDRRGQHVVTGN-----------SKG-KVLVLSCPA--LE--LKASFKASTTAIKSIEFARRGNCLLVNTGDRLI  386 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i  386 (622)
                      ...++|+++|+++++-.           ..+ .|.+++-.+  ++  ....+...-...+.+++.++|  |++++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence            44678888888777643           223 677776543  33  223443334456889999988  4444444333


Q ss_pred             EEEecccccccCCCCCCCcc-eeeeccc--cceeeeeEEEcCCCCeEEEeeCC------------------CCeEEEEEC
Q psy2110         387 RVYNHQEVLNAGKDGDPEPI-QKLQDLV--NKTMWKKCCFSGDGEYVCAGSAR------------------QHALYIWEK  445 (622)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~------------------d~~i~iwd~  445 (622)
                      ++.+......  ..+..+.+ ..+....  .+.....++|.|||.+.++-+..                  .+.|+-++.
T Consensus        94 ~~~d~~gdg~--ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        94 FLRDKDGDDK--ADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEeCCCCCCC--CCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3434431000  00011111 1121110  12334578999999876654410                  145666776


Q ss_pred             CCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         446 SVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       446 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      .+++....-.++..  ...++|+|+|.++++-.
T Consensus       172 dg~~~e~~a~G~rn--p~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGFQN--PYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCcCC--CccceECCCCCEEEEcc
Confidence            66554333334332  67899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.17  E-value=1.6  Score=43.51  Aligned_cols=145  Identities=13%  Similarity=0.149  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCc-----EEEEEeCCCCeEEEEEeC---CCCeEEEEeeCCCcEEEEEecCC--c------
Q psy2110         248 GYKIISASTDNNVCIWDVLTGE-----CEQKYRFPSPILKVQFHP---RNDHMFLVCPMRHAAVLVDTDGD--H------  311 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~i~~~d~~~~--~------  311 (622)
                      ...|++|+..|.++||+...+.     .+-..+...+|..+..-+   ......++--.-..+.+|.+...  .      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            3589999999999999986543     344555778888876543   22223333355666777777321  1      


Q ss_pred             -eeecccCC--CCceEEEEEee----C-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         312 -QIVPIDED--SDLSIVASFDR----R-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       312 -~~~~~~~~--~~~~~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                       .+.....|  ......+++-|    . ..+|.+-+.||.+.+|+-+.......+.. .---..+.|.+.-..|++++.+
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCc
Confidence             11111111  12222333333    2 35788889999999999765444333332 2223356788888899999999


Q ss_pred             CcEEEEeccc
Q psy2110         384 RLIRVYNHQE  393 (622)
Q Consensus       384 ~~i~i~d~~~  393 (622)
                      ..|..|....
T Consensus       196 ~~l~~Yky~~  205 (418)
T PF14727_consen  196 WTLECYKYQD  205 (418)
T ss_pred             eeEEEecHHH
Confidence            9999998764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.14  E-value=0.26  Score=51.20  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEF--ARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~--s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      +.-+.-++..++.+....+.|||.+.+.+...-. ...+.|.++.|  .|+++.+++.+-.+.|.+|.-....-......
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3344455555555556689999999887554433 45688999998  47899999999999999986542211111122


Q ss_pred             CCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         403 PEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       403 ~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      ..+++.+.... ...++...+|.++|.++++++   +.++|++..
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~  156 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW  156 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence            23444443221 224567789999998876654   369999854

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.12  E-value=1.3  Score=42.04  Aligned_cols=236  Identities=14%  Similarity=0.165  Sum_probs=106.8

Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CC----CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FP----SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~----~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      ...+..|.|..+..-+++|. .+.| +--.+.|+.-....  ..    ....++.|..  ...++++. .+ +.+...+.
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~-~g-~ll~T~Dg   89 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGE-PG-LLLHTTDG   89 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEE-TT-EEEEESST
T ss_pred             CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcC-Cc-eEEEecCC
Confidence            45788999985555555554 4533 22223333222221  11    2355677754  33455543 33 33333333


Q ss_pred             Cceeeccc---CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         310 DHQIVPID---EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE-LKASFKASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       310 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                      +..-..+.   .-......+....++ .+...+..|.|+.-. ..++ -..........+..+..+++|+++++++....
T Consensus        90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~  167 (302)
T PF14870_consen   90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF  167 (302)
T ss_dssp             TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred             CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence            32222211   111222233333333 333334455443322 2233 22333455577889999999998888876666


Q ss_pred             EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE-CCCCeeEEE-Eec--CCCCc
Q psy2110         386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE-KSVGNLVKI-LHG--TKGEL  461 (622)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd-~~~~~~~~~-~~~--~~~~~  461 (622)
                      +.-|+.-.          ...+.+.. .....+.++.|+|++...+++ . .|.|+.=+ ....+.... +..  ..+..
T Consensus       168 ~~s~~~G~----------~~w~~~~r-~~~~riq~~gf~~~~~lw~~~-~-Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~  234 (302)
T PF14870_consen  168 YSSWDPGQ----------TTWQPHNR-NSSRRIQSMGFSPDGNLWMLA-R-GGQIQFSDDPDDGETWSEPIIPIKTNGYG  234 (302)
T ss_dssp             EEEE-TT-----------SS-EEEE---SSS-EEEEEE-TTS-EEEEE-T-TTEEEEEE-TTEEEEE---B-TTSS--S-
T ss_pred             EEEecCCC----------ccceEEcc-CccceehhceecCCCCEEEEe-C-CcEEEEccCCCCccccccccCCcccCcee
Confidence            66776541          11122221 234556788999998887766 3 77888776 222222111 111  11223


Q ss_pred             eeEEEECCCCCEEEEEeCCcEEEeecCCcccc
Q psy2110         462 LLDVVWHPVRPIIASISSGVVSLWAQNQVENW  493 (622)
Q Consensus       462 v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~~~  493 (622)
                      +.+++|.+++...++++.|.+.. ..++.+.|
T Consensus       235 ~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW  265 (302)
T PF14870_consen  235 ILDLAYRPPNEIWAVGGSGTLLV-STDGGKTW  265 (302)
T ss_dssp             EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-
T ss_pred             eEEEEecCCCCEEEEeCCccEEE-eCCCCccc
Confidence            89999999988888888876543 44444555

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.03  E-value=2  Score=46.21  Aligned_cols=28  Identities=11%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEc
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEK  111 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~  111 (622)
                      ..|..+.+||+|++||..+..  .|.|-.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~--~v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPR--GVVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCC--cEEEEEe
Confidence            456789999999999998854  4555544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630|consensus

Probab=96.00  E-value=0.14  Score=55.30  Aligned_cols=152  Identities=10%  Similarity=0.034  Sum_probs=90.4

Q ss_pred             eeEEEEcCCCCEEEEe--eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEE
Q psy2110         144 AVTCAFNKRGTLLAVG--CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVL  220 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~i  220 (622)
                      +..+...+|+...++.  +.+-.|..||+.+-.........................++.|+|.-. ..++...|+.|++
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            3566777787654443  333478889987643222111000000001111123456778888533 3455667888888


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCCCeEEEE
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~  295 (622)
                      ..+........--......++++|+|.|+.++.|-..|++.-|-.. .+....+.     ....|.+++|......+++.
T Consensus       183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            8765332221111245678999999999999999999999888643 44333333     23678999998877655554


Q ss_pred             e
Q psy2110         296 C  296 (622)
Q Consensus       296 ~  296 (622)
                      +
T Consensus       262 ~  262 (1405)
T KOG3630|consen  262 G  262 (1405)
T ss_pred             c
Confidence            4

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.95  E-value=0.017  Score=36.91  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=27.0

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEec
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSC   30 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~   30 (622)
                      ..|.+++|+|...+||.|..+|.|.|+.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            46889999999999999999999999986

>PHA02790 Kelch-like protein; Provisional

Probab=95.91  E-value=0.52  Score=48.68  Aligned_cols=143  Identities=6%  Similarity=-0.003  Sum_probs=71.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCceEE--EeccCCcCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEEe
Q psy2110         205 RGTLLAVGCND-----GRIVLWDFLTRGIAK--IISAHMHPVCSISWSRNGYKIISASTD--NNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       205 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~  275 (622)
                      ++.++++|+.+     ..+..||..+++...  .+.........+  .-++...+.|+.+  ..+..||..+++....-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            34556667654     246678877655332  121111111122  2366666777653  458889887765544333


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCC---cEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRH---AAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      .+.+....+..--+..+++.|+.++   .+..||..+..-..  .+......  ..+..-+|+..+.|+   .+.+||..
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~--~~~~~~~~~IYv~GG---~~e~ydp~  423 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK--SCALVFGRRLFLVGR---NAEFYCES  423 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc--ceEEEECCEEEEECC---ceEEecCC
Confidence            3323222222222445777776543   46677776543221  11111111  122334566666663   47788887


Q ss_pred             CccE
Q psy2110         351 ALEL  354 (622)
Q Consensus       351 ~~~~  354 (622)
                      +.+-
T Consensus       424 ~~~W  427 (480)
T PHA02790        424 SNTW  427 (480)
T ss_pred             CCcE
Confidence            6543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.91  E-value=3.3  Score=45.03  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=51.4

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCceEEEeccCCcC--------eeEEEEc----------------CCCCEEEEEeCCCcEE
Q psy2110         206 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP--------VCSISWS----------------RNGYKIISASTDNNVC  261 (622)
Q Consensus       206 g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~s~~~d~~i~  261 (622)
                      +..|+.++.++.|.-.|..+|+.+..+......        ...+++.                ..+..++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            456777888889999999999988776533211        1223332                1344788888899999


Q ss_pred             EEECCCCcEEEEEeCCC
Q psy2110         262 IWDVLTGECEQKYRFPS  278 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~~  278 (622)
                      -.|.++|+....+...+
T Consensus       274 ALDA~TGk~~W~fg~~G  290 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNG  290 (764)
T ss_pred             EEECCCCCEEEEecCCC
Confidence            99999999887765443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.91  E-value=2  Score=46.25  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVL  220 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~i  220 (622)
                      ..|..+.++|+|++|+..+..|.+.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            46888999999999999887654433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630|consensus

Probab=95.76  E-value=0.14  Score=55.16  Aligned_cols=143  Identities=16%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             cCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEE--------E----EeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         237 HPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQ--------K----YRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~--------~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      -++..+...+|+...++...  +-.|..||+++-....        .    +.......++.|.|.-....+++..|..|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35666667778765554433  3378999987532111        1    11233456788999877777888888888


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----CCCCEEEEEEcCCCCEEE
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----STTAIKSIEFARRGNCLL  378 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~  378 (622)
                      ++..+................++++|+|.|+.+++|-..|++.-|... ++....+..    ....|.+++|-....+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            887776543333333345567899999999999999999999888743 444443332    146799999987777666


Q ss_pred             EE
Q psy2110         379 VN  380 (622)
Q Consensus       379 ~~  380 (622)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.62  E-value=3  Score=42.36  Aligned_cols=114  Identities=8%  Similarity=0.111  Sum_probs=74.5

Q ss_pred             ceEEEEECCCC-----CEEEEEeCCCeEEEEEcC-----CCceEEEeccCC---c--CeeEEEEcCCCCEEEEEeCCCcE
Q psy2110         196 LAVTCAFNKRG-----TLLAVGCNDGRIVLWDFL-----TRGIAKIISAHM---H--PVCSISWSRNGYKIISASTDNNV  260 (622)
Q Consensus       196 ~v~~~~~s~~g-----~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~---~--~v~~~~~s~~~~~l~s~~~d~~i  260 (622)
                      .|..+.|.|-+     .+||+ .....|.+|.+.     +.+.+..-.++-   -  --..+.|+|....|+.-.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            47889999853     34544 457889999875     222222221111   1  12356799987777665544433


Q ss_pred             EEEECC--CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         261 CIWDVL--TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       261 ~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      .+++++  +.+....+...+.|.+.+|.+||.+++++.+..-.-++||-..+
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            455554  33444556678899999999999999998888777889987543

>PHA02790 Kelch-like protein; Provisional

Probab=95.61  E-value=0.79  Score=47.37  Aligned_cols=142  Identities=11%  Similarity=-0.044  Sum_probs=68.3

Q ss_pred             CCCCEEEEEeCC--CeEEEEEcCCCceEE--EeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEEeC
Q psy2110         204 KRGTLLAVGCND--GRIVLWDFLTRGIAK--IISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       204 ~~g~~l~~~~~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~  276 (622)
                      -+|.+.+.|+.+  ..+..|+..+++...  .+..........  .-+|+..+.|+.++   .+..||..+.+....-..
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            356666777653  357788876554322  121111111112  23677667777543   477899887765443222


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeC
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSC  349 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~  349 (622)
                      +.+....+...-+..+++.|+   ....||..++.-  +..+....... . +.--+|+..++|+.+     ..+..||.
T Consensus       395 ~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~-~~v~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        395 YYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-E-LIIVDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             CCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-E-EEEECCEEEEECCcCCCcccceEEEEEC
Confidence            222111111112344666663   466788765432  22222111111 1 223466777777654     24555655


Q ss_pred             CCc
Q psy2110         350 PAL  352 (622)
Q Consensus       350 ~~~  352 (622)
                      .+.
T Consensus       470 ~~~  472 (480)
T PHA02790        470 RTY  472 (480)
T ss_pred             CCC
Confidence            543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.42  E-value=2.2  Score=39.59  Aligned_cols=174  Identities=12%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             EEEecCCCCeEEEEEcCCCce-----EEEE-eccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEee-CCCcEE
Q psy2110          96 VCAGSARQHALYIWEKSVGNL-----VKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGC-NDGRIV  166 (622)
Q Consensus        96 l~~~~~~~~~i~vwd~~~~~~-----~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~-~dg~i~  166 (622)
                      ++.++++ |+|.-|...-+..     ...+ .+..+.++                ..+++..  .+.+|+.+. ..++|.
T Consensus       103 Fif~tEd-GTisaW~p~v~~t~~~~~~~~~d~s~~gavY----------------kGLAi~~~~~~~~LYaadF~~g~ID  165 (336)
T TIGR03118       103 FLFVTED-GTLSGWAPALGTTRMTRAEIVVDASQQGNVY----------------KGLAVGPTGGGDYLYAANFRQGRID  165 (336)
T ss_pred             EEEEeCC-ceEEeecCcCCcccccccEEEEccCCCccee----------------eeeEEeecCCCceEEEeccCCCceE
Confidence            4566654 9999998543322     1122 12234554                4555543  355666553 578999


Q ss_pred             EEecCCccccc--ccccccCCC-----cccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec--cCCc
Q psy2110         167 LWDFLTRGIAK--IISAHMHPE-----FDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMH  237 (622)
Q Consensus       167 vw~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~  237 (622)
                      |+|-.-.....  .+.....+.     ....+.+.-.|+-..-.++++.=+.|..-|.|-+||+ .+..++++.  +.-.
T Consensus       166 VFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LN  244 (336)
T TIGR03118       166 VFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLN  244 (336)
T ss_pred             EecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCccc
Confidence            99754322110  111110000     0000001111222222333333333444578999996 566777663  2334


Q ss_pred             CeeEEEEcC------CCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------CCeEEEEEeC
Q psy2110         238 PVCSISWSR------NGYKIISASTDNNVCIWDVLTGECEQKYRFP-------SPILKVQFHP  287 (622)
Q Consensus       238 ~v~~~~~s~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~  287 (622)
                      .-+.|+..|      .|.+|+---.||+|..+|..+++.+-.+...       .....+.|..
T Consensus       245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            556677755      4566666667999999999999887777622       2456677755

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2247|consensus

Probab=95.42  E-value=0.0022  Score=61.89  Aligned_cols=138  Identities=12%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED  319 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  319 (622)
                      -...|-+.+.-++.++.+..+..|| +.++.......++....++|..+++.+++.+...+.+.+||+.+......-.+.
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            3456777777788888888899998 456666666677788889999999989999999999999999765332222222


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      ...-.-+.|++.+..++.+...|.+.|++..+.+.+...-.|...++++++.+.+..+.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            22222367899899999999999999999887776666666889999999999876443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.23  E-value=0.51  Score=46.50  Aligned_cols=146  Identities=15%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC--------CEEEEe
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG--------TLLAVG  159 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~--------~~l~s~  159 (622)
                      ....|...|..-+.....++-.|+..|+.+.....|...+                   +.|.|+.        +.|+--
T Consensus       474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv-------------------Vqy~p~~kf~qmt~eqtlvGl  534 (776)
T COG5167         474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV-------------------VQYNPYFKFQQMTDEQTLVGL  534 (776)
T ss_pred             eecCCcceEEecCCCcccceeeecccceeeeEeecCCcce-------------------eecCCchhHHhcCccceEEee
Confidence            3444555665544334788888999999999999888754                   4666643        234433


Q ss_pred             eCCCcEEEEecCC-cccccccccccCCCcccccccccceEEEEE----CCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         160 CNDGRIVLWDFLT-RGIAKIISAHMHPEFDGALDCISLAVTCAF----NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       160 ~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                      |. ..|.-.|.+- |..+.......            .++.-.|    .....++|+++..|.|++||--.......+.+
T Consensus       535 S~-~svFrIDPR~~gNKi~v~esKd------------Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~  601 (776)
T COG5167         535 SD-YSVFRIDPRARGNKIKVVESKD------------YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG  601 (776)
T ss_pred             cc-cceEEecccccCCceeeeeehh------------ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc
Confidence            43 3343334322 21111111110            1111122    22345899999999999999655555566778


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                      ....|..+..+.+|+++++.+. ..+.+-|+.
T Consensus       602 lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         602 LGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            8889999999999999888775 567777764

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=95.20  E-value=5.5  Score=42.77  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=40.6

Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDN----NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      ...+...+..+.|+|+|..++..+.++    .+++.+.. +   ....+...+....|+|++..+++
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g---~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G---LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C---ceeeeecccccceeCCCCCeEEE
Confidence            344667788999999999999887443    34444444 3   22335567788899999987665

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=2.9  Score=38.50  Aligned_cols=188  Identities=13%  Similarity=0.103  Sum_probs=108.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC--CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---E
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH--MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---E  271 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~  271 (622)
                      +..+.++.  ++.+.+..+.-++|.|+.+......+..-  .+--.++..  .|++...+..|.-+.+.|+.+.+.   .
T Consensus        89 ~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          89 FADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceee
Confidence            45556654  56777777888999999876544333221  123334443  588888888677788888876543   2


Q ss_pred             EEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         272 QKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       272 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      ..+.. ......++.+-+   ....+..++.+.+.|+.......  ........+.++..+++..+++...+  -+.+-|
T Consensus       165 grya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd  239 (370)
T COG5276         165 GRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVD  239 (370)
T ss_pred             eeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEe
Confidence            23332 223355666643   45666678889999997653322  11222336677777776666655433  377777


Q ss_pred             CCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         349 CPALELKASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       349 ~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..+.+....+.  ....++.--.+.-.+++...+..+.-+.+-|+.+
T Consensus       240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             cCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence            76655333222  2222221112333466666776676777777763

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=2.4  Score=36.88  Aligned_cols=175  Identities=10%  Similarity=0.060  Sum_probs=100.3

Q ss_pred             CCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110          92 DGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  170 (622)
Q Consensus        92 ~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~  170 (622)
                      +|.++.+.+. ....|++||+.+|+.+..-+-....++     -+|.......+          +.+ .-.+|.-..+|.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-----gEGit~~gd~~----------y~L-Tw~egvaf~~d~  118 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-----GEGITKLGDYF----------YQL-TWKEGVAFKYDA  118 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCcccc-----ccceeeccceE----------EEE-EeccceeEEECh
Confidence            4555555432 235799999999998876554422221     01111111111          222 235788888888


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe----cc-CCcCeeEEEEc
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII----SA-HMHPVCSISWS  245 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~----~~-~~~~v~~~~~s  245 (622)
                      .+-+.+..+.....            -..+  ..|++.|+.+.....++.-|.++-....++    .+ .-..++.+.|-
T Consensus       119 ~t~~~lg~~~y~Ge------------GWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         119 DTLEELGRFSYEGE------------GWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             HHhhhhcccccCCc------------ceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            88766665544321            1233  345666777766666777776654333222    21 11234455554


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-------------CCCeEEEEEeCCCCeEEEEee
Q psy2110         246 RNGYKIISASTDNNVCIWDVLTGECEQKYRF-------------PSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       246 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~  297 (622)
                       +|...|-.-.+..|...+..+|+....+..             ..-.+.+++.|++..++++|-
T Consensus       185 -dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         185 -DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             -ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence             565555555556677778888888776642             234577899998888888773

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.77  E-value=4.4  Score=39.50  Aligned_cols=238  Identities=15%  Similarity=0.159  Sum_probs=114.7

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe-----CCCCeEEEEEeCC---CCeEEEEeeCC-------
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---EQKYR-----FPSPILKVQFHPR---NDHMFLVCPMR-------  299 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-----~~~~v~~~~~~~~---~~~~~~~~~~~-------  299 (622)
                      ..++|+|.|||+.|++ ...|.|++++ ..+..   +..+.     .......++++|+   +..++++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999976665 5699999999 44443   22221     2356789999994   34445444422       


Q ss_pred             -CcEEEEEecCC-------ceee-ccc---CCCCceEEEEEeeCCCEEEEEecC-------------CeEEEEeCCCccE
Q psy2110         300 -HAAVLVDTDGD-------HQIV-PID---EDSDLSIVASFDRRGQHVVTGNSK-------------GKVLVLSCPALEL  354 (622)
Q Consensus       300 -~~i~~~d~~~~-------~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~  354 (622)
                       ..|.-|.....       +.+. ...   ........+.|.|+|.++++.+..             |.|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             23443444332       1111 111   234445679999999766664433             223333322 110


Q ss_pred             -------------EEEE-ecCCCCEEEEEEcCC-CCEEEEE-eCCCcEEEEecccccccC----C-----CC--------
Q psy2110         355 -------------KASF-KASTTAIKSIEFARR-GNCLLVN-TGDRLIRVYNHQEVLNAG----K-----DG--------  401 (622)
Q Consensus       355 -------------~~~~-~~~~~~i~~~~~s~~-~~~l~~~-~~d~~i~i~d~~~~~~~~----~-----~~--------  401 (622)
                                   ...+ .++ .....++|+|. |.++++- +.+..=.|.-+.....-+    .     .+        
T Consensus       160 p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                         0000 112 22457899998 6655443 333332332232211100    0     00        


Q ss_pred             ---CCCcceeeeccccceeeeeEEEcC-------CCCeEEEeeCCCCeEEEEECCCCeeEE---EEecCCCCceeEEEEC
Q psy2110         402 ---DPEPIQKLQDLVNKTMWKKCCFSG-------DGEYVCAGSARQHALYIWEKSVGNLVK---ILHGTKGELLLDVVWH  468 (622)
Q Consensus       402 ---~~~~~~~~~~~~~~~~~~~~~~sp-------dg~~l~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~v~~v~~s  468 (622)
                         ...++..+   ..+.....+.|-.       .|.++++.-. .+.|+...+..+..+.   .+.......+.++++.
T Consensus       239 ~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~  314 (331)
T PF07995_consen  239 CPGFVPPVFAY---PPHSAPTGIIFYRGSAFPEYRGDLFVADYG-GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQG  314 (331)
T ss_dssp             -TTS---SEEE---TTT--EEEEEEE-SSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEE
T ss_pred             CCCcCccceee---cCccccCceEEECCccCccccCcEEEecCC-CCEEEEEeeecCCCccceEEccccCCCCceEEEEc
Confidence               00111112   2223344455543       3445555543 6778877776443222   2223333248999999


Q ss_pred             CCCCEEEEEe-CCcEE
Q psy2110         469 PVRPIIASIS-SGVVS  483 (622)
Q Consensus       469 p~~~~l~s~~-dg~v~  483 (622)
                      |||.+.++.. +|.|+
T Consensus       315 pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  315 PDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTSEEEEEE-TTTTEE
T ss_pred             CCCeEEEEECCCCeEe
Confidence            9999888877 78764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.74  E-value=1.8  Score=37.66  Aligned_cols=173  Identities=9%  Similarity=0.034  Sum_probs=90.7

Q ss_pred             CCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCCCeE
Q psy2110         205 RGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII-SASTDNNVCIWDVLTGECEQKYRFPSPIL  281 (622)
Q Consensus       205 ~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~  281 (622)
                      +|.++.+.+.  ...|++||+.+++.+..-+-....+..=-...-|.++. -.-.+|.-..+|.++-+++..+..++.=.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            3455555543  35699999999887755432211111111111122222 22257888899999988888888777666


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc--CCCCc---eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID--EDSDL---SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                      .++..  +.. ++.+.....++.-|..+-.......  ....+   ...+.| -+|...+-.-....|...+..+|+.+.
T Consensus       135 gLt~d--~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         135 GLTSD--DKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeecC--Ccc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEE
Confidence            66543  443 4444444455555554322111111  01111   111222 134444433344456666777777665


Q ss_pred             EEe------------cCCCCEEEEEEcCCCCEEEEEe
Q psy2110         357 SFK------------ASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       357 ~~~------------~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      .+.            .+....+.+++.|++..|+..+
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            554            2345678899999885555544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.68  E-value=0.48  Score=46.71  Aligned_cols=145  Identities=14%  Similarity=0.220  Sum_probs=94.0

Q ss_pred             CCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe------EEEEeeCCCcEEEEEecCCceeecccC
Q psy2110         246 RNGYKIIS-ASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH------MFLVCPMRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       246 ~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      .+.+.|+. ++....++-.|+..|+.+........+ -+.|.|..+.      .-++|-.+..|.-.|.+-.........
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            34555443 444567888899999999988866666 6777775421      234455666666667653321111111


Q ss_pred             CCCceEEEEE----eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         319 DSDLSIVASF----DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       319 ~~~~~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .....+.-.|    .....++++++..|-|++||--.......+.+-...|..+..+.+|+++++.|. ..+.+-|++
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            1111111112    223459999999999999996655555667777788999999999998888775 467777766

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.57  E-value=1  Score=47.50  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcc-ccccc----c-----cccCCCcccccccccceEEEEEC--CCCCEEEEEeCCCeEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRG-IAKII----S-----AHMHPEFDGALDCISLAVTCAFN--KRGTLLAVGCNDGRIV  219 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~-~~~~~----~-----~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~i~  219 (622)
                      +...|+.|..||.|.+|.+++-. .+...    .     ....+.  -.......++.++++  ...++||+++....|.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC--eEeecCCceeEEEEEecCcceEEEEecCCceEE
Confidence            45589999999999999764310 00000    0     000011  111222357889998  8888999999888898


Q ss_pred             EEEcCCC--c-eEEEeccCCcCeeEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q psy2110         220 LWDFLTR--G-IAKIISAHMHPVCSISWSRNG---Y---KIISASTDNNVCIWDV  265 (622)
Q Consensus       220 iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~d~~i~iwd~  265 (622)
                      ||-+...  + ....-..|...|-+++|-++.   .   ++++++-.|.+.+|++
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8866542  1 111111366789999997633   2   7888888999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.54  E-value=2  Score=34.55  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=68.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC--CCCeEEEeeCCCCeEEEEEC
Q psy2110         368 IEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG--DGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       368 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~d~~i~iwd~  445 (622)
                      -.|......|++++.-+.|.|++.......... ....+..+.-...-..+.+-.|.|  +...|+.|+  ...|..||+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt--~t~llaYDV   80 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDV   80 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEc
Confidence            346666667889999999999987743222111 122333333222222222334543  456777777  457999999


Q ss_pred             CCCeeEEEEecCCCCceeEEEECC----CCCEEEEEeCCcEEEeecCCccc
Q psy2110         446 SVGNLVKILHGTKGELLLDVVWHP----VRPIIASISSGVVSLWAQNQVEN  492 (622)
Q Consensus       446 ~~~~~~~~~~~~~~~~v~~v~~sp----~~~~l~s~~dg~v~iw~~~~~~~  492 (622)
                      ....-+..-.-+.+  |+++.+-.    ..++++.++...|+=+|..+.+.
T Consensus        81 ~~N~d~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   81 ENNSDLFYKEVPDG--VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             ccCchhhhhhCccc--eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            87654443333333  77776632    34566666677777777665443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=4  Score=37.64  Aligned_cols=200  Identities=10%  Similarity=0.027  Sum_probs=111.8

Q ss_pred             EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         271 EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      +..+....-+..+.++.+   .+..+..+..++++|+.+......+..-...-..-.+.-.|++..++..+.-+.+.|+.
T Consensus        80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvs  156 (370)
T COG5276          80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVS  156 (370)
T ss_pred             EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECC
Confidence            334445566677777654   46667778889999998764333222211112233455568888888866568888886


Q ss_pred             Ccc---EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc-ceeeeeEEEcCC
Q psy2110         351 ALE---LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN-KTMWKKCCFSGD  426 (622)
Q Consensus       351 ~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spd  426 (622)
                      +..   +...+......-..++.|  |++-..+..|+-+.+-|+..         +..- .+.++.+ .....++..|++
T Consensus       157 dpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn---------p~sP-vli~~~n~g~g~~sv~vsdn  224 (370)
T COG5276         157 DPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSN---------PHSP-VLIGSYNTGPGTYSVSVSDN  224 (370)
T ss_pred             CCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccC---------CCCC-eEEEEEecCCceEEEEecCC
Confidence            543   444454444444566665  66777788899999999984         2221 2222222 235566777777


Q ss_pred             CCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE-EECCCCCEEEEEe-CCcEEEeecC
Q psy2110         427 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV-VWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v-~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      --|++....   -+.+-|..+.+....+..-..+.+.++ .+.-.+++.+.+. +.-+.+-+++
T Consensus       225 r~y~vvy~e---gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idis  285 (370)
T COG5276         225 RAYLVVYDE---GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDIS  285 (370)
T ss_pred             eeEEEEccc---ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEecc
Confidence            777766653   366777665443333221111112222 2333345555554 5445555554

>KOG2247|consensus

Probab=94.39  E-value=0.015  Score=56.47  Aligned_cols=235  Identities=19%  Similarity=0.264  Sum_probs=130.3

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCc
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGR  164 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~  164 (622)
                      ...|-|.+..|+.++.+ ..+..||-. ++.+..+......+                  .++|..++..++ .+-..+.
T Consensus        39 ~~~w~~e~~nlavaca~-tiv~~YD~a-gq~~le~n~tg~al------------------dm~wDkegdvlavlAek~~p   98 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACAN-TIVIYYDKA-GQVILELNPTGKAL------------------DMAWDKEGDVLAVLAEKTGP   98 (615)
T ss_pred             eeeEecCCCceehhhhh-hHHHhhhhh-cceecccCCchhHh------------------hhhhccccchhhhhhhcCCC
Confidence            45788888778877765 667777743 44444443333333                  778888877554 4556789


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW  244 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  244 (622)
                      +.+|++.+....+.-.+...           .-.-+.|++.+..++.+...|.+.|++..+.+.+...-.|...+++++|
T Consensus        99 iylwd~n~eytqqLE~gg~~-----------s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av  167 (615)
T KOG2247|consen   99 IYLWDVNSEYTQQLESGGTS-----------SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV  167 (615)
T ss_pred             eeechhhhhhHHHHhccCcc-----------hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence            99999987532221111111           0112688999999999989999999998776655555458899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEE--------EeCCCCeEEEEeeCCCcEEEEEec--CCceee
Q psy2110         245 SRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQ--------FHPRNDHMFLVCPMRHAAVLVDTD--GDHQIV  314 (622)
Q Consensus       245 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~  314 (622)
                      .+.+. .+.++.|..+.+-... ++..+.....+....++        |...+..+.-+-+....+..-...  .+....
T Consensus       168 ~lEd~-vil~dcd~~L~v~~qe-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval  245 (615)
T KOG2247|consen  168 TLEDY-VILCDCDNTLSVTTQE-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL  245 (615)
T ss_pred             cccce-eeecCcHHHHHHhhhc-cceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce
Confidence            98774 4555555555443322 23333333222111111        222222221111111111111111  112222


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      .+....+.+.+..|--||. |..+-.-|.|..-.+.+.++
T Consensus       246 ~fq~~~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeL  284 (615)
T KOG2247|consen  246 QFQEKYGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAEL  284 (615)
T ss_pred             EeeecCCceeEEEEecccc-ccccccceeEEEEeccchHH
Confidence            5555666777777777764 34445555565555655543

>KOG1916|consensus

Probab=94.38  E-value=0.043  Score=57.38  Aligned_cols=99  Identities=16%  Similarity=0.263  Sum_probs=61.7

Q ss_pred             CcEEEEecC--CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         163 GRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       163 g~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      |.+.||++.  .|+....+..+........   ...|..+-|-++.-++.++..++.|++...++... ..+.+|...+.
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~---~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~  228 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSD---PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVT  228 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCC---cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcc
Confidence            678899765  3443333322211111111   13455666666777888888899999877654322 34555766555


Q ss_pred             EEE-----------EcCCCCEEEEEeCCCcEEEEEC
Q psy2110         241 SIS-----------WSRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       241 ~~~-----------~s~~~~~l~s~~~d~~i~iwd~  265 (622)
                      .++           .||||+.|+.++.||.+++|.+
T Consensus       229 d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  229 DMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             cHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            543           5889999999999998888865

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.31  E-value=4.5  Score=37.67  Aligned_cols=196  Identities=16%  Similarity=0.145  Sum_probs=114.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcC------CC-ceEEEecc-----CCcCeeEEEEcCCCC------------EE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFL------TR-GIAKIISA-----HMHPVCSISWSRNGY------------KI  251 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~s~~~~------------~l  251 (622)
                      ..+.++++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999999888777778899999986      12 22333331     224567777764322            36


Q ss_pred             EEEeCCCcEEEEECCCCcE-----EEEEe--CCCC-eEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCceeec--ccCC
Q psy2110         252 ISASTDNNVCIWDVLTGEC-----EQKYR--FPSP-ILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQIVP--IDED  319 (622)
Q Consensus       252 ~s~~~d~~i~iwd~~~~~~-----~~~~~--~~~~-v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~  319 (622)
                      +.++.||+|.-|...-+..     ...+.  .... ...+++..  .+..++++--..++|.++|-.-......  +...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7888999999998532222     12222  1122 33455553  3566777777788999998653322111  1100


Q ss_pred             ----------------CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcC------CCC
Q psy2110         320 ----------------SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFAR------RGN  375 (622)
Q Consensus       320 ----------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~------~~~  375 (622)
                                      .-.|+...-.++++.=+.|..-|.|-+||+. +++++++.  +.-..-..|+..|      .+.
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence                            0011112222333333344555789999965 77777774  2223345666655      456


Q ss_pred             EEEEEeCCCcEEEEecc
Q psy2110         376 CLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       376 ~l~~~~~d~~i~i~d~~  392 (622)
                      +|+-.-.||+|..||..
T Consensus       263 lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             eEEeecCCceeEEecCC
Confidence            56655669999999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=93.99  E-value=6.6  Score=38.35  Aligned_cols=119  Identities=11%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEE-EecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         362 TTAIKSIEFARRGNCLLVNTGDRLIRV-YNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                      ...+.++.+.|++.+++++. .|.+.. ++-.          ......+. ......+..+.+.++++.++++.  .|.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g----------g~tW~~~~-~~~~~~l~~i~~~~~g~~~~vg~--~G~~  237 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG----------QTAWTPHQ-RNSSRRLQSMGFQPDGNLWMLAR--GGQI  237 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCC----------CCeEEEee-CCCcccceeeeEcCCCCEEEEec--CCEE
Confidence            45788999999987665544 454432 2211          11112221 12334567789999999887765  5655


Q ss_pred             EEEECCCCeeEEEEecC---CCCceeEEEECCCCCEEEEEeCCcEEEeecCCcccccc
Q psy2110         441 YIWEKSVGNLVKILHGT---KGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSA  495 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~~~~~  495 (622)
                      ++=....|..-.....+   ....+.++++.|++..++.+.+|.+. ...++...|..
T Consensus       238 ~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~  294 (334)
T PRK13684        238 RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEK  294 (334)
T ss_pred             EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeE
Confidence            43234445433322222   11237889999988877766688665 45555566643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.91  E-value=5  Score=36.67  Aligned_cols=184  Identities=11%  Similarity=0.038  Sum_probs=118.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY--  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--  274 (622)
                      -..++-.|||..-+++...+.|--.|..+++....--+....-..+..-|||..-++-+.. .|.-.|-++.+..+--  
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            4567888999988888888888888888888766555555566778888888766654433 4555565555433211  


Q ss_pred             -e-CCCCeEEEEEeCCCCeEEEEeeC---------CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         275 -R-FPSPILKVQFHPRNDHMFLVCPM---------RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       275 -~-~~~~v~~~~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                       . .........|.+.|. +.+++..         .+.+.+|+..          ....-+.++..|+|...++.-.+..
T Consensus       143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagna  211 (353)
T COG4257         143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNA  211 (353)
T ss_pred             cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccc
Confidence             1 235677788888887 4444432         1223333332          2334557788999998888777777


Q ss_pred             EEEEeCCCccEEE--EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         344 VLVLSCPALELKA--SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       344 i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |-..|..++....  .-......-+.+--+|.|+.-++....+.+..||..
T Consensus       212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs  262 (353)
T COG4257         212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS  262 (353)
T ss_pred             eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence            8777776663221  111212344556667888877777777888888776

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.88  E-value=0.16  Score=31.41  Aligned_cols=31  Identities=10%  Similarity=0.190  Sum_probs=25.9

Q ss_pred             CcceEEEEccCC---cEEEeccCCCeEEEEeccc
Q psy2110           2 DLSIVASFDRRG---QHVVTGNSKGKVLVLSCPA   32 (622)
Q Consensus         2 ~~V~~~~fspdg---~~latg~~dg~v~vwd~~~   32 (622)
                      .+|.++.|||+.   .+||..-..|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            378999999844   5999888889999999763

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.68  E-value=1.8  Score=45.24  Aligned_cols=107  Identities=15%  Similarity=0.238  Sum_probs=71.8

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEc--CCCCEEEEEeCCCcEEEEECC---------
Q psy2110         199 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWS--RNGYKIISASTDNNVCIWDVL---------  266 (622)
Q Consensus       199 ~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~d~~i~iwd~~---------  266 (622)
                      -+.-+.-++..++.+....+.|||...+.....-. ...+.|..+.|.  |+|+.+++.+..+.|.++--.         
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p  113 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP  113 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence            33444456666666667789999998876443322 456889999996  589999999999999998542         


Q ss_pred             CCcEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         267 TGECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       267 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      +...++.+.    .+.+|.+..|.++|.  ++++ .++.+.++|-.
T Consensus       114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~-sGNqlfv~dk~  156 (631)
T PF12234_consen  114 SWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVG-SGNQLFVFDKW  156 (631)
T ss_pred             ccceeEEEEeecCCCCCccceeEecCCe--EEEE-eCCEEEEECCC
Confidence            112344443    347899999999985  2322 24567776643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN02193 nitrile-specifier protein

Probab=93.67  E-value=9.8  Score=39.28  Aligned_cols=146  Identities=11%  Similarity=-0.017  Sum_probs=70.8

Q ss_pred             CCEEEEEeCC-------CeEEEEEcCCCceEEEeccC---C--cCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q psy2110         206 GTLLAVGCND-------GRIVLWDFLTRGIAKIISAH---M--HPVCSISWSRNGYKIISASTD-----NNVCIWDVLTG  268 (622)
Q Consensus       206 g~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~---~--~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~  268 (622)
                      +.+++.|+.+       ..+.+||+.+.+-.. +...   .  .........-+++.++.|+.+     +.+.++|+.+.
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            4555666542       246778877655332 1110   0  011111112245566666654     35889999887


Q ss_pred             cEEEEEeC---CCCeEEEEEeCCCCeEEEEeeCCC-----cEEEEEecCCceeecc-----cCCCCceEEEEEeeCCCEE
Q psy2110         269 ECEQKYRF---PSPILKVQFHPRNDHMFLVCPMRH-----AAVLVDTDGDHQIVPI-----DEDSDLSIVASFDRRGQHV  335 (622)
Q Consensus       269 ~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l  335 (622)
                      +..+.-..   +.+....+....+..+++.++.++     .+..||+.+..-....     ....... .+ ..-+++.+
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~-~~~~gkiy  332 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GL-EVVQGKVW  332 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EE-EEECCcEE
Confidence            65543222   112111112222445777776543     3566776654321110     0111111 12 22357777


Q ss_pred             EEEecC----CeEEEEeCCCccE
Q psy2110         336 VTGNSK----GKVLVLSCPALEL  354 (622)
Q Consensus       336 ~~~~~d----g~i~i~d~~~~~~  354 (622)
                      +.++.+    ..+.+||+.+.+-
T Consensus       333 viGG~~g~~~~dv~~yD~~t~~W  355 (470)
T PLN02193        333 VVYGFNGCEVDDVHYYDPVQDKW  355 (470)
T ss_pred             EEECCCCCccCceEEEECCCCEE
Confidence            777655    4588999887654

>KOG3616|consensus

Probab=93.44  E-value=7.6  Score=40.63  Aligned_cols=64  Identities=23%  Similarity=0.460  Sum_probs=43.4

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      +++.-+|.++.++.+..||.|++|++...+..+......++            ..+.|...|  |++...|..+.-|.
T Consensus        18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~------------~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPK------------ENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             eeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCc------------cceeeeccc--eEEEeccchhheee
Confidence            58888899999999999999999998776554443333222            234555544  45555566666664

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.42  E-value=0.58  Score=29.00  Aligned_cols=41  Identities=7%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             CCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110         425 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       425 pdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                      |++++|+++...+++|.++|..+++.+..+.... . ...++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~-P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-Y-PFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-C-CceEEe
Confidence            6888888887778899999999999888877633 2 455555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1898|consensus

Probab=93.14  E-value=16  Score=40.14  Aligned_cols=72  Identities=13%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             eeEEEEcCCC------CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC------EEEE
Q psy2110         144 AVTCAFNKRG------TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT------LLAV  211 (622)
Q Consensus       144 v~~~~~s~d~------~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~------~l~~  211 (622)
                      +.|+++.++.      ++++.++.|+++++..+.-...+..+....-+...      ....-+....++.      +|.+
T Consensus       585 vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~------~s~~iv~~~~~~~~~~~~L~l~~  658 (1205)
T KOG1898|consen  585 VACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPP------ESLCIVEMEATGGTDVAQLYLLI  658 (1205)
T ss_pred             ehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCc------cceEEEEecccCCccceeEEEEe
Confidence            3578887765      57999999999999998866666655544322111      1112223333332      5667


Q ss_pred             EeCCCeEEEE
Q psy2110         212 GCNDGRIVLW  221 (622)
Q Consensus       212 ~~~dg~i~iw  221 (622)
                      |-.+|.+.-+
T Consensus       659 GL~NGvllR~  668 (1205)
T KOG1898|consen  659 GLRNGVLLRF  668 (1205)
T ss_pred             cccccEEEEE
Confidence            7777776544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.14  E-value=0.63  Score=42.00  Aligned_cols=66  Identities=18%  Similarity=0.305  Sum_probs=50.9

Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-------Eec------CCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-------LHG------TKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-------~~~------~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      .+..++++|++.+. +|.+++||+.+++.+..       +..      .....|..+..+.+|.-|++-++|..+.|+.+
T Consensus        17 ~l~~~~~~Ll~iT~-~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITS-SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeC-CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            56678899988887 99999999998876432       121      12233899999999998888888889999875

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280|consensus

Probab=93.04  E-value=5.7  Score=41.68  Aligned_cols=198  Identities=8%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee---cccCCCCceEEEEEeeCCC
Q psy2110         258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV---PIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~  333 (622)
                      -.|+|+++. |+.+..+. ....+..+.|+.+..  +++-..+|.+++|++.......   -.......|..+.+..+|-
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            458888854 66655554 444888999998775  6666789999999986543222   1122233344455555553


Q ss_pred             EEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEE--cCCCC-EEEEEeCCCc--EEEEecccccccCCCCCCCcce
Q psy2110         334 HVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEF--ARRGN-CLLVNTGDRL--IRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       334 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~--s~~~~-~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      .+.  ..+|.+.+.+-.....+.++.. ........+|  .+++. ......-+-.  ..++....          ...+
T Consensus       141 avl--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~----------~~~q  208 (829)
T KOG2280|consen  141 AVL--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEE----------SRVQ  208 (829)
T ss_pred             EEE--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceec----------cccc
Confidence            333  3445554443222222222221 1111111222  12211 1000000100  01111110          1111


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                      ...-......+..+..||+.++|+.-.. .|.|.+-+++..+.+..+......+...++|.-+.
T Consensus       209 ~~~~~~~~~~~~ki~VS~n~~~laLyt~-~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  209 LHALSWPNSSVVKISVSPNRRFLALYTE-TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ccccCCCCceEEEEEEcCCcceEEEEec-CCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            1111112355677899999999998886 88899988887777776664333335578887655

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=92.72  E-value=8.9  Score=36.10  Aligned_cols=127  Identities=12%  Similarity=0.055  Sum_probs=73.5

Q ss_pred             EEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         220 LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       220 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ++|+.+++.+..  +. .-..+..|. +|++.++-+..|.+.-+|..+|+.......++....+.|.  |..+++..+.-
T Consensus       189 vidv~s~evl~~--GL-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~  262 (335)
T TIGR03032       189 VIDIPSGEVVAS--GL-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKL  262 (335)
T ss_pred             EEEeCCCCEEEc--Cc-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccc
Confidence            356666654421  11 112234454 6777788888899999999889888888888889999998  65444433211


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCC
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGN  375 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~  375 (622)
                              +.   -..+       ..+.....-+..     ..-|.+.|+++|..+..++  +.-..+..++.-|.-+
T Consensus       263 --------R~---~~~f-------~glpl~~~l~~~-----~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r  317 (335)
T TIGR03032       263 --------RE---SRVF-------GGLPIEERLDAL-----GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVR  317 (335)
T ss_pred             --------cC---CCCc-------CCCchhhhhhhh-----cccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence                    10   0000       001011000000     1238899999999887665  3445667777776533

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.71  E-value=13  Score=37.77  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--EEEEe-----cCCCCEEEEEEcCCC
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--KASFK-----ASTTAIKSIEFARRG  374 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-----~~~~~i~~~~~s~~~  374 (622)
                      .....++|.|+|+++++--..|.|++++..++..  +..+.     ........|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3456789999998777765579999998655432  22111     135678899999885

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.70  E-value=12  Score=37.43  Aligned_cols=147  Identities=15%  Similarity=0.073  Sum_probs=83.9

Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         325 VASFDRRGQHVVTGNSKGKVLVLSCPALEL--KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      .+..+++|.+++.+..-..++-||-  +..  ...-......+.++.+.+++..++++ ..|.+..-+-.        +.
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~--------G~  311 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGT--------GL  311 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCC--------CC
Confidence            3456677777776654433333432  221  11222334668899999999866555 55665442221        11


Q ss_pred             CC---cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEE
Q psy2110         403 PE---PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       403 ~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~  477 (622)
                      ..   .+...........+..+.|.+++..+++|.  .|.++.. ...|+.-.....  .-...++.+.|.++++.++++
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~--~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG--SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEEC--CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence            11   122222222224467788999988888776  5655544 455555444331  111238899999888888888


Q ss_pred             eCCcEEEe
Q psy2110         478 SSGVVSLW  485 (622)
Q Consensus       478 ~dg~v~iw  485 (622)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            88887655

>PLN02153 epithiospecifier protein

Probab=92.47  E-value=12  Score=36.84  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=34.1

Q ss_pred             CCCEEEEEeCC-------CeEEEEEcCCCceEEEecc---CCc---CeeEEEEcCCCCEEEEEeCC-----CcEEEEECC
Q psy2110         205 RGTLLAVGCND-------GRIVLWDFLTRGIAKIISA---HMH---PVCSISWSRNGYKIISASTD-----NNVCIWDVL  266 (622)
Q Consensus       205 ~g~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~---~~~---~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~  266 (622)
                      ++++++.|+.+       ..+.+||+.+.+-...-..   ...   ....+.+  +++.++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34566666542       3577888877543321110   000   1112222  45666676653     358889988


Q ss_pred             CCcEEE
Q psy2110         267 TGECEQ  272 (622)
Q Consensus       267 ~~~~~~  272 (622)
                      +.+...
T Consensus       110 t~~W~~  115 (341)
T PLN02153        110 KNEWTF  115 (341)
T ss_pred             CCEEEE
Confidence            766543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.41  E-value=10  Score=36.03  Aligned_cols=176  Identities=12%  Similarity=0.078  Sum_probs=95.9

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-----CEEEEe-eCCCcEEEEecCCccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-----TLLAVG-CNDGRIVLWDFLTRGIAK  177 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-----~~l~s~-~~dg~i~vw~~~~~~~~~  177 (622)
                      -.|.+||+.+++.++++.-+.....           ..+....+.+....     .++..+ +..+-|.|+|+.+++..+
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~-----------~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~R  102 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAP-----------PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWR  102 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS------------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEE
T ss_pred             cEEEEEECCCCcEEEEEECChHHcc-----------cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEE
Confidence            3788999999999888776544331           12223466665421     233333 334579999999987766


Q ss_pred             ccccccCCCcc--------cccccccceEEEEECC---CCCEEEEEeCCCeEEEEEcCC-----Cc---------eEEEe
Q psy2110         178 IISAHMHPEFD--------GALDCISLAVTCAFNK---RGTLLAVGCNDGRIVLWDFLT-----RG---------IAKII  232 (622)
Q Consensus       178 ~~~~~~~~~~~--------~~~~~~~~v~~~~~s~---~g~~l~~~~~dg~i~iwd~~~-----~~---------~~~~~  232 (622)
                      .+..+......        ..+.....+..++.+|   +|+.|+.....+. ++|.+.+     ..         .++.+
T Consensus       103 v~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l  181 (287)
T PF03022_consen  103 VLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL  181 (287)
T ss_dssp             EETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE
T ss_pred             EecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec
Confidence            66554433321        0112223366677765   7778877765432 3443322     11         11222


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeC---CCCeEEEEEeC--CCCe
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG----ECEQKYRF---PSPILKVQFHP--RNDH  291 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~---~~~v~~~~~~~--~~~~  291 (622)
                      -........++++++|..+++--..+.|..|+..+.    ........   -..+..+.+.+  ++..
T Consensus       182 G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  182 GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence            111235667888999988888888899999998862    22222222   23567788887  5553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.33  E-value=0.86  Score=28.20  Aligned_cols=36  Identities=6%  Similarity=0.120  Sum_probs=27.8

Q ss_pred             CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcc
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE  126 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~  126 (622)
                      |++++|.++...++.|.++|..+++.+..+.....+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P   36 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP   36 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC
Confidence            678888877666689999999999888877664333

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.15  E-value=18  Score=38.37  Aligned_cols=94  Identities=19%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             eEEEEcCCCCEEEEeeCCC-----cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDG-----RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV  219 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  219 (622)
                      +.+.|-|+|..++|-+.||     .|.++.-+.         -.+..+.-...+...+..++|+-....++.+ ..+.++
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG---------LrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~  319 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNG---------LRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLK  319 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCC---------cccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEE
Confidence            4689999999999977554     244443221         1111222222333345666777666656554 356899


Q ss_pred             EEEcCCCceEEEeccCCcCeeEEEEcCCC
Q psy2110         220 LWDFLTRGIAKIISAHMHPVCSISWSRNG  248 (622)
Q Consensus       220 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  248 (622)
                      +|-..+-...-...-.-..+.-+.|+|..
T Consensus       320 lwttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         320 LWTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEccceEEEEEEeecCCCcceeeecccc
Confidence            99755433222222223456678899843

>KOG2280|consensus

Probab=92.12  E-value=18  Score=38.22  Aligned_cols=171  Identities=13%  Similarity=0.185  Sum_probs=87.4

Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCC
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRN  289 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~  289 (622)
                      .-.|+||++ +|+.+..+.-..+.+-.+.|+.+. .|++...+|++++|++.. +.+....     ....|..+.+..+|
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            345888885 555555554444588899999765 577788999999999863 3332211     22345555555444


Q ss_pred             CeEEEEeeCCCcEEEEEecCCceeecccC---CCCceEEE-EEeeCCC--EEEEEe-cCCeEEEEeCCCcc-EEEEEecC
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDHQIVPIDE---DSDLSIVA-SFDRRGQ--HVVTGN-SKGKVLVLSCPALE-LKASFKAS  361 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~  361 (622)
                        ++ +-..++.+.+..-........+..   ......+- ++.|...  .++--. ..+ ..++...... ....+...
T Consensus       140 --Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~  215 (829)
T KOG2280|consen  140 --VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP  215 (829)
T ss_pred             --eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC
Confidence              23 333344444333222212222111   11111111 1222111  111100 111 1111111111 11222223


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ...+..+..||+.++|+--+..|.|.+-+.+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D  246 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSID  246 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence            4667889999999999999999999988776

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=91.96  E-value=16  Score=37.28  Aligned_cols=312  Identities=14%  Similarity=0.144  Sum_probs=141.7

Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      .|..+.+...|. +-.|+.|| +..||..+++..+.-......          .|..+..+-.|+ |.+|+.+| +++.+
T Consensus       166 ~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk----------~I~al~~d~qg~-LWVGTdqG-v~~~e  231 (671)
T COG3292         166 PVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDK----------AINALIADVQGR-LWVGTDQG-VYLQE  231 (671)
T ss_pred             cceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchh----------hHHHHHHHhcCc-EEEEeccc-eEEEc
Confidence            345777777774 55666666 666777776655544333211          233444444454 56777665 66666


Q ss_pred             cCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-EeC---CCCeEEEEEeCCCCeEEEEee
Q psy2110         223 FLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK-YRF---PSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       223 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~---~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      .+..+...... -..+.|..+.-..+| .+-.|+..|..+ ........... .+.   -+.|.++....+|.  +-+++
T Consensus       232 ~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs--LWv~t  307 (671)
T COG3292         232 AEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS--LWVGT  307 (671)
T ss_pred             hhhccccccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC--Eeeec
Confidence            55422111111 122334444433344 345555544332 22222221111 111   13345555555554  44555


Q ss_pred             CCCcEEEEEecCCceeecccCCCCc-eEEEEEee--CCCEEEEEecCCeEEEEeCCCccEEEEE-ecCCCCEEEEEEcCC
Q psy2110         298 MRHAAVLVDTDGDHQIVPIDEDSDL-SIVASFDR--RGQHVVTGNSKGKVLVLSCPALELKASF-KASTTAIKSIEFARR  373 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~  373 (622)
                      .++.+++-+-.- .....+....+. +...+..|  .+..+-.....|.+.+-+-.++..+... +.....|+.+++..+
T Consensus       308 ~~giv~~~~a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~  386 (671)
T COG3292         308 YGGIVRYLTADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSR  386 (671)
T ss_pred             cCceEEEecchh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccC
Confidence            555444433221 111111111111 11111111  2223333334444555555666655442 233455677777775


Q ss_pred             CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE
Q psy2110         374 GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI  453 (622)
Q Consensus       374 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~  453 (622)
                      ++ +-.++...-+..|+..+        ........ .......+..+-=.|+++ |..|+. +|.++. +.+.++....
T Consensus       387 g~-lWlgs~q~GLsrl~n~n--------~~avlde~-agl~ss~V~aived~dns-LWIGTs-~Glvk~-~pe~~~v~n~  453 (671)
T COG3292         387 GR-LWLGSMQNGLSRLDNKN--------EWAVLDED-AGLPSSEVSAIVEDPDNS-LWIGTS-GGLVKR-DPESGRVLNL  453 (671)
T ss_pred             Cc-EEEEecccchhhhccCC--------cccccccc-cCCcccceeeeeecCCCC-EEEecc-CCeEec-Cccccchhcc
Confidence            55 55555554455555552        01111111 112223445556678888 556665 664432 3333333322


Q ss_pred             Ee----cCCCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110         454 LH----GTKGELLLDVVWHPVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       454 ~~----~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~  487 (622)
                      +.    +..+..|..+...|++++-+.+++| |..|+-
T Consensus       454 ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~s  490 (671)
T COG3292         454 LNPGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWES  490 (671)
T ss_pred             cccccCcCCcchhhhhccCCCCceEEEecce-eeeecc
Confidence            21    2223347788889999865544444 355553

>KOG4460|consensus

Probab=91.84  E-value=9.5  Score=38.27  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=18.7

Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEE
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLV  346 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i  346 (622)
                      |..+..++.|..++..+.+|.+..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vM  129 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVM  129 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEE
Confidence            556778899999999999985443

>KOG1916|consensus

Probab=91.69  E-value=0.34  Score=51.07  Aligned_cols=125  Identities=16%  Similarity=0.229  Sum_probs=71.7

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC-
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-  224 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-  224 (622)
                      .+-|-++..++..+-.+++|++.++.+... ..+..|.....+-..-..+.+.--..||||+.++.++.||.++.|.+. 
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            334444666777788889999887766433 334444332221111111112223489999999999999999988764 


Q ss_pred             C----CceEEEeccCC-cCeeEEEEcCCC---------CEEEEEeC-CCcEEEEECCCCcEE
Q psy2110         225 T----RGIAKIISAHM-HPVCSISWSRNG---------YKIISAST-DNNVCIWDVLTGECE  271 (622)
Q Consensus       225 ~----~~~~~~~~~~~-~~v~~~~~s~~~---------~~l~s~~~-d~~i~iwd~~~~~~~  271 (622)
                      +    ..++...+.|. ++-.|.-+..+-         .++++++. ...+++|.....+|.
T Consensus       267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            2    23455566666 332232233221         13444443 456889987776666

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.58  E-value=15  Score=36.12  Aligned_cols=195  Identities=13%  Similarity=0.135  Sum_probs=105.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEe----CCCCe--EEEEeeCC---CcEEEEEecCC-ceeec
Q psy2110         246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFH----PRNDH--MFLVCPMR---HAAVLVDTDGD-HQIVP  315 (622)
Q Consensus       246 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~----~~~~~--~~~~~~~~---~~i~~~d~~~~-~~~~~  315 (622)
                      |..++++...+++-+.+||+. |+.++.+. .+.++.+..-    -.++.  +++++..+   ..|++|.+... ..+..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            345678888888899999987 55555554 2334433321    13333  23333332   46889988642 22322


Q ss_pred             ccC-------CCCceEEEEEe--e-CCC-EEEEEecCCeEEEEeCC---Cc----cEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         316 IDE-------DSDLSIVASFD--R-RGQ-HVVTGNSKGKVLVLSCP---AL----ELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       316 ~~~-------~~~~~~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      +..       ....++.+|+-  + +|. ++++...+|.+..|.+.   ++    +++++|... ..+..+.......+|
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~-sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG-SQPEGCVVDDETGRL  222 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S-S-EEEEEEETTTTEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC-CcceEEEEecccCCE
Confidence            221       12235566653  3 354 55667788988777653   33    467777764 478888898888899


Q ss_pred             EEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE--EEcCCC-CeEEEeeCCCCeEEEEECCC
Q psy2110         378 LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC--CFSGDG-EYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       378 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg-~~l~~~~~~d~~i~iwd~~~  447 (622)
                      ..+-.+.-|.-|+.+....    .....+.......-...+-.+  ...++| .||++++..+++..||+...
T Consensus       223 YvgEE~~GIW~y~Aep~~~----~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGG----NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-----S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             EEecCccEEEEEecCCCCC----CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999988788887762100    011112111111111222233  334454 47888877788999999875

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.34  E-value=1.1  Score=27.84  Aligned_cols=32  Identities=19%  Similarity=0.096  Sum_probs=25.8

Q ss_pred             cCeeEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q psy2110         237 HPVCSISWSRNG---YKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       237 ~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~~~~  268 (622)
                      +.|.++.|||+.   .+|+.+-.-+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   47777777899999999853

It contains a characteristic DLL sequence motif.

>KOG4659|consensus

Probab=91.10  E-value=31  Score=39.02  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=15.0

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEc
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEK  111 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~  111 (622)
                      .++|+.+|....+-+   ..|++.|-
T Consensus       479 GIa~dk~g~lYfaD~---t~IR~iD~  501 (1899)
T KOG4659|consen  479 GIAFDKMGNLYFADG---TRIRVIDT  501 (1899)
T ss_pred             ceeEccCCcEEEecc---cEEEEecc
Confidence            478888876554433   46888774

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.09  E-value=1.7  Score=42.32  Aligned_cols=161  Identities=12%  Similarity=0.131  Sum_probs=86.0

Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE-EE-ecCCC----CEE-EEEEcCCCCEEEEEeCCCcEEE
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-SF-KASTT----AIK-SIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~----~i~-~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      +......+..+-..|+|+.+++-+. ..+.++++.+..... ++ ....+    .|+ ++..-..|..|++...||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4444556667788999999888665 568888876543211 11 11111    121 2222345667888888998876


Q ss_pred             E-ecccccccCCCCCCCcceeeeccccc-eeeeeEEEcCC-C-CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110         389 Y-NHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGD-G-EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD  464 (622)
Q Consensus       389 ~-d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spd-g-~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  464 (622)
                      | |.+.      .+. ..+...+...-. ..+.  ...|+ . +-+++-. ..|++.++.....+.+-.-..-. . +.-
T Consensus       295 WFdvr~------~~~-p~l~h~R~f~l~pa~~~--~l~pe~~rkgF~~l~-~~G~L~~f~st~~~~lL~~~~~~-~-~~~  362 (733)
T COG4590         295 WFDVRR------DGQ-PHLNHIRNFKLAPAEVQ--FLLPETNRKGFYSLY-RNGTLQSFYSTSEKLLLFERAYQ-A-PQL  362 (733)
T ss_pred             eeeeec------CCC-CcceeeeccccCcccce--eeccccccceEEEEc-CCCceeeeecccCcceehhhhhc-C-cce
Confidence            6 4442      111 111111111000 0000  12222 2 2233333 36777766644433332222222 2 677


Q ss_pred             EEECCCCCEEEEEeCCcEEEeecCC
Q psy2110         465 VVWHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       465 v~~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      +++||.+.+|++-..|.++++.++.
T Consensus       363 ~~~Sp~~~~Ll~e~~gki~~~~l~N  387 (733)
T COG4590         363 VAMSPNQAYLLSEDQGKIRLAQLEN  387 (733)
T ss_pred             eeeCcccchheeecCCceEEEEecC
Confidence            8999999999988888999998864

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.07  E-value=16  Score=35.65  Aligned_cols=155  Identities=11%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             CceEEEEEeeCCCEEEEEecCCe------EEEEeCCC--c--cEE-----EEEecCCC--------CEEEEEEcCCCCEE
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGK------VLVLSCPA--L--ELK-----ASFKASTT--------AIKSIEFARRGNCL  377 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~------i~i~d~~~--~--~~~-----~~~~~~~~--------~i~~~~~s~~~~~l  377 (622)
                      +....+.+.+++..+++-+.+|.      +..+.+..  +  ..+     ..+....+        ..-+|++.++|.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            34566777755555555566665      55554432  1  011     11111111        34478887788877


Q ss_pred             EEEeCC------CcEEEEecccccccCCCCCCCcceee----eccccceeeeeEEEcCCCCeEEEeeCC----CC-----
Q psy2110         378 LVNTGD------RLIRVYNHQEVLNAGKDGDPEPIQKL----QDLVNKTMWKKCCFSGDGEYVCAGSAR----QH-----  438 (622)
Q Consensus       378 ~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~----d~-----  438 (622)
                      ++.-.+      ..|+.++........ ..-+..+..-    ........+-+++++|||+.|+++...    |+     
T Consensus       100 is~E~~~~~~~~p~I~~~~~~G~~~~~-~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLDGRVIRR-FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCCCcccce-EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            766556      678888765211000 0000100000    233344556689999999966655431    11     


Q ss_pred             ------eEEEEECCC-CeeEEEE--ecC------CCCceeEEEECCCCCEEEE
Q psy2110         439 ------ALYIWEKSV-GNLVKIL--HGT------KGELLLDVVWHPVRPIIAS  476 (622)
Q Consensus       439 ------~i~iwd~~~-~~~~~~~--~~~------~~~~v~~v~~sp~~~~l~s  476 (622)
                            .|..||..+ ++....+  .-.      ....|..+.+.+++++|+-
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  234455544 3222222  211      2234899999999987664

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.82  E-value=19  Score=35.90  Aligned_cols=218  Identities=17%  Similarity=0.116  Sum_probs=114.0

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                      .+.++..+|.|.-.|..++..+-........         ..+..-.+..+|+ ++.++.++.++.+|..+++.+.....
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~---------~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~  139 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAV---------AQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNV  139 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcc---------eeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEec
Confidence            4445567787877787777644222111100         0111222223666 66788889999999989998888776


Q ss_pred             CC-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC-eEEEEEeC-CCCeEEEEeeC--CCcEEEEEecC
Q psy2110         235 HM-HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP-ILKVQFHP-RNDHMFLVCPM--RHAAVLVDTDG  309 (622)
Q Consensus       235 ~~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-v~~~~~~~-~~~~~~~~~~~--~~~i~~~d~~~  309 (622)
                      .. ..+.......++ .++.++.++.+...|..+|+..-.+....+ -......| -....++.+..  ++.+.-++...
T Consensus       140 ~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         140 GGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             CCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccC
Confidence            55 111222222233 344444679999999998988777654332 00000111 01113444444  44566666655


Q ss_pred             Cceeeccc----CCCC------ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         310 DHQIVPID----EDSD------LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       310 ~~~~~~~~----~~~~------~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      +.......    ....      .+..-...- +..++.++.++.+...+..+++.+-.+... ..      . ++.-+.+
T Consensus       219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-~~------~-~~~~~~~  289 (370)
T COG1520         219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG-GS------V-QGSGLYT  289 (370)
T ss_pred             CcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc-cE------e-ccCCeeE
Confidence            54443321    1111      111111111 223356667788888999999988877754 11      1 1111222


Q ss_pred             E---eCCCcEEEEecc
Q psy2110         380 N---TGDRLIRVYNHQ  392 (622)
Q Consensus       380 ~---~~d~~i~i~d~~  392 (622)
                      +   ..||.+.++...
T Consensus       290 ~~~~~~dG~v~~~~~~  305 (370)
T COG1520         290 TPVAGADGKVYIGFTD  305 (370)
T ss_pred             EeecCCCccEEEEEec
Confidence            2   257888888654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.79  E-value=5.9  Score=36.24  Aligned_cols=141  Identities=9%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C--CcEEEEECCC----CcEEE---EEeCCCCeEEEEEeC
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D--NNVCIWDVLT----GECEQ---KYRFPSPILKVQFHP  287 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d--~~i~iwd~~~----~~~~~---~~~~~~~v~~~~~~~  287 (622)
                      -.+||+.+++....-....-.+.+-.+-+||++|.+|+. +  ..+++++...    .....   .+.....--++...|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            457888887653222222223334456789999998875 2  3588887654    11111   122333344566678


Q ss_pred             CCCeEEEEeeCCCcEEEEEecCC-ceeec--cc------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE
Q psy2110         288 RNDHMFLVCPMRHAAVLVDTDGD-HQIVP--ID------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~d~~~~-~~~~~--~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                      ||+.+++.|......-+|..... .....  +.      .....--.+...|+|+.++.+..+.  .|||..+.+.++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            88865555555444555554221 11111  11      1112222466789999999988764  56788877776666


Q ss_pred             ec
Q psy2110         359 KA  360 (622)
Q Consensus       359 ~~  360 (622)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            54

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.71  E-value=18  Score=35.58  Aligned_cols=16  Identities=25%  Similarity=0.256  Sum_probs=11.2

Q ss_pred             CcEEEEECCCCcEEEE
Q psy2110         258 NNVCIWDVLTGECEQK  273 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~  273 (622)
                      ..+.+||..+.+....
T Consensus       168 ~~v~~YDp~t~~W~~~  183 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNL  183 (346)
T ss_pred             ceEEEEECCCCceeEC
Confidence            4688899887765543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.70  E-value=40  Score=39.49  Aligned_cols=269  Identities=13%  Similarity=0.142  Sum_probs=130.1

Q ss_pred             ceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCc------e--EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         196 LAVTCAFNKRGTL-LAVGCNDGRIVLWDFLTRG------I--AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       196 ~v~~~~~s~~g~~-l~~~~~dg~i~iwd~~~~~------~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                      .+.+...+++|+. ++++.....+.+|++....      +  .-.+.+......++.++++  .|+++..+|.++.=++.
T Consensus       439 ~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~  516 (1774)
T PF11725_consen  439 KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLP  516 (1774)
T ss_pred             hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCCEEecccc
Confidence            3566777889987 4555555566999987531      1  1223333446777888766  68888889988877765


Q ss_pred             CCc---E-EEE-----Ee-------CCCCeEEEEEeC-CCCeEEEEeeCCCcEEEEEec-------------CCceeecc
Q psy2110         267 TGE---C-EQK-----YR-------FPSPILKVQFHP-RNDHMFLVCPMRHAAVLVDTD-------------GDHQIVPI  316 (622)
Q Consensus       267 ~~~---~-~~~-----~~-------~~~~v~~~~~~~-~~~~~~~~~~~~~~i~~~d~~-------------~~~~~~~~  316 (622)
                      ..+   . +..     ++       ....|... ++- +|..-+++-...|.+...-+.             ..-.+..-
T Consensus       517 ~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF-~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~  595 (1774)
T PF11725_consen  517 AAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGF-ISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNT  595 (1774)
T ss_pred             cccCCCcceEeccccccccccccccccceeecc-ccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeecc
Confidence            321   1 000     00       11122222 111 121111111222222211111             00000000


Q ss_pred             cC-----CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE----------------EEecCCCCEEEEEEcCCCC
Q psy2110         317 DE-----DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA----------------SFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       317 ~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~i~~~~~s~~~~  375 (622)
                      .+     ....-..+.+...|.   +|-.+|.|.-||-.+.....                .+....+.|..+.+++...
T Consensus       596 ~GL~~~~~p~~~~~ldl~r~G~---v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~  672 (1774)
T PF11725_consen  596 RGLPKPPAPAPHEILDLGRAGL---VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHP  672 (1774)
T ss_pred             CCCCCCCCCChHHhhccccccc---eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCC
Confidence            00     000001122223332   34457999999965422110                1112345566666666554


Q ss_pred             EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       376 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      .++-+.. ..+.+=..        ...+..-..+.+.. ...+..++.-.+.+|++.-.  .|.+.... ..+.++..-.
T Consensus       673 ~~~~g~~-~~~a~~~~--------r~~~e~G~~l~Gl~-~~~i~a~Avv~~~~fvald~--qg~lt~h~-k~g~p~~l~~  739 (1774)
T PF11725_consen  673 SIAHGDN-NVFALPQR--------RNKVELGDALEGLE-DRVITAFAVVNDNKFVALDD--QGDLTAHQ-KPGRPVPLSR  739 (1774)
T ss_pred             ccccCCC-cccccccc--------cCCCCCCccccCCC-cCcceeEEEEcCCceEEecc--CCcccccc-CCCCCccCCC
Confidence            4443322 11111111        11222223344433 44556677776666665543  77888888 6666443322


Q ss_pred             -cCCCCceeEEEECCCCCEEEEEeCCcEEE
Q psy2110         456 -GTKGELLLDVVWHPVRPIIASISSGVVSL  484 (622)
Q Consensus       456 -~~~~~~v~~v~~sp~~~~l~s~~dg~v~i  484 (622)
                       +-.+. |.+++......+.|...+|.++-
T Consensus       740 ~gl~G~-ik~l~lD~~~nL~Alt~~G~Lf~  768 (1774)
T PF11725_consen  740 PGLSGE-IKDLALDEKQNLYALTSTGELFR  768 (1774)
T ss_pred             CCCCcc-hhheeeccccceeEecCCCceee
Confidence             23344 99999998888888777887754

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.43  E-value=14  Score=39.36  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             ceeEEEEc--CCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC-----C-EEEEEeC
Q psy2110         143 LAVTCAFN--KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG-----T-LLAVGCN  214 (622)
Q Consensus       143 ~v~~~~~s--~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~-~l~~~~~  214 (622)
                      .+++++++  ...++||+++....|.||-+...........        .......|.+++|-++.     . .+++++-
T Consensus       165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~--------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI  236 (717)
T PF08728_consen  165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP--------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDI  236 (717)
T ss_pred             ceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc--------ccccccCCCeeEeecCCCCCccceEEEEEec
Confidence            34799998  7888999999888898886544211110000        00122457888886643     2 6778888


Q ss_pred             CCeEEEEEc
Q psy2110         215 DGRIVLWDF  223 (622)
Q Consensus       215 dg~i~iwd~  223 (622)
                      .|.+.+|++
T Consensus       237 ~G~v~~~~I  245 (717)
T PF08728_consen  237 SGEVWTFKI  245 (717)
T ss_pred             cCcEEEEEE
Confidence            999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377|consensus

Probab=90.27  E-value=20  Score=35.42  Aligned_cols=138  Identities=8%  Similarity=0.023  Sum_probs=84.7

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      +.+-|...+++|++. ..|.+.-|-.....   ++..-....++|.++.||+|.+.||.-..++.|.+++....+.....
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            345555555555443 34555555543221   22222234579999999999999999999999999998544433322


Q ss_pred             e-----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEeeCCCEEEEEe
Q psy2110         275 R-----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       275 ~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      .     ....|....|+...+ +++...  ..+-+|.... .+.++....+.-.+....|.++.+.++.++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e-~A~i~~--~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTE-IAFITD--QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHhccCcceeEEEEEecCee-EEEEec--CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            2     234588899987644 444332  2344444432 344555666777888888888877655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.06  E-value=2.2  Score=38.53  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee---eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL---QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       370 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      +..++.+|++.+.+|.+++||+.............++-..   ........+..+.++.+|.-|++-+  +|..|.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe--CCCEEEeccc
Confidence            4557889999999999999999964433221111111100   0013445667788888888887766  4567888876


Q ss_pred             CCe
Q psy2110         447 VGN  449 (622)
Q Consensus       447 ~~~  449 (622)
                      -+.
T Consensus        96 L~~   98 (219)
T PF07569_consen   96 LGC   98 (219)
T ss_pred             cce
Confidence            443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.92  E-value=16  Score=33.62  Aligned_cols=233  Identities=12%  Similarity=0.050  Sum_probs=134.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ..++-.|||..-+++...+.|--.|-.+|+....-.+..           +....+...|||..-++-+.. -|.-.|-+
T Consensus        65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G-----------a~Phgiv~gpdg~~Witd~~~-aI~R~dpk  132 (353)
T COG4257          65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG-----------ASPHGIVVGPDGSAWITDTGL-AIGRLDPK  132 (353)
T ss_pred             cccccCCCCceEEecCccccceecCCCCCceEEEecCCC-----------CCCceEEECCCCCeeEecCcc-eeEEecCc
Confidence            477888999888888777777777777775543322211           123466778888766554433 45556655


Q ss_pred             CCceEE-Ee--ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         225 TRGIAK-II--SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       225 ~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      +.+..+ .+  +..........|.+.|++-+++.. |.---.|.. ...+..+.  .....+.++..|+|. +.++.-.+
T Consensus       133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslag  209 (353)
T COG4257         133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGS-VWYASLAG  209 (353)
T ss_pred             ccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCc-EEEEeccc
Confidence            554322 12  223456788899999987777753 211111111 11223333  234567889999998 45555566


Q ss_pred             CcEEEEEecCCce-eecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE-EEEEecCCCCEEEEEEcCCCCE
Q psy2110         300 HAAVLVDTDGDHQ-IVPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL-KASFKASTTAIKSIEFARRGNC  376 (622)
Q Consensus       300 ~~i~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~  376 (622)
                      +.|...|...... +... .........+..+|.|+.-++....+.+..||..+..- ...+.+....-.++.....++.
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV  289 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV  289 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence            6666666654421 1111 11123344556678888888877788888888765442 1233344445556666666665


Q ss_pred             EEEEeCCCcEEEEecc
Q psy2110         377 LLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       377 l~~~~~d~~i~i~d~~  392 (622)
                      .++--..+.|.-+|.+
T Consensus       290 W~sea~agai~rfdpe  305 (353)
T COG4257         290 WLSEADAGAIGRFDPE  305 (353)
T ss_pred             EeeccccCceeecCcc
Confidence            5544445666666655

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.81  E-value=23  Score=35.36  Aligned_cols=15  Identities=20%  Similarity=0.246  Sum_probs=10.8

Q ss_pred             cEEEEECCCCcEEEE
Q psy2110         259 NVCIWDVLTGECEQK  273 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~  273 (622)
                      .+.+||..+.+....
T Consensus       190 ~v~~YD~~t~~W~~~  204 (376)
T PRK14131        190 EVLSYDPSTNQWKNA  204 (376)
T ss_pred             eEEEEECCCCeeeEC
Confidence            588899887766543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.66  E-value=1.4  Score=26.72  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCEEEEEe--C--CcEEEe
Q psy2110         462 LLDVVWHPVRPIIASIS--S--GVVSLW  485 (622)
Q Consensus       462 v~~v~~sp~~~~l~s~~--d--g~v~iw  485 (622)
                      -...+|+|||+.|+.++  +  |...||
T Consensus        11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            67899999999888777  6  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.35  E-value=11  Score=33.50  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=63.7

Q ss_pred             CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC--C---eEEEE---ECC
Q psy2110         375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ--H---ALYIW---EKS  446 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d--~---~i~iw---d~~  446 (622)
                      ..|+.+.....|.+|++..       ........+..   -..+..+.++..|+||++--.+.  .   .+|+|   ...
T Consensus        29 d~Lfva~~g~~Vev~~l~~-------~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~   98 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQ-------EECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ   98 (215)
T ss_pred             ceEEEEcCCCEEEEEEccc-------CCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence            4555556677899999982       12233444432   34567889999999999865421  2   45665   221


Q ss_pred             --CCeeEE-EEecC--------------------CCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         447 --VGNLVK-ILHGT--------------------KGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       447 --~~~~~~-~~~~~--------------------~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                        ..++++ .+.||                    -...+.+++-.|..--|+.+.++.+.||.+.
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~  163 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLK  163 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence              122222 22232                    2234778888887666666778889999884

>PLN02153 epithiospecifier protein

Probab=89.32  E-value=23  Score=34.74  Aligned_cols=68  Identities=10%  Similarity=0.110  Sum_probs=35.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCceEEE--ecc---CCcCeeEEEEcCCCCEEEEEeCC-----------CcEEEE
Q psy2110         205 RGTLLAVGCND-----GRIVLWDFLTRGIAKI--ISA---HMHPVCSISWSRNGYKIISASTD-----------NNVCIW  263 (622)
Q Consensus       205 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~---~~~~v~~~~~s~~~~~l~s~~~d-----------~~i~iw  263 (622)
                      ++++++.|+.+     ..+.+||..+.+-...  +..   ........+..-+++.++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45666676643     3577888876543321  110   11111111222355666666643           247788


Q ss_pred             ECCCCcEEE
Q psy2110         264 DVLTGECEQ  272 (622)
Q Consensus       264 d~~~~~~~~  272 (622)
                      |..+.+...
T Consensus       165 d~~~~~W~~  173 (341)
T PLN02153        165 NIADGKWVQ  173 (341)
T ss_pred             ECCCCeEee
Confidence            988776543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.22  E-value=20  Score=34.00  Aligned_cols=194  Identities=13%  Similarity=0.162  Sum_probs=97.8

Q ss_pred             cEEEEECCCCcEEEEEeCC-------CCeEEEEEeCCC-----CeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEE
Q psy2110         259 NVCIWDVLTGECEQKYRFP-------SPILKVQFHPRN-----DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA  326 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~-----~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  326 (622)
                      +|.+||+.+++.++.+..+       +.+..+.+....     ...+++-.....+.++|+.+++..+....+...    
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~----  110 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP----  110 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT----
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce----
Confidence            6889999999998888744       345667776532     244455555578999999887665544432211    


Q ss_pred             EEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecccccccCCCCCC
Q psy2110         327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR---RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDP  403 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  403 (622)
                        .|+...+..   +|...-|             . ..+.+++.+|   ++++|......+. ++|.+.+..........
T Consensus       111 --~p~~~~~~i---~g~~~~~-------------~-dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~  170 (287)
T PF03022_consen  111 --DPDAGPFTI---GGESFQW-------------P-DGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSD  170 (287)
T ss_dssp             --S-SSEEEEE---TTEEEEE-------------T-TSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--H
T ss_pred             --eccccceec---cCceEec-------------C-CCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccc
Confidence              121111111   1211111             1 2277788866   7788887765432 34444322111111110


Q ss_pred             Cc--ceeeeccccc-eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC----CeeEEEEecCC-CCceeEEEECC--CCCE
Q psy2110         404 EP--IQKLQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----GNLVKILHGTK-GELLLDVVWHP--VRPI  473 (622)
Q Consensus       404 ~~--~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~----~~~~~~~~~~~-~~~v~~v~~sp--~~~~  473 (622)
                      ..  ...++..-.. .....++++++|...++--. .+.|..|+..+    .+.....+... -.-+..+.+.+  ++.+
T Consensus       171 ~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~-~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  171 AQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE-QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             HH-HHHT-EEEEE---SECEEEEETTTEEEEEECC-CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             cccccccceeccccCCCCceEEECCCCcEEEecCC-CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence            11  0111111111 23345789998887777765 88999999875    12222222222 12367888888  6654


Q ss_pred             EEEE
Q psy2110         474 IASI  477 (622)
Q Consensus       474 l~s~  477 (622)
                      .+.+
T Consensus       250 ~v~s  253 (287)
T PF03022_consen  250 WVLS  253 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN02193 nitrile-specifier protein

Probab=88.78  E-value=32  Score=35.60  Aligned_cols=104  Identities=10%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCceEEEecc----CCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcE
Q psy2110         205 RGTLLAVGCND-----GRIVLWDFLTRGIAKIISA----HMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGEC  270 (622)
Q Consensus       205 ~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~  270 (622)
                      ++++.+.|+.+     ..+.+||+.+.+....-..    ....-.+++ .-+++.++.|+.+     ..+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566666654     3578888877654321111    111111222 2245666666654     3477888877665


Q ss_pred             EEEEeC---C-CC-eEEEEEeCCCCeEEEEeeCC----CcEEEEEecCCc
Q psy2110         271 EQKYRF---P-SP-ILKVQFHPRNDHMFLVCPMR----HAAVLVDTDGDH  311 (622)
Q Consensus       271 ~~~~~~---~-~~-v~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~  311 (622)
                      ...-..   . .. -..++.. +++ +++.++.+    ..+.+||+.+..
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~~-~gk-iyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEVV-QGK-VWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEEE-CCc-EEEEECCCCCccCceEEEECCCCE
Confidence            432111   0 00 1112222 343 55555544    457888887653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.76  E-value=16  Score=32.32  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             CEEEEEecCCeEEEEeCC--CccEEEEEecCCCCEEEEEEcCCCCEEEEEeC---CC---cEEEE
Q psy2110         333 QHVVTGNSKGKVLVLSCP--ALELKASFKASTTAIKSIEFARRGNCLLVNTG---DR---LIRVY  389 (622)
Q Consensus       333 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~---~i~i~  389 (622)
                      +.|+.+...+.|.+|++.  ..+++.+|..- +.|..+.++..|++|++--.   ..   .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            455555667789999987  34466666655 78889999999999998633   22   56665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.76  E-value=24  Score=34.26  Aligned_cols=105  Identities=10%  Similarity=0.152  Sum_probs=52.2

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCceE---EEeccCCcCe--eEEEEcCCCCEEEEEeC-----CCcEEEEECCCCc
Q psy2110         205 RGTLLAVGCND-----GRIVLWDFLTRGIA---KIISAHMHPV--CSISWSRNGYKIISAST-----DNNVCIWDVLTGE  269 (622)
Q Consensus       205 ~g~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~v--~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~  269 (622)
                      ++++++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++. -+++..+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45666677653     35667777665531   2221111111  12222 25666666664     2368889988776


Q ss_pred             EEEEEeCC--CCeEEEEEeCCCCeEEEEeeCCC----cEEEEEecCCc
Q psy2110         270 CEQKYRFP--SPILKVQFHPRNDHMFLVCPMRH----AAVLVDTDGDH  311 (622)
Q Consensus       270 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~  311 (622)
                      ....-..+  ......+..- +..+++.|+.++    .+..||..+..
T Consensus       151 W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence            54432222  1122222222 345777776553    34577877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=88.47  E-value=32  Score=35.26  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=46.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      ..|..+.+...|. +.+|+.+| +..||..+++.++.-.... .+|..+..+-.| .|..|+.+| +++.+.+.
T Consensus       165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh
Confidence            4678888888885 45677676 6777877777766544433 567766666566 467776665 67777665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.35  E-value=26  Score=34.07  Aligned_cols=104  Identities=7%  Similarity=0.046  Sum_probs=52.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCcEE---EEEe-CCCCe--EEEEEeCCCCeEEEEeeC-----CCcEEEEEecCC
Q psy2110         247 NGYKIISASTD-----NNVCIWDVLTGECE---QKYR-FPSPI--LKVQFHPRNDHMFLVCPM-----RHAAVLVDTDGD  310 (622)
Q Consensus       247 ~~~~l~s~~~d-----~~i~iwd~~~~~~~---~~~~-~~~~v--~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~  310 (622)
                      ++..++.|+.+     ..+..+|+.+.+..   ..+. .+.+.  .+++..  +..+++.++.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45566666654     35777787776541   1221 22222  122222  3446666654     235777887754


Q ss_pred             c--eeecccCCCCceEEEEEeeCCCEEEEEecCC----eEEEEeCCCcc
Q psy2110         311 H--QIVPIDEDSDLSIVASFDRRGQHVVTGNSKG----KVLVLSCPALE  353 (622)
Q Consensus       311 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~  353 (622)
                      .  .+..+.... .....+...++++.+.|+.++    .+.+||+.+.+
T Consensus       150 ~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       150 EWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            3  222222111 112223345677777777653    35688887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377|consensus

Probab=88.04  E-value=16  Score=36.12  Aligned_cols=101  Identities=11%  Similarity=0.193  Sum_probs=69.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE----EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA----KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-  269 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-  269 (622)
                      +.|.++.||+|.+.||+--.+..|.+++....+..    ...+.....|....|+.. .-+|.....| +.+|-....+ 
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr  144 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR  144 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence            36899999999999999999999999997433322    222334456889999865 5566665444 6666554332 


Q ss_pred             EEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110         270 CEQKYR-FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       270 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      .++..+ +...|.-..|+++..-.+++.+
T Consensus       145 slRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  145 SLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhcccCccEEEEccccceEeeecc
Confidence            223333 6678888999998876666655

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.83  E-value=22  Score=32.62  Aligned_cols=128  Identities=15%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             EEcCCCCEEEEecCCCC--eEEEEEcCC--CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          88 CFSGDGEYVCAGSARQH--ALYIWEKSV--GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~--~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +|-+||++|.+|+..+|  .+++++..+  +.+-..             .....+....+=-+...-|||+.|+.|+...
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~-------------e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~  139 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT-------------ESPNDMQSGRWYPTATTLPDGRVLIVGGSNN  139 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCce-------------ECcccccCCCccccceECCCCCEEEEeCcCC
Confidence            67899999999986543  467776543  011000             0000011111113455567999999888763


Q ss_pred             -cEEEEecCCc-cccccc--ccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         164 -RIVLWDFLTR-GIAKII--SAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       164 -~i~vw~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                       +..+|.-... .....+  ......     ......-..+...|+|++++.+..+  -.|||..+.+.++.+..-
T Consensus       140 ~t~E~~P~~~~~~~~~~~~~l~~~~~-----~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP~l  208 (243)
T PF07250_consen  140 PTYEFWPPKGPGPGPVTLPFLSQTSD-----TLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLPDL  208 (243)
T ss_pred             CcccccCCccCCCCceeeecchhhhc-----cCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCCCC
Confidence             2344443211 101111  000000     0001122356778999999888754  456788888776766543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=87.75  E-value=27  Score=33.55  Aligned_cols=232  Identities=14%  Similarity=0.099  Sum_probs=109.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCC--CceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcE-----------
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLT--RGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGEC-----------  270 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~-----------  270 (622)
                      ++++|+.|+.+|. .+.++..  .+..+.+  +...|+++...+.-+.|++-+ ....++.+++..-..           
T Consensus        12 ~~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            3468999998885 4444554  3333333  356899999998777666654 334599999843221           


Q ss_pred             -----EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-c---eeecc----cCCCCceEEEEEeeC--CCEE
Q psy2110         271 -----EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-H---QIVPI----DEDSDLSIVASFDRR--GQHV  335 (622)
Q Consensus       271 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~---~~~~~----~~~~~~~~~~~~~~~--~~~l  335 (622)
                           ...+.+................++++.....+.++..... .   ....+    ......+..+..+++  ...+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence                 1122222223333444333334555556667776644322 1   11110    011122223333332  4567


Q ss_pred             EEEecCCeEEEEeCCC--ccEEE-----EEecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         336 VTGNSKGKVLVLSCPA--LELKA-----SFKAST-TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      +.|+..+...++++..  .....     ...... .++....+ +++.+ +.+-.+ ...+.|....       ......
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~-Llc~~~-~~v~Vn~~G~-------~~~r~~  238 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEF-LLCYDE-FGVFVNLYGK-------RRSRNP  238 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeE-EEEECc-EEEEEeCCCC-------ccccce
Confidence            7777652244444432  11000     011111 33333333 34443 333333 3333444310       000001


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  456 (622)
                      .+.   -.....++++.  ..||++-.  ++.|.|+++.+++.++.+..
T Consensus       239 ~l~---w~~~p~~~~~~--~pyll~~~--~~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      239 ILH---WEFMPESFAYH--SPYLLAFH--DNGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             EEE---cCCcccEEEEE--CCEEEEEc--CCcEEEEECCCCceEEEEec
Confidence            111   11112344554  46776665  44699999999999888864

Unpublished observations.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.54  E-value=35  Score=34.67  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCc--e----EEEeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLTRG--I----AKIISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYRFP  277 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~~~--~----~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  277 (622)
                      +|++|+.+-..+.|....++...  .    ...+.. .++|+.+...||| ...+.....|.+.=   .++....++..+
T Consensus       368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~~---~~~~~~~~~~~~  443 (454)
T TIGR03606       368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQK---DDGSVTNTLENP  443 (454)
T ss_pred             CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcccc---CCCCceeEecCC
Confidence            36778777778888888876442  1    223433 5799999999997 44444445555432   334455555555


Q ss_pred             CCeEE
Q psy2110         278 SPILK  282 (622)
Q Consensus       278 ~~v~~  282 (622)
                      +.|.-
T Consensus       444 ~~~~~  448 (454)
T TIGR03606       444 GSIIV  448 (454)
T ss_pred             CeEEE
Confidence            54443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.51  E-value=13  Score=37.77  Aligned_cols=30  Identities=10%  Similarity=0.351  Sum_probs=24.7

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      .|.+++..+..+.+++...+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            488899988889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1900|consensus

Probab=87.44  E-value=12  Score=42.26  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=89.3

Q ss_pred             CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110          92 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  171 (622)
Q Consensus        92 ~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~  171 (622)
                      =++.-++.   |+.+.+|+.+++.....+.+-...|.......+.         .=.|-|.=++++.-+.--.|.++-+.
T Consensus        90 I~RaWiTi---Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPk---------pgvFv~~IqhlLvvaT~~ei~ilgV~  157 (1311)
T KOG1900|consen   90 IGRAWITI---DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPK---------PGVFVPEIQHLLVVATPVEIVILGVS  157 (1311)
T ss_pred             hcceEEEe---CCeEEEEEcCCCCccccccchhhhheeeeeecCC---------CCcchhhhheeEEecccceEEEEEEE
Confidence            34444444   3789999999988888888777766422211111         11244444444444444556666443


Q ss_pred             Ccccc---cccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEE--EEcCCC---c-e--------------
Q psy2110         172 TRGIA---KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL--WDFLTR---G-I--------------  228 (622)
Q Consensus       172 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i--wd~~~~---~-~--------------  228 (622)
                      -.+..   ..+..+    .....+ ...|.++....+|+.+++| .||.++-  |....+   + +              
T Consensus       158 ~~~~~~~~~~f~~~----~~i~~d-g~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  158 FDEFTGELSIFNTS----FKISVD-GVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             eccccCcccccccc----eeeecC-CceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            22111   111111    000011 1358888888889877666 5664442  221111   0 0              


Q ss_pred             --EEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q psy2110         229 --AKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       229 --~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                        +-.+. .+..+|..++....-..+++-+..|+|++||+..
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence              11122 5677999999987777888889999999999976

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.36  E-value=39  Score=34.98  Aligned_cols=130  Identities=12%  Similarity=0.131  Sum_probs=62.0

Q ss_pred             EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC---EEEEEEcCCCCEEEEEe--------------CC-----
Q psy2110         326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA---IKSIEFARRGNCLLVNT--------------GD-----  383 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~s~~~~~l~~~~--------------~d-----  383 (622)
                      +...++|.+++...  +.+..+|+. |+.+..+......   -..+..-|+|++|+.+.              .|     
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            44567887776554  678888875 6665555433221   34677788998888776              12     


Q ss_pred             ----CcEEEEecccccccCCCCC--CCcceee---eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         384 ----RLIRVYNHQEVLNAGKDGD--PEPIQKL---QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       384 ----~~i~i~d~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                          ..+..|++...........  .......   .....=..++++.+.+....|+.++.....|...|..+++..-.+
T Consensus       230 d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  230 DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence                2355676664331111000  0000001   111111345788998855555555543668999998899887777


Q ss_pred             ecCC
Q psy2110         455 HGTK  458 (622)
Q Consensus       455 ~~~~  458 (622)
                      ..+.
T Consensus       310 g~~~  313 (477)
T PF05935_consen  310 GPPG  313 (477)
T ss_dssp             S-ST
T ss_pred             CCCC
Confidence            6553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.34  E-value=33  Score=34.14  Aligned_cols=147  Identities=15%  Similarity=0.025  Sum_probs=85.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccC--CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CeEEE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAH--MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS--PILKV  283 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~  283 (622)
                      .++++..+|.|.-.|..++..+.....-  ...+.+-.+..+|+ |+.++.++.++.+|..+|+.........  .+...
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            3445577888888888888766544322  12333333333665 7888888999999998999888887555  11122


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC---CceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEE
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS---DLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASF  358 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~  358 (622)
                      ..-.++  .++..+.++.+...+..++..........   ..+.......+ ..++.+..  ++.+.-+|..+|......
T Consensus       149 ~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         149 PVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcEeeee
Confidence            222222  34444467777777777666554433221   11111111222 34444444  567788888888776654

>KOG4460|consensus

Probab=86.89  E-value=30  Score=34.98  Aligned_cols=94  Identities=9%  Similarity=-0.041  Sum_probs=50.2

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcc---ccccceeEEEEcCCC---CE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL---DCISLAVTCAFNKRG---TL  155 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~v~~~~~s~d~---~~  155 (622)
                      ..+..+..|+.|..++-.+.+ |.+.++=.+.-..-..++.....|.+-.+.....+   ...-.+...+|+|+.   ..
T Consensus       104 feV~~vl~s~~GS~VaL~G~~-Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIK-GLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecCCCceEEEecCC-eeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            345568899999999888865 65544331111111111111111111111100000   011123577899975   56


Q ss_pred             EEEeeCCCcEEEEecCCcccc
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIA  176 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~  176 (622)
                      |..-+.|.+||+|++.....+
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            777788999999999876554

>KOG1900|consensus

Probab=86.79  E-value=9.9  Score=42.76  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=90.2

Q ss_pred             ecCCeEEEEeCCCccEEEEEecCCCCEEEEEE--------cCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee
Q psy2110         339 NSKGKVLVLSCPALELKASFKASTTAIKSIEF--------ARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ  410 (622)
Q Consensus       339 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--------s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  410 (622)
                      +-|+.+.+|+..++.....+.+-...|..+..        -|.=+++++.+.--.|.++-+.-....+.  .......+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--~~~f~~~~~  173 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--LSIFNTSFK  173 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--cccccccee
Confidence            35778999999997777777776666766654        23334555555555666766542211111  111122234


Q ss_pred             ccccceeeeeEEEcCCCCeEEEeeCCCCeEE--EEECCCC---e-e----------------EEEEecCCCCceeEEEEC
Q psy2110         411 DLVNKTMWKKCCFSGDGEYVCAGSARQHALY--IWEKSVG---N-L----------------VKILHGTKGELLLDVVWH  468 (622)
Q Consensus       411 ~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~--iwd~~~~---~-~----------------~~~~~~~~~~~v~~v~~s  468 (622)
                      .......+.++....+|+.+++|-  ||.|+  +|....|   + +                +-.+.+....+|..++..
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~--dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGR--DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeec--CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            444556677888888999887776  44443  2222221   1 1                112223334469999999


Q ss_pred             CCCCEEEEEe-CCcEEEeecCC
Q psy2110         469 PVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       469 p~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      ....++++-+ .|+|++|++.+
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCceEEEEEccC
Confidence            9999999988 89999999974

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=86.51  E-value=31  Score=33.08  Aligned_cols=233  Identities=8%  Similarity=0.007  Sum_probs=110.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-------------
Q psy2110         247 NGYKIISASTDNNVCIWDVLTG-ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-------------  312 (622)
Q Consensus       247 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------------  312 (622)
                      ++++|+.|..+| +.+.++... .....+-...+|..+...+..+.+++.++....++.+++..-..             
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            346899999888 555556542 22333334568999999998887777777777799999843221             


Q ss_pred             --eecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCc----cEEEEE---e-cCCCCEEEEEEcCC--CCEEEE
Q psy2110         313 --IVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPAL----ELKASF---K-ASTTAIKSIEFARR--GNCLLV  379 (622)
Q Consensus       313 --~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~----~~~~~~---~-~~~~~i~~~~~s~~--~~~l~~  379 (622)
                        ......+............. ..++++....+|.++.....    .....+   . ....++..+..+++  ...+.+
T Consensus        91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv  170 (302)
T smart00036       91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI  170 (302)
T ss_pred             ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence              01111222222222333221 22334444556777643321    112111   1 11223333333333  456777


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC-eeEEEEecCC
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLVKILHGTK  458 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~-~~~~~~~~~~  458 (622)
                      |+..+...++++....... . + ..+.......... ..++..-+++.+|++-.  + ...+.|.. | ...+...-.-
T Consensus       171 G~~~~~~~~~~~~~~~~~~-~-d-~sl~~~~~~~~~~-p~~i~~l~~~e~Llc~~--~-~~v~Vn~~-G~~~~r~~~l~w  242 (302)
T smart00036      171 GSDKGGGDVVQFHESLVSK-E-D-LSLPFLSEETSLK-PISVVQVPRDEFLLCYD--E-FGVFVNLY-GKRRSRNPILHW  242 (302)
T ss_pred             EEcCCCCeEEEEeeccccc-c-c-ccccccccccccC-ceEEEEECCCeEEEEEC--c-EEEEEeCC-CCccccceEEEc
Confidence            7664334455554210000 0 0 0000000000001 12233344566665544  2 34455544 3 2211111111


Q ss_pred             CCceeEEEECCCCCEEEEEeCCcEEEeecCCc
Q psy2110         459 GELLLDVVWHPVRPIIASISSGVVSLWAQNQV  490 (622)
Q Consensus       459 ~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~  490 (622)
                      +..+.++++.  .++|....+..|.++++.+.
T Consensus       243 ~~~p~~~~~~--~pyll~~~~~~ievr~l~~~  272 (302)
T smart00036      243 EFMPESFAYH--SPYLLAFHDNGIEIRSIKTG  272 (302)
T ss_pred             CCcccEEEEE--CCEEEEEcCCcEEEEECCCC
Confidence            1225677776  37777777677999999754

Unpublished observations.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.40  E-value=50  Score=35.33  Aligned_cols=132  Identities=11%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             EEEeeCCCEEEEEecC----CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecccccc
Q psy2110         326 ASFDRRGQHVVTGNSK----GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR-----LIRVYNHQEVLN  396 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~i~d~~~~~~  396 (622)
                      ++|..|.++.+++...    ..+++|. +.|++-..-....+.-..+.|-|+|..+++-..||     .|.++..+... 
T Consensus       207 i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr-  284 (1243)
T COG5290         207 IFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR-  284 (1243)
T ss_pred             EEEccCcceeeecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc-
Confidence            4555566666665432    2355554 22332222222233344689999999999876443     36666544211 


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE--EEEecCCCCceeEEEECCCCC
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV--KILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~v~~sp~~~  472 (622)
                           +...-...   .........+|.-....++.+.  .+.+.+|-..+-.-.  ..+..+  . +.-+.|+|...
T Consensus       285 -----HGef~lr~---~~dEk~~~~~wn~~s~vlav~~--~n~~~lwttkNyhWYLK~e~~ip--~-~s~vkwhpe~~  349 (1243)
T COG5290         285 -----HGEFDLRV---GCDEKAFLENWNLLSTVLAVAE--GNLLKLWTTKNYHWYLKVERQIP--G-ISYVKWHPEEK  349 (1243)
T ss_pred             -----cCCccccC---CchhhhhhhhhhHHHHHHHHhh--cceEEEEEccceEEEEEEeecCC--C-cceeeeccccC
Confidence                 11110000   0111122346665555555544  457999976543221  112212  1 66788988765

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=86.40  E-value=37  Score=33.84  Aligned_cols=53  Identities=13%  Similarity=0.195  Sum_probs=26.4

Q ss_pred             CCCEEEEEeCC-----------CcEEEEECCCCcEEEEEe-CCCCeE-EEEEeCCCCeEEEEeeCC
Q psy2110         247 NGYKIISASTD-----------NNVCIWDVLTGECEQKYR-FPSPIL-KVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       247 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~~~~~~~~  299 (622)
                      ++...+.|+..           ..+..||..+.+....-. .+.... ..+....+..+++.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            56666666643           247788888766544322 112111 112221244577777653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.39  E-value=16  Score=29.58  Aligned_cols=111  Identities=9%  Similarity=0.036  Sum_probs=67.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC--------CcEEEEEeCCCCeEEEEEeC---C-CCeEEEEeeCCCcEEEEEecC
Q psy2110         242 ISWSRNGYKIISASTDNNVCIWDVLT--------GECEQKYRFPSPILKVQFHP---R-NDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       242 ~~~s~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~v~~~~~~~---~-~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      -.|......|++++.-|+|.|++...        ...++.+.....|++++-.+   + +..+++.| ....+..||...
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence            34555556788888889999998763        33567777888888886654   2 33444444 466788999987


Q ss_pred             CceeecccCCCCceEEEEEee----CCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         310 DHQIVPIDEDSDLSIVASFDR----RGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      ...+...... +.+.++.+..    ....+++ +.+..|.-||....+..
T Consensus        83 N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   83 NSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             CchhhhhhCc-cceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEE
Confidence            7655544443 4455555432    2234444 34456666775544433

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.26  E-value=32  Score=32.91  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-----eEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-----CSISWSRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~s~~~d~~i~iwd~  265 (622)
                      .+.++...++|.+|++.-.-..|.+.+-.+++.+..+.+....-     ...+|-.|-+++-.+..++.|.++|=
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            47788888999999999888899999999999999987652211     12444445555545566788999885

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.46  E-value=9.3  Score=28.56  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=0.0

Q ss_pred             eeEEEcCC-CCeEEEeeC----------------CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCc
Q psy2110         419 KKCCFSGD-GEYVCAGSA----------------RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGV  481 (622)
Q Consensus       419 ~~~~~spd-g~~l~~~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~  481 (622)
                      ..+++.++ |...++-++                ..|.+.-||..+++..-.+.+-.-  .+.|+.++|+.+|+.+.-+.
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~f--pNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYF--PNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESS--EEEEEE-TTSSEEEEEEGGG
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCc--cCeEEEcCCCCEEEEEeccC


Q ss_pred             EEEeec
Q psy2110         482 VSLWAQ  487 (622)
Q Consensus       482 v~iw~~  487 (622)
                      .+|+..
T Consensus        79 ~Ri~ry   84 (89)
T PF03088_consen   79 YRILRY   84 (89)
T ss_dssp             TEEEEE
T ss_pred             ceEEEE

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	622
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-10
2h9l_A	329	Wdr5delta23 Length = 329		3e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-07
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		9e-04

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 63/348 (18%)
Query: 132 VEFDGALDCISLAVTCAFNKRGTLLAVGCNDG----RIVLWDFLTRGIAKIISAHMHPEF 187
           VE   +LD  S+     F+  G  LA GCN      R+     + R ++   +A+  PE 
Sbjct: 55  VELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-LSDDSAANKDPEN 113
Query: 188 DGALDCISLAV---TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW 244
                  S  +   +  F+  G  LA G  D  I +WD   R I  I+  H   + S+ +
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 245 SRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVL 304
             +G K++S S D  V IWD+ TG+C         +  V   P +        +  A  +
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 305 VDTDGDHQIVPID---------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK 355
            D++    +  +D         +DS  S+V  F R GQ VV+G                 
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVV--FTRDGQSVVSG----------------- 274
Query: 356 ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ-KLQDLVN 414
                                    + DR ++++N Q   N      P     ++  + +
Sbjct: 275 -------------------------SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 415 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELL 462
           K        + + EY+ +GS  +  L+ W+K  GN + +L G +  ++
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLF-WDKKSGNPLLMLQGHRNSVI 356

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ A SA +  + IW    G   K + G K                  L ++  
Sbjct: 34  FSPNGEWLAASSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 55  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 95
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 144
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 232

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 53  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 93
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 142
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 230

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 37  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 39/309 (12%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 34  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLS 323
           G+C +        P+  V+F P N    L   + +   L D       +     ++    
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 324 IVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT- 381
           I A+F    G+ +V+G+    V + +    E+    +  T  + S       N +     
Sbjct: 243 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAAL 302
Query: 382 -GDRLIRVY 389
             D+ I++Y
Sbjct: 303 ENDKTIKLY 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 37  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 31  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 71
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 120
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 208

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 36  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 76
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 125
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 213

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 32  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 72
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 121
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 209

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 30  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 70
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 119
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 207

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 31  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 71
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 120
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 208

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 27  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 67
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 116
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 204

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 48  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 88
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 137
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 225

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 37  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 77
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 126
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 214

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 34  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 34  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 33/208 (15%)
Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT-C 147
           FS +GE++ + SA +  + IW    G   K + G K                  L ++  
Sbjct: 34  FSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHK------------------LGISDV 74
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A++    LL    +D  + +WD  +    K +  H +  F            C FN +  
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-----------CCNFNPQSN 123
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
           L+  G  D  + +WD  T    K + AH  PV ++ ++R+G  I+S+S D    IWD  +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 268 GECEQKY--RFPSPILKVQFHPRNDHMF 293
           G+C +        P+  V+F P   ++ 
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYIL 211

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           +F+  G LLA    D  I LWDF  +G   I + H H   D  +  +S+         G 
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDF--QGFECIRTMHGH---DHNVSSVSIM------PNGD 205
Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
            +     D  I +W+  T    K  + H   V  +  +++G  I S S D  V +W V T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 268 GECEQKYR 275
            EC+ + R
Sbjct: 266 KECKAELR 273

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 56/328 (17%)
Query: 88  CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
           CFS DG+ + +  A +             +++     GE LLD+   +  + C      C
Sbjct: 629 CFSQDGQRIASCGADK------------TLQVFKAETGEKLLDIKAHEDEVLC------C 670
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           AF+   + +A    D ++ +WD  T    K++  H + E    ++C      C F  +  
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSAT---GKLV--HTYDEHSEQVNC------CHFTNKSN 719
Query: 208 --LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
             LLA G ND  + LWD   +     +  H + V    +S +   + S S D  + +WDV
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-----DS 320
            +    +        L  +  P +  + + C    A      DGD  IV         D 
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------DGDKIIVAAKNKVLLFDI 833
Query: 321 DLSIVASFDRRGQHVV------TGNSKGKVLVLSCPALEL--------KASFKASTTAIK 366
             S + +    G H        +      V+ LS   +EL         A  +   + + 
Sbjct: 834 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 367 SIEFARRGNCLLVNTGDRLIRVYNHQEV 394
            + F+  G+  L  + D+ IRV+  ++V
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKKV 921

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 56/328 (17%)
Query: 88  CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
           CFS DG+ + +  A +             +++     GE LLD+   +  + C      C
Sbjct: 622 CFSQDGQRIASCGADK------------TLQVFKAETGEKLLDIKAHEDEVLC------C 663
Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           AF+   + +A    D ++ +WD  T    K++  H + E    ++C      C F  +  
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSAT---GKLV--HTYDEHSEQVNC------CHFTNKSN 712
Query: 208 --LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV 265
             LLA G ND  + LWD   +     +  H + V    +S +   + S S D  + +WDV
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-----DS 320
            +    +        L  +  P +  + + C    A      DGD  IV         D 
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------DGDKIIVAAKNKVLLFDI 826
Query: 321 DLSIVASFDRRGQHVV------TGNSKGKVLVLSCPALEL--------KASFKASTTAIK 366
             S + +    G H        +      V+ LS   +EL         A  +   + + 
Sbjct: 827 HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 367 SIEFARRGNCLLVNTGDRLIRVYNHQEV 394
            + F+  G+  L  + D+ IRV+  ++V
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKKV 914

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)
Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
           +NK G LL     D    +W  L       +  H   + SI         ++ S D ++ 
Sbjct: 40  YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC------------------PMRHAAV 303
           +WDV  G+C   ++ P P+ +V+F P  ++   +                      H   
Sbjct: 100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159
Query: 304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV 344
            V  +  H+I+   E  D + VA +  +G++++ G+  GK+
Sbjct: 160 KVSEEPIHKII-THEGLDAATVAGWSTKGKYIIAGHKDGKI 199

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 178 IISAHMHP-EFDGALDCISLAVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH 235
           II+   HP     +    +  VTC A++  G  +  G  +G + LW+  T  +  +++ H
Sbjct: 90  IIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH 148
Query: 236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF 276
             P+ S+ W+++G  IIS   +N   +W+V++G   Q +  
Sbjct: 149 RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 107/529 (20%), Positives = 204/529 (38%), Gaps = 113/529 (21%)
Query: 1   SDLSIVASFDRRGQ--HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQ 58
           SD   V  ++R GQ    +TG+S     V   P        G  +   + D+ ++++N  
Sbjct: 117 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP-------DGQTIASASDDKTVKLWN-- 167
Query: 59  EVLNAGKDGDPEPIQKLQDLV--NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL 116
                 ++G     Q LQ L   + ++W    FS DG+ + + S  +  + +W +     
Sbjct: 168 ------RNG-----QLLQTLTGHSSSVWG-VAFSPDGQTIASASDDK-TVKLWNR----- 209
Query: 117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA 176
                   G+LL  +     ++  +      AF+  G  +A   +D  + LW+   + + 
Sbjct: 210 -------NGQLLQTLTGHSSSVRGV------AFSPDGQTIASASDDKTVKLWNRNGQ-LL 255
Query: 177 KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 236
           + ++ H            S     AF   G  +A   +D  + LW+   + + + ++ H 
Sbjct: 256 QTLTGHS-----------SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS 303
Query: 237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-------RN 289
             V  +++S +G  I SAS D  V +W+      +      S +  V F P        +
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 290 DHMFLVCPMRHAAVLVDTDGDHQIV----------PIDEDSDLSIVASFDRRGQ--HVVT 337
           D   +    R+  +L    G    V           I   SD   V  ++R GQ    +T
Sbjct: 364 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 338 GNSKG-------------------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLL 378
           G+S                     K + L     +L  +    +++++ + F+  G  + 
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 483
Query: 379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQ 437
             + D+ ++++N        ++G     Q LQ L  + +  +   FS DG+ + + S  +
Sbjct: 484 SASDDKTVKLWN--------RNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530
Query: 438 HALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
             + +W ++ G L++ L G     +  V + P    IAS SS   V LW
Sbjct: 531 -TVKLWNRN-GQLLQTLTGHSSS-VWGVAFSPDGQTIASASSDKTVKLW 576

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 132/312 (42%), Gaps = 25/312 (8%)
Query: 181 AHMHPEFDGALDCISLAVT-CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239
           +HM  +    L+  S +V   AF+  G  +A   +D  + LW+   + + + ++ H   V
Sbjct: 2   SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSV 60
Query: 240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR 299
             +++S +G  I SAS D  V +W+      +      S +  V F P  D   +     
Sbjct: 61  WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASD 118
Query: 300 HAAV-LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF 358
              V L + +G          S +  VA F   GQ + +  S  K + L     +L  + 
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSSSVWGVA-FSPDGQTIASA-SDDKTVKLWNRNGQLLQTL 176
Query: 359 KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTM 417
              ++++  + F+  G  +   + D+ ++++N        ++G     Q LQ L  + + 
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--------RNG-----QLLQTLTGHSSS 223
Query: 418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI 477
            +   FS DG+ + + S  +  + +W ++ G L++ L G     +  V + P    IAS 
Sbjct: 224 VRGVAFSPDGQTIASASDDK-TVKLWNRN-GQLLQTLTGHSSS-VNGVAFRPDGQTIASA 280
Query: 478 S-SGVVSLWAQN 488
           S    V LW +N
Sbjct: 281 SDDKTVKLWNRN 292

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 25/260 (9%)
Query: 138 LDCIS---LAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAKIISAHMHPEFDGAL 191
           LDC++      +C     G  L VG     + +WD      R  A++ S+        A 
Sbjct: 91  LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--------AP 142
Query: 192 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI 251
            C +LA++        +    C+DG I +WD   + + +    H      I  S +G K+
Sbjct: 143 ACYALAIS----PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311
            +   DN V  WD+  G   Q++ F S I  + + P  + + +     +  VL     D 
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS--TTAIKSIE 369
             + + E   LS+   F   G+  V   S GK  +L+       AS   S  ++++ S +
Sbjct: 259 YQLHLHESCVLSL--KFAYCGKWFV---STGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313
Query: 370 FARRGNCLLVNTGDRLIRVY 389
            +     ++  +GD+   VY
Sbjct: 314 ISVDDKYIVTGSGDKKATVY 333

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 105 ALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163
           ++Y+W  S G+++++L   + GE +  V                A+ K G  LAVG +  
Sbjct: 137 SVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVGTSSA 180
Query: 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223
            + LWD   +   + +++H              A   + +    +L+ G   G I   D 
Sbjct: 181 EVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIHHHDV 227
Query: 224 -LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
            +       +S H   VC + W+ +G  + S   DN V +W    GE
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 274

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 105 ALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 163
           ++Y+W  S G+++++L   + GE +  V                A+ K G  LAVG +  
Sbjct: 126 SVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVGTSSA 169
Query: 164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF 223
            + LWD   +   + +++H              A   + +    +L+ G   G I   D 
Sbjct: 170 EVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIHHHDV 216
Query: 224 -LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE 269
            +       +S H   VC + W+ +G  + S   DN V +W    GE
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 114/305 (37%), Gaps = 51/305 (16%)
Query: 101 ARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG 159
           A  +++Y+W  S G+++++L   + GE +  V                A+ K G  LAVG
Sbjct: 42  ALDNSVYLWSASSGDILQLLQMEQPGEYISSV----------------AWIKEGNYLAVG 85
Query: 160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV 219
            +   + LWD   +   + +++H              A   + +    +L+ G   G I 
Sbjct: 86  TSSAEVQLWDVQQQKRLRNMTSHS-------------ARVGSLSWNSYILSSGSRSGHIH 132
Query: 220 LWDF-LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS 278
             D  +       +S H   VC + W+ +G  + S   DN V +W    GE         
Sbjct: 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----- 187
Query: 279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQI-----------VPIDEDSDL-SI 324
           P+     H         CP + + VL    G  D  I             +D  S + SI
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 246
Query: 325 VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
           + S   +      G ++ ++++   P +   A  K  T+ + S+  +  G  +     D 
Sbjct: 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 385 LIRVY 389
            +R++
Sbjct: 307 TLRLW 311

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 16/153 (10%)
Query: 145 VTCAFNKRGTLLAVGCNDGRIVLW----DFLTRGIAKIISAHMHPEFDGALDCISLAVTC 200
           + CA+   G  +A G  D +  ++    D      AK  S  MH  +  A         C
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA---------C 160
Query: 201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC--SISWSRNGYKIISASTDN 258
           +F      +     DG   LWD  +  + +    H   V    ++ S  G   +S   D 
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 259 NVCIWDVLTGECEQKYR-FPSPILKVQFHPRND 290
              +WD+ +G+C Q +    S +  V+++P  D
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 202 FNKRGTLLAVGCNDGRIVLW---DFLTRGIAKIIS----AHMHPVCSISWSRNGYKIISA 254
           +N  G+L A    DG IVL+   D    G+ +  S    AH   V  ++WS +G KI SA
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257
Query: 255 STDNNVCIWDVLTGECEQ 272
           S D  + IW+V T + E+
Sbjct: 258 SADKTIKIWNVATLKVEK 275

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
           S  +TCA+   G  +A G  D    +++  TR     +++ ++ H      G L C    
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
             C F     ++     D    LWD  T       + H   V S+S + +    +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
            +  +WDV  G C Q +    S I  + F P N + F          L D   D +++  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
             D+ +  +   SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
           S  +TCA+   G  +A G  D    +++  TR     +++ ++ H      G L C    
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 148
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
             C F     ++     D    LWD  T       + H   V S+S + +    +S + D
Sbjct: 149 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
            +  +WDV  G C Q +    S I  + F P N + F          L D   D +++  
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
             D+ +  +   SF + G+ ++ G
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAG 288

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 20/204 (9%)
Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLA 197
           S  +TCA+   G  +A G  D    +++  TR     +++ ++ H      G L C    
Sbjct: 109 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSC---- 159
Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
             C F     ++     D    LWD  T       + H   V S+S + +    +S + D
Sbjct: 160 --CRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 258 NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI 316
            +  +WDV  G C Q +    S I  + F P N + F          L D   D +++  
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 317 DEDSDLSIVA--SFDRRGQHVVTG 338
             D+ +  +   SF + G+ ++ G
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAG 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	622
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.74
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.65
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.58
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.45
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.45
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.44
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.42
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.32
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.31
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.3
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.23
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.16
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.04
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.04
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.9
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.89
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.88
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.84
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.8
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.79
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.73
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.66
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.54
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.49
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.41
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.38
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.31
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.2
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.15
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.11
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.05
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.04
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.92
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.91
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.91
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.86
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.81
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.74
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.71
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.67
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.55
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.55
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.48
3ott_A	758	Two-component system sensor histidine kinase; beta	97.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.42
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.38
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.3
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.29
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.24
3ott_A	758	Two-component system sensor histidine kinase; beta	97.23
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.2
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.98
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.82
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.71
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.35
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.46
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.43
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.34
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.04
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.16
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	91.44
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.59
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.49
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	90.47
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	90.27
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.86
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	89.77
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	88.63
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.08
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	86.03
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.62
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	84.83
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.34
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	81.97

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.5e-59  Score=495.85  Aligned_cols=437  Identities=16%  Similarity=0.232  Sum_probs=350.8

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccce--e---------------cccCceEEeecCC----ceEEEeechh
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--K---------------ASRGNCLLVNTGD----RLIRVYNHQE   59 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~--~---------------~~~~~~l~~~~~d----~~i~~w~~~~   59 (622)
                      ++.|++++|||||++||+|+.||+|+|||+...+.  .               .+++++|++++.+    +.|++|+...
T Consensus        59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~  138 (611)
T 1nr0_A           59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT  138 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC
Confidence            36799999999999999999999999999854211  0               4467888887764    5899998532


Q ss_pred             hhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCC-EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCc
Q psy2110          60 VLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGA  137 (622)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  137 (622)
                                 ..   ..+. +...+.+++|+|++. .|++++.| ++|++||..++++...+.+|...|          
T Consensus       139 -----------~~---~~l~gh~~~v~~v~f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V----------  193 (611)
T 1nr0_A          139 -----------SN---GNLTGQARAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFV----------  193 (611)
T ss_dssp             -----------BC---BCCCCCSSCEEEEEECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCE----------
T ss_pred             -----------Cc---ceecCCCCCceEEEECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCce----------
Confidence                       11   1122 345678999999997 48888865 999999999999999999999988          


Q ss_pred             cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         138 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       138 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                             ++++|+|++++||+|+.|++|++||+.+++....+......    ...+...|.+++|+|+|++|++++.|++
T Consensus       194 -------~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~----~~~h~~~V~~v~~spdg~~l~s~s~D~~  262 (611)
T 1nr0_A          194 -------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK----NVAHSGSVFGLTWSPDGTKIASASADKT  262 (611)
T ss_dssp             -------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS----SCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             -------EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccc----ccccCCCEEEEEECCCCCEEEEEeCCCe
Confidence                   59999999999999999999999999988777665321000    0011146899999999999999999999


Q ss_pred             EEEEEcCCCceEE-------------------------------------------EeccCCcCeeEEEEcCCCCEEEEE
Q psy2110         218 IVLWDFLTRGIAK-------------------------------------------IISAHMHPVCSISWSRNGYKIISA  254 (622)
Q Consensus       218 i~iwd~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~s~~~~~l~s~  254 (622)
                      |++||+.+++++.                                           .+.+|...|++++|+|+|++|+++
T Consensus       263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~  342 (611)
T 1nr0_A          263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA  342 (611)
T ss_dssp             EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            9999998766543                                           345789999999999999999999


Q ss_pred             eCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-------------------
Q psy2110         255 STDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-------------------  313 (622)
Q Consensus       255 ~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------------  313 (622)
                      +.|++|++||+.++++...+.  |...+.+++|++++  .+++++.++.+++|+.......                   
T Consensus       343 s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s  420 (611)
T 1nr0_A          343 DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS  420 (611)
T ss_dssp             ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred             eCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence            999999999999998877653  77889999999876  4778889999999987543210                   


Q ss_pred             ----------------------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--EEEEecCCCCEEEEE
Q psy2110         314 ----------------------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--KASFKASTTAIKSIE  369 (622)
Q Consensus       314 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~  369 (622)
                                            ..+ .+...+.+++|+|+|++|++|+.|+.|++||+.++..  +.. ..|...|++++
T Consensus       421 ~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~  498 (611)
T 1nr0_A          421 ADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA  498 (611)
T ss_dssp             TTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE
T ss_pred             CCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE
Confidence                                  000 1345578899999999999999999999999987653  233 68999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       370 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                      |+|+|++|++++.|+.|++|++...        ...........+...+.+++|+|||++||+++. |++|++|++.++.
T Consensus       499 fspdg~~las~s~d~~v~~w~~~~~--------~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-D~~v~lW~~~~~~  569 (611)
T 1nr0_A          499 FSNNGAFLVATDQSRKVIPYSVANN--------FELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPS  569 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGT--------TEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTT
T ss_pred             ECCCCCEEEEEcCCCCEEEEEcCCC--------CceeeeeeeeecccceeEEEECCCCCEEEEEEC-CCcEEEEECCCcc
Confidence            9999999999999999999999731        111111001113456789999999999999997 9999999998765


Q ss_pred             -eE-EEEecC-CCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         450 -LV-KILHGT-KGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       450 -~~-~~~~~~-~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                       .+ ..+.+| .+. |++++|+|+++ |++++ |++|++|++.
T Consensus       570 ~~~~~~~~~h~~~~-v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          570 DHPIIIKGAHAMSS-VNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SCCEEETTSSTTSC-EEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             cccchhhccCcccC-eeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence             33 567788 555 99999999998 99998 9999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.6e-58  Score=486.28  Aligned_cols=455  Identities=20%  Similarity=0.363  Sum_probs=364.8

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD   66 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~   66 (622)
                      ++.|+|++|||||++||+|+.||+|+|||.....+.              .+++++|++++.|++|++||..........
T Consensus        16 ~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~   95 (577)
T 2ymu_A           16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT   95 (577)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEE
Confidence            478999999999999999999999999997543221              457899999999999999997532211111


Q ss_pred             CCCccchhh----------------------------------------------------------------------h
Q psy2110          67 GDPEPIQKL----------------------------------------------------------------------Q   76 (622)
Q Consensus        67 ~~~~~~~~~----------------------------------------------------------------------~   76 (622)
                      ++...+..+                                                                      .
T Consensus        96 ~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (577)
T 2ymu_A           96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT  175 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeee
Confidence            111110000                                                                      0


Q ss_pred             hhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          77 DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        77 ~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      ...+...+.+++|+|++++|++++.+ +.|++||. +++.+..+.+|...+                 .+++|+|++++|
T Consensus       176 ~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~w~~-~~~~~~~~~~~~~~v-----------------~~~~~s~dg~~l  236 (577)
T 2ymu_A          176 LTGHSSSVWGVAFSPDGQTIASASDD-KTVKLWNR-NGQLLQTLTGHSSSV-----------------RGVAFSPDGQTI  236 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETT-SEEEEECT-TSCEEEEEECCSSCE-----------------EEEEECTTSSCE
T ss_pred             ccCCCcceeeeeecCCCCEEEEEcCC-CEEEEEeC-CCcEEEEEecCCCCE-----------------EEEEECCCCCEE
Confidence            00112233455666666666666643 66666664 355666666666665                 699999999999


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      ++++.|+.|++|+.. ++.+..+..+.           ..|.+++|+|+++.|++++.++.|++|+. +++....+.+|.
T Consensus       237 ~~~~~d~~i~~w~~~-~~~~~~~~~~~-----------~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~  303 (577)
T 2ymu_A          237 ASASDDKTVKLWNRN-GQLLQTLTGHS-----------SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS  303 (577)
T ss_dssp             EEEETTSCEEEECTT-SCEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEEecCC-----------CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC
Confidence            999999999999964 45555555554           35899999999999999999999999996 567788899999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      ..|.+++|+|++++|++++.|+.|++||+..........+...+.+++|+|++. .+++++.++.+++|+. +...+..+
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~  381 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTL  381 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEET-TCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcC-CCCEEEEe
Confidence            999999999999999999999999999987665544445888999999999987 5778889999999995 45667778


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN  396 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~  396 (622)
                      ..|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||...   
T Consensus       382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---  457 (577)
T 2ymu_A          382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---  457 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---
T ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---
Confidence            889999999999999999999999999999995 5788899999999999999999999999999999999999752   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEE
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIAS  476 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  476 (622)
                             ..+..+..+  ...+.+++|+|+|++|++++. |+.|++||. +++++..+.+|... |++++|+|++++|++
T Consensus       458 -------~~~~~~~~~--~~~v~~~~~spd~~~las~~~-d~~i~iw~~-~~~~~~~~~~h~~~-v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          458 -------QLLQTLTGH--SSSVRGVAFSPDGQTIASASD-DKTVKLWNR-NGQLLQTLTGHSSS-VRGVAFSPDGQTIAS  525 (577)
T ss_dssp             -------CEEEEEECC--SSCEEEEEECTTSCEEEEEET-TSEEEEEET-TSCEEEEEECCSSC-EEEEEECTTSSCEEE
T ss_pred             -------CEEEEEcCC--CCCEEEEEEcCCCCEEEEEeC-CCEEEEEcC-CCCEEEEEeCCCCC-EEEEEEcCCCCEEEE
Confidence                   344444443  345688999999999999997 999999995 68889999999887 999999999999999


Q ss_pred             Ee-CCcEEEeecCCcc----------cc-cccCCCCceecc
Q psy2110         477 IS-SGVVSLWAQNQVE----------NW-SAFAPDFKELDE  505 (622)
Q Consensus       477 ~~-dg~v~iw~~~~~~----------~~-~~~s~~~~~l~~  505 (622)
                      ++ ||.|++|+..+..          .+ .+|+||++.|+.
T Consensus       526 ~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          526 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             EETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred             EECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            99 9999999976321          11 278888887764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.1e-57  Score=483.74  Aligned_cols=433  Identities=16%  Similarity=0.241  Sum_probs=354.4

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD   66 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~   66 (622)
                      ..+.+++|||||++||+++ ++.|+||++...+..               .++|++|++++.|++|++||+....     
T Consensus        19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~-----   92 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-----   92 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-----
T ss_pred             CceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc-----
Confidence            3578899999999999987 579999998754222               5689999999999999999985211     


Q ss_pred             CCCccchhhhhhccccceeEEEEcCCCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          67 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                          .........+...+.+++|+|+|++|++++.++   +.|++||  +++....+.+|...|                
T Consensus        93 ----~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v----------------  150 (611)
T 1nr0_A           93 ----HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM----------------  150 (611)
T ss_dssp             ----CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE----------------
T ss_pred             ----ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCc----------------
Confidence                000111112345688999999999999987542   3566665  677778889999988                


Q ss_pred             eeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         144 AVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       144 v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                       ++++|+|++. +|++|+.|++|++||..+++....+..|.           ..|.+++|+|+|++|++++.|+.|++||
T Consensus       151 -~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~-----------~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          151 -NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT-----------KFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             -EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc-----------CceEEEEECCCCCEEEEEECCCcEEEEE
Confidence             5999999987 69999999999999998888777777665           3589999999999999999999999999


Q ss_pred             cCCCceEEEec-------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC----CCeEEEEEeCCCCe
Q psy2110         223 FLTRGIAKIIS-------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP----SPILKVQFHPRNDH  291 (622)
Q Consensus       223 ~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~  291 (622)
                      +.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+.++++...+...    .....+.|  ++ .
T Consensus       219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~  295 (611)
T 1nr0_A          219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TK-Q  295 (611)
T ss_dssp             TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CS-S
T ss_pred             CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cC-C
Confidence            99999888884       79999999999999999999999999999999999998888633    34556666  33 3


Q ss_pred             EEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-e-----------
Q psy2110         292 MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-K-----------  359 (622)
Q Consensus       292 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-----------  359 (622)
                      .+++++.++.+++|+.........+.+|...+.+++|+|+|++|++++.|+.|++||+.+++....+ .           
T Consensus       296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~  375 (611)
T 1nr0_A          296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT  375 (611)
T ss_dssp             CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEE
Confidence            6888999999999999988888888899999999999999999999999999999998876543321 0           


Q ss_pred             ----------------------------------------------------------------------cCCCCEEEEE
Q psy2110         360 ----------------------------------------------------------------------ASTTAIKSIE  369 (622)
Q Consensus       360 ----------------------------------------------------------------------~~~~~i~~~~  369 (622)
                                                                                            .|...+.+++
T Consensus       376 s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va  455 (611)
T 1nr0_A          376 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVA  455 (611)
T ss_dssp             CTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEE
T ss_pred             CCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEE
Confidence                                                                                  1234567899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC-C
Q psy2110         370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV-G  448 (622)
Q Consensus       370 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~-~  448 (622)
                      |+|+|++|++++.|+.|++||+..         . .........+...+.+++|||||++|++++. |+.|++|++.+ +
T Consensus       456 ~spdg~~lasgs~D~~v~lwd~~~---------~-~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~~v~~w~~~~~~  524 (611)
T 1nr0_A          456 LSNDKQFVAVGGQDSKVHVYKLSG---------A-SVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNF  524 (611)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEET---------T-EEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTT
T ss_pred             EeCCCCEEEEeCCCCeEEEEEccC---------C-ceeeeeccCCCCceEEEEECCCCCEEEEEcC-CCCEEEEEcCCCC
Confidence            999999999999999999999873         1 1111111223456789999999999999997 99999999987 6


Q ss_pred             eeEEE--EecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         449 NLVKI--LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       449 ~~~~~--~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      +++..  +.+|... |++++|+|++++|++++ |++|++|++..
T Consensus       525 ~~~~~~~~~~H~~~-V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          525 ELAHTNSWTFHTAK-VACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             EESCCCCCCCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ceeeeeeeeecccc-eeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            65544  3347766 99999999999999999 99999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.4e-56  Score=470.53  Aligned_cols=435  Identities=21%  Similarity=0.382  Sum_probs=357.1

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcC--
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAG--   64 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~--   64 (622)
                      +..|++++|||||++||+|+.|++|+|||.....+.              .+++++|++++.|+.+++|+........  
T Consensus        57 ~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~  136 (577)
T 2ymu_A           57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  136 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeecc
Confidence            357899999999999999999999999997543211              3355666666666666666532110000  


Q ss_pred             -----------------------------------------------------CCCC-------C-------ccchhhhh
Q psy2110          65 -----------------------------------------------------KDGD-------P-------EPIQKLQD   77 (622)
Q Consensus        65 -----------------------------------------------------~~~~-------~-------~~~~~~~~   77 (622)
                                                                           ..+.       .       .....+..
T Consensus       137 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~  216 (577)
T 2ymu_A          137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT  216 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred             CCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEE
Confidence                                                                 0000       0       00011122


Q ss_pred             hc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          78 LV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        78 ~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      +. +...+.+++|+|++++|++++.+ +.|++||. +++.+..+.+|...+                 .+++|+|++++|
T Consensus       217 ~~~~~~~v~~~~~s~dg~~l~~~~~d-~~i~~w~~-~~~~~~~~~~~~~~v-----------------~~v~~~~d~~~l  277 (577)
T 2ymu_A          217 LTGHSSSVRGVAFSPDGQTIASASDD-KTVKLWNR-NGQLLQTLTGHSSSV-----------------NGVAFRPDGQTI  277 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETT-SCEEEECT-TSCEEEEECCCSSCE-----------------EEEEECTTSSEE
T ss_pred             EecCCCCEEEEEECCCCCEEEEEeCC-CEEEEEeC-CCCEEEEEecCCCCE-----------------EEEEEcCCCCEE
Confidence            22 34567799999999999999975 99999996 578888999999888                 599999999999


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      ++++.|+.|++|+.. ++....+..|.           ..|.+++|+|++++|++++.|+.|++|++.. ..+..+.+|.
T Consensus       278 ~~~~~d~~i~~w~~~-~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~  344 (577)
T 2ymu_A          278 ASASDDKTVKLWNRN-GQLLQTLTGHS-----------SSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS  344 (577)
T ss_dssp             EEEETTSCEEEEETT-SCEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS
T ss_pred             EEEeCCCEEEEEeCC-CcEEEEEecCC-----------CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC
Confidence            999999999999964 45555555554           3589999999999999999999999999754 4567788999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      ..+.+++|+|++++|++++.|+.|++||. +++.+..+. +...|.+++|+|+++ ++++++.++.+++||. +.+.+..
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~  421 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT  421 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEE
Confidence            99999999999999999999999999995 566666665 788999999999987 5778889999999995 4566777


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccc
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVL  395 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~  395 (622)
                      +..|...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||...  
T Consensus       422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--  498 (577)
T 2ymu_A          422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--  498 (577)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--
Confidence            8889999999999999999999999999999996 5788889999999999999999999999999999999999652  


Q ss_pred             ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEE
Q psy2110         396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIA  475 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~  475 (622)
                              ..+..+..+  ...+.+++|+|||++|++++. |+.|++||. +++++..+.+|.+. |++++|+|++++|+
T Consensus       499 --------~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~-dg~v~lwd~-~~~~~~~~~~h~~~-v~~~~fs~dg~~l~  565 (577)
T 2ymu_A          499 --------QLLQTLTGH--SSSVRGVAFSPDGQTIASASD-DKTVKLWNR-NGQLLQTLTGHSSS-VWGVAFSPDGQTIA  565 (577)
T ss_dssp             --------CEEEEEECC--SSCEEEEEECTTSSCEEEEET-TSEEEEECT-TSCEEEEEECCSSC-EEEEEECTTSSCEE
T ss_pred             --------CEEEEEeCC--CCCEEEEEEcCCCCEEEEEEC-cCEEEEEeC-CCCEEEEEcCCCCC-EEEEEEcCCCCEEE
Confidence                    445555543  345788999999999999997 999999996 68899999999987 99999999999999


Q ss_pred             EEe-CCcEEEee
Q psy2110         476 SIS-SGVVSLWA  486 (622)
Q Consensus       476 s~~-dg~v~iw~  486 (622)
                      +++ |++|++||
T Consensus       566 s~~~D~~i~~Wd  577 (577)
T 2ymu_A          566 SASSDKTVKLWN  577 (577)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEeCCCEEEEeC
Confidence            999 99999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.7e-52  Score=478.42  Aligned_cols=443  Identities=16%  Similarity=0.234  Sum_probs=372.5

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      ++.|++++|||||++||+|+.||+|+|||+.+.+..               .++++++++++.|+.|++||+.+.     
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-----  689 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-----  689 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-----
Confidence            368999999999999999999999999999876443               457889999999999999998642     


Q ss_pred             CCCCccchhhhhh-ccccceeEEEEcC--CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcccccc
Q psy2110          66 DGDPEPIQKLQDL-VNKTMWKKCCFSG--DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCIS  142 (622)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~~~~~~~~sp--~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  142 (622)
                             +.+..+ .+...+.+++|+|  ++.++++++.+ +.|++||+.+++++..+.+|.+.+               
T Consensus       690 -------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~h~~~v---------------  746 (1249)
T 3sfz_A          690 -------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQKECRNTMFGHTNSV---------------  746 (1249)
T ss_dssp             -------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETT-SCEEEEETTSSSEEEEECCCSSCE---------------
T ss_pred             -------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCC-CeEEEEECCCcchhheecCCCCCE---------------
Confidence                   122222 2445678999999  55578888865 999999999999999999999988               


Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCC-------------------cc---------------
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE-------------------FD---------------  188 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------------~~---------------  188 (622)
                        ++++|+|++++|++++.||.|++||+.++.....+.......                   ..               
T Consensus       747 --~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          747 --NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             --EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             --EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence              599999999999999999999999998875544332111000                   00               


Q ss_pred             ----------cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC
Q psy2110         189 ----------GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN  258 (622)
Q Consensus       189 ----------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~  258 (622)
                                ........+.+++|+|+++++++++.++.|++|++.++.....+.+|...|.+++|+|++++|++++.|+
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                      0001234678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEECCCCcE-----------------------------E---------EEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         259 NVCIWDVLTGEC-----------------------------E---------QKYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       259 ~i~iwd~~~~~~-----------------------------~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      .|++|++.+...                             .         ........+.+++|+|++. ++++++.++
T Consensus       905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g  983 (1249)
T 3sfz_A          905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDG  983 (1249)
T ss_dssp             CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTS
T ss_pred             eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCC
Confidence            999999653100                             0         0112356789999999987 678889999


Q ss_pred             cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110         301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      .+++|++.+......+..|...+.+++|+|+|+++++++.||.|++||+.+++.. .+..|...|.+++|+|++ .++++
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~ 1061 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSW 1061 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEE
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEE
Confidence            9999999999988889999999999999999999999999999999999998766 456889999999999976 47889


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                      +.|+.|++||+.         .......+..+.  ..+.+++|+|+|+++++++. |+.|++||+.+++++..+.+|.+.
T Consensus      1062 ~~dg~v~vwd~~---------~~~~~~~~~~~~--~~v~~~~~s~d~~~l~s~s~-d~~v~iwd~~~~~~~~~l~~h~~~ 1129 (1249)
T 3sfz_A         1062 SFDGTVKVWNVI---------TGRIERDFTCHQ--GTVLSCAISSDATKFSSTSA-DKTAKIWSFDLLSPLHELKGHNGC 1129 (1249)
T ss_dssp             ESSSEEEEEETT---------TTCCCEEEECCS--SCCCCEEECSSSSSCEEECC-SSCCCEECSSSSSCSBCCCCCSSC
T ss_pred             ECCCcEEEEECC---------CCceeEEEcccC--CcEEEEEECCCCCEEEEEcC-CCcEEEEECCCcceeeeeccCCCc
Confidence            999999999998         334455554433  44678999999999999997 999999999999999999999887


Q ss_pred             ceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         461 LLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       461 ~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                       |++++|+|++++|++++ ||.|++|++..
T Consensus      1130 -v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A         1130 -VRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp             -EEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred             -EEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence             99999999999999999 99999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.8e-51  Score=438.29  Aligned_cols=439  Identities=13%  Similarity=0.202  Sum_probs=352.6

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccc----cee----------------cc--cCceEEeecCCceEEEeechh
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL----ELK----------------AS--RGNCLLVNTGDRLIRVYNHQE   59 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~----~~~----------------~~--~~~~l~~~~~d~~i~~w~~~~   59 (622)
                      ..|++++|||||++||+++ ++.|+||++.+.    +..                .+  ++++|++++.|+.|++|++..
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            5789999999999999988 799999999765    221                45  788999999999999999953


Q ss_pred             hhhcCCCCCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeec
Q psy2110          60 VLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFD  135 (622)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  135 (622)
                      .....    ......+..+. +...+.+++|+|++++|++++.+.   +.|++||  +++.+..+.+|...+        
T Consensus        98 ~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v--------  163 (615)
T 1pgu_A           98 DKESN----SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI--------  163 (615)
T ss_dssp             EGGGT----EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE--------
T ss_pred             Ccccc----cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE--------
Confidence            21000    00011122222 455678999999999999998642   5677776  788899999999988        


Q ss_pred             CccccccceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEe
Q psy2110         136 GALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGC  213 (622)
Q Consensus       136 ~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~  213 (622)
                               ++++|+|+++ +|++++.|+.|++||+.+++....+..|....        ..|.+++|+|+ +++|++++
T Consensus       164 ---------~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          164 ---------NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG--------SFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             ---------EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT--------CCEEEEEECSTTCCEEEEEE
T ss_pred             ---------EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC--------ceEEEEEECCCCCCEEEEEe
Confidence                     5999999998 89999999999999999988887777664310        14899999999 99999999


Q ss_pred             CCCeEEEEEcCCCceEEEe-c---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-----CCeEEEE
Q psy2110         214 NDGRIVLWDFLTRGIAKII-S---AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-----SPILKVQ  284 (622)
Q Consensus       214 ~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~~  284 (622)
                      .++.|++||+.+++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+...     ..+.++.
T Consensus       227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (615)
T 1pgu_A          227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  305 (615)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence            9999999999999999988 6   899999999999 9999999999999999999999999888854     6788888


Q ss_pred             EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE------------------------------------
Q psy2110         285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF------------------------------------  328 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~------------------------------------  328 (622)
                      |. ++. .+++++.++.+++||+.+...+..+..|...+.+++|                                    
T Consensus       306 ~~-~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~  383 (615)
T 1pgu_A          306 AT-GNG-RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA  383 (615)
T ss_dssp             EE-ETT-EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred             eC-CCC-eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence            86 444 6888889999999998765555444444333333222                                    


Q ss_pred             -------------------------------eeC--------------------------------------CCEEEEEe
Q psy2110         329 -------------------------------DRR--------------------------------------GQHVVTGN  339 (622)
Q Consensus       329 -------------------------------~~~--------------------------------------~~~l~~~~  339 (622)
                                                     +|+                                      ++++++++
T Consensus       384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  463 (615)
T 1pgu_A          384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL  463 (615)
T ss_dssp             TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred             cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence                                           011                                      45566666


Q ss_pred             c-CCeEEEEeCCCccEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110         340 S-KGKVLVLSCPALELK-ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       340 ~-dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (622)
                      . +|.|++||+.+++.. ..+..|...|++++|+|++++|++++.|+.|++||+..         ...+..+.. .+...
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~-~h~~~  533 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS---------REVKTSRWA-FRTSK  533 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEECCSC-CCSSC
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC---------CcceeEeec-CCCCc
Confidence            6 777777777766554 55668899999999999999999999999999999983         233333332 13456


Q ss_pred             eeeEEEcC----------CCCeEEEeeCCCCeEEEEECCCC-eeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEe
Q psy2110         418 WKKCCFSG----------DGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLW  485 (622)
Q Consensus       418 ~~~~~~sp----------dg~~l~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw  485 (622)
                      +.+++|+|          ++++|++++. |+.|++||+.++ +++..+.+|... |++++|+|+++ |++++ ||.|++|
T Consensus       534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~-l~s~~~d~~v~iw  610 (615)
T 1pgu_A          534 INAISWKPAEKGANEEEIEEDLVATGSL-DTNIFIYSVKRPMKIIKALNAHKDG-VNNLLWETPST-LVSSGADACIKRW  610 (615)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEET-TSCEEEEESSCTTCCEEETTSSTTC-EEEEEEEETTE-EEEEETTSCEEEE
T ss_pred             eeEEEEcCccccccccccCCCEEEEEcC-CCcEEEEECCCCceechhhhcCccc-eEEEEEcCCCC-eEEecCCceEEEE
Confidence            78999999          9999999997 999999999998 788899999876 99999999999 99999 9999999


Q ss_pred             ecC
Q psy2110         486 AQN  488 (622)
Q Consensus       486 ~~~  488 (622)
                      ++.
T Consensus       611 ~~~  613 (615)
T 1pgu_A          611 NVV  613 (615)
T ss_dssp             EEC
T ss_pred             eee
Confidence            985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-51  Score=451.90  Aligned_cols=451  Identities=13%  Similarity=0.129  Sum_probs=336.1

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee-------------cccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK-------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG   67 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~-------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~   67 (622)
                      ++.|+|++|+|+|++||+|+.||+|+||+....+..             +..+++|++++.|++|++||+...       
T Consensus        17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~-------   89 (902)
T 2oaj_A           17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ-------   89 (902)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC-------
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC-------
Confidence            367999999999999999999999999998765332             223678999999999999998642       


Q ss_pred             CCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE-----------EEEeccCcceeEEEEeecC
Q psy2110          68 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-----------KILHGTKGELLLDVVEFDG  136 (622)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~  136 (622)
                           +.+..+.++..+.+++|+|++++|++|+.+ |.|++||+.++++.           ..+.+|.+.|         
T Consensus        90 -----~~~~~~~~~~~V~~v~~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V---------  154 (902)
T 2oaj_A           90 -----KVLTTVFVPGKITSIDTDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI---------  154 (902)
T ss_dssp             -----SEEEEEECSSCEEEEECCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC---------
T ss_pred             -----cEEEEEcCCCCEEEEEECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccccccccccCCCCe---------
Confidence                 122333455678899999999999999975 99999999988764           1224566655         


Q ss_pred             ccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccc-------cccccceEEEEECCCCCE
Q psy2110         137 ALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGA-------LDCISLAVTCAFNKRGTL  208 (622)
Q Consensus       137 ~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~  208 (622)
                              ++++|+|+ +.+|++|+.||.| +||+.+++....+..+..+...+.       ......|.+++|+|+|++
T Consensus       155 --------~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          155 --------VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             --------CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             --------EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence                    69999996 4789999999999 999999887777765521100000       001145899999999999


Q ss_pred             EEEEeCCCeEEEEEcCCCceEEE--ec---c-------------CCcCeeEEEEc----CCC-CEEEEEeCC-----CcE
Q psy2110         209 LAVGCNDGRIVLWDFLTRGIAKI--IS---A-------------HMHPVCSISWS----RNG-YKIISASTD-----NNV  260 (622)
Q Consensus       209 l~~~~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~~~~s----~~~-~~l~s~~~d-----~~i  260 (622)
                      |++++.|+.|++||+.+++++..  +.   .             |...|++++|+    |++ ..|++|+.+     +.+
T Consensus       226 lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v  305 (902)
T 2oaj_A          226 IITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSL  305 (902)
T ss_dssp             EEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceE
Confidence            99999999999999999887653  31   2             34579999995    443 467777665     378


Q ss_pred             EEEECC------------------CCcEEEEEe--CCCCeEEEEEeCC---------CCeEEEEeeCCCcEEEEEecCCc
Q psy2110         261 CIWDVL------------------TGECEQKYR--FPSPILKVQFHPR---------NDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       261 ~iwd~~------------------~~~~~~~~~--~~~~v~~~~~~~~---------~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      .+|++.                  +++..+.+.  +...+..+.+.++         +...+++.+.++.+++|++.++.
T Consensus       306 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          306 TMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             EEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence            899842                  234455554  5678888888662         22356777789999999986553


Q ss_pred             eeec-------ccC----------------------------------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         312 QIVP-------IDE----------------------------------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       312 ~~~~-------~~~----------------------------------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ....       +..                                  |...+..++|+|++++|++|+.|++|++||+.
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~  465 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDAS  465 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESS
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECC
Confidence            2211       222                                  22333445567899999999999999999998


Q ss_pred             CccEE----EEE--e-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCC-------C------------
Q psy2110         351 ALELK----ASF--K-----ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK-------D------------  400 (622)
Q Consensus       351 ~~~~~----~~~--~-----~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~------------  400 (622)
                      ++...    ...  .     +|...|.+++|+|++++||+++.|++|+||++......+.       .            
T Consensus       466 ~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (902)
T 2oaj_A          466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN  545 (902)
T ss_dssp             CCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred             CccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccC
Confidence            76421    111  1     7888999999999999999999999999999985321000       0            


Q ss_pred             C-----------C------CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-----Ee-cC
Q psy2110         401 G-----------D------PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-----LH-GT  457 (622)
Q Consensus       401 ~-----------~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-----~~-~~  457 (622)
                      +           .      ..++..+..  +...+.+++||||| +||+|+. |++|+|||+.++..+..     +. +|
T Consensus       546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~-D~tv~lwd~~~~~~~~~~~~~~~~~gh  621 (902)
T 2oaj_A          546 TNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYA-AGSLMLIDRRGPAIIYMENIREISGAQ  621 (902)
T ss_dssp             SSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEET-TSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred             CccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeC-CCcEEEEECCCCeEEEEeehhHhcccc
Confidence            0           0      011233333  34567899999999 9999997 99999999988876642     22 77


Q ss_pred             CCCceeEEEEC-----CCC---CEEEEEe-CCcEEEeec
Q psy2110         458 KGELLLDVVWH-----PVR---PIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       458 ~~~~v~~v~~s-----p~~---~~l~s~~-dg~v~iw~~  487 (622)
                      .+. |++++|+     |||   ++|++++ |++|++|++
T Consensus       622 ~~~-V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          622 SAC-VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             CCC-EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             ccc-eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            766 9999999     886   7999999 999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-51  Score=477.81  Aligned_cols=466  Identities=14%  Similarity=0.182  Sum_probs=370.7

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cc--cCceEEeecCCceEEEeechhhhhc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------AS--RGNCLLVNTGDRLIRVYNHQEVLNA   63 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~--~~~~l~~~~~d~~i~~w~~~~~~~~   63 (622)
                      ++.|++++|||+|++||+|+.||+|+|||+.+++..               .+  ++.++++++.|+.|++||+....  
T Consensus       657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--  734 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--  734 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--
T ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--
Confidence            367999999999999999999999999999876543               12  45588999999999999986421  


Q ss_pred             CCCCCCccchhhhhh-ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCc-------------ceeE
Q psy2110          64 GKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG-------------ELLL  129 (622)
Q Consensus        64 ~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-------------~v~~  129 (622)
                                ....+ .+...+.+++|+|++++|++++.+ |.|++||+.+++....+.....             .+..
T Consensus       735 ----------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          735 ----------CRNTMFGHTNSVNHCRFSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             ----------EEEEECCCSSCEEEEEECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             ----------hhheecCCCCCEEEEEEecCCCEEEEEECC-CeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence                      12222 344567899999999999999975 9999999998887766543210             0000


Q ss_pred             EEE---------eecCc----------------cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccC
Q psy2110         130 DVV---------EFDGA----------------LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  184 (622)
Q Consensus       130 ~~~---------~~~~~----------------~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~  184 (622)
                      ...         ...+.                ......|.+++|+|+++++++++.||.|++|++.++.....+..|..
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  883 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS  883 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence            000         00000                02234668999999999999999999999999998877766665543


Q ss_pred             CCc----------------cccc----------------------------------------------------ccccc
Q psy2110         185 PEF----------------DGAL----------------------------------------------------DCISL  196 (622)
Q Consensus       185 ~~~----------------~~~~----------------------------------------------------~~~~~  196 (622)
                      ...                .+.+                                                    .....
T Consensus       884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1249)
T 3sfz_A          884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ  963 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence            200                0000                                                    00123


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  276 (622)
                      +.+++|+|+++++++|+.+|.|++|++.+++....+.+|...|++++|+|++++|++++.||.|++||+.+++......+
T Consensus       964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred             EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence            56667777777777777777777777777777888889999999999999999999999999999999999998877778


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                      ...+.++.|+|++  .+++++.++.+++||+.++.....+..|...+.+++|+|+++++++++.||.|++||+.+++++.
T Consensus      1044 ~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A         1044 QETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp             SSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred             CCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence            9999999999976  47888999999999999999888999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-cccceeeeeEEEcCCCCeEEEeeC
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-LVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      .+.+|...|++++|+|++++|++++.||.|++||+.........   .+...... ..+...+.+++|+|||++|++++ 
T Consensus      1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~- 1197 (1249)
T 3sfz_A         1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC---APISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197 (1249)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC---CCCC-------CCSCCCEEEECTTSSCEEEES-
T ss_pred             eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe---ccccccccccccCceEEEEEECCCCCEEEECC-
Confidence            99999999999999999999999999999999999843221110   00011111 12334577899999999999875 


Q ss_pred             CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                        |.|++||+.+++.+..+.+|... |.+++|+|++++|++++ ||.|++|++.
T Consensus      1198 --g~v~vwd~~~g~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1198 --GYLKWWNVATGDSSQTFYTNGTN-LKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             --SSEEEBCSSSCBCCCCCCCSSCC-CCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             --CeEEEEECCCCceeeeeeccCCc-ccEEEECCCCCEEEEecCCcEEEEEeec
Confidence              68999999999999999888776 99999999999999999 9999999973

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-47  Score=420.74  Aligned_cols=473  Identities=11%  Similarity=0.063  Sum_probs=327.6

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee--------------cccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG   67 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~   67 (622)
                      ..|.+++|+| |++||+++.|++|+|||+.+.+..              .++++++++++.|+.|++||+.+........
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            5799999999 889999999999999999875432              4578999999999999999987532110000


Q ss_pred             CCccchhh-hh-hccccceeEEEEcCC-CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEee-cCccccccc
Q psy2110          68 DPEPIQKL-QD-LVNKTMWKKCCFSGD-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEF-DGALDCISL  143 (622)
Q Consensus        68 ~~~~~~~~-~~-~~~~~~~~~~~~sp~-~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  143 (622)
                        ...... .. ..+...+.+++|+|+ +..|++|+.+ +.| +||+.+++.+..+.+|...-....... .........
T Consensus       138 --~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d-g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~  213 (902)
T 2oaj_A          138 --DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY-VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK  213 (902)
T ss_dssp             --CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS-CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred             --ccccccccccccCCCCeEEEEEccCCCCEEEEEeCC-CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence              000000 11 224456889999996 4678887764 999 999999999998887721100000000 000001123


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc--cc---cccCCC--cccccccccceE------------------
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI--IS---AHMHPE--FDGALDCISLAV------------------  198 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~--~~---~~~~~~--~~~~~~~~~~v~------------------  198 (622)
                      |++++|+|+|++||+|+.||+|++||+.+++.+..  +.   .+....  ..+.+.....|.                  
T Consensus       214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s  293 (902)
T 2oaj_A          214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS  293 (902)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence            57999999999999999999999999988876532  11   110000  000000001122                  


Q ss_pred             -----------------------------------------------------EEEECC----------CCCEEEEEeCC
Q psy2110         199 -----------------------------------------------------TCAFNK----------RGTLLAVGCND  215 (622)
Q Consensus       199 -----------------------------------------------------~~~~s~----------~g~~l~~~~~d  215 (622)
                                                                           .+.+.+          +...+++++.|
T Consensus       294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d  373 (902)
T 2oaj_A          294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN  373 (902)
T ss_dssp             EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred             CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence                                                                 233322          22355666667


Q ss_pred             CeEEEEEcCCCceEEE-----------------------------------------eccCCcCeeEEEEcCCCCEEEEE
Q psy2110         216 GRIVLWDFLTRGIAKI-----------------------------------------ISAHMHPVCSISWSRNGYKIISA  254 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~~~~s~~~~~l~s~  254 (622)
                      +.|++|++.++.....                                         +.+|...+.+++|+|++++|++|
T Consensus       374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg  453 (902)
T 2oaj_A          374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG  453 (902)
T ss_dssp             SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred             CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence            7788888765532211                                         23344445556668899999999


Q ss_pred             eCCCcEEEEECCCCcEE----EE--E------eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-----------
Q psy2110         255 STDNNVCIWDVLTGECE----QK--Y------RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-----------  311 (622)
Q Consensus       255 ~~d~~i~iwd~~~~~~~----~~--~------~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----------  311 (622)
                      +.|++|++||+.++...    ..  +      .|...|.+++|+|+++ ++++++.|+.|++|++.+.+           
T Consensus       454 s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~  532 (902)
T 2oaj_A          454 HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESG  532 (902)
T ss_dssp             ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC----------
T ss_pred             cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCccccCccccCCCc
Confidence            99999999999887421    11  1      3667899999999998 68899999999999997652           


Q ss_pred             ----------------------------------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE
Q psy2110         312 ----------------------------------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS  357 (622)
Q Consensus       312 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  357 (622)
                                                        ++..+..|...|.+++|+|+| +|++|+.|++|++||+++...+..
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~  611 (902)
T 2oaj_A          533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM  611 (902)
T ss_dssp             -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE
Confidence                                              255677899999999999999 999999999999999988776642


Q ss_pred             -----Ee-cCCCCEEEEEEc-----CCC---CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc---cceeeee
Q psy2110         358 -----FK-ASTTAIKSIEFA-----RRG---NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV---NKTMWKK  420 (622)
Q Consensus       358 -----~~-~~~~~i~~~~~s-----~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  420 (622)
                           +. +|...|++++|+     |||   ++|++++.|++|++||+...      ........+.++.   ....+..
T Consensus       612 ~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~------~~g~~~~~~~~~~~~~~~~~v~~  685 (902)
T 2oaj_A          612 ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPA------SGGKFDVQLMDITNVTSKGPIHK  685 (902)
T ss_dssp             EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEEC------GGGCEEEEEEEEEECCSSCCCCE
T ss_pred             eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecC------CCCcEEEEecCceecCCCCceEE
Confidence                 22 788999999999     886   89999999999999998210      0112333333332   1233334


Q ss_pred             EE-Ec----------------------CCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE---E------EC
Q psy2110         421 CC-FS----------------------GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV---V------WH  468 (622)
Q Consensus       421 ~~-~s----------------------pdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v---~------~s  468 (622)
                      ++ |+                      ++|..|+++   +..|+||++.++++.+...+|... +..+   .      |+
T Consensus       686 i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~---~~~ir~~~~~~~k~~~k~~~~~~~-~~~v~~~~~~~~~~~~  761 (902)
T 2oaj_A          686 IDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG---FDDIRLITLGKSKSTHKGFKYPLA-ATGLSYISTVEKNNDR  761 (902)
T ss_dssp             EEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC---SSEEEEECTTCCCEEEEECSSCEE-EEEEEEEEEECSSSCE
T ss_pred             EEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe---ccceEEEeCccccceeeEccccee-eeEEEEEEeccccccc
Confidence            43 54                      566555554   457999999999999888777633 6665   6      78


Q ss_pred             CCCCEEEEEe-CCcEEEeecCCcc
Q psy2110         469 PVRPIIASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       469 p~~~~l~s~~-dg~v~iw~~~~~~  491 (622)
                      +++..|++.. ||+|++|++...+
T Consensus       762 ~~~~~l~~~~~~g~i~~~s~p~l~  785 (902)
T 2oaj_A          762 KNLTVIITLEINGHLRVFTIPDFK  785 (902)
T ss_dssp             EEEEEEEEEETTSEEEEEETTTCC
T ss_pred             cCceEEEEEeCCCcEEEEECcchH
Confidence            8899999999 9999999996543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.7e-47  Score=419.47  Aligned_cols=407  Identities=17%  Similarity=0.242  Sum_probs=339.2

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      ++.|++++|||+|++||+|+.||.|+|||+.+++..               .+++++|++++.|+.|++|++.+.     
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-----   87 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG-----   87 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-----
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-----
Confidence            468999999999999999999999999998775433               457889999999999999998642     


Q ss_pred             CCCCccchhhhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC-ceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          66 DGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG-NLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        66 ~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                             ..+..+. +...+.+++|+|++++|++++.+ +.|++||+.++ .....+.+|...+                
T Consensus        88 -------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~v----------------  143 (814)
T 3mkq_A           88 -------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV----------------  143 (814)
T ss_dssp             -------CEEEEEECCSSCEEEEEECSSSSEEEEEETT-SEEEEEEGGGTSEEEEEEECCSSCE----------------
T ss_pred             -------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCC-CEEEEEECCCCceEEEEEcCCCCcE----------------
Confidence                   2222233 44568899999999999999975 99999999887 7778889999888                


Q ss_pred             eeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC--CCCEEEEEeCCCeEEE
Q psy2110         144 AVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGRIVL  220 (622)
Q Consensus       144 v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~i~i  220 (622)
                       ++++|+| ++.+|++++.||.|++||+.++.....+..+..          ..+.+++|+|  ++++|++++.+|.|++
T Consensus       144 -~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~~  212 (814)
T 3mkq_A          144 -MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----------RGVNYVDYYPLPDKPYMITASDDLTIKI  212 (814)
T ss_dssp             -EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT----------TCCCEEEECCSTTCCEEEEECTTSEEEE
T ss_pred             -EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC----------CCEEEEEEEECCCCCEEEEEeCCCEEEE
Confidence             5999999 889999999999999999988776666554432          2478899999  9999999999999999


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+.+++....+. +...+.+++|+|++..++++++.+
T Consensus       213 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  292 (814)
T 3mkq_A          213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (814)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC
Confidence            9999999999999999999999999999999999999999999999999988887 668999999999998776666677


Q ss_pred             CcEEEEEecCCceeecc-------------------------------------------cCCCCceEEEEEeeCCCEEE
Q psy2110         300 HAAVLVDTDGDHQIVPI-------------------------------------------DEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~l~  336 (622)
                      +.+.+|++........+                                           ..+...+.+++|+|+|++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la  372 (814)
T 3mkq_A          293 NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVT  372 (814)
T ss_dssp             TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEE
T ss_pred             CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEE
Confidence            88888887543221111                                           12334567899999999999


Q ss_pred             EEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110         337 TGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT  416 (622)
Q Consensus       337 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (622)
                      +++ ++.+.+|++.......     .+.+.+++|+|++++|++++.++.|++|+.-.                 .  ...
T Consensus       373 ~~~-~~~~~i~~~~~~~~~~-----~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-----------------~--~~~  427 (814)
T 3mkq_A          373 VVG-DGEYVIYTALAWRNKA-----FGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-----------------E--VTS  427 (814)
T ss_dssp             EEE-TTEEEEEETTTTEEEE-----EEECSEEEECTTSSCEEEECTTCCEEEEETTE-----------------E--CTT
T ss_pred             Eec-CCEEEEEECccccccC-----CCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-----------------C--ccc
Confidence            988 8999999987654332     34577999999999999999999999996431                 0  112


Q ss_pred             eeeeEEEcCCC---CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110         417 MWKKCCFSGDG---EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       417 ~~~~~~~spdg---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  477 (622)
                      .+.+++|+|+|   ++|++++. ++.|++||+.+++.+..+.+|..    .++|+|++++|+++
T Consensus       428 ~v~~~~~s~dg~~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~----~v~~s~dg~~la~~  486 (814)
T 3mkq_A          428 WSVPMHSAIDRLFSGALLGVKS-DGFVYFFDWDNGTLVRRIDVNAK----DVIWSDNGELVMIV  486 (814)
T ss_dssp             CCCCCSSCCCEEECSSSEEEEE-TTEEEEECTTTCCEEEEESSCEE----EEEECTTSSEEEEE
T ss_pred             eEEcCCcCccceecceEEEEec-CCEEEEEECCcCcEEEEEecCCC----EEEEcCCCCEEEEE
Confidence            23456899998   67888876 89999999999999999887753    89999999999999

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-45  Score=394.00  Aligned_cols=408  Identities=13%  Similarity=0.181  Sum_probs=329.0

Q ss_pred             cccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc-cccc-eeEEEEcC--CCCEEEEecCCCCeEEEEEcC
Q psy2110          37 ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTM-WKKCCFSG--DGEYVCAGSARQHALYIWEKS  112 (622)
Q Consensus        37 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~sp--~~~~l~~~~~~~~~i~vwd~~  112 (622)
                      .++++++++++ ++.+++|++.+..        .+......+. +... +.+++|+|  ++++|++++.+ +.|++||+.
T Consensus        27 spdg~~l~~~~-~~~v~v~~~~~~~--------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~d-g~v~vw~~~   96 (615)
T 1pgu_A           27 DPTTNAIAYPC-GKSAFVRCLDDGD--------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-GKVIVWGWT   96 (615)
T ss_dssp             ETTTTEEEEEE-TTEEEEEECCSSC--------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-SEEEEEEEE
T ss_pred             CCCCCEEEEec-CCeEEEEECCCCC--------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCC-CEEEEEeCC
Confidence            56788888887 7899999986320        0002222333 3455 78999999  99999999975 999999997


Q ss_pred             CC--------ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----CcEEEEecCCcccccccc
Q psy2110         113 VG--------NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       113 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw~~~~~~~~~~~~  180 (622)
                      ++        +....+..|...+                 .+++|+|++++|++++.+    +.|++|+  .++....+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~  157 (615)
T 1pgu_A           97 FDKESNSVEVNVKSEFQVLAGPI-----------------SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS  157 (615)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCE-----------------EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred             CCcccccccccccchhhcccccE-----------------EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence            55        7778888888888                 599999999999999987    6888888  455666665


Q ss_pred             cccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEeccCCc---CeeEEEEcCC-CCEEEEEe
Q psy2110         181 AHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMH---PVCSISWSRN-GYKIISAS  255 (622)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~s~~  255 (622)
                      .|.           ..|.+++|+|+++ ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +++|++++
T Consensus       158 ~~~-----------~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          158 GHS-----------QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             SCS-----------SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             cCC-----------ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence            554           3589999999998 899999999999999999999999999999   9999999999 99999999


Q ss_pred             CCCcEEEEECCCCcEEEEE-----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC----CCceEEE
Q psy2110         256 TDNNVCIWDVLTGECEQKY-----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED----SDLSIVA  326 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~  326 (622)
                      .|+.|++||+.+++.+..+     .+...|.+++|+ ++. ++++++.++.+++||+++...+..+..+    ...+..+
T Consensus       227 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          227 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence            9999999999999999998     688999999999 655 6888899999999999998887777766    3566777


Q ss_pred             EEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC---------------------------------
Q psy2110         327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR---------------------------------  373 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~---------------------------------  373 (622)
                      .++ ++.++++++.+|.|++||+.+++.+..+..|...|++++| |+                                 
T Consensus       305 ~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~  382 (615)
T 1pgu_A          305 VAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK  382 (615)
T ss_dssp             EEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS
T ss_pred             EeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECC
Confidence            775 8999999999999999999999888888887777777666 54                                 


Q ss_pred             CCEEEEEeCCCcEEEEecccccccC--------C-------------------CC-------------------------
Q psy2110         374 GNCLLVNTGDRLIRVYNHQEVLNAG--------K-------------------DG-------------------------  401 (622)
Q Consensus       374 ~~~l~~~~~d~~i~i~d~~~~~~~~--------~-------------------~~-------------------------  401 (622)
                      +..|++++.|+.|++|++.......        .                   .+                         
T Consensus       383 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  462 (615)
T 1pgu_A          383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG  462 (615)
T ss_dssp             TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE
T ss_pred             CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEe
Confidence            5566677777777777665321000        0                   00                         


Q ss_pred             -C-CCccee----------eeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec-CCCCceeEEEEC
Q psy2110         402 -D-PEPIQK----------LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG-TKGELLLDVVWH  468 (622)
Q Consensus       402 -~-~~~~~~----------~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~v~~s  468 (622)
                       . ...+..          .....+...+.+++|+|+|++|++++. |+.|++||+.+++++..+.+ |... |++++|+
T Consensus       463 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~h~~~-v~~~~~s  540 (615)
T 1pgu_A          463 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQSREVKTSRWAFRTSK-INAISWK  540 (615)
T ss_dssp             ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEECCSCCCSSC-EEEEEEC
T ss_pred             ecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCCCCcceeEeecCCCCc-eeEEEEc
Confidence             0 000100          111123356788999999999999997 99999999999999999888 7766 9999999


Q ss_pred             C----------CCCEEEEEe-CCcEEEeecCCc
Q psy2110         469 P----------VRPIIASIS-SGVVSLWAQNQV  490 (622)
Q Consensus       469 p----------~~~~l~s~~-dg~v~iw~~~~~  490 (622)
                      |          ++++|++++ ||.|++|++...
T Consensus       541 p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             CccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence            9          999999999 999999999753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-44  Score=363.08  Aligned_cols=284  Identities=18%  Similarity=0.312  Sum_probs=266.0

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++|+|++++|++|+.| ++|+|||+.+++....+.+|.+.|                 ++++|+|++++|++|
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V-----------------~~v~~~~~~~~l~sg  168 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSV-----------------QDISFDHSGKLLASC  168 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcE-----------------EEEEEcCCCCEEEEE
Confidence            45678899999999999999975 999999999999999999999998                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      +.|++|++||+.+++.+..+..|..           .|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|
T Consensus       169 s~D~~i~iwd~~~~~~~~~~~~h~~-----------~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v  237 (410)
T 1vyh_C          169 SADMTIKLWDFQGFECIRTMHGHDH-----------NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  237 (410)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCSS-----------CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCceeEEEcCCCC-----------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence            9999999999999888888877653           58999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCC-------------------CeEEEEeeCC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRN-------------------DHMFLVCPMR  299 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-------------------~~~~~~~~~~  299 (622)
                      .++.|++++.+|++++.|+.|++||+.++++...+. |...|.+++|+|++                   ..++++++.|
T Consensus       238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            999999999999999999999999999999988886 78899999999973                   3478999999


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      +.+++||++++..+..+..|...+.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++
T Consensus       318 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  397 (410)
T 1vyh_C          318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT  397 (410)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecc
Q psy2110         380 NTGDRLIRVYNHQ  392 (622)
Q Consensus       380 ~~~d~~i~i~d~~  392 (622)
                      ++.|+.|++|+++
T Consensus       398 gs~D~~i~vW~~r  410 (410)
T 1vyh_C          398 GSVDQTVKVWECR  410 (410)
T ss_dssp             EETTSEEEEEC--
T ss_pred             EeCCCcEEEEeCC
Confidence            9999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.6e-43  Score=345.38  Aligned_cols=292  Identities=19%  Similarity=0.367  Sum_probs=251.1

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      +....+.+|.+.|                 ++++|+|++++|++|+.||+|++||..+++....+..+.           
T Consensus        55 ~~~~~l~gH~~~V-----------------~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~-----------  106 (354)
T 2pbi_B           55 KTRRTLKGHGNKV-----------------LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC-----------  106 (354)
T ss_dssp             CEEEEEECCSSCE-----------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-----------
T ss_pred             EEEEEecCCCCeE-----------------EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC-----------
Confidence            5667899999998                 599999999999999999999999998887766665543           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCC------ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR------GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                      ..|.+++|+|+|++|++|+.|+.+++|++...      .....+..|...|.+++|+|++..|++++.|++|++||+.++
T Consensus       107 ~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~  186 (354)
T 2pbi_B          107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG  186 (354)
T ss_dssp             SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence            34789999999999999999999999998643      345667789999999999999999999999999999999998


Q ss_pred             cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         269 ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       269 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      +++..+. |...|.+++|+|+                                         +++++|++|+.||.|++|
T Consensus       187 ~~~~~~~~h~~~v~~~~~~~~-----------------------------------------~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          187 QLLQSFHGHGADVLCLDLAPS-----------------------------------------ETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECCC-----------------------------------------SSCCEEEEEETTSCEEEE
T ss_pred             eEEEEEcCCCCCeEEEEEEeC-----------------------------------------CCCCEEEEEeCCCeEEEE
Confidence            8877665 4444554444432                                         246789999999999999


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      |+++++++..+..|...|++++|+|++.+|++++.|++|++||++.         ...+..+........+.+++|+|+|
T Consensus       226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~---------~~~~~~~~~~~~~~~~~~~~~s~~g  296 (354)
T 2pbi_B          226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA---------DREVAIYSKESIIFGASSVDFSLSG  296 (354)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CcEEEEEcCCCcccceeEEEEeCCC
Confidence            9999999999999999999999999999999999999999999983         2233333333333456788999999


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      ++|++++. |+.|++||+.+++.+..+.+|.+. |++++|+|++++|++++ ||+|+||+
T Consensus       297 ~~l~~g~~-d~~i~vwd~~~~~~~~~l~~h~~~-v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          297 RLLFAGYN-DYTINVWDVLKGSRVSILFGHENR-VSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEEET-TSCEEEEETTTCSEEEEECCCSSC-EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEC-CCcEEEEECCCCceEEEEECCCCc-EEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999997 999999999999999999999887 99999999999999999 99999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-43  Score=341.19  Aligned_cols=284  Identities=18%  Similarity=0.255  Sum_probs=259.0

Q ss_pred             ccccceeEEEEcCC----CCEEEEecCCCCeEEEEEcCCCce--EEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          79 VNKTMWKKCCFSGD----GEYVCAGSARQHALYIWEKSVGNL--VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        79 ~~~~~~~~~~~sp~----~~~l~~~~~~~~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      .+...|.+++|+|+    +.+|++|+.| ++|+||++.+++.  ...+.+|...|                 .+++|+++
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v-----------------~~~~~~~~   91 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGV-----------------VSVDISHT   91 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCE-----------------EEEEECSS
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCE-----------------EEEEECCC
Confidence            35567889999985    6689999976 9999999987754  45688999988                 59999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +.++++++.|++|++||+.+++.+..+..+..           .+.+++|+|++++|++++.++.|++|++.+++....+
T Consensus        92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----------~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----------DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTT-----------CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----------cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence            99999999999999999999988777765532           3678999999999999999999999999999999999


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +..+|.+++|+|++. ++++++.|+.|++||++...
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcc
Confidence            9999999999999999999999999999999999999998887 778999999999987 68889999999999999998


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      ....+..|...+.+++|+|++++|++++.|+.|++||+.+++++..+..|...|.+++|+|++++|++++.|+.|++||.
T Consensus       240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             c
Q psy2110         392 Q  392 (622)
Q Consensus       392 ~  392 (622)
                      .
T Consensus       320 p  320 (321)
T 3ow8_A          320 P  320 (321)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-42  Score=342.06  Aligned_cols=279  Identities=15%  Similarity=0.236  Sum_probs=253.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----E
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE----C  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~  270 (622)
                      ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++.+++    .
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~  135 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV  135 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee
Confidence            458999999999999999999999999999999999999999999999999999999999999999999998763    3


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ...+. |...+.++.|++++.  +++++.|+.+++||+.+...+..+..|...+.+++|+|+++++++|+.||.|++||+
T Consensus       136 ~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~  213 (340)
T 1got_B          136 SRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            44444 788999999998874  788999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY  429 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  429 (622)
                      ++++++..+.+|...|++++|+|++++|++++.|+.|++||++.         ...+..+........+.+++|+|+|++
T Consensus       214 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA---------DQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------TEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CcEEEEEccCCcccceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999999983         233333332223346788999999999


Q ss_pred             EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         430 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      |++|+. |+.|++||+.+++.+..+.+|.+. |.+++|+|++.+|++++ ||+|+||+
T Consensus       285 l~~g~~-d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          285 LLAGYD-DFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEET-TSEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEECC-CCeEEEEEcccCcEeeEeecCCCc-EEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999997 999999999999999999999987 99999999999999999 99999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-42  Score=351.70  Aligned_cols=288  Identities=20%  Similarity=0.356  Sum_probs=263.9

Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL  196 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (622)
                      ...+.+|...|                 ++++|+|++.+|++|+.||+|++||+.+++....+..|..           .
T Consensus       101 ~~~l~gh~~~V-----------------~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-----------~  152 (410)
T 1vyh_C          101 KYALSGHRSPV-----------------TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----------S  152 (410)
T ss_dssp             SCEEECCSSCE-----------------EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----------C
T ss_pred             eEeecccCCcE-----------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-----------c
Confidence            45677888888                 5999999999999999999999999999988888887753           5


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-  275 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  275 (622)
                      |.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..+. 
T Consensus       153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  232 (410)
T 1vyh_C          153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG  232 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999998887 


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--------------------CCEE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--------------------GQHV  335 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l  335 (622)
                      |...+.++.++|++. ++++++.|+.+++||+.+......+..|...+.+++|+|+                    |.++
T Consensus       233 h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  311 (410)
T 1vyh_C          233 HREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  311 (410)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             CCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence            778899999999887 6889999999999999999988899999999999999996                    6799


Q ss_pred             EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110         336 VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK  415 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (622)
                      ++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||+.         ....+..+..+  .
T Consensus       312 ~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~---------~~~~~~~~~~h--~  380 (410)
T 1vyh_C          312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---------NKRCMKTLNAH--E  380 (410)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------TSCCCEEEECC--S
T ss_pred             EEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCceEEEEcCC--C
Confidence            999999999999999999999999999999999999999999999999999999997         33455566544  3


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      ..+.+++|+|++.+|++|+. |+.|+||++
T Consensus       381 ~~v~~l~~~~~~~~l~sgs~-D~~i~vW~~  409 (410)
T 1vyh_C          381 HFVTSLDFHKTAPYVVTGSV-DQTVKVWEC  409 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEET-TSEEEEEC-
T ss_pred             CcEEEEEEcCCCCEEEEEeC-CCcEEEEeC
Confidence            45788999999999999997 999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-43  Score=356.21  Aligned_cols=351  Identities=14%  Similarity=0.190  Sum_probs=288.0

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-EEEEeeCCCcEEEEec----CCcc----
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDF----LTRG----  174 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~----~~~~----  174 (622)
                      ..+.+|+++..........|.+.|                 ++++|+|+++ +||+|+.||.|++|++    .+++    
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   87 (425)
T 1r5m_A           25 SIDSSDDLDGFVKILKEIVKLDNI-----------------VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK   87 (425)
T ss_dssp             ---------CCCEECEEEEECSCC-----------------SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE
T ss_pred             cccccccchhhhhheeeeeccCce-----------------EEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc
Confidence            456678887666555556666777                 5999999999 9999999999999999    8776    


Q ss_pred             --cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE
Q psy2110         175 --IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII  252 (622)
Q Consensus       175 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  252 (622)
                        ....+....... .........|.+++|+|++++|++++.+|.|++|+ .+++.+..+..|...|.+++|+|++++|+
T Consensus        88 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (425)
T 1r5m_A           88 LTIIAELRHPFALS-ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHII  165 (425)
T ss_dssp             EEEEEEEECCCCCC-------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccc-ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEE
Confidence              233332211110 00000123699999999999999999999999999 67888889999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCcEEEEEeCC-CC---------------eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         253 SASTDNNVCIWDVLTGECEQKYRFP-SP---------------ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       253 s~~~d~~i~iwd~~~~~~~~~~~~~-~~---------------v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +++.|+.|++||+.+++....+... ..               +.+++|+|++  .+++++.++.+++||+.....+..+
T Consensus       166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~  243 (425)
T 1r5m_A          166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKL  243 (425)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEE
T ss_pred             EEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeee
Confidence            9999999999999999998888733 33               8899999975  4788899999999999998888888


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN  396 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~  396 (622)
                      ..|...+.+++|+|++++|++++.+|.|++||+++++.+..+..|...|.+++|+|++ +|++++.|+.|++||+..   
T Consensus       244 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~---  319 (425)
T 1r5m_A          244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ---  319 (425)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT---
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC---
Confidence            8999999999999999999999999999999999999999999999999999999999 999999999999999973   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe--------------------eEEEEec
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--------------------LVKILHG  456 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~--------------------~~~~~~~  456 (622)
                            ...+..+..  ....+.+++|+|++++|++++. ++.|++||+.+++                    ++..+.+
T Consensus       320 ------~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (425)
T 1r5m_A          320 ------NTLLALSIV--DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS  390 (425)
T ss_dssp             ------TEEEEEEEC--TTCCEEEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECC
T ss_pred             ------CcEeEeccc--CCccEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC
Confidence                  334444443  2346788999999999999997 8999999999888                    8899999


Q ss_pred             CCCC-ceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         457 TKGE-LLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       457 ~~~~-~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      |... .|++++|+|++++|++++ ||.|++|++.
T Consensus       391 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          391 SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            8762 499999999999999999 9999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.6e-42  Score=335.36  Aligned_cols=280  Identities=14%  Similarity=0.269  Sum_probs=252.5

Q ss_pred             cceEEEEECCC----CCEEEEEeCCCeEEEEEcCCCce--EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         195 SLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGI--AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       195 ~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                      ..|.+++|+|+    +.+|++|+.|+.|++|++.+++.  ...+.+|...|.+++|++++.++++++.|++|++||+.++
T Consensus        33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~  112 (321)
T 3ow8_A           33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG  112 (321)
T ss_dssp             SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            45999999985    66899999999999999987654  4568899999999999999999999999999999999999


Q ss_pred             cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         269 ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       269 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      +.+..+. +...+.+++|+|+++ ++++++.++.+++|++.+......+..+...+.+++|+|++++|++|+.||.|++|
T Consensus       113 ~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw  191 (321)
T 3ow8_A          113 KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF  191 (321)
T ss_dssp             EEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            9988887 667899999999987 67888999999999999998888888899999999999999999999999999999


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      |+++++++..+.+|...|++++|+|++++|++++.|+.|++||++.         ......+..+  ...+.+++|+|+|
T Consensus       192 d~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h--~~~v~~~~~sp~~  260 (321)
T 3ow8_A          192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH---------ANLAGTLSGH--ASWVLNVAFCPDD  260 (321)
T ss_dssp             ETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT---------CCEEEEECCC--SSCEEEEEECTTS
T ss_pred             ECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC---------cceeEEEcCC--CCceEEEEECCCC
Confidence            9999999999999999999999999999999999999999999983         3344444433  3456889999999


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      ++|++++. |+.|++||+.+++++..+.+|.+. |.+++|+|++++|++++ ||+|++|+..
T Consensus       261 ~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          261 THFVSSSS-DKSVKVWDVGTRTCVHTFFDHQDQ-VWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SEEEEEET-TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CEEEEEeC-CCcEEEEeCCCCEEEEEEcCCCCc-EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999997 999999999999999999999887 99999999999999999 9999999963

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.6e-42  Score=378.88  Aligned_cols=383  Identities=15%  Similarity=0.171  Sum_probs=318.1

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++|+|++++|++++.+ |.|+|||+.+++.+..+.+|...+                 ++++|+|++++|+++
T Consensus        12 h~~~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~l~~~   73 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPV-----------------RAGKFIARKNWIIVG   73 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEEEGGGTEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcE-----------------EEEEEeCCCCEEEEE
Confidence            34567899999999999999975 999999999999999999999988                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHP  238 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~  238 (622)
                      +.||.|++|++.+++....+..|.           ..|.+++|+|++++|++++.||.|++|++.++ .....+.+|...
T Consensus        74 ~~dg~i~vw~~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           74 SDDFRIRVFNYNTGEKVVDFEAHP-----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred             eCCCeEEEEECCCCcEEEEEecCC-----------CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence            999999999999998888777665           35899999999999999999999999999987 677888899999


Q ss_pred             eeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         239 VCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       239 v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      |.+++|+| ++..|++++.||.|++||+.+++....+.  +...+..++|+|  ++. ++++++.++.+++||+.+...+
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~  221 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCV  221 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEE
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEE
Confidence            99999999 88999999999999999999887766665  348899999999  665 6888899999999999999999


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecc
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNC-LLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~i~d~~  392 (622)
                      ..+..|...+.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++.. +++++.++.+.+|++.
T Consensus       222 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            999999999999999999999999999999999999999999999999999999999999874 2445557778888876


Q ss_pred             cccccC---CCC-----------------------------CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         393 EVLNAG---KDG-----------------------------DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       393 ~~~~~~---~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                      ......   ..+                             ................+.+++|+|+|++|++++  ++.+
T Consensus       302 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--~~~~  379 (814)
T 3mkq_A          302 NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG--DGEY  379 (814)
T ss_dssp             CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE--TTEE
T ss_pred             CCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec--CCEE
Confidence            321100   000                             000000000011122456899999999999988  6899


Q ss_pred             EEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCc----ccccccCCCC
Q psy2110         441 YIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV----ENWSAFAPDF  500 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~----~~~~~~s~~~  500 (622)
                      ++|++.......     .+. +.+++|+|+++++++++ +|.|++|+.-..    ....+|+|++
T Consensus       380 ~i~~~~~~~~~~-----~~~-i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg  438 (814)
T 3mkq_A          380 VIYTALAWRNKA-----FGK-CQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDR  438 (814)
T ss_dssp             EEEETTTTEEEE-----EEE-CSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCE
T ss_pred             EEEECccccccC-----CCc-eEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccc
Confidence            999987554322     223 88999999999999998 999999976422    2234788988

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.9e-42  Score=338.05  Aligned_cols=283  Identities=19%  Similarity=0.316  Sum_probs=253.3

Q ss_pred             hhcc-ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          77 DLVN-KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        77 ~~~~-~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      .+.+ ...+.+++|+|++++|++++.| ++|++||+.+++.+..+..|...+                 .+++|+|++++
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v-----------------~~~~~s~~~~~  111 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWV-----------------MTCAYAPSGNY  111 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCE-----------------EEEEECTTSSE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccE-----------------EEEEECCCCCE
Confidence            3444 4567899999999999999975 999999999999999999999888                 49999999999


Q ss_pred             EEEeeCCCcEEEEecCCccc----ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         156 LAVGCNDGRIVLWDFLTRGI----AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      |++|+.|+.|++|++.++..    ...+..|.           ..|.++.|++++. +++++.|+.|++||+.+++.+..
T Consensus       112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          112 VACGGLDNICSIYNLKTREGNVRVSRELAGHT-----------GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             EEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----------SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCeEEEEECccCCCcceeEEEecCCC-----------ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE
Confidence            99999999999999987532    22233332           3588999998875 88999999999999999999999


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      +.+|.+.|.+++|+|++++|++++.|+.|++||++++++...+. |...|.+++|+|++. ++++++.|+.+++||++..
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCC
Confidence            99999999999999999999999999999999999999988887 788999999999887 6888999999999999988


Q ss_pred             ceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         311 HQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       311 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      ..+..+..  +...+.+++|+|+|+++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i  338 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence            76665543  3346899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q psy2110         389 YN  390 (622)
Q Consensus       389 ~d  390 (622)
                      ||
T Consensus       339 Wd  340 (340)
T 1got_B          339 WN  340 (340)
T ss_dssp             EC
T ss_pred             cC
Confidence            96

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-41  Score=327.90  Aligned_cols=295  Identities=16%  Similarity=0.257  Sum_probs=245.4

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCcc-----cccccccccCCCcc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRG-----IAKIISAHMHPEFD  188 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~  188 (622)
                      .+..++.+|.+.|                 ++++|+|++ ++|++|+.|++|++|++....     .+..+..|.     
T Consensus         8 ~l~~~l~gH~~~V-----------------~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~-----   65 (319)
T 3frx_A            8 VLRGTLEGHNGWV-----------------TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS-----   65 (319)
T ss_dssp             EEEEEECCCSSCE-----------------EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS-----
T ss_pred             EEEEEEccccceE-----------------EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc-----
Confidence            3456789999998                 599999965 799999999999999987532     234455554     


Q ss_pred             cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                            ..|.+++|+|+|++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++..
T Consensus        66 ------~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~  139 (319)
T 3frx_A           66 ------HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ  139 (319)
T ss_dssp             ------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred             ------ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                  35899999999999999999999999999999999999999999999999999999999999999999999754


Q ss_pred             cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      .......|...+.++.++|...                                     ..+++..+++++.|+.|++||
T Consensus       140 ~~~~~~~h~~~v~~~~~~~~~~-------------------------------------~~~~~~~l~s~~~d~~i~~wd  182 (319)
T 3frx_A          140 CLATLLGHNDWVSQVRVVPNEK-------------------------------------ADDDSVTIISAGNDKMVKAWN  182 (319)
T ss_dssp             EEEEECCCSSCEEEEEECCC-------------------------------------------CCEEEEEETTSCEEEEE
T ss_pred             eEEEEeccCCcEEEEEEccCCC-------------------------------------CCCCccEEEEEeCCCEEEEEE
Confidence            3333334777788888877543                                     123566899999999999999


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      +++++....+.+|...|.+++|+|++++|++++.|+.|++||+..         ...+..+.   ....+.+++|+|++.
T Consensus       183 ~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~---------~~~~~~~~---~~~~v~~~~~sp~~~  250 (319)
T 3frx_A          183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA---------KKAMYTLS---AQDEVFSLAFSPNRY  250 (319)
T ss_dssp             TTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------TEEEEEEE---CCSCEEEEEECSSSS
T ss_pred             CCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CcEEEEec---CCCcEEEEEEcCCCC
Confidence            999999999999999999999999999999999999999999983         33444443   234678899999999


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeEEEEecCC-------CCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLVKILHGTK-------GELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +|++++.  ..+++|++..+..+..+..+.       ...+.+++|+|+|++|++++ ||.|+||++.
T Consensus       251 ~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          251 WLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            9998884  469999999888777765431       22389999999999999999 9999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-41  Score=333.12  Aligned_cols=285  Identities=16%  Similarity=0.289  Sum_probs=252.8

Q ss_pred             hhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC
Q psy2110          76 QDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT  154 (622)
Q Consensus        76 ~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~  154 (622)
                      ..+.+| ..+.+++|+|++++|++++.| ++|++||..+++....+..|...+                 .+++|+|++.
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v-----------------~~~~~sp~g~  119 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWV-----------------MACAYAPSGC  119 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCC-----------------CEEEECTTSS
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCE-----------------EEEEECCCCC
Confidence            334444 457899999999999999975 999999999999999999998877                 5999999999


Q ss_pred             EEEEeeCCCcEEEEecCCccc------ccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGI------AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      +|++|+.|+.+++|++.....      ...+..|.           ..|.+++|+|+++.|++++.|++|++||+.+++.
T Consensus       120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~  188 (354)
T 2pbi_B          120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-----------NYLSACSFTNSDMQILTASGDGTCALWDVESGQL  188 (354)
T ss_dssp             EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS-----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeeCCCCEEEEEEeccccccccccceeeeccC-----------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence            999999999999999865421      12222222           4589999999999999999999999999999999


Q ss_pred             EEEeccCCcCeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         229 AKIISAHMHPVCSISWSR--NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      +..+.+|...|.+++|+|  ++++|++++.||.|++||+++++++..+. |...|.+++|+|++. ++++++.|+.+++|
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lw  267 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLY  267 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence            999999999999999987  57899999999999999999999998887 788999999999886 68899999999999


Q ss_pred             EecCCceeecccCC--CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         306 DTDGDHQIVPIDED--SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       306 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      |++....+..+..+  ...+.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|...|++++|+|+|++|++++.|
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            99987766555433  3467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEe
Q psy2110         384 RLIRVYN  390 (622)
Q Consensus       384 ~~i~i~d  390 (622)
                      +.|++|+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-41  Score=326.38  Aligned_cols=292  Identities=14%  Similarity=0.172  Sum_probs=251.6

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      +..+++.+|.+.|                 ++++|+|++++|++++.||+|++||+.++..+..+..+.           
T Consensus         4 ~~~~~~~~h~~~V-----------------~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~-----------   55 (304)
T 2ynn_A            4 DIKKTFSNRSDRV-----------------KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-----------   55 (304)
T ss_dssp             CCEEEEEEECSCE-----------------EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------
T ss_pred             eeEEeecCCCCce-----------------EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC-----------
Confidence            4567788999988                 599999999999999999999999999988887777664           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQK  273 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~  273 (622)
                      ..|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. ....
T Consensus        56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~  135 (304)
T 2ynn_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (304)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh
Confidence            348999999999999999999999999999999999999999999999999999999999999999999999874 4455


Q ss_pred             Ee-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-CCCCceEEEEEee--CCCEEEEEecCCeEEEEeC
Q psy2110         274 YR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDR--RGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       274 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~  349 (622)
                      +. |...|.+++|+|.+..++++++.|+.+++||++.......+. .+...+..+.++|  ++.+|++|+.|+.|++||+
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~  215 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY  215 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence            55 788999999999776789999999999999998765554443 4557788888876  6789999999999999999


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC-
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE-  428 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-  428 (622)
                      ++++++..+.+|...|.+++|+|++++|++++.|+.|++||+.         ..+.+..+..+  ...+.+++|+|+++ 
T Consensus       216 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          216 QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---------TYKVEKTLNVG--LERSWCIATHPTGRK  284 (304)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---------TCCEEEEECCS--SSSEEEEEECTTCGG
T ss_pred             CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---------CCceeeeccCC--CccEEEEEECCCCCc
Confidence            9999999999999999999999999999999999999999998         33445555433  23456889999885 


Q ss_pred             -eEEEeeCCCCeEEEEECCC
Q psy2110         429 -YVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       429 -~l~~~~~~d~~i~iwd~~~  447 (622)
                       ++++|+. + .+.+|++..
T Consensus       285 ~~~asg~~-~-g~~~~~~~~  302 (304)
T 2ynn_A          285 NYIASGFD-N-GFTVLSLGN  302 (304)
T ss_dssp             GCEEEEET-T-EEEEEECC-
T ss_pred             eEEEEecC-C-ceEEEEecc
Confidence             5777763 4 577888754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-42  Score=348.13  Aligned_cols=340  Identities=14%  Similarity=0.197  Sum_probs=281.4

Q ss_pred             hhhhhhccccceeEEEEcCCCC-EEEEecCCCCeEEEEEc----CCCc------eEEEEec----------cCcceeEEE
Q psy2110          73 QKLQDLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEK----SVGN------LVKILHG----------TKGELLLDV  131 (622)
Q Consensus        73 ~~~~~~~~~~~~~~~~~sp~~~-~l~~~~~~~~~i~vwd~----~~~~------~~~~~~~----------~~~~v~~~~  131 (622)
                      +.+....+...+.+++|+|+++ +|++++.+ +.|++|++    .+++      ....+..          |.+.+    
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----  111 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV----  111 (425)
T ss_dssp             EECEEEEECSCCSEEEECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE----
T ss_pred             hheeeeeccCceEEEEECCCCCcEEEEecCC-ceEEEEEEecccCCccccccccccccccccccccccccCCCCce----
Confidence            3344445556788999999999 99999975 99999999    8888      4554444          44444    


Q ss_pred             EeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEE
Q psy2110         132 VEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV  211 (622)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  211 (622)
                                   ++++|+|++++|++++.||.|++|+ .+++....+..|.           ..|.+++|+|++++|++
T Consensus       112 -------------~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~  166 (425)
T 1r5m_A          112 -------------TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR-----------APIVSVKWNKDGTHIIS  166 (425)
T ss_dssp             -------------EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC-----------SCEEEEEECTTSSEEEE
T ss_pred             -------------EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC-----------ccEEEEEECCCCCEEEE
Confidence                         6999999999999999999999999 5666666666554           35899999999999999


Q ss_pred             EeCCCeEEEEEcCCCceEEEeccCCcC---------------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-
Q psy2110         212 GCNDGRIVLWDFLTRGIAKIISAHMHP---------------VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-  275 (622)
Q Consensus       212 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  275 (622)
                      ++.++.|++||+.+++.+..+..+...               +.+++|++++ .+++++.++.|++||+.+++....+. 
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~  245 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG  245 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc
Confidence            999999999999999999988888777               9999999875 68899999999999999998887776 


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      +...+.+++|+|+++ ++++++.++.+++||++.......+..|...+.+++|+|++ ++++++.+|.|++||+++++.+
T Consensus       246 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~  323 (425)
T 1r5m_A          246 HHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL  323 (425)
T ss_dssp             CSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence            788999999999987 67888899999999999988888888899999999999999 9999999999999999999999


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCC-----------CCCCcceeeeccccceeeeeEEEc
Q psy2110         356 ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD-----------GDPEPIQKLQDLVNKTMWKKCCFS  424 (622)
Q Consensus       356 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~s  424 (622)
                      ..+..|...|.+++|+|++++|++++.|+.|++|++.........           .....+..+..+.....+.+++|+
T Consensus       324 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  403 (425)
T 1r5m_A          324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN  403 (425)
T ss_dssp             EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred             EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence            999999999999999999999999999999999999853310000           000134444433222278899999


Q ss_pred             CCCCeEEEeeCCCCeEEEEECC
Q psy2110         425 GDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       425 pdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      |++++|++++. |+.|++|++.
T Consensus       404 ~~~~~l~~~~~-dg~i~iw~~~  424 (425)
T 1r5m_A          404 CAGNKISVAYS-LQEGSVVAIP  424 (425)
T ss_dssp             TTSSEEEEEES-SSCCEEEECC
T ss_pred             CCCceEEEEec-CceEEEEeec
Confidence            99999999997 9999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-42  Score=341.19  Aligned_cols=308  Identities=13%  Similarity=0.167  Sum_probs=239.7

Q ss_pred             eecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCC-----CCeEEEEEcCCCce---
Q psy2110          45 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR-----QHALYIWEKSVGNL---  116 (622)
Q Consensus        45 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~-----~~~i~vwd~~~~~~---  116 (622)
                      .++.+.....|++....               ...+...+.+++|||||++||+++.+     |+.|++|+..++..   
T Consensus        21 ~~~g~~~~~~w~~p~~~---------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~   85 (357)
T 4g56_B           21 QSNGSSKGSAWGRPVTA---------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES   85 (357)
T ss_dssp             ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred             ecCCCccccccCCCCCC---------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence            44556667788764211               11355678899999999999999863     47899998876643   


Q ss_pred             -EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccccc
Q psy2110         117 -VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       117 -~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                       .....+|...|                 ++++|+|++. +++++.||+|+|||+.+++...........       ...
T Consensus        86 ~~~~~~~~~~~V-----------------~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-------h~~  140 (357)
T 4g56_B           86 LCTAGVQTEAGV-----------------TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYE-------HDD  140 (357)
T ss_dssp             GCSEEEECSSCE-----------------EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECC-------CSS
T ss_pred             EecccCCCCCCE-----------------EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCC-------CCC
Confidence             23445666666                 5999999986 556788999999999987655433221110       114


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      .|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|++++|++++. ++++++.|+.|++||+++++....+
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~  220 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI  220 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee
Confidence            689999999999999999999999999999999999999999999999999875 7899999999999999998877665


Q ss_pred             e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCC
Q psy2110         275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~  350 (622)
                      .   +...+.+++|+|++..++++++.++.|++||+++...+..+..|...+.+++|+|++ ++|++|+.|++|+|||++
T Consensus       221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence            4   556799999999988899999999999999999999999999999999999999987 578999999999999999


Q ss_pred             CccEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeccc
Q psy2110         351 ALELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       351 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      +++++..+ +|...|++++|+| ++++|++++.|++|++|++..
T Consensus       301 ~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          301 FSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             SCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            98877654 7999999999998 799999999999999999973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-41  Score=326.95  Aligned_cols=282  Identities=13%  Similarity=0.191  Sum_probs=253.1

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...+.+++|+|++++|++++.| +.|++||+.+++.+..+.+|...+                 .+++|+|++++|++|+
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPV-----------------RAGKFIARKNWIIVGS   74 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEEEGGGTEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcE-----------------EEEEEeCCCCEEEEEC
Confidence            3457899999999999999975 999999999999999999999988                 5999999999999999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcCe
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPV  239 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v  239 (622)
                      .|++|++||+.+++.+..+..|.           ..|.+++|+|++++|++|+.|+.|++||+.++ .....+.+|...|
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v  143 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHP-----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence            99999999999998888887775           35899999999999999999999999999887 4557788999999


Q ss_pred             eEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCC-CCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         240 CSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPR-NDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       240 ~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      .+++|+| ++.+|++|+.|++|++||+.++.....+.  +...+..+.|+|. ...++++++.|+.|++||+++...+..
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence            9999999 67899999999999999998877655554  5578999999884 334789999999999999999999999


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecc
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN--CLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~i~i~d~~  392 (622)
                      +..|...+.+++|+|++++|++|+.||.|++||+.+++++..+..|...+.+++|+|++.  ++++++. ..+.+|++.
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~  301 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGFTVLSLG  301 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET-TEEEEEECC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC-CceEEEEec
Confidence            999999999999999999999999999999999999999999999999999999999885  4666665 456777765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-41  Score=333.47  Aligned_cols=320  Identities=16%  Similarity=0.273  Sum_probs=271.9

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK   81 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (622)
                      +.|.+++|||||+++|++..++.+.+|....                                      ....+....+.
T Consensus        10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~h~   51 (337)
T 1gxr_A           10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR--------------------------------------HARQINTLNHG   51 (337)
T ss_dssp             EECCEEEECSSSCEEECCCCTTSSSSTTCCS--------------------------------------EEEEEEEECCS
T ss_pred             CceeEEEECCCCCEEEeecCCCcEeccccCC--------------------------------------ccccceeccCC
Confidence            4689999999999999888777665554211                                      11111222345


Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce---EEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL---VKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      ..+.+++|+|++++|++++ + +.|++|++.+++.   +..+.  +|...+                 ++++|+|++++|
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l  112 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYI-----------------RSCKLLPDGCTL  112 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBE-----------------EEEEECTTSSEE
T ss_pred             CceEEEEEecCCcEEEEcC-C-CeEEEEECCCCCceeeeecccccCCCCcE-----------------EEEEEcCCCCEE
Confidence            5677999999999999998 4 9999999987653   33333  677766                 599999999999


Q ss_pred             EEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         157 AVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                      ++++.||.|++|++.+++  ....+..+.           ..+.+++|+|++++|++++.++.|++||+.+++....+..
T Consensus       113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          113 IVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEcCCCcEEEEECCCCCcceeeecccCC-----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence            999999999999998876  333333332           3589999999999999999999999999999999999999


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  314 (622)
                      |...|.+++|+|++++|++++.|+.|++||+++++....+.+...+.+++|+|+++ ++++++.++.+++||+++... .
T Consensus       182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~  259 (337)
T 1gxr_A          182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-Y  259 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-E
T ss_pred             ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-E
Confidence            99999999999999999999999999999999999999999999999999999987 577888899999999988764 4


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+..|...+.+++|+|+++++++++.+|.|++|++.+++.+.. ..|...|.+++|+|++++|++++.|+.|++|++.
T Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            5677889999999999999999999999999999999988754 4577899999999999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.9e-42  Score=335.32  Aligned_cols=296  Identities=15%  Similarity=0.155  Sum_probs=238.1

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ...+.+++|||||++|++++ + +++++||............+.......      ...+...|.+++|+|++ .|++|+
T Consensus        30 ~~~v~~~~fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~-~l~~~s  100 (344)
T 4gqb_B           30 ERQLEAARYRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSA------GVQTEAGVADLTWVGER-GILVAS  100 (344)
T ss_dssp             CSEEEEEEECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSE------EEEESSCEEEEEEETTT-EEEEEE
T ss_pred             cCCEEEEEECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeee------eeccCCCEEEEEEeCCC-eEEEEE
Confidence            34577999999999999888 3 678888732100000000111110000      01112234799999985 688999


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      .||+|+|||+.+++....+......       +...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|+
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~-------H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYE-------HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEEC-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCEEEEEeccCCCceeEeeccccC-------CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            9999999999998766544321110       014589999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         241 SISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       241 ~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +++|++++. +|++++.|++|++||+++++....+.   +...+.+++|+|++..++++++.|+.|++||+++.+.+..+
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~  253 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS  253 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE
Confidence            999999874 78999999999999999999888775   44578999999998889999999999999999999999999


Q ss_pred             cCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeccc
Q psy2110         317 DEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~  393 (622)
                      ..|...|.+++|+|++ ++|++|+.|++|++||+.+++++ .+.+|...|++++|+|+++ +|++++.|++|++|++..
T Consensus       254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            9999999999999998 57999999999999999988765 5789999999999999986 566889999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=333.41  Aligned_cols=290  Identities=15%  Similarity=0.183  Sum_probs=231.3

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .+++|+|||++|++++ |+++++||............+..............|.+++|+|++ .|++|+.||.|++||+.
T Consensus        34 ~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~  111 (344)
T 4gqb_B           34 EAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELD  111 (344)
T ss_dssp             EEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEecc
Confidence            6999999999999887 778888874322111111111111111112223468999999985 67899999999999999


Q ss_pred             CCceEEE----eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         225 TRGIAKI----ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       225 ~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      +++....    +.+|.+.|++++|+|+|++|++|+.|++|++||+.+++++..+. |...|.+++|+|++..++++++.|
T Consensus       112 ~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          112 ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccc
Confidence            8875543    45899999999999999999999999999999999999999887 889999999999998899999999


Q ss_pred             CcEEEEEecCCceeeccc--CCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-C
Q psy2110         300 HAAVLVDTDGDHQIVPID--EDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-N  375 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~  375 (622)
                      +.|++||+++.+....+.  .+...+.+++|+|+ ++++++|+.||.|++||+++++++..+.+|...|++++|+|++ +
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSC
T ss_pred             cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCe
Confidence            999999999887766654  45567889999985 5788999999999999999999999999999999999999998 5


Q ss_pred             EEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe-EEEeeCCCCeEEEEECCCCe
Q psy2110         376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY-VCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       376 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~d~~i~iwd~~~~~  449 (622)
                      +|++++.|++|+|||+..         .+ +..+..  +...+.+++|+|++++ |++++. |++|++|++.+..
T Consensus       272 ~lasgs~D~~i~vwd~~~---------~~-~~~~~~--H~~~V~~v~~sp~~~~llas~s~-D~~v~~w~v~~~~  333 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSL---------SE-LFRSQA--HRDFVRDATWSPLNHSLLTTVGW-DHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEEETTSCEEEECTTC---------CE-EEEECC--CSSCEEEEEECSSSTTEEEEEET-TSCEEEEECCC--
T ss_pred             EEEEEeCCCeEEEEECCC---------Cc-EEEEcC--CCCCEEEEEEeCCCCeEEEEEcC-CCeEEEEECCCCC
Confidence            789999999999999873         12 223333  3456789999999975 556776 9999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.2e-42  Score=348.65  Aligned_cols=340  Identities=13%  Similarity=0.168  Sum_probs=281.7

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      .+++|+|++++|++++.+ +.|++||+.+++....+..| ..+                 ....|+|++++|++|+.||.
T Consensus        60 ~~~~~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~l~~~~~dg~  120 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRA-DYT-----------------AVDTAKLQMRRFILGTTEGD  120 (420)
T ss_dssp             TTCEEEEEETTEEEEEET-TEEEEEECCSEETTTTSCSC-CEE-----------------EEEEECSSSCEEEEEETTSC
T ss_pred             cceeeeecCCeEEEEEcC-CcEEEEEecccceeeEEecC-Cce-----------------EEEEEecCCCEEEEEECCCC
Confidence            468999999999999986 99999999988776666665 222                 36678999999999999999


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW  244 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  244 (622)
                      |++||+.+++....+..|.           ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|
T Consensus       121 i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          121 IKVLDSNFNLQREIDQAHV-----------SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             EEEECTTSCEEEEETTSSS-----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             EEEEeCCCcceeeeccccc-----------CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            9999999888777666654           35899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110         245 SRNGYKIISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS  320 (622)
Q Consensus       245 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  320 (622)
                      +|++++|++++.|+.|++||+++++.+..+.    +...+.++++.|.+...                      ....+.
T Consensus       190 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~~  247 (420)
T 3vl1_A          190 IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------------------LHEIST  247 (420)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------------------CGGGCC
T ss_pred             cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------------------eeeccc
Confidence            9999999999999999999999999998886    55788888888765432                      122345


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecccccccC
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQEVLNAG  398 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~  398 (622)
                      ..+.+++|+|++++|++++.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.|+.|++||++.     
T Consensus       248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-----  322 (420)
T 3vl1_A          248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-----  322 (420)
T ss_dssp             CCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-----
T ss_pred             CcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-----
Confidence            567788999999999999999999999999998877765 5788999999999999 999999999999999983     


Q ss_pred             CCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC---------eeEEEEecCCCCceeEEEECC
Q psy2110         399 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG---------NLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~v~~v~~sp  469 (622)
                         ...++..+..+. ...+.++ +++++++|++++. |+.|++|++...         .....+.+|.+. |.+++|+|
T Consensus       323 ---~~~~~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~  395 (420)
T 3vl1_A          323 ---PECPVGEFLINE-GTPINNV-YFAAGALFVSSGF-DTSIKLDIISDPESERPAIEFETPTFLVSNDDA-VSQFCYVS  395 (420)
T ss_dssp             ---TTSCSEEEEEST-TSCEEEE-EEETTEEEEEETT-TEEEEEEEECCTTCCSCEECTTSCEEECCSSCC-CCEEEEEC
T ss_pred             ---CcCchhhhhccC-CCCceEE-EeCCCCEEEEecC-CccEEEEeccCCCCCccceeccCccEEccCCcc-eEEEEEcc
Confidence               112344554332 2344555 5568889999997 999999998763         222345566666 99999999


Q ss_pred             CCC---EEEEEe-CCcEEEeecC
Q psy2110         470 VRP---IIASIS-SGVVSLWAQN  488 (622)
Q Consensus       470 ~~~---~l~s~~-dg~v~iw~~~  488 (622)
                      +++   .|++++ +|.+.+|++.
T Consensus       396 ~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          396 DDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CSSSSCEEEEEETTTEEEEEESC
T ss_pred             CCCCcceEEEEcCCceEEEEecc
Confidence            999   555555 9999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-43  Score=354.92  Aligned_cols=357  Identities=16%  Similarity=0.198  Sum_probs=277.3

Q ss_pred             ceeEEEEcCCCC-EEEEe----------cCCCCeEEEEEcCCCce---EEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          83 MWKKCCFSGDGE-YVCAG----------SARQHALYIWEKSVGNL---VKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        83 ~~~~~~~sp~~~-~l~~~----------~~~~~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      .+.+++|+|+++ +|+++          +. ++.|++||+.+++.   +..+ .|...+                 ++++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~-d~~v~iw~~~~~~~~~~~~~~-~~~~~v-----------------~~~~   74 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFST-DSSLELWSLLAADSEKPIASL-QVDSKF-----------------NDLD   74 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCC-CCCCEEEESSSGGGCSCSCCC-CCSSCE-----------------EEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCC-CCeEEEEEccCCCCCcEEEEE-ecCCce-----------------EEEE
Confidence            456799999998 88888          54 48999999988763   3333 466666                 6999


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCC----cccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEc
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLT----RGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~  223 (622)
                      |+|++++|++++.||.|++|++.+    ......+..|.           ..|.+++|+|+ +++|++++.|+.|++||+
T Consensus        75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS-----------SSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS-----------SCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc-----------cceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            999999999999999999999987    23555555544           35889999998 899999999999999999


Q ss_pred             CCCc------eEE---EeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CCCeEEEEEe
Q psy2110         224 LTRG------IAK---IISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGECEQKYRF-------PSPILKVQFH  286 (622)
Q Consensus       224 ~~~~------~~~---~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~  286 (622)
                      .+++      ...   .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..       ...+.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            9876      332   34679999999999998 78999999999999999999999888874       6789999999


Q ss_pred             CCCCeEEEEeeCCC---cEEEEEecCC-ceeeccc-CCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110         287 PRNDHMFLVCPMRH---AAVLVDTDGD-HQIVPID-EDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       287 ~~~~~~~~~~~~~~---~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      |++..++++++.++   .+++||+++. .....+. .|...+.+++|+| ++++|++++.||.|++||+++++++..+..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            99988899999998   9999999986 5666777 7999999999999 899999999999999999999999999999


Q ss_pred             CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110         361 STTAIKSIEFARRG-NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA  439 (622)
Q Consensus       361 ~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~  439 (622)
                      |...|.+++|+|++ .+|++++.|+.|++|++......         ................|.+.+..++.++. .+.
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  373 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT---------LDEQETETKQQESETDFWNNVSREESKEK-PSV  373 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS---------SCC----------------------CCSC-CCS
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC---------cccccccccccCCcccccccccccccccc-ccc
Confidence            99999999999999 89999999999999999842211         11100000111122344444444443332 221


Q ss_pred             EEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         440 LYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       440 i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      +   .+      .....|.. ++.+++|+|+|++|++++ |+.|+||++..
T Consensus       374 ~---~~------~~~~~~~~-~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          374 F---HL------QAPTWYGE-PSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             S---CC------CCCSTTCC-CSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             c---cc------cCCccccC-CccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            1   11      11122343 388999999999999999 99999999853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.4e-41  Score=331.19  Aligned_cols=299  Identities=14%  Similarity=0.281  Sum_probs=242.1

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEE-----cC-CCCEEEEeeCCCcEEEEecCCcc-------ccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF-----NK-RGTLLAVGCNDGRIVLWDFLTRG-------IAKIISA  181 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~-----s~-d~~~l~s~~~dg~i~vw~~~~~~-------~~~~~~~  181 (622)
                      +....+.+|.+.|                 ++++|     ++ ++++|++|+.|++|++|++...+       ....+..
T Consensus        12 ~~~~~l~gH~~~V-----------------~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~   74 (343)
T 2xzm_R           12 VKRGILEGHSDWV-----------------TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG   74 (343)
T ss_dssp             EEEEEEECCSSCE-----------------EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC
T ss_pred             eeeeeeccchhhh-----------------hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc
Confidence            4567789999988                 59999     76 89999999999999999997643       2233334


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC  261 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~  261 (622)
                      |.           ..|.+++|+|++.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus        75 h~-----------~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~  143 (343)
T 2xzm_R           75 HN-----------HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIK  143 (343)
T ss_dssp             CS-----------SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEE
T ss_pred             CC-----------CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEE
Confidence            43           3589999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEE---eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE
Q psy2110         262 IWDVLTGECEQKY---RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG  338 (622)
Q Consensus       262 iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (622)
                      +||+.........   .+...+.+++|+|++...                                 ..+.|.+.+++++
T Consensus       144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------------~~~~~~~~~l~s~  190 (343)
T 2xzm_R          144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA---------------------------------NKVQPFAPYFASV  190 (343)
T ss_dssp             EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC---------------------------------SCCCSSCCEEEEE
T ss_pred             EEeccCCceeeeecccCCCceeeeeeeccccccc---------------------------------cccCCCCCEEEEE
Confidence            9999843332222   255678888888865310                                 0123556899999


Q ss_pred             ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceee
Q psy2110         339 NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW  418 (622)
Q Consensus       339 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (622)
                      +.||.|++|| .+.+....+..|...|.+++|+|+|++|++++.|+.|++||+..        .......+.   ....+
T Consensus       191 ~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~--------~~~~~~~~~---~~~~v  258 (343)
T 2xzm_R          191 GWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN--------LTYPQREFD---AGSTI  258 (343)
T ss_dssp             ETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC--------CSSCSEEEE---CSSCE
T ss_pred             cCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC--------Ccccceeec---CCCcE
Confidence            9999999999 45677888999999999999999999999999999999999852        112222221   22347


Q ss_pred             eeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEE--EEe-----------cCCCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110         419 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK--ILH-----------GTKGELLLDVVWHPVRPIIASIS-SGVVSL  484 (622)
Q Consensus       419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~--~~~-----------~~~~~~v~~v~~sp~~~~l~s~~-dg~v~i  484 (622)
                      .+++|+|++++++++.  |+.|++|++.+++...  .+.           +|... |.+++|+|++++|++++ ||+|++
T Consensus       259 ~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          259 NQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-CTSLAWNALGKKLFAGFTDGVIRT  335 (343)
T ss_dssp             EEEEECSSSCEEEEEE--SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-EEEEEECSSSCCEEEEETTSEEEE
T ss_pred             EEEEECCCCCEEEEEC--CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-eEEEEECCCCCeEEEecCCceEEE
Confidence            8899999999887665  6679999998876543  443           55555 99999999999999999 999999


Q ss_pred             eecCC
Q psy2110         485 WAQNQ  489 (622)
Q Consensus       485 w~~~~  489 (622)
                      |++..
T Consensus       336 w~~~~  340 (343)
T 2xzm_R          336 FSFET  340 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-42  Score=345.53  Aligned_cols=305  Identities=14%  Similarity=0.249  Sum_probs=259.8

Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  243 (622)
                      .+..|+.....+...+.+|.           ..|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++
T Consensus        47 ~~~~~~~~~~~~~~~l~gH~-----------~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~  115 (380)
T 3iz6_a           47 TAVSFNPTDLVCCRTLQGHS-----------GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA  115 (380)
T ss_dssp             GCCCCCCCCCEEEEEECCCS-----------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCE
T ss_pred             cccccccceeEEeecccccc-----------cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEE
Confidence            34456655555666677765           3599999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTGE-------CEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      |+|+|++|++++.|+.+++||+.+..       ....+. |...+.++.|+|++...+++++.|+.+++||+.++..+..
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence            99999999999999999999987532       122233 7788999999998887899999999999999998877765


Q ss_pred             c-----cCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         316 I-----DEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       316 ~-----~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      +     ..|...+.++++++ ++.++++|+.|+.|++||++ ..+.+..+.+|...|++++|+|++++|++++.|++|++
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l  275 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL  275 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence            5     56888899999977 88999999999999999998 55788889999999999999999999999999999999


Q ss_pred             EecccccccCCCCCCCcceeeecccc-----ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE----ecCCC
Q psy2110         389 YNHQEVLNAGKDGDPEPIQKLQDLVN-----KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL----HGTKG  459 (622)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~  459 (622)
                      ||++.         ...+..+.....     ...+.+++|+|+|++|++|+. |+.|++||+.+++.+..+    .+|.+
T Consensus       276 wd~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          276 FDMRT---------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             EETTT---------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             EECCC---------CcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCC
Confidence            99983         223333322111     123678999999999999997 999999999999988877    56776


Q ss_pred             CceeEEEECCCCCEEEEEe-CCcEEEeecCCc
Q psy2110         460 ELLLDVVWHPVRPIIASIS-SGVVSLWAQNQV  490 (622)
Q Consensus       460 ~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~  490 (622)
                      . |++++|+|++++|++++ ||+|++|++.+.
T Consensus       346 ~-v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          346 R-ISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             C-CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             c-eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            6 99999999999999999 999999998653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-41  Score=336.41  Aligned_cols=319  Identities=15%  Similarity=0.217  Sum_probs=234.3

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-----
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-----  161 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-----  161 (622)
                      +.+.+++.++.+.+  +.....|++....    ..+|...|                 ++++|+|||++||+|+.     
T Consensus        11 ~d~g~~~~~~~~~g--~~~~~~w~~p~~~----p~~H~~~V-----------------~~v~fSpDG~~las~s~d~~~~   67 (357)
T 4g56_B           11 VDLGTENLYFQSNG--SSKGSAWGRPVTA----PACMEVQI-----------------GAVRYRRDGALLLAASSLSSRT   67 (357)
T ss_dssp             -----------------------------------CCCSEE-----------------EEEEECSSSCEEEEEECSSSSS
T ss_pred             CCCCccceEEecCC--CccccccCCCCCC----cccccCCE-----------------EEEEECCCCCEEEEEcCCCCcc
Confidence            55666666665554  2577889875433    35788887                 59999999999999997     


Q ss_pred             -CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE----EeccCC
Q psy2110         162 -DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHM  236 (622)
Q Consensus       162 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~  236 (622)
                       |+.|++|+..++.....+.....       .....|.+++|+|++++| +++.||.|++||+.+++...    ...+|.
T Consensus        68 wd~~v~~~~~~~~~~~~~~~~~~~-------~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~  139 (357)
T 4g56_B           68 WGGSIWVFKDPEGAPNESLCTAGV-------QTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHD  139 (357)
T ss_dssp             CCEEEEEESSCC---CGGGCSEEE-------ECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCS
T ss_pred             ccCeEEEEECCCCCcceeEecccC-------CCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCC
Confidence             77899999887755444322111       111458999999998654 67789999999998876542    345799


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      ..|++++|+|++++|++++.|+.|++||+++++++..+. |...|.+++|+|++..++++++.|+.+++||+++......
T Consensus       140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~  219 (357)
T 4g56_B          140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR  219 (357)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred             CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence            999999999999999999999999999999999999887 7889999999999988899999999999999998766554


Q ss_pred             c--cCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEec
Q psy2110         316 I--DEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG-NCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       316 ~--~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~i~d~  391 (622)
                      +  ..+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...|++++|+|++ ++|++++.|++|+|||+
T Consensus       220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            4  456677899999997 4688999999999999999999999999999999999999987 57899999999999998


Q ss_pred             ccccccCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         392 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                      +.         .+.+..+   .+...+.+++|+| ++++|++++. |++|++|++.+..
T Consensus       300 ~~---------~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~-Dg~v~iW~~~~~~  345 (357)
T 4g56_B          300 DF---------SEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW-DHKVLHHHLPSEG  345 (357)
T ss_dssp             TS---------CEEEEEC---CCSSCEEEEEECSSSTTEEEEEET-TSCEEEEECC---
T ss_pred             CC---------CcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC-CCeEEEEECCCCC
Confidence            73         2233222   2445678999999 8999999997 9999999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-40  Score=320.25  Aligned_cols=294  Identities=23%  Similarity=0.402  Sum_probs=249.7

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      ......+.+|...|                 ++++|+|++++|++++.||.|++|++.+++....+..|.          
T Consensus        13 ~~~~~~~~gh~~~v-----------------~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~----------   65 (312)
T 4ery_A           13 YALKFTLAGHTKAV-----------------SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK----------   65 (312)
T ss_dssp             CEEEEEECCCSSCE-----------------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS----------
T ss_pred             ceeEEEEcccCCcE-----------------EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC----------
Confidence            34566788999888                 599999999999999999999999999988877776664          


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                       ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus        66 -~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 -LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             -CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence             3489999999999999999999999999999999999999999999999999999999999999999999998776555


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +.                                          .|...+.+++|+|+++++++++.||.|++||+++++
T Consensus       145 ~~------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          145 LP------------------------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             EC------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ec------------------------------------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            43                                          123345566777777888889999999999999888


Q ss_pred             EEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc-CCCCeEE
Q psy2110         354 LKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS-GDGEYVC  431 (622)
Q Consensus       354 ~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~  431 (622)
                      .+..+. .+...+..++|+|++++|++++.|+.|++||+..         ...+..+..+..........++ +++++|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (312)
T 4ery_A          183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---------GKCLKTYTGHKNEKYCIFANFSVTGGKWIV  253 (312)
T ss_dssp             EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred             eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC---------CcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence            877664 5567899999999999999999999999999983         3445555544443333333444 6788999


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe---CCcEEEeecC
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS---SGVVSLWAQN  488 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~---dg~v~iw~~~  488 (622)
                      +++. |+.|++||+.+++.+..+.+|.+. |.+++|+|++++|++++   |++|++|+.+
T Consensus       254 sg~~-dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          254 SGSE-DNLVYIWNLQTKEIVQKLQGHTDV-VISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECCT-TSCEEEEETTTCCEEEEECCCSSC-EEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EECC-CCEEEEEECCCchhhhhhhccCCc-EEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9997 999999999999999999999876 99999999999999885   8999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.9e-42  Score=343.45  Aligned_cols=308  Identities=19%  Similarity=0.316  Sum_probs=264.5

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  183 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  183 (622)
                      ..+..|+.....+.+.+.+|.+.|                 ++++|+|++++|++|+.||+|+|||+.+++....+..|.
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V-----------------~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~  108 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKV-----------------YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC  108 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCE-----------------EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC
T ss_pred             ccccccccceeEEeecccccccEE-----------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC
Confidence            345567777788889999999999                 599999999999999999999999999988887777665


Q ss_pred             CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------eEEEeccCCcCeeEEEEcCC-CCEEEEEe
Q psy2110         184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------IAKIISAHMHPVCSISWSRN-GYKIISAS  255 (622)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~-~~~l~s~~  255 (622)
                      .           .|.+++|+|+|++|++|+.|+.+++|++.+..       ....+.+|.+.|.++.|+|+ +..|++++
T Consensus       109 ~-----------~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s  177 (380)
T 3iz6_a          109 P-----------WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS  177 (380)
T ss_dssp             T-----------TCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred             C-----------CEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC
Confidence            3           47889999999999999999999999987532       34567899999999999996 45799999


Q ss_pred             CCCcEEEEECCCCcEEEEEe------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCCCceEEEEE
Q psy2110         256 TDNNVCIWDVLTGECEQKYR------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVASF  328 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~  328 (622)
                      .|++|++||+.+++.+..+.      |...+.+++|++.+..++++++.|+.+++||++ ....+..+..|...|.+++|
T Consensus       178 ~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~  257 (380)
T 3iz6_a          178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF  257 (380)
T ss_dssp             TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred             CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence            99999999999999988772      667899999998666789999999999999998 45677788899999999999


Q ss_pred             eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC
Q psy2110         329 DRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-------TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  401 (622)
                      +|++++|++|+.||+|++||+++++.+..+..+.       ..|++++|+|+|++|++++.|+.|++||+..        
T Consensus       258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~--------  329 (380)
T 3iz6_a          258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL--------  329 (380)
T ss_dssp             CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT--------
T ss_pred             ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC--------
Confidence            9999999999999999999999999988876543       2489999999999999999999999999872        


Q ss_pred             CCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         402 DPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       402 ~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                       ...+..+..  ..+...+.+++|+|+|++|++|+. |+.|+||++...+
T Consensus       330 -~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~~~~  377 (380)
T 3iz6_a          330 -AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW-DKNLKIWAFSGHR  377 (380)
T ss_dssp             -CCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT-TSCEEEEECCSSS
T ss_pred             -CceEEEEecccCCCCCceEEEEECCCCCEEEEeeC-CCCEEEEecCCCc
Confidence             233333322  123356788999999999999997 9999999987653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.6e-41  Score=344.04  Aligned_cols=321  Identities=12%  Similarity=0.119  Sum_probs=268.9

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcccc
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT   82 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (622)
                      .+++++|+|+|++|++|+.||.|++||..+.+..                                       ..+..+.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------------------~~~~~~~   98 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------------------KMLKRAD   98 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------------------TTSCSCC
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------------------eEEecCC
Confidence            4568999999999999999999999996443221                                       1111222


Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      ......|+|++++|++++.+ +.|++||+.+++....+.+|...|                 ++++|+|++++|++++.|
T Consensus        99 ~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~s~d  160 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSEI-----------------TKLKFFPSGEALISSSQD  160 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSCE-----------------EEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCcc-----------------EEEEECCCCCEEEEEeCC
Confidence            23345899999999999975 999999999999999889999988                 599999999999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc---CCcC-
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHP-  238 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~-  238 (622)
                      +.|++||+.+++....+..|.           ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..   |... 
T Consensus       161 ~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          161 MQLKIWSVKDGSNPRTLIGHR-----------ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             SEEEEEETTTCCCCEEEECCS-----------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             CeEEEEeCCCCcCceEEcCCC-----------CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            999999999998888777665           3589999999999999999999999999999998888875   3334 


Q ss_pred             --------------------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEe
Q psy2110         239 --------------------VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       239 --------------------v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~  296 (622)
                                          +.+++|+|++++|++++.||.|++||+++++....+.  +...+.+++|+|++..+++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                                4445557899999999999999999999998887775  668899999999998789999


Q ss_pred             eCCCcEEEEEecCCce-eecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc---------cEEEEEecCCCCE
Q psy2110         297 PMRHAAVLVDTDGDHQ-IVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL---------ELKASFKASTTAI  365 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i  365 (622)
                      +.++.+++||+++... +..+.. +...+.++ +.+++++|++++.||.|++|++...         .....+..|...|
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v  388 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV  388 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce
Confidence            9999999999988643 555555 56666666 5568889999999999999998763         2233456788999


Q ss_pred             EEEEEcCCCC---EEEEEeCCCcEEEEecc
Q psy2110         366 KSIEFARRGN---CLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       366 ~~~~~s~~~~---~l~~~~~d~~i~i~d~~  392 (622)
                      .+++|+|+++   .+++++.+|.+.+|++.
T Consensus       389 ~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          389 SQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             EEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            9999999999   78888889999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-42  Score=352.72  Aligned_cols=338  Identities=13%  Similarity=0.237  Sum_probs=272.3

Q ss_pred             cceEEEEccCCc-EEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccc
Q psy2110           3 LSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK   81 (622)
Q Consensus         3 ~V~~~~fspdg~-~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (622)
                      .|.+++|||+|+ +||+|+.+|.                 .+++.+.|+.|++|++.....         .+.+..+.+.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~-----------------~~~~~~~d~~v~iw~~~~~~~---------~~~~~~~~~~   67 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGT-----------------VDANFSTDSSLELWSLLAADS---------EKPIASLQVD   67 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSC-----------------CCSSCCCCCCCEEEESSSGGG---------CSCSCCCCCS
T ss_pred             hcceEeeCCCCCCEEEEEecCcc-----------------cccccCCCCeEEEEEccCCCC---------CcEEEEEecC
Confidence            588999999997 9999943332                 122334444555554432110         0122233455


Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCC----CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLL  156 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l  156 (622)
                      ..+.+++|+|++++|++++.+ +.|++|++.+    .+.+..+.+|...+                 ++++|+|+ +++|
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~~l  129 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDN-GSLELYSTNEANNAINSMARFSNHSSSV-----------------KTVKFNAKQDNVL  129 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESS-SCEEEECCSSTTSCCCEEEECCCSSSCC-----------------CEEEECSSSTTBE
T ss_pred             CceEEEEECCCCCeEEEEccC-CeEEEeecccccccccchhhccCCccce-----------------EEEEEcCCCCCEE
Confidence            678899999999999999975 9999999987    45888899999988                 59999998 8999


Q ss_pred             EEeeCCCcEEEEecCCcc------cccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCceE
Q psy2110         157 AVGCNDGRIVLWDFLTRG------IAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIA  229 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~~~  229 (622)
                      ++++.||.|++||+.+++      ....+...        ......|.+++|+|+ +.+|++++.|+.|++||+.+++.+
T Consensus       130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS--------MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS--------CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             EEEcCCCeEEEEECCCCccccccccccccccc--------cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence            999999999999998876      22222100        011145889999999 789999999999999999999998


Q ss_pred             EEeccC------CcCeeEEEEcCCC-CEEEEEeCCC---cEEEEECCCC-cEEEEEe--CCCCeEEEEEeCCCCeEEEEe
Q psy2110         230 KIISAH------MHPVCSISWSRNG-YKIISASTDN---NVCIWDVLTG-ECEQKYR--FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       230 ~~~~~~------~~~v~~~~~s~~~-~~l~s~~~d~---~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      ..+..|      ...|.+++|+|++ .+|++++.|+   .|++||++++ +....+.  |...|.+++|+|++..+++++
T Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred             eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence            888876      7899999999997 6899999998   9999999986 5566665  778999999999545578899


Q ss_pred             eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccEEEEEe----------------
Q psy2110         297 PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASFK----------------  359 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------  359 (622)
                      +.++.+++||+++...+..+..|...+.+++|+|++ .++++++.||.|++|++.+........                
T Consensus       282 ~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (416)
T 2pm9_A          282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNN  361 (416)
T ss_dssp             ESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------------
T ss_pred             eCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccc
Confidence            999999999999999999999999999999999999 899999999999999998765322111                


Q ss_pred             -------------------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         360 -------------------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       360 -------------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                                         .|...+.+++|+|+|++|++++.|+.|+||++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          362 VSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             -----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             ccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                               156778899999999999999999999999987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.1e-40  Score=320.72  Aligned_cols=283  Identities=22%  Similarity=0.396  Sum_probs=255.1

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++|+|++++|++++.+ +.|++|++.+++....+.+|...+                 .+++|+|++++|+++
T Consensus        22 h~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           22 HTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGI-----------------SDVAWSSDSNLLVSA   83 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCce-----------------EEEEEcCCCCEEEEE
Confidence            34567899999999999999975 999999999999999999999988                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      +.|+.|++||+.+++.+..+..|.           ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|
T Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  152 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKCLKTLKGHS-----------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV  152 (312)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCS-----------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             CCCCEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence            999999999999998888777665           358999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      .+++|+|++++|++++.|+.|++||+++++.+..+.  +...+..++|+|+++ ++++++.++.+++||+++...+..+.
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEE
Confidence            999999999999999999999999999999887764  556899999999987 57788899999999999988888777


Q ss_pred             CCCCceE---EEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q psy2110         318 EDSDLSI---VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT--GDRLIRVYNHQ  392 (622)
Q Consensus       318 ~~~~~~~---~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~i~d~~  392 (622)
                      .|.....   .....+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            7665432   223346789999999999999999999999999999999999999999999999987  69999999865

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.2e-40  Score=323.55  Aligned_cols=305  Identities=17%  Similarity=0.250  Sum_probs=244.7

Q ss_pred             ceEEEEeccCc-ceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc---cccccCCCcccc
Q psy2110         115 NLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI---ISAHMHPEFDGA  190 (622)
Q Consensus       115 ~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~  190 (622)
                      +++..+.+|.. .+                 ++++|+|+|++||+|+.|++|+||++.++.....   ...|.       
T Consensus         6 ~~~~~~~~h~~~~v-----------------~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~-------   61 (345)
T 3fm0_A            6 VLLGRVPAHPDSRC-----------------WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ-------   61 (345)
T ss_dssp             EEEEEECCSTTSCE-----------------EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS-------
T ss_pred             EEeeeecCCCCCcE-----------------EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC-------
Confidence            46677888887 66                 5999999999999999999999999987653321   12232       


Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         191 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       191 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                          ..|.+++|+|+|++|++|+.|+.+++|++.++  +++..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus        62 ----~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           62 ----RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             ----SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             ----CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence                35899999999999999999999999999876  456788999999999999999999999999999999999876


Q ss_pred             cE---EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEecCC
Q psy2110         269 EC---EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNSKG  342 (622)
Q Consensus       269 ~~---~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  342 (622)
                      ..   +..+. |...|.+++|+|++. ++++++.|+.+++|+.+...  ....+..|...|.+++|+|+|++|++++.|+
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            43   34444 778999999999987 68889999999999998764  4567888999999999999999999999999


Q ss_pred             eEEEEeCCC---------------ccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc
Q psy2110         343 KVLVLSCPA---------------LELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI  406 (622)
Q Consensus       343 ~i~i~d~~~---------------~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  406 (622)
                      +|++|+...               .+++..+.+ |...|.+++|+|++..|++++.|+.|++|+......     ...+.
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~-----~~~~~  291 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD-----PQQPT  291 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC-----TTSCC
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC-----cceee
Confidence            999999632               134445554 888999999999999999999999999999873211     11111


Q ss_pred             eeeec---cccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         407 QKLQD---LVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       407 ~~~~~---~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      ..+..   ..+...+.+++|+|++. +||+++. ||.|++|++.+++....+
T Consensus       292 ~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~-Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD-DGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEEEETTSSSSCEEEEEECSSSTTEEEEEET-TSCEEEEEECC-------
T ss_pred             EEEEeeecccccCcEeEeEEeCCCceEEEEcCC-CCcEEEEEecCCCCcccc
Confidence            11111   12345688999999984 8889987 999999999887765443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.9e-40  Score=322.92  Aligned_cols=325  Identities=14%  Similarity=0.187  Sum_probs=271.6

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++|+|||++++++..+ +.+.+|............+|...+                 ++++|+|++++|+++
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~~~   69 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVV-----------------CAVTISNPTRHVYTG   69 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCC-----------------CEEEECSSSSEEEEE
T ss_pred             cCCceeEEEECCCCCEEEeecCC-CcEeccccCCccccceeccCCCce-----------------EEEEEecCCcEEEEc
Confidence            44556789999999999988865 556666555554555556788887                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCc
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMH  237 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~  237 (622)
                      + ||.|++|++.++.....+......      .....|.+++|+|++++|++++.++.|++|++.+++  ....+..|..
T Consensus        70 ~-dg~i~iw~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  142 (337)
T 1gxr_A           70 G-KGCVKVWDISHPGNKSPVSQLDCL------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP  142 (337)
T ss_dssp             C-BSEEEEEETTSTTCCSCSEEEECS------CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred             C-CCeEEEEECCCCCceeeeeccccc------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence            9 999999999887544433221100      011468999999999999999999999999999877  5677888999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .|.+++|+|++++|++++.|+.|++||+++++....+. +...+.+++|+|++. ++++++.++.+++||+++...+..+
T Consensus       143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~  221 (337)
T 1gxr_A          143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH  221 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeee
Confidence            99999999999999999999999999999999888887 788999999999886 6778889999999999988776665


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN  396 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~  396 (622)
                      . +...+.+++|+|+++++++++.++.|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++|++..   
T Consensus       222 ~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~---  296 (337)
T 1gxr_A          222 D-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY---  296 (337)
T ss_dssp             E-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---
T ss_pred             c-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC---
Confidence            4 5677899999999999999999999999999988754 6778999999999999999999999999999999983   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                            ...+...   .....+.+++|+|++++|++++. |+.|++|++
T Consensus       297 ------~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~  335 (337)
T 1gxr_A          297 ------GASIFQS---KESSSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             ------CCEEEEE---ECSSCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             ------CeEEEEe---cCCCcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence                  2222222   23456788999999999999997 999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.9e-40  Score=328.63  Aligned_cols=297  Identities=22%  Similarity=0.386  Sum_probs=233.0

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccc-------ccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG-------ALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                      .+++|+|||++||+|+ ++.+++|++.+++.+..+..+.......       .......|.+++|+|+|++|++|+.|+.
T Consensus        68 ~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~  146 (393)
T 1erj_A           68 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL  146 (393)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Confidence            5999999999999987 6899999999988777665443211000       0011124899999999999999999999


Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEee
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      |++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+.+...+.+++|+|.         
T Consensus       147 i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~---------  217 (393)
T 1erj_A          147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG---------  217 (393)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST---------
T ss_pred             EEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC---------
Confidence            99999999999999999999999999999999999999999999999999887776665554544444442         


Q ss_pred             CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-------ecCCCCEEEEEE
Q psy2110         298 MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-------KASTTAIKSIEF  370 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~  370 (622)
                                                       +++++++|+.||.|++||+++++.+..+       .+|...|.+++|
T Consensus       218 ---------------------------------~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          218 ---------------------------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             ---------------------------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             ---------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence                                             5566777777777777777777766655       578899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecccccccCCCC---CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         371 ARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG---DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       371 s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      +|++++|++++.|+.|++||+..........   .......+..  +...+.+++|+|++++|++++. |+.|++||+.+
T Consensus       265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~  341 (393)
T 1erj_A          265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKS  341 (393)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGCEEEEEET-TSEEEEEETTT
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCC
Confidence            9999999999999999999997432111000   0112222322  2345678999999999999997 99999999999


Q ss_pred             CeeEEEEecCCCCceeEEEECC------CCCEEEEEe-CCcEEEeecC
Q psy2110         448 GNLVKILHGTKGELLLDVVWHP------VRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       448 ~~~~~~~~~~~~~~v~~v~~sp------~~~~l~s~~-dg~v~iw~~~  488 (622)
                      ++++..+.+|.+. |.+++|+|      ++++|++++ ||+|+||++.
T Consensus       342 ~~~~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          342 GNPLLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CCEEEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            9999999999987 99999886      678999999 9999999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-39  Score=327.52  Aligned_cols=301  Identities=20%  Similarity=0.280  Sum_probs=251.0

Q ss_pred             hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEE-EEeecCccccccceeEEEEcCCCCEE
Q psy2110          78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD-VVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      +.+...+.+++|||||++||+++ + +.+++|++.+++.+..+..|....... .............|++++|+|++++|
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            34666788999999999999987 3 799999999999998887765321000 00000000111236899999999999


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      ++|+.|+.|++||+.+++....+..|.           ..|.+++|+|++++|++++.|+.|++||+.++++...+. +.
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~  206 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVMILQGHE-----------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IE  206 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccCC-----------CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence            999999999999999988887777765           358999999999999999999999999999998887776 55


Q ss_pred             cCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEE--------eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe
Q psy2110         237 HPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKY--------RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDT  307 (622)
Q Consensus       237 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~  307 (622)
                      ..+.+++|+| ++++|++++.|+.|++||+++++.+..+        .|...|.+++|+|++. ++++++.|+.+++||+
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC
Confidence            7899999999 8999999999999999999999887766        2667899999999987 5788999999999999


Q ss_pred             cCC------------ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC---
Q psy2110         308 DGD------------HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR---  372 (622)
Q Consensus       308 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---  372 (622)
                      +..            .....+..|...+.++++++++++|++|+.|+.|++||+.+++++..+.+|...|.+++|++   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~  365 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  365 (393)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcC
Confidence            753            23456678889999999999999999999999999999999999999999999999999986   


Q ss_pred             ---CCCEEEEEeCCCcEEEEeccc
Q psy2110         373 ---RGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       373 ---~~~~l~~~~~d~~i~i~d~~~  393 (622)
                         ++++|++++.|+.|++|++..
T Consensus       366 ~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          366 LGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCCCCCEEEEECCCCcEEECcccc
Confidence               688999999999999999873

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=320.82  Aligned_cols=281  Identities=14%  Similarity=0.211  Sum_probs=236.0

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE---EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK---ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      .+.+++|+|+|++||+|+.| ++|+|||+.++....   ...+|...|                 ++++|+|++++|++|
T Consensus        18 ~v~~l~~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTV-----------------RKVAWSPCGNYLASA   79 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcE-----------------EEEEECCCCCEEEEE
Confidence            56789999999999999976 999999998876432   236788888                 599999999999999


Q ss_pred             eCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecc
Q psy2110         160 CNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISA  234 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~  234 (622)
                      +.|++|++|++..+.  ....+..|.           ..|.+++|+|++++|++++.|+.|++||+.++.   ++..+.+
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~h~-----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTLEGHE-----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             ECCCcEEEEEccCCCeEEEEEccCCC-----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence            999999999988763  345555554           358999999999999999999999999998763   4567889


Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE--QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      |...|.+++|+|++++|++++.|+.|++||+.+++..  ..+. |...|.+++|+|++. ++++++.|+.+++|+.....
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCC
Confidence            9999999999999999999999999999999887643  4444 788999999999987 68899999999999974321


Q ss_pred             ---------------eeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc---------EEEEEecCCCCEE
Q psy2110         312 ---------------QIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------LKASFKASTTAIK  366 (622)
Q Consensus       312 ---------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~  366 (622)
                                     .+..+. .|...+.+++|++++..+++++.|+.|++|+.....         ......+|...|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~  307 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN  307 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence                           122222 277889999999999999999999999999976542         1223357899999


Q ss_pred             EEEEcCCC-CEEEEEeCCCcEEEEeccc
Q psy2110         367 SIEFARRG-NCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       367 ~~~~s~~~-~~l~~~~~d~~i~i~d~~~  393 (622)
                      +++|+|++ .+|++++.||.|++|++..
T Consensus       308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          308 CVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            99999998 4999999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.2e-39  Score=313.23  Aligned_cols=283  Identities=18%  Similarity=0.268  Sum_probs=247.4

Q ss_pred             hccc-cceeEEEEcCCC-CEEEEecCCCCeEEEEEcCC-----CceEEEEeccCcceeEEEEeecCccccccceeEEEEc
Q psy2110          78 LVNK-TMWKKCCFSGDG-EYVCAGSARQHALYIWEKSV-----GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN  150 (622)
Q Consensus        78 ~~~~-~~~~~~~~sp~~-~~l~~~~~~~~~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s  150 (622)
                      +.+| ..+.+++|+|++ ++|++++.| ++|++|++..     +.++..+.+|...|                 .+++|+
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s   74 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIV-----------------QDCTLT   74 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCE-----------------EEEEEC
T ss_pred             EccccceEEEEEccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccE-----------------EEEEEC
Confidence            3444 457799999975 789999975 9999999864     34577889999988                 599999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         151 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       151 ~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      |++++|++|+.|++|++||+.+++....+..|.           ..|.+++|+|++++|++|+.|+.|++||+. ++++.
T Consensus        75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~  142 (319)
T 3frx_A           75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHK-----------SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLA  142 (319)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-----------SCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCC-----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEE
Confidence            999999999999999999999998888887775           358999999999999999999999999986 56778


Q ss_pred             EeccCCcCeeEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         231 IISAHMHPVCSISWSRN------GYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       231 ~~~~~~~~v~~~~~s~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .+.+|...|.+++|+|.      +..|++++.|+.|++||+++++....+. |...|.+++|+|++. ++++++.|+.|+
T Consensus       143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~  221 (319)
T 3frx_A          143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIM  221 (319)
T ss_dssp             EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEE
T ss_pred             EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEE
Confidence            88899999999999984      4589999999999999999998887776 889999999999987 688899999999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--------CCCCEEEEEEcCCCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA--------STTAIKSIEFARRGN  375 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~i~~~~~s~~~~  375 (622)
                      +||+.+...+..+..+ ..+.+++|+|++.++++++.++ +++|++.....+..+..        +...+.+++|+|+|+
T Consensus       222 iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  299 (319)
T 3frx_A          222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ  299 (319)
T ss_dssp             EEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred             EEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence            9999998888777654 5789999999999999887654 99999998887776653        456799999999999


Q ss_pred             EEEEEeCCCcEEEEeccc
Q psy2110         376 CLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       376 ~l~~~~~d~~i~i~d~~~  393 (622)
                      +|++++.|+.|++||+.+
T Consensus       300 ~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          300 TLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEEETTSCEEEEEEEE
T ss_pred             EEEEeecCceEEEEEEee
Confidence            999999999999999873

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-41  Score=346.89  Aligned_cols=343  Identities=9%  Similarity=0.060  Sum_probs=246.2

Q ss_pred             ccccceeEEEEcCCC---------CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          79 VNKTMWKKCCFSGDG---------EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~---------~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      .....+.+++|+|++         ++||+++.++ .        .            .                    ..
T Consensus       131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~-~--------~------------~--------------------~~  169 (524)
T 2j04_B          131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQY-M--------D------------E--------------------PL  169 (524)
T ss_dssp             ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------------
T ss_pred             ECCCceeEEEecccCCCCccCcCCeEEEEEEecc-c--------C------------C--------------------cc
Confidence            345677899999987         7888888642 1        0            0                    13


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCccccc----ccccccCCCcccccccccceEEEEECCC------CCEEEEEeCCCeEE
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHMHPEFDGALDCISLAVTCAFNKR------GTLLAVGCNDGRIV  219 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~  219 (622)
                      +|+++.|++++.|++|+||++.+++...    .+..+.           ..|.+++|+|+      +.+||+++.||+|+
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~-----------~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr  238 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF-----------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN  238 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECC-----------CSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC-----------CcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence            6888999999999999999998765432    122222           35899999997      57999999999999


Q ss_pred             EEEcCCCce-----------EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe-CCCCeEEE--E
Q psy2110         220 LWDFLTRGI-----------AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKYR-FPSPILKV--Q  284 (622)
Q Consensus       220 iwd~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~--~  284 (622)
                      +||+.++..           ...+.+|...|++++|++++ .|++|+.||+|++||+++++ +...+. |...|.++  .
T Consensus       239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~  317 (524)
T 2j04_B          239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTA  317 (524)
T ss_dssp             EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEE
Confidence            999986532           24678899999999999864 89999999999999999764 334444 88999999  5


Q ss_pred             EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC--CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS--DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      |+|++..++++++.|+.+++||+++......+..|.  ..+.+++|+|+++.+++++.|++|++||++++.++..+.+|.
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~  397 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE  397 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence            677765689999999999999998876655554443  247789999999999999999999999999999888899999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec---cccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110         363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD---LVNKTMWKKCCFSGDGEYVCAGSARQHA  439 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~d~~  439 (622)
                      ..|++++|+|+|++|++++.|++|++||+...          .+..+..   ......+.+++|+|+|+.+.. . ++  
T Consensus       398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~----------~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-~~--  463 (524)
T 2j04_B          398 TTITAIGVSRLHPMVLAGSADGSLIITNAARR----------LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-SS--  463 (524)
T ss_dssp             SCEEEEECCSSCCBCEEEETTTEEECCBSCSS----------TTTCC------CCCCEEEECBCCSSSCEEEE-C-CC--
T ss_pred             CceEEEEeCCCCCeEEEEECCCEEEEEechHh----------hccccccCccceeeeEEEEeccCCCCCeEEc-c-CC--
Confidence            99999999999999999999999999998631          1111110   111123457899999996532 2 12  


Q ss_pred             EEEEECC-CCeeEEEEecCCCCceeEEEECCCCC---EEEEEe-CCcEEEeecCC
Q psy2110         440 LYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRP---IIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       440 i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~---~l~s~~-dg~v~iw~~~~  489 (622)
                      +++|+.. ++.++..+.+|... |.+|+|+|+++   +||+++ ||.|+||++..
T Consensus       464 ~~~~~~~~~g~~~~~l~gh~~~-V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          464 YEVYPLTVNDVSKAKIDAHGIN-ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCCC-------------CCCS-CCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ceecccccCCcceeeecCCCce-EEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            3344432 57778889999876 99999999965   999999 89999999853

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.2e-39  Score=317.62  Aligned_cols=290  Identities=17%  Similarity=0.244  Sum_probs=231.8

Q ss_pred             CCcceEEEE-----cc-CCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchh
Q psy2110           1 SDLSIVASF-----DR-RGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK   74 (622)
Q Consensus         1 t~~V~~~~f-----sp-dg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~   74 (622)
                      ++.|++++|     +| |+++||||+.||+|+|||+...+.....                                ...
T Consensus        21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~--------------------------------~~~   68 (343)
T 2xzm_R           21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF--------------------------------GIP   68 (343)
T ss_dssp             SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS--------------------------------EEE
T ss_pred             hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc--------------------------------ccc
Confidence            468999999     77 9999999999999999997542211000                                000


Q ss_pred             hhhhc-cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC
Q psy2110          75 LQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG  153 (622)
Q Consensus        75 ~~~~~-~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~  153 (622)
                      ...+. +...+.+++|+|++.+|++++.| ++|++||+.+++.+..+.+|...|                 ++++|+|++
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~~~~~h~~~v-----------------~~v~~sp~~  130 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWD-KTLRLWDLRTGTTYKRFVGHQSEV-----------------YSVAFSPDN  130 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETT-SEEEEEETTSSCEEEEEECCCSCE-----------------EEEEECSST
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEEEEEcCCCCcE-----------------EEEEECCCC
Confidence            11112 33457789999999999999975 999999999999999999999998                 599999999


Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC----------CEEEEEeCCCeEEEEEc
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG----------TLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----------~~l~~~~~dg~i~iwd~  223 (622)
                      ++|++++.|++|++||+.............         ....|.+++|+|++          .+|++++.|+.|++|| 
T Consensus       131 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-  200 (343)
T 2xzm_R          131 RQILSAGAEREIKLWNILGECKFSSAEKEN---------HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-  200 (343)
T ss_dssp             TEEEEEETTSCEEEEESSSCEEEECCTTTS---------CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-
T ss_pred             CEEEEEcCCCEEEEEeccCCceeeeecccC---------CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-
Confidence            999999999999999987432211111101         11358999999987          7999999999999999 


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .+.+....+.+|...|.+++|+|+|++|++++.|+.|++||+. .......+.+...|.+++|+|++. ++ +++.++.+
T Consensus       201 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l-a~~~d~~v  278 (343)
T 2xzm_R          201 TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ-WV-AVGTDQGV  278 (343)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC-EE-EEEESSCE
T ss_pred             CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC-EE-EEECCCCE
Confidence            4566777889999999999999999999999999999999994 445556666777899999999986 33 45567889


Q ss_pred             EEEEecCCceee--ccc-----------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         303 VLVDTDGDHQIV--PID-----------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       303 ~~~d~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      ++|++.+.....  .+.           .|...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       279 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          279 KIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            999997654332  222           56778999999999999999999999999997654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-39  Score=313.66  Aligned_cols=295  Identities=18%  Similarity=0.307  Sum_probs=231.8

Q ss_pred             CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--ccccc-cc-ccCCCc
Q psy2110         112 SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKII-SA-HMHPEF  187 (622)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~-~~-~~~~~~  187 (622)
                      .+.+++..+.+|.+.|                 ++++|+|+  +||+|+.|++|++|++..+.  ....+ .. |.    
T Consensus         2 ~~~~~~~~~~~h~~~v-----------------~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~----   58 (330)
T 2hes_X            2 ASINLIKSLKLYKEKI-----------------WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK----   58 (330)
T ss_dssp             -CCEEEEEEECCSSCE-----------------EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC----
T ss_pred             cccccceeeccCCCce-----------------eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc----
Confidence            3456778899999998                 59999988  99999999999999998753  22223 11 22    


Q ss_pred             ccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-------CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcE
Q psy2110         188 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-------RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNV  260 (622)
Q Consensus       188 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i  260 (622)
                             ..|.+++|+|++++|++++.|+.|++|++..       .+....+.+|...|.+++|+|++++|++++.|++|
T Consensus        59 -------~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v  131 (330)
T 2hes_X           59 -------KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV  131 (330)
T ss_dssp             -------SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred             -------CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence                   3589999999999999999999999999853       34667889999999999999999999999999999


Q ss_pred             EEEECCCC----cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEeeC--
Q psy2110         261 CIWDVLTG----ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRR--  331 (622)
Q Consensus       261 ~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~--  331 (622)
                      ++||+...    +++..+. |...|.+++|+|++. ++++++.|+.+++||....  ..+..+..|...|.+++|+|+  
T Consensus       132 ~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            99999432    4555555 788999999999886 6889999999999999876  567788899999999999998  


Q ss_pred             CCEEEEEecCCeEEEEeCCCc--------cEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         332 GQHVVTGNSKGKVLVLSCPAL--------ELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      +.+|++++.|++|++||+..+        .+...+.. |...|.+++|++++ +|++++.|+.|++|+....       .
T Consensus       211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~-------~  282 (330)
T 2hes_X          211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG-------E  282 (330)
T ss_dssp             SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT-------E
T ss_pred             eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC-------c
Confidence            779999999999999998754        34455554 88999999999765 7999999999999998621       1


Q ss_pred             CCcceeeeccccce-eeeeEEEcC--CCCeEEEeeCCCCeEEEEECCC
Q psy2110         403 PEPIQKLQDLVNKT-MWKKCCFSG--DGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       403 ~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      ........ ..+.. .+.+++|+|  ++++|++++. |+.|+||++..
T Consensus       283 ~~~~~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~-Dg~v~~W~~~~  328 (330)
T 2hes_X          283 WKVFAKRA-LCHGVYEINVVKWLELNGKTILATGGD-DGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEES-CTTTTSCEEEEEEC-----CCEEEEET-TSEEEEEEC--
T ss_pred             eEEEeccc-cccccceEEEEEEecCCCceEEEEecC-CCcEEEEEecc
Confidence            01111111 11222 577899999  7899999997 99999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.2e-38  Score=308.96  Aligned_cols=294  Identities=17%  Similarity=0.306  Sum_probs=240.1

Q ss_pred             CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-CCEEEEeeCCCcEEEEecCCcccc-----cccccccCC
Q psy2110         112 SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHP  185 (622)
Q Consensus       112 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~  185 (622)
                      ++.++..+|+||.+.|                 ++++|+|+ +++||||+.|++|+|||+.+++..     ..+..|.  
T Consensus        26 ~~~~l~~tL~GH~~~V-----------------~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--   86 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWV-----------------TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--   86 (340)
T ss_dssp             CEEEEEEEECCCSSCE-----------------EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--
T ss_pred             CceEEEEEECCccCCE-----------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--
Confidence            3445667899999999                 59999998 679999999999999999875432     2333333  


Q ss_pred             CcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy2110         186 EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       186 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~  265 (622)
                               ..|.+++|+|+|++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+
T Consensus        87 ---------~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           87 ---------HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             ---------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ---------CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence                     35899999999999999999999999999999988888889999999999999999999999999999998


Q ss_pred             CCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--CCEEEEEecCCe
Q psy2110         266 LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--GQHVVTGNSKGK  343 (622)
Q Consensus       266 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~  343 (622)
                      ..........                                         ..|...+..++|+++  ..++++++.|+.
T Consensus       158 ~~~~~~~~~~-----------------------------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~  196 (340)
T 4aow_A          158 LGVCKYTVQD-----------------------------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKL  196 (340)
T ss_dssp             TSCEEEEECS-----------------------------------------SSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred             CCCceEEEEe-----------------------------------------ccccCcccceEEccCCCCcEEEEEcCCCE
Confidence            7654332211                                         112233334444443  356788899999


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (622)
                      |++||+++++++..+.+|...|++++|+|++++|++++.|+.|++||+..         ...+..+.   ....+.+++|
T Consensus       197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~---------~~~~~~~~---~~~~v~~~~~  264 (340)
T 4aow_A          197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE---------GKHLYTLD---GGDIINALCF  264 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT---------TEEEEEEE---CSSCEEEEEE
T ss_pred             EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc---------Cceeeeec---CCceEEeeec
Confidence            99999999999999999999999999999999999999999999999983         33444443   3456778899


Q ss_pred             cCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe---------cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         424 SGDGEYVCAGSARQHALYIWEKSVGNLVKILH---------GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       424 spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      +|++.+++++.  |+.|++||+.++..+..+.         +|... |++++|+|++++|++++ ||.|+||++.+
T Consensus       265 ~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          265 SPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-CTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             CSSSSEEEEEE--TTEEEEEETTTTEEEEEECCC-------CCCCC-EEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CCCCceeeccC--CCEEEEEECCCCeEEEeccccceeeeccCCCCC-EEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99987665554  8899999999888776654         45555 99999999999999999 99999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.2e-38  Score=320.86  Aligned_cols=324  Identities=16%  Similarity=0.297  Sum_probs=280.3

Q ss_pred             CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccc
Q psy2110         113 VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALD  192 (622)
Q Consensus       113 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  192 (622)
                      ..+....+.+|.+.+.                .+  +++++++|++|+.||+|++||+.+++....+..|.         
T Consensus       107 ~~~~~~~l~~h~~~v~----------------~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~---------  159 (445)
T 2ovr_B          107 ELKSPKVLKGHDDHVI----------------TC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT---------  159 (445)
T ss_dssp             CCCCCEEEECSTTSCE----------------EE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS---------
T ss_pred             CcceeEEecccCCCcE----------------EE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCC---------
Confidence            3345677889988763                34  45568999999999999999999998888887665         


Q ss_pred             cccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         193 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       193 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                        ..|.+++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +..|++++.||.|++||+.+++.+.
T Consensus       160 --~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~  233 (445)
T 2ovr_B          160 --GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH  233 (445)
T ss_dssp             --SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             --CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence              348899997  5799999999999999999999999999999999999995  6789999999999999999999988


Q ss_pred             EEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         273 KYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       273 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .+. +...+.++++  ++. ++++++.++.+++||+++...+..+..|...+.++.+  ++.++++++.||.|++||+++
T Consensus       234 ~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          234 VLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             EEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             EEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence            887 7889999999  343 6888999999999999999999999999999999988  789999999999999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeE
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYV  430 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l  430 (622)
                      ++++..+..|...+.++.++  +++|++++.|+.|++||+.         ....+..+.... +...+.+++|+  +++|
T Consensus       309 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  375 (445)
T 2ovr_B          309 GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK---------TGQCLQTLQGPNKHQSAVTCLQFN--KNFV  375 (445)
T ss_dssp             CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT---------TCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred             CCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC---------CCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence            99999999999999988874  6699999999999999997         334555555433 33556777885  6899


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEe-----cCCCCceeEEEECCCCCEEEEEe-CCc----EEEeecCC
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILH-----GTKGELLLDVVWHPVRPIIASIS-SGV----VSLWAQNQ  489 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l~s~~-dg~----v~iw~~~~  489 (622)
                      ++++. ||.|++||+.+++.+..+.     +|.+. |.+++|+|++.+|++++ ||+    |.+||++.
T Consensus       376 ~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          376 ITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGV-VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEET-TSEEEEEETTTCCEEEEEEECTTGGGTCE-EEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEeC-CCeEEEEECCCCceeeeeeccccCCCCce-EEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99997 9999999999999998883     45544 99999999999999999 997    99999853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-38  Score=310.14  Aligned_cols=280  Identities=16%  Similarity=0.238  Sum_probs=225.8

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEE-ec-cCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKIL-HG-TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      ...+.+++|+|+  +|++++.| +.|++|++.++  +....+ .+ |...|                 ++++|+|++++|
T Consensus        14 ~~~v~~~~~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v-----------------~~v~~sp~~~~l   73 (330)
T 2hes_X           14 KEKIWSFDFSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAI-----------------RSVAWRPHTSLL   73 (330)
T ss_dssp             SSCEEEEEEETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCE-----------------EEEEECTTSSEE
T ss_pred             CCceeeeccCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCE-----------------EEEEECCCCCEE
Confidence            345778999988  89999875 99999999875  445555 34 88877                 599999999999


Q ss_pred             EEeeCCCcEEEEecCCc-------ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC----
Q psy2110         157 AVGCNDGRIVLWDFLTR-------GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT----  225 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~----  225 (622)
                      ++|+.|++|++|++...       +....+..|.           ..|.+++|+|+|++|++|+.|+.|++||+..    
T Consensus        74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EEEETTSCEEEEEC-------CCCEEEEEEC---------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             EEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence            99999999999998542       2233344443           3589999999999999999999999999943    


Q ss_pred             CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEe-CCCCeEEEEEeCCC-CeEEEEeeCCCc
Q psy2110         226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG--ECEQKYR-FPSPILKVQFHPRN-DHMFLVCPMRHA  301 (622)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~  301 (622)
                      .+++..+.+|...|.+++|+|++.+|++++.|++|++||..++  +++..+. |...|.+++|+|++ ..++++++.|+.
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            2466788999999999999999999999999999999998876  5666665 88899999999984 346889999999


Q ss_pred             EEEEEecCC--------ceeecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEEE-EecCCC-CEEEE
Q psy2110         302 AVLVDTDGD--------HQIVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKAS-FKASTT-AIKSI  368 (622)
Q Consensus       302 i~~~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~~~-~i~~~  368 (622)
                      +++|++...        .....+.. |...+.+++|++++ +|++++.||.|++|+..+++  .... +..|.. .|.++
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence            999999754        23334444 88899999999655 88999999999999988774  3333 356776 89999


Q ss_pred             EEcC--CCCEEEEEeCCCcEEEEecc
Q psy2110         369 EFAR--RGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       369 ~~s~--~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +|+|  ++++|++++.|+.|++|++.
T Consensus       302 ~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          302 KWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEecCCCceEEEEecCCCcEEEEEec
Confidence            9999  68999999999999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=308.93  Aligned_cols=280  Identities=19%  Similarity=0.305  Sum_probs=250.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  112 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW  112 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCc-----------eeecccCCCC--ceEEEEEeeCCCEEE
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDH-----------QIVPIDEDSD--LSIVASFDRRGQHVV  336 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~~~l~  336 (622)
                      .+...+.+++|+|++.. ++++..+     +.+.+||+....           ....+..+..  .+.+++|+|++++++
T Consensus       113 ~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (369)
T 3zwl_B          113 KSPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII  191 (369)
T ss_dssp             ECSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEE
T ss_pred             ecCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEE
Confidence            99999999999999884 5666666     999999997653           2233334444  899999999999999


Q ss_pred             EEecCCeEEEEeCCC-ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110         337 TGNSKGKVLVLSCPA-LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK  415 (622)
Q Consensus       337 ~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (622)
                      +++.+|.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+..         ...+..+.   ..
T Consensus       192 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~---~~  259 (369)
T 3zwl_B          192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST---------LQVLKKYE---TD  259 (369)
T ss_dssp             EEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---------CCEEEEEE---CS
T ss_pred             EEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC---------Cceeeeec---CC
Confidence            999999999999998 788999999999999999999999999999999999999983         34444443   44


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCC--------------eEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQH--------------ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG  480 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg  480 (622)
                      ..+..++|+|+++++++++. ++              .+++||..+++.+..+.+|... |++++|+|++++|++++ ||
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-LNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTS
T ss_pred             CCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-EEEEEECCCCCEEEEEcCCC
Confidence            56678999999999999997 55              8999999999999999999887 99999999999999999 99


Q ss_pred             cEEEeecCC
Q psy2110         481 VVSLWAQNQ  489 (622)
Q Consensus       481 ~v~iw~~~~  489 (622)
                      .|++|++..
T Consensus       338 ~v~iw~~~~  346 (369)
T 3zwl_B          338 FIRLHHFEK  346 (369)
T ss_dssp             EEEEEEECH
T ss_pred             eEEEEECcc
Confidence            999999964

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-40  Score=337.53  Aligned_cols=340  Identities=11%  Similarity=0.060  Sum_probs=240.8

Q ss_pred             CcceEEEEccCC---------cEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110           2 DLSIVASFDRRG---------QHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI   72 (622)
Q Consensus         2 ~~V~~~~fspdg---------~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~   72 (622)
                      ..|.+|+|+|++         ++||+|+.++..        ....+++..+++++.|++|++|++.....        ..
T Consensus       134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~~~~~~~~~laS~s~D~tI~iWd~~~~~~--------~~  197 (524)
T 2j04_B          134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------EPLNEHLEMFDKEKHSSCIQIFKMNTSTL--------HC  197 (524)
T ss_dssp             C--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------CEEEEEEEEETTTC--------CE
T ss_pred             CceeEEEecccCCCCccCcCCeEEEEEEecccC--------CccchhhhhhccCCCCceEEEEEccCCCC--------Cc
Confidence            468999999987         899999876532        11246778899999999999999864210        01


Q ss_pred             hhhhhhcc-ccceeEEEEcCC------CCEEEEecCCCCeEEEEEcCCCce-----------EEEEeccCcceeEEEEee
Q psy2110          73 QKLQDLVN-KTMWKKCCFSGD------GEYVCAGSARQHALYIWEKSVGNL-----------VKILHGTKGELLLDVVEF  134 (622)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~sp~------~~~l~~~~~~~~~i~vwd~~~~~~-----------~~~~~~~~~~v~~~~~~~  134 (622)
                      .....+.+ ...+.+++|+|+      +.+||+++.| ++|++||+.++..           ...+.+|...+       
T Consensus       198 ~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v-------  269 (524)
T 2j04_B          198 VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI-------  269 (524)
T ss_dssp             EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE-------
T ss_pred             eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC-CeEEEEEcCCCccccccceeecCceEEEEcCCCCE-------
Confidence            11122333 356889999997      5799999975 9999999986642           23567777766       


Q ss_pred             cCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccc-ccccccccCCCcccccccccceEEE--EECCCC-CEEE
Q psy2110         135 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-AKIISAHMHPEFDGALDCISLAVTC--AFNKRG-TLLA  210 (622)
Q Consensus       135 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g-~~l~  210 (622)
                                ++++|++++ .|++|+.||+|++||+.++.. ...+..|.           ..|.++  +|+|+| ++|+
T Consensus       270 ----------~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~-----------~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          270 ----------TTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD-----------SYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             ----------EEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS-----------SCEEEEEEECCTTSCCEEE
T ss_pred             ----------EEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc-----------ccEEEEEEEcCCCCCeEEE
Confidence                      699999864 899999999999999987643 33355554           358888  678888 8999


Q ss_pred             EEeCCCeEEEEEcCCCceEEEeccCCc--CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeC
Q psy2110         211 VGCNDGRIVLWDFLTRGIAKIISAHMH--PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHP  287 (622)
Q Consensus       211 ~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  287 (622)
                      +++.|++|++||+.++++...+.+|..  .|.+++|+|+++.|++++.|++|++||++++.+...+. |...|.+++|+|
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            999999999999999887777777653  58899999999999999999999999999998766554 889999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEEecCCceeeccc-----CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecC
Q psy2110         288 RNDHMFLVCPMRHAAVLVDTDGDHQIVPID-----EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKAS  361 (622)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~  361 (622)
                      +++ ++++++.|+.+++|++... ......     .+...+..++|+|+++.+.. ..  .+.+|+.. ++.++..+.+|
T Consensus       408 ~g~-~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh  482 (524)
T 2j04_B          408 LHP-MVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAH  482 (524)
T ss_dssp             SCC-BCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------C
T ss_pred             CCC-eEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCC
Confidence            988 5788999999999998653 111111     11124668899999985532 22  23344332 46778889999


Q ss_pred             CCCEEEEEEcCCCC---EEEEEeCCCcEEEEecc
Q psy2110         362 TTAIKSIEFARRGN---CLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       362 ~~~i~~~~~s~~~~---~l~~~~~d~~i~i~d~~  392 (622)
                      ...|.+++|+|++.   ++++|+.+|.|+||+++
T Consensus       483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             CceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            99999999999964   89999999999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.2e-37  Score=333.94  Aligned_cols=292  Identities=17%  Similarity=0.326  Sum_probs=240.8

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCccc-----ccccccccCCCccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGI-----AKIISAHMHPEFDG  189 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~~  189 (622)
                      ....+++|.+.|                 ++++|+|++ ++|++|+.|++|++|++.+...     ...+..|.      
T Consensus       374 ~~~~l~~H~~~V-----------------~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------  430 (694)
T 3dm0_A          374 LKGTMRAHTDMV-----------------TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------  430 (694)
T ss_dssp             EEEEEECCSSCE-----------------EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS------
T ss_pred             hhhhcccCCcee-----------------EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC------
Confidence            345688999988                 599999875 6999999999999999976432     23344443      


Q ss_pred             ccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy2110         190 ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       190 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                           ..|.+++|+|++++|++|+.|+.|++||+.++...+.+.+|...|.+++|+|++++|++++.|++|++||+....
T Consensus       431 -----~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          431 -----HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             -----SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred             -----CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence                 358999999999999999999999999999999999999999999999999999999999999999999975432


Q ss_pred             EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC--CEEEEEecCCeEEEE
Q psy2110         270 CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG--QHVVTGNSKGKVLVL  347 (622)
Q Consensus       270 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~  347 (622)
                      ......                                       ....|...+.+++|+|++  ..+++++.|+.|++|
T Consensus       506 ~~~~~~---------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw  546 (694)
T 3dm0_A          506 KYTISE---------------------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW  546 (694)
T ss_dssp             EEEECS---------------------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred             ceeecc---------------------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE
Confidence            211110                                       112355667788888876  579999999999999


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCC
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG  427 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  427 (622)
                      |++++++...+.+|...|++++|+|++++|++++.|+.|++||+..         ...+..+   .....+.+++|+|++
T Consensus       547 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~---------~~~~~~~---~~~~~v~~~~~sp~~  614 (694)
T 3dm0_A          547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE---------GKKLYSL---EANSVIHALCFSPNR  614 (694)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT---------TEEEECC---BCSSCEEEEEECSSS
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CceEEEe---cCCCcEEEEEEcCCC
Confidence            9999999999999999999999999999999999999999999983         2233333   234567889999999


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC------------------ceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGE------------------LLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      .+|++++  ++.|+|||+.+++.+..+..+...                  .+++++|+|++++|++++ ||+|+||++.
T Consensus       615 ~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          615 YWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEE--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            9988876  567999999999988877543210                  267899999999999999 9999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-37  Score=305.74  Aligned_cols=284  Identities=15%  Similarity=0.218  Sum_probs=255.1

Q ss_pred             hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      ..+...+.+++|+|++++|++++.+ +.|++||+.+++.+..+.+|...+                 ++++|+|++++|+
T Consensus        29 ~~h~~~v~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~   90 (369)
T 3zwl_B           29 TGHERPLTQVKYNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTI-----------------WSIDVDCFTKYCV   90 (369)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCE-----------------EEEEECTTSSEEE
T ss_pred             EEeeceEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcE-----------------EEEEEcCCCCEEE
Confidence            3455668899999999999999975 999999999999999999999988                 5999999999999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCc-----
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRG-----  227 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~-----  227 (622)
                      +++.||.|++||+.+++....+...            ..+.+++|+|++++|++++.+     +.|++|++.+..     
T Consensus        91 s~~~dg~i~iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~  158 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNGQCVATWKSP------------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL  158 (369)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECS------------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred             EEeCCCeEEEEECCCCcEEEEeecC------------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence            9999999999999998887776622            358999999999999999998     999999997653     


Q ss_pred             ------eEEEeccCCc--CeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110         228 ------IAKIISAHMH--PVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYR-FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       228 ------~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                            ....+..|..  .+.+++|+|++++|++++.||.|++||+.+ ++....+. +...|.+++|+|++. ++++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  237 (369)
T 3zwl_B          159 TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSS  237 (369)
T ss_dssp             EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred             cccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEec
Confidence                  3344556666  999999999999999999999999999998 67777777 788999999999887 578888


Q ss_pred             CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC--------------eEEEEeCCCccEEEEEecCCC
Q psy2110         298 MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG--------------KVLVLSCPALELKASFKASTT  363 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~  363 (622)
                      .++.+++||+++...+..+. +...+..++|+|+++++++++.++              .+++||..+++.+..+..|..
T Consensus       238 ~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  316 (369)
T 3zwl_B          238 RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG  316 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred             CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence            99999999999888777766 677889999999999999999888              899999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      .|++++|+|++++|++++.|+.|++|++..
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            999999999999999999999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.2e-37  Score=313.03  Aligned_cols=318  Identities=17%  Similarity=0.307  Sum_probs=273.6

Q ss_pred             hccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          78 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        78 ~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      +.+|......+++++|++|++|+.+ |.|++||+.+++.+..+.+|.+.|                 ++++|+  +++|+
T Consensus       114 l~~h~~~v~~~~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~~--~~~l~  173 (445)
T 2ovr_B          114 LKGHDDHVITCLQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGV-----------------WSSQMR--DNIII  173 (445)
T ss_dssp             EECSTTSCEEEEEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCE-----------------EEEEEE--TTEEE
T ss_pred             ecccCCCcEEEEEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCE-----------------EEEEec--CCEEE
Confidence            3444432222466679999999975 999999999999999999999988                 589997  66999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      +|+.||+|++||+.+++....+..|.           ..|.+++|+  ++.+++|+.||.|++||+.+++.+..+.+|..
T Consensus       174 s~~~dg~i~vwd~~~~~~~~~~~~h~-----------~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  240 (445)
T 2ovr_B          174 SGSTDRTLKVWNAETGECIHTLYGHT-----------STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA  240 (445)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred             EEeCCCeEEEEECCcCcEEEEECCCC-----------CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc
Confidence            99999999999999998888777665           348888885  57899999999999999999999999999999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .|.+++|  ++++|++++.||.|++||+++++++..+. +...+.++.|  ++. .+++++.++.+++||+++...+..+
T Consensus       241 ~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL  315 (445)
T ss_dssp             CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEE
Confidence            9999999  78899999999999999999999998887 7789999999  444 6889999999999999999999999


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..|...+.++.+  +++++++|+.||.|++||+++++.+..+..   |...|++++|+  +++|++++.||.|++||+. 
T Consensus       316 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~-  390 (445)
T 2ovr_B          316 TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK-  390 (445)
T ss_dssp             CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT-
T ss_pred             cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC-
Confidence            989888877765  577999999999999999999999999986   88899999996  5799999999999999998 


Q ss_pred             ccccCCCCCCCcceeee---ccccceeeeeEEEcCCCCeEEEeeCCCCe----EEEEECCC
Q psy2110         394 VLNAGKDGDPEPIQKLQ---DLVNKTMWKKCCFSGDGEYVCAGSARQHA----LYIWEKSV  447 (622)
Q Consensus       394 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~d~~----i~iwd~~~  447 (622)
                              ....+..+.   .......+.+++|+|+|.++++++. ||.    |.|||+..
T Consensus       391 --------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~-dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 --------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-NGTEETKLLVLDFDV  442 (445)
T ss_dssp             --------TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-SSSSCCEEEEEECCC
T ss_pred             --------CCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc-CCCCccEEEEEECCC
Confidence                    334444442   2234567889999999999999997 776    99999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-36  Score=313.03  Aligned_cols=322  Identities=14%  Similarity=0.245  Sum_probs=268.2

Q ss_pred             ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         115 NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      .....+.+|...+.                .++.+  ++++|++|+.||+|++||+.+++.+..+..|.           
T Consensus       112 ~~~~~l~~h~~~v~----------------~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~-----------  162 (464)
T 3v7d_B          112 PQRTTLRGHMTSVI----------------TCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD-----------  162 (464)
T ss_dssp             CEEEEEECCSSSCE----------------EEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS-----------
T ss_pred             cceEEEcCCCCCcE----------------EEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC-----------
Confidence            35567889988863                45555  57799999999999999999998888887665           


Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc--CCCCEEEEEeCCCcEEEEECCCCcEE-
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS--RNGYKIISASTDNNVCIWDVLTGECE-  271 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~i~iwd~~~~~~~-  271 (622)
                      ..|.+++|+|++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +++.+|++++.|+.|++||+.+++.. 
T Consensus       163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            358999999988 99999999999999999999999999999999999998  57889999999999999999877532 


Q ss_pred             ----------------------EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE
Q psy2110         272 ----------------------QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF  328 (622)
Q Consensus       272 ----------------------~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  328 (622)
                                            ..+. +...+.++  ++++. ++++++.++.+++||+++...+..+..|...+.+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence                                  2222 55667666  45454 6888999999999999999999999999999999999


Q ss_pred             eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         329 DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      +|+++++++|+.||.|++||+++++++..+.+|...|.+++|+  +++|++++.|+.|++||+..         ......
T Consensus       319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~---------~~~~~~  387 (464)
T 3v7d_B          319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND---------YSRKFS  387 (464)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT---------CCEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC---------Cceeee
Confidence            9999999999999999999999999999999999999999997  57999999999999999983         222222


Q ss_pred             eeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       409 ~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      ..   ....+..++|+|++++|++++  ++.|++||+.+++++.. +.+|.. .|.+++|+ ...++++++ ||.+.+|-
T Consensus       388 ~~---~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~~~~~~~~~~~~-~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          388 YH---HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDAD-QIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EE---CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCCEEESCTTTTCS-EEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             ec---CCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCcEEehhhccCCC-cEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            21   223345679999999999988  78999999999999886 455554 49999997 334455555 77666654


Q ss_pred             c
Q psy2110         487 Q  487 (622)
Q Consensus       487 ~  487 (622)
                      +
T Consensus       461 l  461 (464)
T 3v7d_B          461 L  461 (464)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-37  Score=302.48  Aligned_cols=288  Identities=15%  Similarity=0.235  Sum_probs=239.6

Q ss_pred             CCcceEEEEccC-CcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           1 SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         1 t~~V~~~~fspd-g~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      ++.|+|++|+|+ +++||||+.||+|+|||+...+...             .+                     ....+.
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------------~~---------------------~~~~l~   83 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------------GI---------------------PQRALR   83 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------------EE---------------------EEEEEC
T ss_pred             cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------------ce---------------------eeEEEe
Confidence            478999999998 6899999999999999975432110             00                     001111


Q ss_pred             -cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          80 -NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        80 -~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                       +...+.+++|+|++++|++++.| +.|++|+............+...+                 ..+.+++++.+|++
T Consensus        84 ~h~~~V~~~~~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~s  145 (340)
T 4aow_A           84 GHSHFVSDVVISSDGQFALSGSWD-GTLRLWDLTTGTTTRRFVGHTKDV-----------------LSVAFSSDNRQIVS  145 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEECTTSSCEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEccc-ccceEEeecccceeeeecCCCCce-----------------eEEEEeecCcccee
Confidence             23457789999999999999976 999999999999888888888777                 48899999999999


Q ss_pred             eeCCCcEEEEecCCccccc-ccccccCCCcccccccccceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         159 GCNDGRIVLWDFLTRGIAK-IISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      ++.|+.+++||........ ....+.           ..+..++|++++  .++++++.|+.|++||+.+++....+.+|
T Consensus       146 ~s~d~~~~~~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h  214 (340)
T 4aow_A          146 GSRDKTIKLWNTLGVCKYTVQDESHS-----------EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH  214 (340)
T ss_dssp             EETTSCEEEECTTSCEEEEECSSSCS-----------SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ecCCCeEEEEEeCCCceEEEEecccc-----------CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC
Confidence            9999999999987653322 222222           357888998765  57889999999999999999999999999


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      .+.|++++|+|++++|++++.|+.|++||+++.+.+..+.+...+.+++|+|++.  +++++.++.+++||+++...+..
T Consensus       215 ~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          215 TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEe
Confidence            9999999999999999999999999999999999999999999999999999874  55667799999999987755443


Q ss_pred             c---------cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         316 I---------DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       316 ~---------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +         ..|...|.+++|+|+|++|++|+.||.|++||+.+|+
T Consensus       293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            3         3578889999999999999999999999999998875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-38  Score=321.35  Aligned_cols=342  Identities=13%  Similarity=0.152  Sum_probs=263.2

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEeeCCCcE
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRI  165 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i  165 (622)
                      .|+|+++.+++++       .|+ .+++.+..+ .+|.+.|                 ++++|+| ++++|++|+.||+|
T Consensus        34 ~f~~~~~~~~~~~-------~w~-~~g~~~~~~~~~h~~~V-----------------~~~~~s~~~~~~l~s~s~dg~v   88 (437)
T 3gre_A           34 EFGPIQEIVRSPN-------MGN-LRGKLIATLMENEPNSI-----------------TSSAVSPGETPYLITGSDQGVI   88 (437)
T ss_dssp             GGCCCCCCCCCCC-------GGG-CCCCEEEEECTTTTSCE-----------------EEEEEECSSSCEEEEEETTSEE
T ss_pred             hcCCccccccccc-------ccc-ccceEEeeeccCCCCce-----------------EEEEECCCCCCEEEEecCCceE
Confidence            5789998888765       377 457888888 8898888                 5999999 99999999999999


Q ss_pred             EEEecCC---ccccc-ccc-cccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC---CCceEEEecc---
Q psy2110         166 VLWDFLT---RGIAK-IIS-AHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL---TRGIAKIISA---  234 (622)
Q Consensus       166 ~vw~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~---~~~~~~~~~~---  234 (622)
                      ++||+.+   +.... .+. .|           ...|.+++|+|++++|++++.||.|++||+.   +++....+..   
T Consensus        89 ~vwd~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i  157 (437)
T 3gre_A           89 KIWNLKEIIVGEVYSSSLTYDC-----------SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI  157 (437)
T ss_dssp             EEEEHHHHHTTCCCSCSEEEEC-----------SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEeECcccccCcccceeeeccC-----------CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence            9999877   33111 111 12           1469999999999999999999999999995   5554443332   


Q ss_pred             ---------CCcCeeEEE--EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         235 ---------HMHPVCSIS--WSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       235 ---------~~~~v~~~~--~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                               +...+.++.  +++++.+|++++.|+.|++||+++++++..+.   |...|.+++|+|++. ++++++.++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg  236 (437)
T 3gre_A          158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRG  236 (437)
T ss_dssp             EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTS
T ss_pred             EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCC
Confidence                     445666666  56789999999999999999999999998887   568999999999976 688899999


Q ss_pred             cEEEEEecCCceeeccc-CCCCceEEEEEe----eCCCEEEEEecCCeEEEEeCCCccEEEEEecC--------------
Q psy2110         301 AAVLVDTDGDHQIVPID-EDSDLSIVASFD----RRGQHVVTGNSKGKVLVLSCPALELKASFKAS--------------  361 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------  361 (622)
                      .+++||++....+..+. .+...+.+++++    +++.+|++++.||.|++||+++++++..+..|              
T Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T 3gre_A          237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK  316 (437)
T ss_dssp             CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS
T ss_pred             eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc
Confidence            99999999988887765 677789999655    56789999999999999999999988888744              


Q ss_pred             ------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc-ceeeeeEEEcCCCC
Q psy2110         362 ------------TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN-KTMWKKCCFSGDGE  428 (622)
Q Consensus       362 ------------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~  428 (622)
                                  ...|++++|+ ++++|++++.|+.|++||+.         .......+..+.. ...+....++++..
T Consensus       317 ~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (437)
T 3gre_A          317 GLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN---------ELSSSKAVISPSRFSDVFIPTQVTANLT  386 (437)
T ss_dssp             SGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT---------CGGGCEEEECC--CCCEEEEEEEETTEE
T ss_pred             ccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC---------CcccceEEecccccCceEEEEEeecceE
Confidence                        4457888998 77899999999999999998         3345555554432 23344556666665


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC--CCEEEEEe-CCcEEEee
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV--RPIIASIS-SGVVSLWA  486 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~s~~-dg~v~iw~  486 (622)
                      +++..         |+...+........|.+. |++++|+++  +.+|++++ ||.|+||+
T Consensus       387 ~~~~~---------~~~~~~~~~~~~~~h~~~-I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          387 MLLRK---------MKRTSTHSVDDSLYHHDI-INSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEE---------CC-------------CCC-EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEEe---------cccccccccCcccccccc-eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            55544         222333444555667776 999999998  77999999 99999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.9e-37  Score=307.71  Aligned_cols=278  Identities=15%  Similarity=0.179  Sum_probs=233.9

Q ss_pred             cceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEec--cCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         195 SLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       195 ~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      ..|.+++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.+++|+| ++++|++++.|+.|++||+.+ ..
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence            458999999999 999999999999999999888777665  6999999999999 789999999999999999996 44


Q ss_pred             EEEEe-C---CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEE
Q psy2110         271 EQKYR-F---PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVL  345 (622)
Q Consensus       271 ~~~~~-~---~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~  345 (622)
                      ...+. +   ...+.+++|+|++. ++++++.++.+++||+ ....+..+..|...+.+++|+|+++ ++++++.|+.|+
T Consensus       153 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  230 (383)
T 3ei3_B          153 IQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK  230 (383)
T ss_dssp             EEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             eEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEE
Confidence            44443 3   37799999999987 6788999999999999 4667788888999999999999999 999999999999


Q ss_pred             EEeCCC----ccEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-------
Q psy2110         346 VLSCPA----LELKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-------  413 (622)
Q Consensus       346 i~d~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------  413 (622)
                      +||+++    +.++..+ .|...|.+++|+| ++++|++++.|+.|++||++...         ....+..+.       
T Consensus       231 iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~  300 (383)
T 3ei3_B          231 LWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS---------KPDQIIIHPHRQFQHL  300 (383)
T ss_dssp             EEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT---------SCSEEEECCBCCCTTS
T ss_pred             EEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc---------cccccccccccccccc
Confidence            999987    6666666 6899999999999 99999999999999999998422         112222111       


Q ss_pred             --------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC-CCceeEEEECCCCCEEEEEeCCcEEE
Q psy2110         414 --------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVWHPVRPIIASISSGVVSL  484 (622)
Q Consensus       414 --------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~s~~dg~v~i  484 (622)
                              ....+..++|+|+|++  +++. |+.|++||+.+++++..+.++. ...+..++|+|++++|++++||.|++
T Consensus       301 ~~~~~~~~p~~~~~~~~~s~dg~~--s~s~-d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~i  377 (383)
T 3ei3_B          301 TPIKATWHPMYDLIVAGRYPDDQL--LLND-KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILI  377 (383)
T ss_dssp             CCCCCEECSSSSEEEEECBCCTTT--CTTC-CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEE
T ss_pred             cceEEeccCCCCceEEEecCCccc--ccCC-CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEE
Confidence                    1123344677777777  5554 9999999999999999998753 34477779999999999999999999


Q ss_pred             eecC
Q psy2110         485 WAQN  488 (622)
Q Consensus       485 w~~~  488 (622)
                      |+++
T Consensus       378 w~~~  381 (383)
T 3ei3_B          378 WNRE  381 (383)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6e-38  Score=319.97  Aligned_cols=291  Identities=15%  Similarity=0.207  Sum_probs=230.8

Q ss_pred             eEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccc--cccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEE
Q psy2110         145 VTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVL  220 (622)
Q Consensus       145 ~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~i  220 (622)
                      ++++|+| ++++||+|+.||+|+|||+.++.....+.  +|.           ..|.+++|+| ++++|++++.||+|++
T Consensus       123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~-----------~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG-----------GSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS-----------CCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC-----------CCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            6999999 56799999999999999998876544333  333           4589999998 6899999999999999


Q ss_pred             EEcCCCceEEEecc--CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110         221 WDFLTRGIAKIISA--HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       221 wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      ||+.++........  +...+.+++|++++++|++|+.||.|++||++... +..+. |...|.+++|+|+++.++++++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEec
Confidence            99987654433333  34467899999999999999999999999987544 34444 7889999999999999999999


Q ss_pred             CCCcEEEEEecCCcee---ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC------EEEE
Q psy2110         298 MRHAAVLVDTDGDHQI---VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA------IKSI  368 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------i~~~  368 (622)
                      .|+.|++||++.....   .....|...|.+++|+|+|++|++++.||.|++||+.+++....+..|...      +...
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            9999999999876443   334568889999999999999999999999999999998887777665432      1122


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC
Q psy2110         369 EFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG  448 (622)
Q Consensus       369 ~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~  448 (622)
                      .|+|++..+                                          .+.+++++..+++++.+++.|++||..++
T Consensus       351 ~~~~~~~~~------------------------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~~g  388 (435)
T 4e54_B          351 AWHPRYNLI------------------------------------------VVGRYPDPNFKSCTPYELRTIDVFDGNSG  388 (435)
T ss_dssp             EECSSSSCE------------------------------------------EEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred             EEcCCCCEE------------------------------------------EEEEcCCCCeEEEEecCCCEEEEEECCCC
Confidence            233333222                                          23555666666666665778999999999


Q ss_pred             eeEEEEecCCCCceeEE-EECCCCCEEEEEeCCcEEEeecCC
Q psy2110         449 NLVKILHGTKGELLLDV-VWHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       449 ~~~~~~~~~~~~~v~~v-~~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      +++..+.+++...|.++ +|+|++++|++++|++|+||++..
T Consensus       389 ~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~  430 (435)
T 4e54_B          389 KMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQE  430 (435)
T ss_dssp             CEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred             cEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence            99988875544448887 699999999998899999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.3e-37  Score=308.67  Aligned_cols=299  Identities=16%  Similarity=0.231  Sum_probs=244.2

Q ss_pred             EEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CEEEEeeCCCcEEEEecCCcccccccccccCC
Q psy2110         107 YIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP  185 (622)
Q Consensus       107 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~  185 (622)
                      .+|++...+....+.+|...|                 ++++|+|++ ++|++|+.||.|++||+.+++....+....+.
T Consensus        56 ~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~  118 (383)
T 3ei3_B           56 FIRSLKSYKLHRTASPFDRRV-----------------TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPG  118 (383)
T ss_dssp             HHHHHTTCEEEEEECCCSSCE-----------------EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTT
T ss_pred             ccccccccceEEeccCCCCCE-----------------EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcC
Confidence            345556677778889999988                 599999999 89999999999999999988776665431111


Q ss_pred             CcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEecc---CCcCeeEEEEcCCCCEEEEEeCCCcEE
Q psy2110         186 EFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHPVCSISWSRNGYKIISASTDNNVC  261 (622)
Q Consensus       186 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~  261 (622)
                               ..|.+++|+| ++++|++++.|+.|++||+.+ .....+..   |...|.+++|+|++++|++++.|+.|+
T Consensus       119 ---------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  188 (383)
T 3ei3_B          119 ---------DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL  188 (383)
T ss_dssp             ---------CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ---------CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence                     4689999999 789999999999999999986 44555544   447899999999999999999999999


Q ss_pred             EEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEEEEEee-CCCEE
Q psy2110         262 IWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIVASFDR-RGQHV  335 (622)
Q Consensus       262 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~l  335 (622)
                      +||++ ++.+..+. |...|.+++|+|+++.++++++.|+.+++||+++    ...+..+ .|...+.+++|+| ++++|
T Consensus       189 i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l  266 (383)
T 3ei3_B          189 LLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKL  266 (383)
T ss_dssp             EEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEE
T ss_pred             EEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEE
Confidence            99994 66666666 8899999999999988899999999999999987    4444444 6889999999999 99999


Q ss_pred             EEEecCCeEEEEeCCCccEEEEEecCC-----------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccC
Q psy2110         336 VTGNSKGKVLVLSCPALELKASFKAST-----------------TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAG  398 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~  398 (622)
                      ++++.|+.|++||+++++....+..|.                 ..+..++|+|++++  +++.|+.|++||+.      
T Consensus       267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~------  338 (383)
T 3ei3_B          267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN------  338 (383)
T ss_dssp             EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT------
T ss_pred             EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC------
Confidence            999999999999999888766666443                 23444666666665  66789999999998      


Q ss_pred             CCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         399 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                         ....+..+..+.....+..++|+|+|++|++++  |+.|+|||+++
T Consensus       339 ---~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s--d~~i~iw~~~~  382 (383)
T 3ei3_B          339 ---SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GFNILIWNRED  382 (383)
T ss_dssp             ---TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE--TTEEEEEECC-
T ss_pred             ---CCceeeeecCCCCCceEEEEEEecCccEEEEec--CCcEEEEecCC
Confidence               345566666544445556679999999999996  78999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-38  Score=320.49  Aligned_cols=322  Identities=14%  Similarity=0.193  Sum_probs=250.8

Q ss_pred             CCcceEEEEcc-CCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           1 SDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         1 t~~V~~~~fsp-dg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      ++.|++++|+| ++++||+|+.||+|+|||+...+..                                 ........+.
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------------------~~~~~~~~~~  109 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------------------EVYSSSLTYD  109 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------------------CCCSCSEEEE
T ss_pred             CCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------------------cccceeeecc
Confidence            36788999999 8889999888888888886431100                                 0011111223


Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC---CCceEEEEeccCcceeEEEEeecCccccccceeEEE--EcCCCC
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS---VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA--FNKRGT  154 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~--~s~d~~  154 (622)
                      +...+.+++|+|++++|++++.| +.|++||+.   +++....+.+|  .+........+   ....+.++.  +++++.
T Consensus       110 h~~~v~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          110 CSSTVTQITMIPNFDAFAVSSKD-GQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---KNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT-SEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS---SCCCEEEEEEEECSSCE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCC-CEEEEEEeccccCCceeeccccc--eeEEEEccCcc---cccCceEEEEEEcCCCC
Confidence            45678899999999999999975 999999994   77777777766  22111111000   122234665  678999


Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-  233 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-  233 (622)
                      +|++++.|+.|++||+.+++.+..+..+.+.         ..|.+++|+|++++|++|+.||.|++||+.+++++..+. 
T Consensus       184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  254 (437)
T 3gre_A          184 LLVALTNLSRVIIFDIRTLERLQIIENSPRH---------GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF  254 (437)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCGGG---------CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeEEEccCCCC---------CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec
Confidence            9999999999999999999888887763111         358999999999999999999999999999999988886 


Q ss_pred             cCCcCeeEEEEcC----CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         234 AHMHPVCSISWSR----NGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       234 ~~~~~v~~~~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      .|...|.+++|+|    ++.+|++++.||.|++||+++++++..+. +...+..+.|+|++..+     .+         
T Consensus       255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~---------  320 (437)
T 3gre_A          255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL-----EE---------  320 (437)
T ss_dssp             TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG-----GG---------
T ss_pred             CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc-----cc---------
Confidence            7888999996664    67799999999999999999999988887 66777778888876532     00         


Q ss_pred             CCceeecccC--CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec--------------------------
Q psy2110         309 GDHQIVPIDE--DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA--------------------------  360 (622)
Q Consensus       309 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------  360 (622)
                           ..+..  |...+.+++|+ ++++|++|+.||.|++||+.+++....+.+                          
T Consensus       321 -----~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (437)
T 3gre_A          321 -----LNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKR  394 (437)
T ss_dssp             -----CCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-
T ss_pred             -----ceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccc
Confidence                 11223  67788999999 889999999999999999999887766654                          


Q ss_pred             -----------CCCCEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q psy2110         361 -----------STTAIKSIEFARR--GNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       361 -----------~~~~i~~~~~s~~--~~~l~~~~~d~~i~i~d  390 (622)
                                 |...|++++|+++  +.+|++++.||.|+||+
T Consensus       395 ~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          395 TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                       8899999999988  77999999999999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.5e-37  Score=330.20  Aligned_cols=288  Identities=15%  Similarity=0.258  Sum_probs=235.3

Q ss_pred             CCcceEEEEccCC-cEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhc
Q psy2110           1 SDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV   79 (622)
Q Consensus         1 t~~V~~~~fspdg-~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~   79 (622)
                      ++.|+|++|+|++ ++||||+.||+|+||++.......            +                      .....+.
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~----------------------~~~~~~~  427 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------G----------------------VAQRRLT  427 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------C----------------------EEEEEEE
T ss_pred             CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------c----------------------cccceec
Confidence            4789999999975 799999999999999974321100            0                      0001112


Q ss_pred             -cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          80 -NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        80 -~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                       |...+.+++|+|++++|++|+.| ++|+|||+.+++....+.+|...|                 ++++|+|++++|++
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s  489 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWD-GELRLWDLAAGVSTRRFVGHTKDV-----------------LSVAFSLDNRQIVS  489 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCE-----------------EEEEECTTSSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCC-CcEEEEECCCCcceeEEeCCCCCE-----------------EEEEEeCCCCEEEE
Confidence             33456789999999999999975 999999999999999999999998                 59999999999999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      |+.|++|++||............. .       .+...|.+++|+|++  ..|++++.|+.|++||+.+++....+.+|.
T Consensus       490 ~s~D~~i~iwd~~~~~~~~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~  561 (694)
T 3dm0_A          490 ASRDRTIKLWNTLGECKYTISEGG-E-------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT  561 (694)
T ss_dssp             EETTSCEEEECTTSCEEEEECSST-T-------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EeCCCEEEEEECCCCcceeeccCC-C-------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            999999999998654222211110 0       011458999999987  589999999999999999999999999999


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      +.|++++|+|++++|++++.||.|++||+.+++.+..+.....+.+++|+|++. ++ +++.++.|++||+++...+..+
T Consensus       562 ~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~-~l-~~~~~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY-WL-CAATEHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EE-EEEcCCCEEEEECCCCCChhhh
Confidence            999999999999999999999999999999999998888888999999999876 33 3445677999999988766544


Q ss_pred             cCC-------------------CCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         317 DED-------------------SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       317 ~~~-------------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ..+                   ...+.+++|+|+|++|++|+.||.|++|++.
T Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            322                   1236789999999999999999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-36  Score=307.55  Aligned_cols=285  Identities=14%  Similarity=0.166  Sum_probs=250.7

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc------eEEEEeccCcceeEEEEeecCccccccceeEEEEcCC-
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN------LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR-  152 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d-  152 (622)
                      +...+.+++|+|  ++|++++.+ |.|++|++.+++      .+..+.+|...|                 ++++|+|+ 
T Consensus        15 h~~~i~~~~~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~   74 (397)
T 1sq9_A           15 HDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGL-----------------HHVDVLQAI   74 (397)
T ss_dssp             SSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCE-----------------EEEEEEEEE
T ss_pred             hhcCeEEEEecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcE-----------------EEEEEeccc
Confidence            445678999999  899999875 999999999988      788899999988                 59999999 


Q ss_pred             ---C---CEEEEeeCCCcEEEEecCCccc-----ccccccccCCCcccccccccceEEEEEC----CCCCE-EEEEeCCC
Q psy2110         153 ---G---TLLAVGCNDGRIVLWDFLTRGI-----AKIISAHMHPEFDGALDCISLAVTCAFN----KRGTL-LAVGCNDG  216 (622)
Q Consensus       153 ---~---~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~-l~~~~~dg  216 (622)
                         +   ++|++++.||.|++|++.+++.     ...+..+....      ....|.+++|+    |++++ |++++.+|
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~l~~~~~dg  148 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM------KKHSFWALKWGASNDRLLSHRLVATDVKG  148 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG------GGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc------CCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence               9   9999999999999999998876     55555442100      01358999999    99999 99999999


Q ss_pred             eEEEEEcCC------CceEE-----Ee-------ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC--
Q psy2110         217 RIVLWDFLT------RGIAK-----II-------SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF--  276 (622)
Q Consensus       217 ~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--  276 (622)
                      .|++||+.+      ++.+.     .+       ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..  
T Consensus       149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  227 (397)
T 1sq9_A          149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH  227 (397)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccc
Confidence            999999998      66655     66       4488999999999999 999999999999999999999888875  


Q ss_pred             -----CCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCceeecccC-------------CCCceEEEEEeeCCCEE
Q psy2110         277 -----PSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDHQIVPIDE-------------DSDLSIVASFDRRGQHV  335 (622)
Q Consensus       277 -----~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l  335 (622)
                           ...+.+++|+|++. ++++++.+   +.+++||+++...+..+..             |...+.+++|+|++++|
T Consensus       228 ~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          228 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             ---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence                 88999999999987 56777788   9999999999988888887             89999999999999999


Q ss_pred             EEEecCCeEEEEeCCCccEEEEEe------cC---------------CCCEEEEEEcCCC----------CEEEEEeCCC
Q psy2110         336 VTGNSKGKVLVLSCPALELKASFK------AS---------------TTAIKSIEFARRG----------NCLLVNTGDR  384 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~~~~~~~~------~~---------------~~~i~~~~~s~~~----------~~l~~~~~d~  384 (622)
                      ++++.||.|++||+.+++++..+.      .|               ...|++++|+|++          ++|++++.|+
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999999999999999999      88               9999999999998          7999999999


Q ss_pred             cEEEEecc
Q psy2110         385 LIRVYNHQ  392 (622)
Q Consensus       385 ~i~i~d~~  392 (622)
                      .|++|++.
T Consensus       387 ~i~iw~~~  394 (397)
T 1sq9_A          387 SIRWFREA  394 (397)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEcC
Confidence            99999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=316.51  Aligned_cols=311  Identities=9%  Similarity=0.075  Sum_probs=250.8

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      ..+.+++|||||+++|+++.| ++|+  |...++.+   .+|...+                 ++++|+|+|       .
T Consensus        16 ~~v~sv~~SpDG~~iASas~D-~TV~--d~~~~~~l---~gh~~~v-----------------~~V~FsPdg-------~   65 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPD-ISIG--QPKYAKDI---NCNSKNL-----------------FHVKEFPLE-------F   65 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSS-EEEE--EECCCSCC---SSBGGGT-----------------EEEEEECCC-------C
T ss_pred             ccEEEEEECCCCCEEEEEcCC-ceee--ccccccee---cCCCccE-----------------EEEEECCCC-------C
Confidence            456689999999999999975 9999  76666544   7899988                 599999999       4


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc----
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH----  237 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----  237 (622)
                      ++.+.+|+..   ....+.....          ..|.+++|||+|++||+++.||.|++|+..+  ++..+. |..    
T Consensus        66 ~~~~~~~~~~---~~~~~~~~~~----------~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           66 ENKLDFELAQ---QNGLLNSQPV----------CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             CCTTTTSCCC---SSCSSTTSCS----------CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             cceEEEEeCC---CceEeecCCC----------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence            5555555543   2222221111          4699999999999999999999999999544  666667 665    


Q ss_pred             -CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEe-----CCCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110         238 -PVCSISWSRNGYKIISASTDNNVCIWDVLTGE-------CEQKYR-----FPSPILKVQFHPRNDHMFLVCPMRHAAVL  304 (622)
Q Consensus       238 -~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~  304 (622)
                       .+.+++|||||++|++|+.||+|++||+.++.       .+..+.     |...|.+++|+|++   +++++.|+.+++
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl  206 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS  206 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence             49999999999999999999999999999885       356653     45699999999998   678888999999


Q ss_pred             EEecCCcee---ecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE--cCCCCEEE
Q psy2110         305 VDTDGDHQI---VPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF--ARRGNCLL  378 (622)
Q Consensus       305 ~d~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~  378 (622)
                      |++.+....   ..+ ..|...|.+++|+  |+.+++++ ++.|++||+.+++......+|...|.+++|  +|++..|+
T Consensus       207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La  283 (588)
T 2j04_A          207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL  283 (588)
T ss_dssp             ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred             EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence            999876632   344 4677899999999  68999887 699999999988774444489999999999  99999999


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      +++.||+ ++|..+.                           ++|+||+..+++.   |+++++|+...+. +..+.+ .
T Consensus       284 ~a~edG~-klw~~d~---------------------------~~~spd~~l~a~~---d~~v~lW~~~g~~-l~~~~~-~  330 (588)
T 2j04_A          284 MSNKTSY-KVLLEDE---------------------------LHVTADNIIAPYL---EKKFKKWSTIWNE-FNNYET-T  330 (588)
T ss_dssp             ECSSCEE-EEEESSS---------------------------EEEECCCSSHHHH---HHHHHHTTTTTTS-SSSSCC-E
T ss_pred             EEcCCCC-EEEeecc---------------------------EEECCCceEEEEc---CCEEEEEECCCCc-eeeecc-c
Confidence            9999999 9998761                           4799999988774   7789999976544 444444 3


Q ss_pred             CCceeEEEECCCCCEEEEEe
Q psy2110         459 GELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       459 ~~~v~~v~~sp~~~~l~s~~  478 (622)
                      . .|.+++|+|+|+++|+++
T Consensus       331 ~-~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          331 L-VIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             E-EEEEEEECTTSSEEEEEE
T ss_pred             e-EEEEEEECCCCCEEEEEE
Confidence            3 399999999999999987

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.5e-37  Score=309.61  Aligned_cols=292  Identities=12%  Similarity=0.176  Sum_probs=250.2

Q ss_pred             eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc------cccccccccCCCccc
Q psy2110         116 LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG------IAKIISAHMHPEFDG  189 (622)
Q Consensus       116 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~~  189 (622)
                      ....+.+|.+.|                 ++++|+|  ++|++|+.||.|++|++.+++      ....+..|.      
T Consensus         8 ~~~~~~~h~~~i-----------------~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~------   62 (397)
T 1sq9_A            8 TANAGKAHDADI-----------------FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK------   62 (397)
T ss_dssp             EEEESSCSSSCE-----------------EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT------
T ss_pred             hhhhhhhhhcCe-----------------EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC------
Confidence            345677898888                 5999998  799999999999999999887      455555443      


Q ss_pred             ccccccceEEEEECCC----C---CEEEEEeCCCeEEEEEcCCCce-----EEEeccC-----CcCeeEEEEc----CCC
Q psy2110         190 ALDCISLAVTCAFNKR----G---TLLAVGCNDGRIVLWDFLTRGI-----AKIISAH-----MHPVCSISWS----RNG  248 (622)
Q Consensus       190 ~~~~~~~v~~~~~s~~----g---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s----~~~  248 (622)
                           ..|.+++|+|+    +   ++|++++.|+.|++|++.+++.     ...+..|     ...|.+++|+    |++
T Consensus        63 -----~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           63 -----SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             -----TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred             -----CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence                 35899999999    9   9999999999999999998887     8888888     5899999999    999


Q ss_pred             CE-EEEEeCCCcEEEEECCC------CcEEE-----EEe--------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         249 YK-IISASTDNNVCIWDVLT------GECEQ-----KYR--------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       249 ~~-l~s~~~d~~i~iwd~~~------~~~~~-----~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ++ |++++.||.|++||+.+      ++.+.     .+.        +...+.+++|+|++  ++++++.++.+++||++
T Consensus       138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~  215 (397)
T 1sq9_A          138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELS  215 (397)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETT
T ss_pred             ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECC
Confidence            99 99999999999999988      55544     442        67889999999998  78899999999999999


Q ss_pred             CCceeecccC---C---CCceEEEEEeeCCCEEEEEecC---CeEEEEeCCCccEEEEEec-------------CCCCEE
Q psy2110         309 GDHQIVPIDE---D---SDLSIVASFDRRGQHVVTGNSK---GKVLVLSCPALELKASFKA-------------STTAIK  366 (622)
Q Consensus       309 ~~~~~~~~~~---~---~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~i~  366 (622)
                      +...+..+..   |   ...+.+++|+|++++|++++.+   |.|++||+++++.+..+..             |...|.
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  295 (397)
T 1sq9_A          216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  295 (397)
T ss_dssp             TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence            9988888888   8   8999999999999999999999   9999999999999999998             999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee------cc-------------ccceeeeeEEEcCCC
Q psy2110         367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ------DL-------------VNKTMWKKCCFSGDG  427 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~~-------------~~~~~~~~~~~spdg  427 (622)
                      +++|+|++++|++++.|+.|++||+..         ...+..+.      .+             .+...+.+++|+|+|
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKT---------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTT---------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCC---------CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            999999999999999999999999983         34445554      22             014667899999999


Q ss_pred             ----------CeEEEeeCCCCeEEEEECCCCe
Q psy2110         428 ----------EYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       428 ----------~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                                ++|++++. |+.|++|++.+|+
T Consensus       367 ~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~g~  397 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCL-DRSIRWFREAGGK  397 (397)
T ss_dssp             TSBSTTCTTSCEEEEEET-TTEEEEEEEEC--
T ss_pred             ccccccccccceEEEecC-CCcEEEEEcCCCC
Confidence                      79999997 9999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-36  Score=303.60  Aligned_cols=285  Identities=14%  Similarity=0.149  Sum_probs=245.4

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      +...+.+++|+|++++|++++.+ +.|++||+.+++  .+..+.+|...+                 ++++|+|++++|+
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~l~   68 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQV-----------------TGVDWAPDSNRIV   68 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCE-----------------EEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcc-----------------cEEEEeCCCCEEE
Confidence            44567899999999999999875 999999999987  889999999988                 5999999999999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce----EEEec
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI----AKIIS  233 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~----~~~~~  233 (622)
                      +++.||.|++||+.+++....+......         ..|.+++|+|++++|++++.++.|++|++..+..    .....
T Consensus        69 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  139 (372)
T 1k8k_C           69 TCGTDRNAYVWTLKGRTWKPTLVILRIN---------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  139 (372)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEECCCCS---------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             EEcCCCeEEEEECCCCeeeeeEEeecCC---------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence            9999999999999887644443221111         3589999999999999999999999999998762    33346


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEe-CCCCeEEEEEeCCCCeEEE
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDV------------------LTGECEQKYR-FPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~------------------~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  294 (622)
                      .|...|.+++|+|++++|++++.|+.|++||+                  ..++.+..+. +...+.+++|+|++. +++
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  218 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVA  218 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEE
Confidence            78999999999999999999999999999995                  4677787775 778999999999887 678


Q ss_pred             EeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC--ccE------------------
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA--LEL------------------  354 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~------------------  354 (622)
                      +++.++.+++||+++...+..+..|...+.+++|+|++++++++ .|+.|++|++.+  ++.                  
T Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (372)
T 1k8k_C          219 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT  297 (372)
T ss_dssp             EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred             EEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence            88899999999999999999999999999999999999988887 899999999987  421                  


Q ss_pred             --------------E------EEE-ecCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEeccc
Q psy2110         355 --------------K------ASF-KASTTAIKSIEFA-RRG---NCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       355 --------------~------~~~-~~~~~~i~~~~~s-~~~---~~l~~~~~d~~i~i~d~~~  393 (622)
                                    .      ..+ .+|...|++++|. ++|   ++|++++.||.|++|++..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                          0      223 3899999999966 676   9999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=302.81  Aligned_cols=285  Identities=11%  Similarity=0.174  Sum_probs=241.6

Q ss_pred             cccceeEEEEcCCCCEEEE-ecC--CCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecCccccccceeEEEEcCC---
Q psy2110          80 NKTMWKKCCFSGDGEYVCA-GSA--RQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDGALDCISLAVTCAFNKR---  152 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~-~~~--~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d---  152 (622)
                      +...+.+++|+|++..+++ ++.  .++.|++||+.+++..... .+|...+                 ++++|+|+   
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~   79 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI-----------------KCGTFGATSLQ   79 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE-----------------EEEECTTCCTT
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE-----------------EEEEEcCCCCC
Confidence            4567889999999976655 543  1599999999998876554 3677777                 59999999   


Q ss_pred             CCEEEEeeCCCcEEEEecCCcc-cccccccccCCCcccccccccceEEE------EECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTC------AFNKRGTLLAVGCNDGRIVLWDFLT  225 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~------~~s~~g~~l~~~~~dg~i~iwd~~~  225 (622)
                      +.+|++++.||.|++|++.+++ ....+..|.           ..|.++      +|+|++++|++++.|+.|++||+.+
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~  148 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK-----------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ  148 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCS-----------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecc-----------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence            6999999999999999999887 666666554           347777      4578999999999999999999998


Q ss_pred             Cc-eEEEeccCCc----CeeEEE----EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC---CCCeEE
Q psy2110         226 RG-IAKIISAHMH----PVCSIS----WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP---RNDHMF  293 (622)
Q Consensus       226 ~~-~~~~~~~~~~----~v~~~~----~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~  293 (622)
                      ++ ....+..|.+    .+.+++    |++++++|++++.|+.|++||+++++......+...+.+++|+|   ++. ++
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~l  227 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMN-KL  227 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCC-EE
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCC-EE
Confidence            87 6777766554    889998    78899999999999999999999999988888999999999999   665 67


Q ss_pred             EEeeCCCcEEEEEecCCceeeccc-----CCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCc---------------
Q psy2110         294 LVCPMRHAAVLVDTDGDHQIVPID-----EDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPAL---------------  352 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---------------  352 (622)
                      ++++.++.+++||+++......+.     .|...+.+++|+|+++ ++++++.||.|++||++++               
T Consensus       228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            888999999999998765554443     8899999999999998 8999999999999998753               


Q ss_pred             ----cEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeccc
Q psy2110         353 ----ELKASFKASTTAIKSIEFARRGNCLL-VNTGDRLIRVYNHQE  393 (622)
Q Consensus       353 ----~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i~d~~~  393 (622)
                          +++..+..|...|++++|+|++++|+ +++.|+.|++|++..
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                46778889999999999999999998 799999999999973

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=317.56  Aligned_cols=317  Identities=10%  Similarity=0.042  Sum_probs=244.1

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN   80 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~   80 (622)
                      +++|.+++|||||+++||++.|++|+  |....+                                       .+  -.+
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---------------------------------------~l--~gh   51 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---------------------------------------DI--NCN   51 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---------------------------------------CC--SSB
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccc---------------------------------------ee--cCC
Confidence            47899999999999999999999998  522111                                       00  024


Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe-ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      ...+.+++|+|+|       . ++.+.+|+.+..   ..+. .|...|                 ++++|||+|++||++
T Consensus        52 ~~~v~~V~FsPdg-------~-~~~~~~~~~~~~---~~~~~~~~~~V-----------------~~vawSPdG~~LAs~  103 (588)
T 2j04_A           52 SKNLFHVKEFPLE-------F-ENKLDFELAQQN---GLLNSQPVCYP-----------------RVCKPSPIDDWMAVL  103 (588)
T ss_dssp             GGGTEEEEEECCC-------C-CCTTTTSCCCSS---CSSTTSCSCCE-----------------EEEEECSSSSCEEEE
T ss_pred             CccEEEEEECCCC-------C-cceEEEEeCCCc---eEeecCCCCcE-----------------EEEEECCCCCEEEEE
Confidence            4566789999999       2 355556654322   2222 445555                 699999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-------EEEe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-------AKII  232 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~-------~~~~  232 (622)
                      +.||.|++|+...  ++..+. +......      ..+.+++|||||++||+|+.||+|++|++.++..       +..+
T Consensus       104 s~dg~V~iwd~~~--~l~~l~-~~~~~~~------~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A          104 SNNGNVSVFKDNK--MLTNLD-SKGNLSS------RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             ETTSCEEEEETTE--EEEECC-CSSCSTT------TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             eCCCcEEEEeCCc--eeeecc-CCCcccc------ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            9999999999544  444444 3211000      2488999999999999999999999999998753       5666


Q ss_pred             ----ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         233 ----SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---EQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       233 ----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                          .+|...|.+++|+|||  +++++.|++|++||+.+++.   .+.+.  |...|.+++|+  +. .+++++ ++.|+
T Consensus       175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIk  248 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVH  248 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEE
T ss_pred             ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEE
Confidence                6788899999999999  88899999999999988773   34553  56789999999  44 555555 58999


Q ss_pred             EEEecCCceeecccCCCCceEEEEE--eeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASF--DRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +||+.+........+|...+..+++  +|++..++++.++|+ ++|...                .++++|++..+++. 
T Consensus       249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~-  310 (588)
T 2j04_A          249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL-  310 (588)
T ss_dssp             EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH-
T ss_pred             EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc-
Confidence            9999988774444479999999999  999999999999999 999977                26699999877774 


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                       |+++++|+...          ..+..+   .....+.+++|||||+.+|+++.
T Consensus       311 -d~~v~lW~~~g----------~~l~~~---~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          311 -EKKFKKWSTIW----------NEFNNY---ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             -HHHHHHTTTTT----------TSSSSS---CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             -CCEEEEEECCC----------Cceeee---ccceEEEEEEECCCCCEEEEEEe
Confidence             99999998752          122222   23455778999999999998875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-35  Score=305.97  Aligned_cols=308  Identities=16%  Similarity=0.305  Sum_probs=259.6

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  167 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v  167 (622)
                      ++++++++|++|+.| |.|++||+.+++.+..+.+|.+.|                 ++++|+|++ +|++|+.||+|++
T Consensus       127 ~~~~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          127 CLQFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGV-----------------WALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEEEETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCE-----------------EEEEECSTT-EEEEEETTSCEEE
T ss_pred             EEEECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCE-----------------EEEEEcCCC-EEEEEeCCCCEEE
Confidence            344467899999975 999999999999999999999998                 599999988 9999999999999


Q ss_pred             EecCCcccccccccccCCCcccccccccceEEEEEC--CCCCEEEEEeCCCeEEEEEcCCCce-----------------
Q psy2110         168 WDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN--KRGTLLAVGCNDGRIVLWDFLTRGI-----------------  228 (622)
Q Consensus       168 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~i~iwd~~~~~~-----------------  228 (622)
                      ||+.+++....+..|.           ..|.+++|+  +++++|++++.|+.|++||+.++..                 
T Consensus       188 wd~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  256 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHN-----------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  256 (464)
T ss_dssp             EETTTTEEEEEECCCS-----------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred             EECCCCcEEEEECCCC-----------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence            9999998888777665           358888888  6789999999999999999987652                 


Q ss_pred             ------EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         229 ------AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       229 ------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                            ...+.+|...+.++  ++++++|++++.|+.|++||+.+++++..+. +...+.+++|+|++. .+++++.|+.
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~  333 (464)
T 3v7d_B          257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTT  333 (464)
T ss_dssp             GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSC
T ss_pred             CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCc
Confidence                  45677888888887  5678999999999999999999999998887 788999999999887 5788999999


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +++||++++..+..+..|...+.+++++  ++++++++.||.|++||+.+++...... +...+..++|++++++|++++
T Consensus       334 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence            9999999999999999999999999987  6899999999999999999888766554 566788899999999999988


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                       |+.|++||+..         .+.+..+. ......+.+++|+  ++.+++++.+++.+.+|-
T Consensus       411 -dg~i~iwd~~~---------g~~~~~~~-~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          411 -ENQFNIYNLRS---------GKLVHANI-LKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             -TTEEEEEETTT---------CCEEESCT-TTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred             -CCeEEEEECCC---------CcEEehhh-ccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence             89999999983         33333311 1234567788997  556655554477665553

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-36  Score=303.40  Aligned_cols=296  Identities=15%  Similarity=0.246  Sum_probs=247.5

Q ss_pred             EEeccCcceeEEEEeecCccccccceeEEEEcCC----CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccc
Q psy2110         119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      ...+|...|                 ++++|+|+    ...+++++.++.|++|++.+++.+..+..+.....      .
T Consensus        13 ~~~~h~~~v-----------------~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~------~   69 (366)
T 3k26_A           13 LKEDHNQPL-----------------FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADA------D   69 (366)
T ss_dssp             EECTTCSCE-----------------EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCT------T
T ss_pred             eecCCCCce-----------------EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCC------C
Confidence            345788887                 59999984    45666777778999999998877776665443211      1


Q ss_pred             cceEEEEECCC----CCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCc
Q psy2110         195 SLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       195 ~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      ..|.+++|+|+    +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            35899999999    67999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             EEEEE----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc----------------------------
Q psy2110         270 CEQKY----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID----------------------------  317 (622)
Q Consensus       270 ~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------  317 (622)
                      ....+    .+...|.+++|+|++. ++++++.++.+++||+++......+.                            
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             EEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            99887    3788999999999887 67888899999999998765443333                            


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--------------EEEEEecCCCCEEEEEEcCC--CCEEEEEe
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--------------LKASFKASTTAIKSIEFARR--GNCLLVNT  381 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~s~~--~~~l~~~~  381 (622)
                      .|...+.+++|+  ++++++++.||.|++||+.+++              .+..+..|...|++++|+|+  +++|++++
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            288889999998  7899999999999999998764              37888899999999999999  99999999


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      .||.|++||+......     ......+..+.....+.+++|+|++++|++++. ||.|++||+.
T Consensus       307 ~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~  365 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD-DASIWRWDRL  365 (366)
T ss_dssp             TTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEEC-
T ss_pred             cCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCCCeEEEEeC-CCEEEEEEec
Confidence            9999999999831110     012234554444577889999999999999997 9999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-36  Score=300.64  Aligned_cols=289  Identities=10%  Similarity=0.105  Sum_probs=219.7

Q ss_pred             cceeEEEEcCCCCEEEEecCC------CCeEEEEEcCCCceE----------EEEeccCcceeEEEEeecCcccccccee
Q psy2110          82 TMWKKCCFSGDGEYVCAGSAR------QHALYIWEKSVGNLV----------KILHGTKGELLLDVVEFDGALDCISLAV  145 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~------~~~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~v~  145 (622)
                      .++++++|+||+++|++|+.+      ++.|++|++..+...          ..+.+|...+                 +
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v-----------------~   77 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSP-----------------T   77 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCC-----------------C
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCce-----------------E
Confidence            457899999999999998743      236999998755321          2345566555                 3


Q ss_pred             EEEEcCCCCEEEE-----------eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-
Q psy2110         146 TCAFNKRGTLLAV-----------GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-  213 (622)
Q Consensus       146 ~~~~s~d~~~l~s-----------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  213 (622)
                      +++++  +..+++           ++.|+++++|++...............  .........+.+++|+|||++|++++ 
T Consensus        78 s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~fSpDg~~la~as~  153 (365)
T 4h5i_A           78 AIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF--DASTNADDYTKLVYISREGTVAAIASS  153 (365)
T ss_dssp             EEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS--SCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred             EEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece--eecCCcccCEEEEEEcCCCCEEEEEEC
Confidence            55544  445554           456788999998765332211111000  00111113578899999999987654 


Q ss_pred             -CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCC
Q psy2110         214 -NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRN  289 (622)
Q Consensus       214 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~  289 (622)
                       .|+.|++||+.+++++..+. |.+.|.+++|+|||++|++++. +.+++|+..+++......   +...+.+++|+|++
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg  231 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD  231 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred             CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence             68999999999999988886 7788999999999999999985 567777777777665433   56779999999999


Q ss_pred             CeEEEEeeCCC---cEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE-ecC
Q psy2110         290 DHMFLVCPMRH---AAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF-KAS  361 (622)
Q Consensus       290 ~~~~~~~~~~~---~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~  361 (622)
                      ..++.++...+   .+++|++.....    ...+..|...|.+++|+|+|++|++|+.|+.|+|||+++++++..+ .+|
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence            86544443332   578888876543    3456788899999999999999999999999999999999999886 689


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ...|++++|+|||++||+++.|++|+||++..
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-35  Score=287.53  Aligned_cols=291  Identities=14%  Similarity=0.228  Sum_probs=247.3

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      .+....+.+|.+.|                 ++++| |++++|++++.||.|++||+.++.....+..+.          
T Consensus         8 ~~~~~~l~~h~~~v-----------------~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~----------   59 (313)
T 3odt_A            8 YQLSATLKGHDQDV-----------------RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ----------   59 (313)
T ss_dssp             CEEEEEECCCSSCE-----------------EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS----------
T ss_pred             HHHHHHhhCCCCCc-----------------EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC----------
Confidence            36778899999998                 59999 999999999999999999998887777776654          


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                       ..|.+++|+|++++|++++.++.|++|++...   +....+.+|...|.+++|  ++++|++++.|+.|++||  .++.
T Consensus        60 -~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~  134 (313)
T 3odt_A           60 -GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL  134 (313)
T ss_dssp             -SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE
T ss_pred             -ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE
Confidence             35899999999999999999999999998754   567788899999999999  678999999999999999  5666


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC-CCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      ...+. +...+.+++|+|....++++++.++.+++||  .......+.. +...+.+++|+|++. +++++.+|.|++||
T Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d  211 (313)
T 3odt_A          135 VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVD  211 (313)
T ss_dssp             EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEE
T ss_pred             EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEE
Confidence            66666 7889999999995555788999999999999  4445555555 888999999999998 99999999999999


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      +++++++..+..|...|++++|+|++ .|++++.|+.|++||+.         ....+..+..+  ...+.+++|+|+++
T Consensus       212 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~--~~~i~~~~~~~~~~  279 (313)
T 3odt_A          212 MHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE---------NGSLKQVITLP--AISIWSVDCMSNGD  279 (313)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTT---------TCCEEEEEECS--SSCEEEEEECTTSC
T ss_pred             CCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECC---------CCceeEEEecc--CceEEEEEEccCCC
Confidence            99999999999999999999999999 58999999999999998         33455555443  34678899999999


Q ss_pred             eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         429 YVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       429 ~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      ++ +++. |+.|++|++.+++.+...
T Consensus       280 ~~-~~~~-dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          280 II-VGSS-DNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             EE-EEET-TSCEEEEESCGGGCCC--
T ss_pred             EE-EEeC-CCcEEEEeCCCCceeehh
Confidence            54 5665 899999999987765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-36  Score=301.94  Aligned_cols=286  Identities=19%  Similarity=0.209  Sum_probs=241.8

Q ss_pred             cccceeEEEEcCC----CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC---
Q psy2110          80 NKTMWKKCCFSGD----GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR---  152 (622)
Q Consensus        80 ~~~~~~~~~~sp~----~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d---  152 (622)
                      +...+.+++|+|+    ...+++++.+ +.|++|++.+++.+..+..|....            ....|++++|+|+   
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~   83 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDAD------------ADENFYTCAWTYDSNT   83 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSC------------TTCCEEEEEEEECTTT
T ss_pred             CCCceEEEEEecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccC------------CCCcEEEEEeccCCCC
Confidence            4567889999984    4445555544 799999999998888877654321            0112369999999   


Q ss_pred             -CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         153 -GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       153 -~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                       +.+|++|+.||.|++||+.+++.+..+..|.           ..|.+++|+| ++++|++++.||.|++||+.+++...
T Consensus        84 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           84 SHPLLAVAGSRGIIRIINPITMQCIKHYVGHG-----------NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             CCEEEEEEETTCEEEEECTTTCCEEEEEESCC-----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCEEEEecCCCEEEEEEchhceEeeeecCCC-----------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEE
Confidence             6799999999999999999998888777654           3589999999 99999999999999999999999888


Q ss_pred             Ee---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----------------------------CCC
Q psy2110         231 II---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----------------------------FPS  278 (622)
Q Consensus       231 ~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~  278 (622)
                      .+   ..|...|.+++|+|++++|++++.||.|++||+++++....+.                             +..
T Consensus       153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence            88   7899999999999999999999999999999999775443222                             778


Q ss_pred             CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce--------------eecccCCCCceEEEEEeeC--CCEEEEEecCC
Q psy2110         279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ--------------IVPIDEDSDLSIVASFDRR--GQHVVTGNSKG  342 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg  342 (622)
                      .|.+++|+  ++ ++++++.++.+++||+.+...              +..+..|...+.+++|+|+  +++|++++.||
T Consensus       233 ~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          233 YVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             CCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             eEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence            89999999  33 788999999999999987643              5667778888999999999  99999999999


Q ss_pred             eEEEEeCCCcc----EEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         343 KVLVLSCPALE----LKASFKAS--TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       343 ~i~i~d~~~~~----~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .|++||+.+++    ....+..|  ...|++++|+|++++|++++.||.|++||+.
T Consensus       310 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          310 KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999875    45577777  7999999999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=307.90  Aligned_cols=351  Identities=16%  Similarity=0.170  Sum_probs=252.7

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  182 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  182 (622)
                      +.+++|++..++....+.+|.+.|                 ++++|+| ++++|++|+.||.|++|++.++.....+...
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   85 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGI-----------------NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK   85 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCE-----------------EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred             CcceeeccccCcceeeeeccCCcE-----------------EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc
Confidence            568889998899999999999998                 5999999 9999999999999999999988766555321


Q ss_pred             cCCC--cccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC---CCEEEEEeC
Q psy2110         183 MHPE--FDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN---GYKIISAST  256 (622)
Q Consensus       183 ~~~~--~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~  256 (622)
                      ....  ..........|.+++|+| ++++|++++.|+.|++||+.+++....+. +...+.++.|++.   +.++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  164 (408)
T 4a11_B           86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTR  164 (408)
T ss_dssp             EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEES
T ss_pred             ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcC
Confidence            1000  000001124689999999 77899999999999999999998887776 6788999999984   459999999


Q ss_pred             CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-eeecc---------------cCC
Q psy2110         257 DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QIVPI---------------DED  319 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~---------------~~~  319 (622)
                      ++.|++||+++++....+. +...|.+++|+|++..++++++.++.+++||++... ....+               ..|
T Consensus       165 ~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (408)
T 4a11_B          165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH  244 (408)
T ss_dssp             SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred             CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence            9999999999999888887 888999999999999889999999999999997654 22222               567


Q ss_pred             CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110         320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS-----TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                      ...+.+++|+|++++|++++.||.|++||+.+++....+..+     ...+........+..+++++.++.|++||+.  
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--  322 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY--  322 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT--
T ss_pred             cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc--
Confidence            888999999999999999999999999999988765444322     1122222223345567778889999999998  


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-E
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-I  473 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~  473 (622)
                             ....+..+..+  ...+.+++|+|++++|++++. ||.|++|++.+++.+.....+..    ...+.|... .
T Consensus       323 -------~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~  388 (408)
T 4a11_B          323 -------SGEQITMLKGH--YKTVDCCVFQSNFQELYSGSR-DCNILAWVPSLYEPVPDDDETTT----KSQLNPAFEDA  388 (408)
T ss_dssp             -------TCCEEEEECCC--SSCEEEEEEETTTTEEEEEET-TSCEEEEEECC---------------------------
T ss_pred             -------CCcceeeeccC--CCeEEEEEEcCCCCEEEEECC-CCeEEEEeCCCCCccCCCCceEe----cccccccccee
Confidence                   34555555543  346788999999999999997 99999999999887766554332    234444433 3


Q ss_pred             EEEEe-CCcEEEeecC
Q psy2110         474 IASIS-SGVVSLWAQN  488 (622)
Q Consensus       474 l~s~~-dg~v~iw~~~  488 (622)
                      +.+++ ++.+++|+..
T Consensus       389 ~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          389 WSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ----------------
T ss_pred             ecccCccCceeecCCc
Confidence            33444 8999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.6e-35  Score=297.31  Aligned_cols=279  Identities=18%  Similarity=0.356  Sum_probs=240.7

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ......++||++ +.||+|.  |++|+|||+.+|++...+.  +|...|                 ++++|+|+|++||+
T Consensus       105 d~y~~~l~wS~~-n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V-----------------~sv~fspdg~~las  164 (420)
T 4gga_A          105 DYYLNLVDWSSG-NVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI-----------------SSVAWIKEGNYLAV  164 (420)
T ss_dssp             CTTCBCEEECTT-SEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE-----------------EEEEECTTSSEEEE
T ss_pred             cccceeEEECCC-CEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcE-----------------EEEEECCCCCEEEE
Confidence            334567999986 5787776  4899999999999888776  455666                 69999999999999


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCc
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMH  237 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~  237 (622)
                      |+.||+|++||+.+++.+..+..|..           .+.++++  ++.+|++|+.|+.+++|+.... ..+..+.+|..
T Consensus       165 gs~Dg~v~iWd~~~~~~~~~~~~h~~-----------~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~  231 (420)
T 4gga_A          165 GTSSAEVQLWDVQQQKRLRNMTSHSA-----------RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ  231 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSS-----------CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             EECCCeEEEEEcCCCcEEEEEeCCCC-----------ceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEeccccc
Confidence            99999999999999988888877653           3666665  5689999999999999998864 45678899999


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EE-EEeCCCCeEEEEEeCCCCeEEEEe--eCCCcEEEEEecCC
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGEC----EQ-KYRFPSPILKVQFHPRNDHMFLVC--PMRHAAVLVDTDGD  310 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~-~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~  310 (622)
                      .+..+.|+++++++++++.|+.+++|+..+++.    +. ...+...|.+++|+|.+..+++++  +.|+.|++||+.++
T Consensus       232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            999999999999999999999999999987753    22 334788999999999988887764  57899999999998


Q ss_pred             ceeecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         311 HQIVPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      .....+..+ ..+.++.|+++++.+++++  .|+.|++||+.+++++..+.+|...|++++|+|+|++|++++.|++|++
T Consensus       312 ~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri  390 (420)
T 4gga_A          312 ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL  390 (420)
T ss_dssp             EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            888777665 4577889999999988765  7899999999999999999999999999999999999999999999999


Q ss_pred             Eeccc
Q psy2110         389 YNHQE  393 (622)
Q Consensus       389 ~d~~~  393 (622)
                      ||+.+
T Consensus       391 Wdv~~  395 (420)
T 4gga_A          391 WRCFE  395 (420)
T ss_dssp             ECCSC
T ss_pred             EECCC
Confidence            99973

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=297.10  Aligned_cols=293  Identities=15%  Similarity=0.247  Sum_probs=232.2

Q ss_pred             EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeC---CCcEEEEecCCcccccccc-cccCCCcccccc
Q psy2110         118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCN---DGRIVLWDFLTRGIAKIIS-AHMHPEFDGALD  192 (622)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~---dg~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~  192 (622)
                      ..+.+|...|                 ++++|+|++..+ ++++.   ||.|++|++.+++...... .+.         
T Consensus        12 ~~~~~h~~~v-----------------~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~---------   65 (357)
T 3i2n_A           12 HIQKGFNYTV-----------------FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA---------   65 (357)
T ss_dssp             EEEEECSSCE-----------------EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES---------
T ss_pred             hhccCCCCce-----------------EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc---------
Confidence            4457788888                 599999999655 56665   8999999999886654433 222         


Q ss_pred             cccceEEEEECCC---CCEEEEEeCCCeEEEEEcCCCc-eEEEeccCCcCeeEEEE------cCCCCEEEEEeCCCcEEE
Q psy2110         193 CISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPVCSISW------SRNGYKIISASTDNNVCI  262 (622)
Q Consensus       193 ~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~------s~~~~~l~s~~~d~~i~i  262 (622)
                        ..|.+++|+|+   +++|++++.||.|++||+.+++ .+..+.+|...|.+++|      ++++++|++++.|+.|++
T Consensus        66 --~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           66 --KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             --SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             --CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence              35899999999   6999999999999999999888 88899999999999954      689999999999999999


Q ss_pred             EECCCCc-EEEEEeC-CC----CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEE
Q psy2110         263 WDVLTGE-CEQKYRF-PS----PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       263 wd~~~~~-~~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (622)
                      ||+.+++ ....+.. ..    .+.+++|+                                       ++|++++++++
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------------------------------~~~~~~~~~l~  184 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFG---------------------------------------NAYNQEERVVC  184 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEE---------------------------------------CCCC-CCCEEE
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEE---------------------------------------eccCCCCCEEE
Confidence            9999876 4444431 11    22222221                                       12678999999


Q ss_pred             EEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee---
Q psy2110         337 TGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR---RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ---  410 (622)
Q Consensus       337 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---  410 (622)
                      +++.+|.|++||+++++... ...|...|.+++|+|   ++.+|++++.|+.|++||++..         .....+.   
T Consensus       185 ~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~  254 (357)
T 3i2n_A          185 AGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---------HPTKGFASVS  254 (357)
T ss_dssp             EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE---------ETTTEEEEEE
T ss_pred             EEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC---------Ccccceeeec
Confidence            99999999999999988754 467789999999999   9999999999999999999842         2222221   


Q ss_pred             ccccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCC-------------------eeEEEEecCCCCceeEEEECCC
Q psy2110         411 DLVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVG-------------------NLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       411 ~~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~-------------------~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      ...+...+.+++|+|+++ +|++++. |+.|++||+..+                   +.+..+.+|... |++++|+|+
T Consensus       255 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~  332 (357)
T 3i2n_A          255 EKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP-ISSLDWSPD  332 (357)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEET-TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC-EEEEEECSS
T ss_pred             cCCCcCCEEEEEECCCCCcEEEEEeC-CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC-eeEEEEcCC
Confidence            112345678899999999 7888887 999999998753                   467778888876 999999999


Q ss_pred             CCEEE-EEe-CCcEEEeecCC
Q psy2110         471 RPIIA-SIS-SGVVSLWAQNQ  489 (622)
Q Consensus       471 ~~~l~-s~~-dg~v~iw~~~~  489 (622)
                      +++|+ +++ ||.|++|++..
T Consensus       333 ~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          333 KRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             STTEEEEEETTSEEEEEEECC
T ss_pred             CCeEEEEecCCCcEEEEECCC
Confidence            99888 788 99999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-37  Score=310.28  Aligned_cols=234  Identities=14%  Similarity=0.169  Sum_probs=196.7

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCc--ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      ++++|+|++++|++|+.|+.|++|++.++  +....+..|.           ..|.+++|+|++++|++++.|+.|++||
T Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~-----------~~v~~~~~s~~~~~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD-----------KIVTCVDWAPKSNRIVTCSQDRNAYVYE   83 (377)
T ss_dssp             SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS-----------SCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred             EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC-----------ceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            69999999999999999999999999987  6666666654           3589999999999999999999999999


Q ss_pred             cCCCc---eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEEe--CCCCeEEEEEeCCCCeEEE
Q psy2110         223 FLTRG---IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC---EQKYR--FPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       223 ~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~~~~  294 (622)
                      +.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.  |...|.+++|+|++. +++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~  162 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLA  162 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEE
Confidence            99877   6777889999999999999999999999999999999998873   55555  788999999999886 688


Q ss_pred             EeeCCCcEEEEEecC------------------CceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE--
Q psy2110         295 VCPMRHAAVLVDTDG------------------DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL--  354 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--  354 (622)
                      +++.|+.+++||+..                  ...+..+ .|...+.+++|+|++++|++++.||.|++||+.+++.  
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            899999999999952                  3345555 8889999999999999999999999999999999887  


Q ss_pred             --EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         355 --KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       355 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                        +..+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus       242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence              78888999999999999999999888766655 77665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=284.17  Aligned_cols=274  Identities=16%  Similarity=0.262  Sum_probs=244.0

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      +...+.+++| |++++|++++.+ |.|++||+.+++....+..|...+                 .+++|+|++++|+++
T Consensus        17 h~~~v~~~~~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~l~~~   77 (313)
T 3odt_A           17 HDQDVRDVVA-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFL-----------------NSVCYDSEKELLLFG   77 (313)
T ss_dssp             CSSCEEEEEE-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCE-----------------EEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEe-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccE-----------------EEEEECCCCCEEEEe
Confidence            3456789999 999999999975 999999999999999999999888                 599999999999999


Q ss_pred             eCCCcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         160 CNDGRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      +.||.|++|++....   ....+..|.           ..|.+++|  ++++|++++.|+.|++||  .++....+..|.
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~  142 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQ-----------GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN  142 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCS-----------SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcc-----------cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence            999999999987653   333343333           35888888  678999999999999999  777888899999


Q ss_pred             cCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee
Q psy2110         237 HPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       237 ~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  313 (622)
                      ..+.+++|++ ++.+|++++.|+.|++||  ..+....+.  +...+.+++|+|++.  +++++.++.+++||+++...+
T Consensus       143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEE
T ss_pred             CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhh
Confidence            9999999998 999999999999999999  445555555  778999999999986  888999999999999999999


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ..+..|...+.+++|+|++ .+++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.|+.|++|++..
T Consensus       219 ~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            9999999999999999999 588999999999999999999999999999999999999998 66799999999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.9e-35  Score=296.98  Aligned_cols=276  Identities=15%  Similarity=0.299  Sum_probs=242.4

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEec-cCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG-TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      +.+++|++  ..+++++.+ +.|++||+.+++....+.. |...+                 ++++|+|++++|++|+.|
T Consensus        96 ~~~~~~s~--~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v-----------------~~v~~s~~~~~l~~~~~d  155 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALE-RNVYVWNADSGSVSALAETDESTYV-----------------ASVKWSHDGSFLSVGLGN  155 (401)
T ss_dssp             CBCEEECT--TSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCE-----------------EEEEECTTSSEEEEEETT
T ss_pred             EEEEeecC--CCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCE-----------------EEEEECCCCCEEEEECCC
Confidence            44577775  456666654 9999999999999888776 66666                 599999999999999999


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC-CCceEEEeccCCcCeeE
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPVCS  241 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~  241 (622)
                      |.|++||+.+++....+..|.           ..|.+++|  ++++|++++.||.|++||+. .......+.+|...|.+
T Consensus       156 g~i~iwd~~~~~~~~~~~~~~-----------~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  222 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAGHQ-----------ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG  222 (401)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             CeEEEEECcCCeEEEEecCCC-----------CceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence            999999999998888777664           35889999  56799999999999999998 56678889999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCceeecccC
Q psy2110         242 ISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       242 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      ++|+|++++|++++.|+.|++||+++++....+. +...|.+++|+|++..++++++  .++.+++||+.+...+..+. 
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-  301 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-  301 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred             EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence            9999999999999999999999999999888876 7889999999999988888876  79999999999888777775 


Q ss_pred             CCCceEEEEEeeCCCEEEE--EecCCeEEEEeCCCccEEE--EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         319 DSDLSIVASFDRRGQHVVT--GNSKGKVLVLSCPALELKA--SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      +...+.+++|+|+++++++  |+.+|.|++|++.+++...  .+.+|...|.+++|+|++++|++++.|+.|++|++..
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            4567999999999999999  4489999999999865544  4678999999999999999999999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.3e-36  Score=302.92  Aligned_cols=307  Identities=16%  Similarity=0.169  Sum_probs=254.8

Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceEEEec------
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIIS------  233 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iwd~~~~~~~~~~~------  233 (622)
                      .++.+++|++..++....+..|.           ..|.+++|+| ++++|++++.||.|++|++.++.....+.      
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~-----------~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~   89 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHG-----------GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS   89 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCS-----------SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE
T ss_pred             ccCcceeeccccCcceeeeeccC-----------CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc
Confidence            34568888888877777777665           3599999999 99999999999999999999876554432      


Q ss_pred             -------cCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCC--eEEEEeeCCCcEE
Q psy2110         234 -------AHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRND--HMFLVCPMRHAAV  303 (622)
Q Consensus       234 -------~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~i~  303 (622)
                             +|...|.+++|+| ++.+|++++.||.|++||+.+++....+.+...+.++.++|.+.  .++++++.++.++
T Consensus        90 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B           90 IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred             ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence                   5999999999999 78899999999999999999999999999999999999999654  3789999999999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCcc-EEEEE---------------ecCCCCEE
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPALE-LKASF---------------KASTTAIK  366 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~  366 (622)
                      +||+++...+..+..|...+.+++|+|+++ .+++++.||.|++||++++. .+..+               ..|...|.
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            999999988888999999999999999998 58899999999999998765 44444               56888999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc---cceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV---NKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      +++|+|++++|++++.|+.|++||+......         ..+....   .............+..+++++. ++.|++|
T Consensus       250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~  319 (408)
T 4a11_B          250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENT---------LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVY  319 (408)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCBC---------CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEE
T ss_pred             EEEEcCCCCEEEEecCCCeEEEEECCCCccc---------eeccccccccccccceeEEecCCCceEEEEec-CCEEEEE
Confidence            9999999999999999999999999843221         1111110   0111111222334455556665 8899999


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      |+.+++++..+.+|.+. |++++|+|++++|++++ ||.|++|++..
T Consensus       320 d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          320 TVYSGEQITMLKGHYKT-VDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             ETTTCCEEEEECCCSSC-EEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             ECcCCcceeeeccCCCe-EEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            99999999999999877 99999999999999999 99999999964

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-37  Score=309.38  Aligned_cols=280  Identities=10%  Similarity=0.137  Sum_probs=225.3

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ...+.+++|+|++++|++++.+ +.|++||+.++  +.+..+.+|...|                 ++++|+|++++|++
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s   72 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIV-----------------TCVDWAPKSNRIVT   72 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCE-----------------EEEEECTTTCCEEE
T ss_pred             CCcEEEEEECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceE-----------------EEEEEeCCCCEEEE
Confidence            3467899999999999999875 99999999988  7888899999988                 59999999999999


Q ss_pred             eeCCCcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEe
Q psy2110         159 GCNDGRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKII  232 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~  232 (622)
                      ++.|++|++||+.++.   ....+..|.           ..|.+++|+|++++|++++.|+.|++||+.+++   ....+
T Consensus        73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  141 (377)
T 3dwl_C           73 CSQDRNAYVYEKRPDGTWKQTLVLLRLN-----------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL  141 (377)
T ss_dssp             EETTSSEEEC------CCCCEEECCCCS-----------SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred             EeCCCeEEEEEcCCCCceeeeeEecccC-----------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence            9999999999999876   333333333           358999999999999999999999999999877   46777


Q ss_pred             cc-CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC------------------CCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         233 SA-HMHPVCSISWSRNGYKIISASTDNNVCIWDVL------------------TGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       233 ~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .. |...|.+++|+|++++|++++.|+.|++||+.                  .++++..+.|...|.+++|+|+++ ++
T Consensus       142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l  220 (377)
T 3dwl_C          142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN-AL  220 (377)
T ss_dssp             CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS-CE
T ss_pred             ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC-EE
Confidence            77 99999999999999999999999999999985                  244555556788999999999987 67


Q ss_pred             EEeeCCCcEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc----------------
Q psy2110         294 LVCPMRHAAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE----------------  353 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------  353 (622)
                      ++++.|+.+++||+.+...    +..+..|...+.+++|+|++++|++++.++.+ +|+.....                
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSF  299 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCB
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccc
Confidence            8889999999999998877    78888999999999999999999999877755 66654111                


Q ss_pred             --------------EE------EEEe----------------cCCCCEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q psy2110         354 --------------LK------ASFK----------------ASTTAIKSIEFARRG-N---CLLVNTGDRLIRVYNH  391 (622)
Q Consensus       354 --------------~~------~~~~----------------~~~~~i~~~~~s~~~-~---~l~~~~~d~~i~i~d~  391 (622)
                                    ..      ..+.                .|...|+++++.+.. .   .|++++.||.|++||+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          300 THTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                          00      1111                288999999976543 3   6999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-35  Score=296.41  Aligned_cols=280  Identities=14%  Similarity=0.189  Sum_probs=240.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      ..|.+++|+|++++|++++.++.|++|++.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            358999999999999999999999999999987  888899999999999999999999999999999999999888655


Q ss_pred             EEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         273 KYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       273 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      .+.   +...+.+++|+|++. ++++++.++.+++||+.....    ......|...+.+++|+|+++++++++.||.|+
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  167 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  167 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence            543   778999999999986 678888999999999987652    333456788999999999999999999999999


Q ss_pred             EEeC------------------CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         346 VLSC------------------PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       346 i~d~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      +||+                  ..++++..+..|...|.+++|+|++++|++++.|+.|++||+..         ...+.
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~  238 (372)
T 1k8k_C          168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK---------KMAVA  238 (372)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG---------TTEEE
T ss_pred             EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC---------CceeE
Confidence            9995                  46788999999999999999999999999999999999999983         34555


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC--Cee--------------------------------E--
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNL--------------------------------V--  451 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~--~~~--------------------------------~--  451 (622)
                      .+..+  ...+.+++|+|++++|+++ . ++.|++|++.+  ++.                                .  
T Consensus       239 ~~~~~--~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (372)
T 1k8k_C          239 TLASE--TLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  314 (372)
T ss_dssp             EEECS--SCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             EEccC--CCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence            55433  3467889999999999888 4 88999999987  431                                0  


Q ss_pred             ----EEE-ecCCCCceeEEEEC-CCC---CEEEEEe-CCcEEEeecCC
Q psy2110         452 ----KIL-HGTKGELLLDVVWH-PVR---PIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       452 ----~~~-~~~~~~~v~~v~~s-p~~---~~l~s~~-dg~v~iw~~~~  489 (622)
                          ..+ .+|.+. |++++|+ +++   .+|++++ ||.|++|++..
T Consensus       315 ~~~~~~~~~~h~~~-v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          315 AAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             ----CCCSSSSSSC-EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccccccccCC-cceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence                223 377765 9999977 666   8999999 99999999854

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=283.14  Aligned_cols=276  Identities=17%  Similarity=0.351  Sum_probs=235.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe--ccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      ..+++||+++ +||+|.  |++|+|||+.++++++.+.  +|...|                 ++++|+|++++|++|+.
T Consensus        28 ~~~l~WS~~~-~lAvg~--D~tV~iWd~~tg~~~~~~~~~~~~~~V-----------------~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYI-----------------SSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS-EEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCE-----------------EEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC-EEEEEe--CCEEEEEECCCCCEEEEEEecCCCCeE-----------------EEEEECCCCCEEEEEEC
Confidence            4579999986 777775  4899999999999988776  455566                 69999999999999999


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceEEEeccCCcCee
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR-GIAKIISAHMHPVC  240 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~  240 (622)
                      ||+|++|++.+++.+..+..|..           .+.  ++++++..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h~~-----------~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSHSA-----------RVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSS-----------CEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             CCcEEEeecCCceeEEEecCccc-----------eEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence            99999999999998888877653           233  45566789999999999999998865 45677889999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEeCCCCeEEEEEeCCCCeEEE--EeeCCCcEEEEEecCCcee
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGEC-----EQKYRFPSPILKVQFHPRNDHMFL--VCPMRHAAVLVDTDGDHQI  313 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~  313 (622)
                      .+.+++++++|++++.|+.|++||+++++.     .....+...+.++.++|++..++.  +++.++.+++|+.......
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            999999999999999999999999988753     223336788999999998887664  4567889999999887665


Q ss_pred             ecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         314 VPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      ... .+...+..+.+++++..+++++  .|+.|++||+++++++..+.+|...|++++|+|++++|++++.|++|+|||+
T Consensus       235 ~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          235 SAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             EEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            544 3556688899999999887755  7899999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q psy2110         392 QE  393 (622)
Q Consensus       392 ~~  393 (622)
                      .+
T Consensus       314 ~~  315 (318)
T 4ggc_A          314 FE  315 (318)
T ss_dssp             SC
T ss_pred             CC
Confidence            73

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.3e-35  Score=293.61  Aligned_cols=287  Identities=11%  Similarity=0.173  Sum_probs=235.1

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .++.|++  ..+++++.|+.|++|++.+++....+.....          ..|.+++|+|++++|++|+.+|.|++||+.
T Consensus        97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDES----------TYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTT----------CCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCC----------CCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            4567765  5688888999999999999887766654311          358999999999999999999999999999


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      +++.+..+.+|...|.+++|  ++++|++++.||.|++||++ .......+. |...|.+++|+|++. ++++++.|+.+
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v  241 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV  241 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence            99999999999999999999  56799999999999999998 455566665 889999999999876 68889999999


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEEe--cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGN--SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      ++||+++......+..|...+.+++|+|++ .++++++  .|+.|++||+.+++++..+. +...|.+++|+|++++|++
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence            999999998888888999999999999977 4555554  79999999999999998886 5578999999999999999


Q ss_pred             Ee--CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         380 NT--GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       380 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      ++  .|+.|++|++..         ...........+...+.+++|+|+|++|++++. |+.|++|++.+++.+.....+
T Consensus       321 ~~g~~dg~i~v~~~~~---------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~  390 (401)
T 4aez_A          321 THGFPDNNLSIWSYSS---------SGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-DENLKFWRVYDGDHVKRPIPI  390 (401)
T ss_dssp             EECTTTCEEEEEEEET---------TEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-TSEEEEEECCC----------
T ss_pred             EeecCCCcEEEEecCC---------ccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCccccccccc
Confidence            54  799999999983         122222222223456788999999999999997 999999999998877665443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.7e-36  Score=306.74  Aligned_cols=283  Identities=16%  Similarity=0.197  Sum_probs=225.6

Q ss_pred             ccceeEEEEcC-CCCEEEEecCCCCeEEEEEcCCCceE--EEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEE
Q psy2110          81 KTMWKKCCFSG-DGEYVCAGSARQHALYIWEKSVGNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLL  156 (622)
Q Consensus        81 ~~~~~~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l  156 (622)
                      ...|+|++|+| ++++||+|+.| |.|+|||+.+++..  ..+.+|.+.|                 ++++|+| ++++|
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V-----------------~~l~f~p~~~~~l  180 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSI-----------------TGLKFNPLNTNQF  180 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCC-----------------CEEEECSSCTTEE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCE-----------------EEEEEeCCCCCEE
Confidence            44588999999 56789999875 99999999877644  4456898888                 5999998 68899


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      ++|+.||+|++||+.++........+...         ..+.+++|+|++++|++|+.||.|++||+. ++.+..+.+|.
T Consensus       181 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~  250 (435)
T 4e54_B          181 YASSMEGTTRLQDFKGNILRVFASSDTIN---------IWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK  250 (435)
T ss_dssp             EEECSSSCEEEEETTSCEEEEEECCSSCS---------CCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred             EEEeCCCEEEEeeccCCceeEEeccCCCC---------ccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence            99999999999999875433322222211         246789999999999999999999999986 45667888999


Q ss_pred             cCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEE----eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         237 HPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKY----RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       237 ~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ..|++++|+|++. +|++++.|+.|++||+++.+....+    .|...|.+++|+|++. ++++++.|+.|++||+.+..
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCc
Confidence            9999999999876 7889999999999999887644332    3778999999999987 57889999999999998876


Q ss_pred             eeecccCCCC------ceEEEEEeeCCCEEEEEe------------cCCeEEEEeCCCccEEEEEe-cCCCCEEEE-EEc
Q psy2110         312 QIVPIDEDSD------LSIVASFDRRGQHVVTGN------------SKGKVLVLSCPALELKASFK-ASTTAIKSI-EFA  371 (622)
Q Consensus       312 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~-~~s  371 (622)
                      ....+..|..      ......|++++..++++.            .++.|++||..+++.+..+. .|...|.++ +|+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fs  409 (435)
T 4e54_B          330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFN  409 (435)
T ss_dssp             SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEEC
T ss_pred             cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEEC
Confidence            6555444332      223456777777666654            33579999999999988765 677888887 699


Q ss_pred             CCCCEEEEEeCCCcEEEEeccc
Q psy2110         372 RRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       372 ~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      |+|++|++++ |+.|+||++++
T Consensus       410 pdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          410 PMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             TTSSCEEEEC-SSEEEECCCC-
T ss_pred             CCCCEEEEEc-CCcEEEEECCc
Confidence            9999998876 78999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.5e-35  Score=296.73  Aligned_cols=295  Identities=12%  Similarity=0.244  Sum_probs=233.5

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM   83 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (622)
                      .++|+||+++ +||+|. |++|+|||..+++.                +++...                    ..+...
T Consensus       108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~----------------~~~~~~--------------------~~~~~~  149 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDI----------------LQLLQM--------------------EQPGEY  149 (420)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCE----------------EEEEEC--------------------CSTTCC
T ss_pred             ceeEEECCCC-EEEEEe-CCEEEEEECCCCCE----------------EEEEEe--------------------cCCCCc
Confidence            3567888754 677654 78888888654322                122221                    123345


Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      |.+++|+|+|++||+|+.| +.|+|||+.+++.+..+.+|...+.                 ++++  ++.+|++|+.|+
T Consensus       150 V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~~v~-----------------~~s~--~~~~l~sgs~d~  209 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSARVG-----------------SLSW--NSYILSSGSRSG  209 (420)
T ss_dssp             EEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEE-----------------EEEE--ETTEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCCceE-----------------EEee--CCCEEEEEeCCC
Confidence            7899999999999999975 9999999999999999999998873                 6665  578999999999


Q ss_pred             cEEEEecCCcc-cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc----eEEEeccCCcC
Q psy2110         164 RIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHP  238 (622)
Q Consensus       164 ~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~  238 (622)
                      .+++|+..... .+..+..|.           ..+..+.++|+++++++++.|+.+++|+..+++    .+.....|...
T Consensus       210 ~i~~~d~~~~~~~~~~~~~h~-----------~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~  278 (420)
T 4gga_A          210 HIHHHDVRVAEHHVATLSGHS-----------QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  278 (420)
T ss_dssp             EEEEEETTSSSCEEEEEECCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred             ceeEeeecccceeeEEecccc-----------cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence            99999987643 334444444           348899999999999999999999999998765    34667789999


Q ss_pred             eeEEEEcCCCC-EEEEE--eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEe-eCCCcEEEEEecCCceee
Q psy2110         239 VCSISWSRNGY-KIISA--STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC-PMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       239 v~~~~~s~~~~-~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~  314 (622)
                      |.+++|+|++. .++++  +.|++|++||+.++++...+.....+.++.|+|++..+++++ ..++.|++||+.+...+.
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~  358 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  358 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence            99999999654 55554  468999999999999999999999999999999999877664 478999999999999999


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEE
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKS  367 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  367 (622)
                      .+.+|...|.+++|+|+|++|++|+.|++|++||+....+......+...+..
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~  411 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK  411 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence            99999999999999999999999999999999999877666555555444333

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=297.65  Aligned_cols=280  Identities=18%  Similarity=0.361  Sum_probs=228.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-----------eEEEeccCC------------cCeeEEEEcCCC--C
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-----------IAKIISAHM------------HPVCSISWSRNG--Y  249 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~--~  249 (622)
                      ..|.+++|+|+|++|++|+.||.|++|++.+++           ....+.+|.            ..|++++|+|++  .
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~  108 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA  108 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence            579999999999999999999999999998876           577888998            889999999998  7


Q ss_pred             EEEEEeCCCcEEEEECCCCcEE---------------------------------------EEE--eCCCCeEEEEEeCC
Q psy2110         250 KIISASTDNNVCIWDVLTGECE---------------------------------------QKY--RFPSPILKVQFHPR  288 (622)
Q Consensus       250 ~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~~~~~  288 (622)
                      +|++++.|+.|++||+.+++..                                       ..+  .|...|.+++|+|+
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence            9999999999999998764432                                       122  37789999999999


Q ss_pred             CCeEEEEeeCCCcEEEEEecCC-ceee-------cccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCCccE----E
Q psy2110         289 NDHMFLVCPMRHAAVLVDTDGD-HQIV-------PIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPALEL----K  355 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~~~-~~~~-------~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~  355 (622)
                      +. +++++ .|+.+++||++.. ....       .+..|...+.+++|+|++ ++|++|+.||.|++||+++++.    +
T Consensus       189 ~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          189 YE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             SS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred             CC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence            87 45566 7999999999843 3333       366889999999999998 9999999999999999999886    7


Q ss_pred             EEEecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce-------
Q psy2110         356 ASFKASTT------------AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT-------  416 (622)
Q Consensus       356 ~~~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------  416 (622)
                      ..+..|..            .|.+++|+|++++|++++. +.|++||++.        ...++..+..+....       
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~--------~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM--------ENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC--------CSSCSCCEESCGGGTTTHHHHH
T ss_pred             eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC--------Cccccceeeccccccccccccc
Confidence            88888876            8999999999999999998 9999999983        133444454432211       


Q ss_pred             ------eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC--------------------------------
Q psy2110         417 ------MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK--------------------------------  458 (622)
Q Consensus       417 ------~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------  458 (622)
                            .+..++|+|+|++|++++. |+.|++||+.+++.+ .+.++.                                
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF  415 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred             cccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCccccccccccccc
Confidence                  1234899999999999997 999999999998875 333321                                


Q ss_pred             CCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110         459 GELLLDVVWHPVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       459 ~~~v~~v~~sp~~~~l~s~~dg~v~iw~~  487 (622)
                      ...|..++|+|++.+||+++.+.+++|..
T Consensus       416 ~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          416 NKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             TSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             CCceeEEEECCCCCEEEEEecceeeeecc
Confidence            12388999999999999999666888864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-35  Score=293.04  Aligned_cols=281  Identities=11%  Similarity=0.054  Sum_probs=218.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCC-------eEEEEEcCCCce----------EEEeccCCcCeeEEEEcCCCCEEEEEe---
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDG-------RIVLWDFLTRGI----------AKIISAHMHPVCSISWSRNGYKIISAS---  255 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg-------~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~l~s~~---  255 (622)
                      +|++++|+|+|++|++|+.+.       .|++|++.....          ...+..|...+.+++++  +..++++.   
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~   93 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNEN   93 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCC
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCC
Confidence            699999999999999987543       599999875431          13466788889888774  55666654   


Q ss_pred             --------CCCcEEEEECCCCcEE-E---EEe------CCCCeEEEEEeCCCCeEEE-EeeCCCcEEEEEecCCceeecc
Q psy2110         256 --------TDNNVCIWDVLTGECE-Q---KYR------FPSPILKVQFHPRNDHMFL-VCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       256 --------~d~~i~iwd~~~~~~~-~---~~~------~~~~v~~~~~~~~~~~~~~-~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                              .|+.+++|++.+.... .   ...      ....+..++|+|||+.+++ +++.|+.|++||+.+...+..+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~  173 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI  173 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence                    4678999998765322 1   111      2345889999999997654 4557899999999998888777


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE--EecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEe
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS--FKASTTAIKSIEFARRGNCLLVNTGDR----LIRVYN  390 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~i~d  390 (622)
                      . |...|.+++|+|+|+++++++.++ +.+|+..+++.+..  ...|...|.+++|+|+++++++++.|+    .+++|+
T Consensus       174 ~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          174 E-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             E-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             C-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            5 567799999999999999998665 67777777765543  346888899999999999999998876    588888


Q ss_pred             cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE-ecCCCCceeEEEECC
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVWHP  469 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~v~~sp  469 (622)
                      +...       ................+.+++|||||++||+|+. |++|+|||+.+++++..+ .+|... |++++|+|
T Consensus       252 ~~~~-------~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~~~~~~~~~~~gH~~~-V~~v~fSp  322 (365)
T 4h5i_A          252 IKSG-------NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLKDLSMSKIFKQAHSFA-ITEVTISP  322 (365)
T ss_dssp             EETT-------EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEEEEETTSSSSC-EEEEEECT
T ss_pred             cccc-------eecceeeeeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECCCCcEEEEecCcccCC-EEEEEECC
Confidence            7631       1111111122223356789999999999999997 999999999999999875 788876 99999999


Q ss_pred             CCCEEEEEe-CCcEEEeecCC
Q psy2110         470 VRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       470 ~~~~l~s~~-dg~v~iw~~~~  489 (622)
                      ++++||+++ |++|+||++..
T Consensus       323 dg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          323 DSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEeCCCeEEEEEcCC
Confidence            999999999 99999999953

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.4e-34  Score=276.19  Aligned_cols=247  Identities=13%  Similarity=0.226  Sum_probs=209.7

Q ss_pred             EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc--ccccccccccCCCccccccccc
Q psy2110         118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPEFDGALDCIS  195 (622)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~~  195 (622)
                      ..+.+|.+.|                 ++++|+|+|++||+|+.|++|+||++..+  +.+..+..|.           .
T Consensus         3 ~~~~~h~~~V-----------------~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~-----------~   54 (297)
T 2pm7_B            3 VIANAHNEMI-----------------HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------G   54 (297)
T ss_dssp             EECCSCSSCE-----------------EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS-----------S
T ss_pred             eeccCCcCce-----------------EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc-----------C
Confidence            4567788877                 59999999999999999999999999753  5566666665           3


Q ss_pred             ceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCc
Q psy2110         196 LAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGE  269 (622)
Q Consensus       196 ~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~  269 (622)
                      .|.+++|+++  +++|++|+.|++|++||+.+++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++++.
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            5899999874  8999999999999999998874  55677889999999999997  8899999999999999998763


Q ss_pred             E--EEEE-eCCCCeEEEEEeCCC------------CeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEEEEee
Q psy2110         270 C--EQKY-RFPSPILKVQFHPRN------------DHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVASFDR  330 (622)
Q Consensus       270 ~--~~~~-~~~~~v~~~~~~~~~------------~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~  330 (622)
                      .  ...+ .|...|.+++|+|++            ..++++++.|+.|++||+++..    ....+..|...|.+++|+|
T Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence            2  2233 378899999999974            3579999999999999998765    4567788999999999999


Q ss_pred             CC---CEEEEEecCCeEEEEeCCCcc---EEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         331 RG---QHVVTGNSKGKVLVLSCPALE---LKASF--KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       331 ~~---~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ++   .+|++++.|++|++||+.+..   ....+  ..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            85   899999999999999987643   22333  4678899999999999999999999999999976

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=275.94  Aligned_cols=274  Identities=18%  Similarity=0.270  Sum_probs=229.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec--cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS--AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ..+++||+++ +|++|. |++|+|||+.++++++.+.  +|...|++++|+|++++|++|+.||+|++||+.+++++..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4568999986 777764 8999999999999887765  67778999999999999999999999999999999999888


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      . |...+.++.+.+   .++++++.++.+++|+.... ..+..+..|...+..+.++++++++++++.||.|++||++++
T Consensus       106 ~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          106 TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             cCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            7 666777666554   37889999999999998765 556677889999999999999999999999999999999876


Q ss_pred             c----EEEEEecCCCCEEEEEEcCCCCEEE---EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC
Q psy2110         353 E----LKASFKASTTAIKSIEFARRGNCLL---VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG  425 (622)
Q Consensus       353 ~----~~~~~~~~~~~i~~~~~s~~~~~l~---~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  425 (622)
                      +    .......+...|.+++++|++..++   +++.++.|++|+...         ......   ......+..++|+|
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~---------~~~~~~---~~~~~~v~~~~~~~  250 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---------GACLSA---VDAHSQVCSILWSP  250 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT---------CCEEEE---EECSSCEEEEEEET
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc---------cccccc---ccceeeeeeeeecc
Confidence            5    3455667888999999999876443   456789999999873         222222   22344567789999


Q ss_pred             CCCeEEEee-CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         426 DGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       426 dg~~l~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +++.+++++ ..|+.|+|||+.+++++..+.+|.+. |++++|+|++++|++++ ||+|+||++.
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-VLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999888764 24899999999999999999999987 99999999999999999 9999999984

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=294.84  Aligned_cols=303  Identities=13%  Similarity=0.152  Sum_probs=227.2

Q ss_pred             ccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc-----------eEEEEeccCcceeEEEEeecCccccccceeEE
Q psy2110          79 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN-----------LVKILHGTKGELLLDVVEFDGALDCISLAVTC  147 (622)
Q Consensus        79 ~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~  147 (622)
                      .+...+.+++|+|+|++||+|+.+ |.|+||++.+++           ....+.+|.....     ..........|+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFD-----YLKSLEIEEKINKI   99 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEE-----GGGTEEECCCCCEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEeccccccccccc-----ccccccccCceEEE
Confidence            455678899999999999999975 999999999877           5778888872210     00000001223699


Q ss_pred             EEcCCC--CEEEEeeCCCcEEEEecCCccccccc---ccccC-------------C-------------Ccccccccccc
Q psy2110         148 AFNKRG--TLLAVGCNDGRIVLWDFLTRGIAKII---SAHMH-------------P-------------EFDGALDCISL  196 (622)
Q Consensus       148 ~~s~d~--~~l~s~~~dg~i~vw~~~~~~~~~~~---~~~~~-------------~-------------~~~~~~~~~~~  196 (622)
                      +|+|++  .+|++++.|++|++|++.++......   ..+..             +             ...........
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            999998  79999999999999999875432100   00000             0             00000112246


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEE-------EeccCCcCeeEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAK-------IISAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~  267 (622)
                      |.+++|+|++++|++| .|+.|++||+.+ ++...       .+.+|...|++++|+|++ ++|++++.||.|++||+++
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  258 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA  258 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence            8999999999999998 799999999984 44444       356899999999999998 9999999999999999999


Q ss_pred             CcE----EEEEe-CCC------------CeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-CceeecccCCCCc-------
Q psy2110         268 GEC----EQKYR-FPS------------PILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDL-------  322 (622)
Q Consensus       268 ~~~----~~~~~-~~~------------~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~-------  322 (622)
                      ++.    ...+. +..            .|.+++|+|++.. +++++. +.+++||++. ...+..+..|...       
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            886    56666 333            8999999998874 556666 9999999987 6677777666532       


Q ss_pred             --------eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---------------------------------C
Q psy2110         323 --------SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---------------------------------S  361 (622)
Q Consensus       323 --------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------~  361 (622)
                              +..++|+|++++|++|+.||.|++||+.+++.+. +..                                 +
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF  415 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccccc
Confidence                    2238999999999999999999999999988763 222                                 2


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         362 TTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ...|..++|+|++++||+++.++ +++|..+
T Consensus       416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          416 NKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             TSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            35688999999999999988775 7777643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.9e-34  Score=273.66  Aligned_cols=242  Identities=20%  Similarity=0.334  Sum_probs=203.8

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCC--CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC--CCE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--GTL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--~~~  155 (622)
                      +...+.+++|+|+|++||+|+.| ++|+|||+.+  ++.+..+.+|.+.|                 ++++|+++  +++
T Consensus         8 h~~~V~~~~~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V-----------------~~v~~s~~~~g~~   69 (297)
T 2pm7_B            8 HNEMIHDAVMDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPV-----------------WRVDWAHPKFGTI   69 (297)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCE-----------------EEEEECCGGGCSE
T ss_pred             CcCceEEEEECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCe-----------------EEEEecCCCcCCE
Confidence            34567799999999999999976 9999999974  46788999999998                 59999864  899


Q ss_pred             EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eE
Q psy2110         156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IA  229 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~  229 (622)
                      |++|+.|++|++||+.+++  ....+..|.           ..|.+++|+|+  |.+|++++.|+.|++||+.++.  ..
T Consensus        70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           70 LASCSYDGKVMIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             EEEEETTTEEEEEEBSSSCBCCCEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             EEEEcCCCEEEEEEcCCCceEEEEEeecCC-----------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee
Confidence            9999999999999998874  233333332           35899999998  8999999999999999998763  24


Q ss_pred             EEeccCCcCeeEEEEcCC-------------CCEEEEEeCCCcEEEEECCCCc----EEEEEe-CCCCeEEEEEeCCC--
Q psy2110         230 KIISAHMHPVCSISWSRN-------------GYKIISASTDNNVCIWDVLTGE----CEQKYR-FPSPILKVQFHPRN--  289 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~-------------~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--  289 (622)
                      ..+.+|...|.+++|+|+             +++|++|+.|++|++||+++++    ....+. |...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            567899999999999997             5799999999999999998776    445555 78899999999986  


Q ss_pred             CeEEEEeeCCCcEEEEEecCCc---e--eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDH---Q--IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ..++++++.|+.+++||++...   .  ......+...+.+++|+|+|++|++++.||.|++|+..
T Consensus       219 ~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            5689999999999999998642   1  22224677889999999999999999999999999976

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-34  Score=285.58  Aligned_cols=306  Identities=16%  Similarity=0.215  Sum_probs=222.4

Q ss_pred             EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc----cccccccccCCCccccccc
Q psy2110         118 KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       118 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~----~~~~~~~~~~~~~~~~~~~  193 (622)
                      ..+.+|.+.|                 ++++|+|++++|++|+.||.|++|++.++.    ....+..|.          
T Consensus         5 ~~~~gH~~~v-----------------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~----------   57 (351)
T 3f3f_A            5 PFDSGHDDLV-----------------HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD----------   57 (351)
T ss_dssp             CEECCCSSCE-----------------EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS----------
T ss_pred             ccCcccccce-----------------eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC----------
Confidence            3567888887                 599999999999999999999999998763    333334443          


Q ss_pred             ccceEEEEECC--CCCEEEEEeCCCeEEEEEcCCC---------ceEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcE
Q psy2110         194 ISLAVTCAFNK--RGTLLAVGCNDGRIVLWDFLTR---------GIAKIISAHMHPVCSISWSRN--GYKIISASTDNNV  260 (622)
Q Consensus       194 ~~~v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i  260 (622)
                       ..|.+++|+|  ++++|++++.||.|++||+.++         +....+..|...|.+++|+|+  +.+|++++.||.|
T Consensus        58 -~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           58 -SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             -SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             -CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence             3589999999  6999999999999999999886         557788899999999999999  9999999999999


Q ss_pred             EEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC---CCEEEE
Q psy2110         261 CIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR---GQHVVT  337 (622)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~  337 (622)
                      ++||+++++.+..+.....+..+.+                             ....+...+.+++|+|+   +.++++
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~p~~~~~~~l~~  187 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSI-----------------------------PPANHLQSDFCLSWCPSRFSPEKLAV  187 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSC-----------------------------CCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred             EEecCCChHHhcccccccccccccc-----------------------------ccCCcccceeEEEeccCCCCCcEEEE
Confidence            9999998765433321111111111                             11235567888999997   899999


Q ss_pred             EecCCeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec
Q psy2110         338 GNSKGKVLVLSCPALEL--KASFKASTTAIKSIEFARRG----NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD  411 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  411 (622)
                      ++.++.+.+|+...++.  +..+.+|...|++++|+|++    ++|++++.|+.|++||+......         .... 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~-  257 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP---------LASE-  257 (351)
T ss_dssp             EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred             ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc---------cccC-
Confidence            99999998888877765  67788999999999999998    89999999999999999842111         1111 


Q ss_pred             cccceeeeeEEEcCCCCeEEEeeCC---CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         412 LVNKTMWKKCCFSGDGEYVCAGSAR---QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~l~~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                       ..........+++....++.+...   ...+.+|+....+.+..+.+|... |++++|+|++++|++++ ||.|++|++
T Consensus       258 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          258 -ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE-VWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             ----------------------------------CCSEEEEEEEEECTTSSC-EEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             -CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc-EEEEEEcCCCCEEEEecCCCcEEEEec
Confidence             111111222344444444443321   345667777777888889999887 99999999999999999 999999999


Q ss_pred             CCccc
Q psy2110         488 NQVEN  492 (622)
Q Consensus       488 ~~~~~  492 (622)
                      .....
T Consensus       336 ~~~~~  340 (351)
T 3f3f_A          336 TYSNE  340 (351)
T ss_dssp             CTTSC
T ss_pred             CcCcc
Confidence            75433

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.8e-33  Score=276.31  Aligned_cols=281  Identities=9%  Similarity=0.055  Sum_probs=236.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCc
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDV-LTGE  269 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~-~~~~  269 (622)
                      ..|.+++|+|++++|++++.|+.|++|++.++.   ....+..|...|.+++|+|+++ +|++++.||.|++||+ .+++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            468999999999999999999999999998877   3455668999999999999999 9999999999999999 8888


Q ss_pred             EEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC---------CceeecccCCCCceEEEEEeeCCCEEEEE
Q psy2110         270 CEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG---------DHQIVPIDEDSDLSIVASFDRRGQHVVTG  338 (622)
Q Consensus       270 ~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (622)
                      ......  |...|.+++|+| + .++++++.++.+++||+++         ...+..+. +...+.+++|++++  ++++
T Consensus        92 ~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~  166 (342)
T 1yfq_A           92 FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVG  166 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEE
T ss_pred             eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEE
Confidence            765556  889999999999 4 4788999999999999987         65565555 78889999999887  9999


Q ss_pred             ecCCeEEEEeCCC-cc--EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecccc
Q psy2110         339 NSKGKVLVLSCPA-LE--LKASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN  414 (622)
Q Consensus       339 ~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  414 (622)
                      +.++.|++||+++ +.  .......|...+.+++|+| ++++|++++.|+.|++|+++....   .........+..+..
T Consensus       167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~  243 (342)
T 1yfq_A          167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD---DYNSSKRFAFRCHRL  243 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC---STTCTTCEEEECCCC
T ss_pred             eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc---ccccccceeeecccc
Confidence            9999999999988 54  3445557888999999999 999999999999999999984100   000244455554432


Q ss_pred             -------ceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC-CCCceeEEEECCCCCEEEEEe-CCc-EEE
Q psy2110         415 -------KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT-KGELLLDVVWHPVRPIIASIS-SGV-VSL  484 (622)
Q Consensus       415 -------~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~v~~sp~~~~l~s~~-dg~-v~i  484 (622)
                             ...+.+++|+|++++|++++. ||.|++||+.+++++..+.+| ... |.+++  |++++|++++ ||+ .+.
T Consensus       244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~-v~~~~--~~~~~l~s~s~Dg~~~~~  319 (342)
T 1yfq_A          244 NLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNEDS-VVKIA--CSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSSE-EEEEE--ECSSEEEEEEECTHHHHC
T ss_pred             cccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhhhhcccCCC-ceEec--CCCCeEEEEecCCccccc
Confidence                   336789999999999999997 999999999999999999998 554 99999  9999999999 998 555


Q ss_pred             eec
Q psy2110         485 WAQ  487 (622)
Q Consensus       485 w~~  487 (622)
                      |..
T Consensus       320 ~~~  322 (342)
T 1yfq_A          320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             ccc
Confidence            553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.7e-33  Score=284.26  Aligned_cols=286  Identities=12%  Similarity=0.104  Sum_probs=242.5

Q ss_pred             hhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE-----EEeccCcceeEEEEeecCccccccceeEEEE
Q psy2110          75 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK-----ILHGTKGELLLDVVEFDGALDCISLAVTCAF  149 (622)
Q Consensus        75 ~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  149 (622)
                      +..+..+..+.+++|+|++.++++++. ++.|++||+.+++...     .+.+|...+                 .+++|
T Consensus       116 ~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v-----------------~~~~~  177 (433)
T 3bws_A          116 ISRFKTGFQPKSVRFIDNTRLAIPLLE-DEGMDVLDINSGQTVRLSPPEKYKKKLGFV-----------------ETISI  177 (433)
T ss_dssp             EEEEECSSCBCCCEESSSSEEEEEBTT-SSSEEEEETTTCCEEEECCCHHHHTTCCEE-----------------EEEEE
T ss_pred             EEEEcCCCCceEEEEeCCCeEEEEeCC-CCeEEEEECCCCeEeeecCcccccccCCce-----------------eEEEE
Confidence            334444555668999996666666664 5899999999998887     344677666                 59999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCce
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGI  228 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~  228 (622)
                      +|+++++++++.|+.|++||+.+++....+..+.           ..+.+++|+|++++++++ +.++.|++||+.+++.
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG-----------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS-----------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC-----------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            9999999999999999999999988777766443           347899999999988555 4799999999999988


Q ss_pred             EEEeccCCcCeeEEEEcCCCCEEEEEe--------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         229 AKIISAHMHPVCSISWSRNGYKIISAS--------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      +..+..+ ..+.+++|+|++++|++++        .|+.|++||+.+++....+.+...+.+++|+|+++.++++++.++
T Consensus       247 ~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          247 IRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             EEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             EEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCC
Confidence            8888765 4589999999999999988        588999999999998888877778999999999998999999999


Q ss_pred             cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---------------CCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---------------KGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                      .+++||+.+......+. +...+..++|+|+|+++++++.               ||.|++||+.+++.+..+..+ ..+
T Consensus       326 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~  403 (433)
T 3bws_A          326 KIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQP  403 (433)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSE
T ss_pred             EEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCC
Confidence            99999999877766665 5667889999999999988876               579999999999998888764 678


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110         366 KSIEFARRGNCLLVNTG-DRLIRVYNHQ  392 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~-d~~i~i~d~~  392 (622)
                      .+++|+|+|++|++++. |+.|++|++.
T Consensus       404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          404 TGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            99999999999998875 9999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.3e-33  Score=286.34  Aligned_cols=268  Identities=17%  Similarity=0.321  Sum_probs=237.8

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      ..+.|++|  ++++|++|+.+ |.|++||+.+++....+.+|.+.|                 ++++|  ++++|++|+.
T Consensus       134 ~~v~~~~~--d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v-----------------~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          134 KGVYCLQY--DDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSV-----------------LCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCEEEEEC--CSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCE-----------------EEEEC--CSSEEEEEET
T ss_pred             CcEEEEEE--CCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcE-----------------EEEEE--CCCEEEEEcC
Confidence            34555554  89999999975 999999999999999999999988                 48888  7889999999


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE---EEeccCCcC
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA---KIISAHMHP  238 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~  238 (622)
                      ||.|++||+.+++....+..|.           ..|.+++|++  .++++|+.||.|++||+.++...   ..+.+|...
T Consensus       192 dg~i~vwd~~~~~~~~~~~~h~-----------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  258 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTLIHHC-----------EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  258 (435)
T ss_dssp             TSCEEEEESSSCCEEEEECCCC-----------SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             CCeEEEEECCCCcEEEEEcCCC-----------CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence            9999999999998888877664           3488999974  59999999999999999987755   677899999


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      |.+++|  ++++|++++.||.|++||+++++.+..+. +...+.++.+++   .++++++.|+.+++||++++..+..+.
T Consensus       259 v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          259 VNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             EEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence            999999  78899999999999999999999998888 778999999953   378999999999999999999999999


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc---------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE---------LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      .|...+.++++  ++.++++|+.||.|++||+.+++         ++..+..|...|.+++|  ++++|++++.||.|++
T Consensus       334 ~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i  409 (435)
T 1p22_A          334 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI  409 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred             CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence            99999999988  78899999999999999997766         88899999999999999  7888999999999999


Q ss_pred             Eeccc
Q psy2110         389 YNHQE  393 (622)
Q Consensus       389 ~d~~~  393 (622)
                      ||+..
T Consensus       410 wd~~~  414 (435)
T 1p22_A          410 WDFLN  414 (435)
T ss_dssp             EC---
T ss_pred             EECCC
Confidence            99984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.3e-34  Score=277.44  Aligned_cols=246  Identities=15%  Similarity=0.227  Sum_probs=204.0

Q ss_pred             EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccc
Q psy2110         119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISL  196 (622)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  196 (622)
                      .+.+|.+.|                 ++++|+|+|++||+|+.|++|+|||+.++.  .+..+..|.           ..
T Consensus         8 ~~~~H~~~V-----------------~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~-----------~~   59 (316)
T 3bg1_A            8 VDTSHEDMI-----------------HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE-----------GP   59 (316)
T ss_dssp             ------CCE-----------------EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS-----------SC
T ss_pred             ecccccCeE-----------------EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC-----------cc
Confidence            456788887                 599999999999999999999999998764  344555554           35


Q ss_pred             eEEEEECC--CCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcE
Q psy2110         197 AVTCAFNK--RGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       197 v~~~~~s~--~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      |.+++|++  ++++|++++.|++|++||+.++.  ....+.+|...|++++|+|+  +.+|++++.|+.|++||++++..
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~  139 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ  139 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence            89999986  48999999999999999998874  56678899999999999997  78999999999999999987643


Q ss_pred             EE---EEe-CCCCeEEEEEeCCC----------------CeEEEEeeCCCcEEEEEecCC---ceeecccCCCCceEEEE
Q psy2110         271 EQ---KYR-FPSPILKVQFHPRN----------------DHMFLVCPMRHAAVLVDTDGD---HQIVPIDEDSDLSIVAS  327 (622)
Q Consensus       271 ~~---~~~-~~~~v~~~~~~~~~----------------~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~  327 (622)
                      ..   .+. |...+.+++|+|+.                ..++++++.|+.+++||++..   .....+..|...|.+++
T Consensus       140 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          140 WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence            22   222 66789999999974                247899999999999999754   45677889999999999


Q ss_pred             EeeCC----CEEEEEecCCeEEEEeCCCc---c-EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         328 FDRRG----QHVVTGNSKGKVLVLSCPAL---E-LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       328 ~~~~~----~~l~~~~~dg~i~i~d~~~~---~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |+|++    ++|++++.||+|++|++.+.   + ....+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99986    89999999999999998762   1 223456788999999999999999999999999999976

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-33  Score=278.52  Aligned_cols=274  Identities=12%  Similarity=0.076  Sum_probs=235.4

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCC-E
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGT-L  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~-~  155 (622)
                      +...+.+++|+|++++|++++.+ +.|++|++.+++   ....+.+|...+                 ++++|+|+++ +
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~   71 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPL-----------------LCCNFIDNTDLQ   71 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCE-----------------EEEEEEESSSEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCce-----------------EEEEECCCCCcE
Confidence            44568899999999999999975 999999998877   345566888887                 5999999999 9


Q ss_pred             EEEeeCCCcEEEEec-CCccccccccc--ccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-------
Q psy2110         156 LAVGCNDGRIVLWDF-LTRGIAKIISA--HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-------  225 (622)
Q Consensus       156 l~s~~~dg~i~vw~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-------  225 (622)
                      |++|+.||.|++|++ .+++. ..+..  |.           ..|.+++|+| +++|++++.|+.|++||+.+       
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~-----------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF-QALTNNEAN-----------LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE-EECBSCCCC-----------SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EEEEcCCCeEEEEEeccCCce-EeccccCCC-----------CceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence            999999999999999 77654 33433  32           3589999999 99999999999999999987       


Q ss_pred             --CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEE---EEEeCCCCeEEEEEeC-CCCeEEEEeeC
Q psy2110         226 --RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECE---QKYRFPSPILKVQFHP-RNDHMFLVCPM  298 (622)
Q Consensus       226 --~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~~~~~~~~  298 (622)
                        ++++..+. |...|.+++|++++  |++++.|+.|++||+++ +...   ....+...+.+++|+| ++. ++++++.
T Consensus       139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~  214 (342)
T 1yfq_A          139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSI  214 (342)
T ss_dssp             EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEET
T ss_pred             ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEec
Confidence              77666666 88999999999887  99999999999999998 5432   2333778999999999 876 6788889


Q ss_pred             CCcEEEEEecCC------ceeecccCCCC---------ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC-C
Q psy2110         299 RHAAVLVDTDGD------HQIVPIDEDSD---------LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS-T  362 (622)
Q Consensus       299 ~~~i~~~d~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~  362 (622)
                      ++.+++|+++..      .....+..|..         .+.+++|+|++++|++++.||.|++||+.+++++..+..| .
T Consensus       215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~  294 (342)
T 1yfq_A          215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE  294 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccC
Confidence            999999999876      66666666654         8999999999999999999999999999999999999998 9


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCc-EEEEe
Q psy2110         363 TAIKSIEFARRGNCLLVNTGDRL-IRVYN  390 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~d~~-i~i~d  390 (622)
                      ..|.+++  |++++|++++.|+. .+.|.
T Consensus       295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          295 DSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCceEec--CCCCeEEEEecCCccccccc
Confidence            9999999  99999999999998 55554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.2e-34  Score=287.47  Aligned_cols=282  Identities=17%  Similarity=0.258  Sum_probs=234.0

Q ss_pred             EEEEECCCCCEEE-EEeCCCeEEEEEcCCCc----eEEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---
Q psy2110         198 VTCAFNKRGTLLA-VGCNDGRIVLWDFLTRG----IAKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTG---  268 (622)
Q Consensus       198 ~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~---  268 (622)
                      ..++++|+...++ +++.+|.|++|++....    ....+.+|.+.|++++|+| ++++|++++.||.|++||+.++   
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence            3478888765444 47889999999996542    3456778999999999999 9999999999999999999987   


Q ss_pred             ----cEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEecC
Q psy2110         269 ----ECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNSK  341 (622)
Q Consensus       269 ----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d  341 (622)
                          +.+..+. |...|.+++|+|++..++++++.|+.+++||+.+...+..+  ..|...+.+++|+|++++|++++.|
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence                4556665 88999999999999778999999999999999999888888  7899999999999999999999999


Q ss_pred             CeEEEEeCCCccEEEEE-ecCCCC-EEEEEEcCCCCEEEEE---eCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110         342 GKVLVLSCPALELKASF-KASTTA-IKSIEFARRGNCLLVN---TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT  416 (622)
Q Consensus       342 g~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (622)
                      |.|++||+++++.+..+ ..|... +.+++|+|++++|+++   +.|+.|++||++..        ..++... ......
T Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~--------~~~~~~~-~~~~~~  268 (402)
T 2aq5_A          198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL--------EEPLSLQ-ELDTSS  268 (402)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC--------SSCSEEE-ECCCCS
T ss_pred             CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc--------cCCceEE-eccCCC
Confidence            99999999999999988 678766 8999999999999998   78999999999841        1112222 222334


Q ss_pred             eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee-EEEEecCC-CCceeEEEECCCCCEEEEEeCCcEEEeecCC
Q psy2110         417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-VKILHGTK-GELLLDVVWHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~-~~~~~~~~-~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      .+.+++|+|++++|++++..|+.|++|++.+++. +..+..+. ...|.+++|+|++.++++ +++.+++|++..
T Consensus       269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~  342 (402)
T 2aq5_A          269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHE  342 (402)
T ss_dssp             SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred             ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCC
Confidence            5678899999999976554599999999998874 55555442 234999999999998764 477999999854

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.3e-33  Score=275.74  Aligned_cols=296  Identities=12%  Similarity=0.135  Sum_probs=236.6

Q ss_pred             ecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCCCeEEEEEcCC-CceE-EEeccCCcCeeEEE
Q psy2110         169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLT-RGIA-KIISAHMHPVCSIS  243 (622)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~  243 (622)
                      +....+.+..+..|.           ..|.+++|+|+   |++|++|+.||.|++|++.+ +..+ ..+.+|...|++++
T Consensus        25 ~~~~~~~~~~~~~h~-----------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~   93 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPD-----------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVC   93 (368)
T ss_dssp             SSCTTCCEECSSCCS-----------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEE
T ss_pred             CCCCcceeEeccCCC-----------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEE
Confidence            344444555555554           45999999999   69999999999999999997 5544 78889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEE--eCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQF--HPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD  321 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  321 (622)
                      |+|++++|++++.||.|++||+.+++......+...|.+++|  +|++. ++++++.++.+++||+++...+..+..+. 
T Consensus        94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-  171 (368)
T 3mmy_A           94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE-  171 (368)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS-
T ss_pred             ECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC-
Confidence            999999999999999999999999999988889999999999  77665 68889999999999999888777777655 


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCE----EEEEeCCCcEEEEeccccc
Q psy2110         322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNC----LLVNTGDRLIRVYNHQEVL  395 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~~~d~~i~i~d~~~~~  395 (622)
                      .+.++  ...+..+++++.++.+.+|+++.........  .+...+.++++.++...    +++++.|+.|++|+++...
T Consensus       172 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          172 RCYCA--DVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             CEEEE--EEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             CceEE--EecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            33344  4445688999999999999998765443322  34455667777665554    9999999999999998411


Q ss_pred             ccCCCCCCCcceeeeccccc----------eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110         396 NAGKDGDPEPIQKLQDLVNK----------TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDV  465 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v  465 (622)
                      .      ...+..+..+...          ..+.+++|+|++++|++++. ||.|++||+.+++++..+.+|... |+++
T Consensus       250 ~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~-v~~~  321 (368)
T 3mmy_A          250 P------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTSEQLDQP-ISAC  321 (368)
T ss_dssp             H------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSC-EEEE
T ss_pred             c------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEecCCCCC-ceEE
Confidence            0      0233333333221          15789999999999999997 999999999999999999998876 9999


Q ss_pred             EECCCCCEEEEEe-CCcEEEeec
Q psy2110         466 VWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       466 ~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      +|+|++++|++++ |+..+.|++
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGG
T ss_pred             EECCCCCeEEEEecccccccccc
Confidence            9999999999998 876555554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-33  Score=278.12  Aligned_cols=251  Identities=15%  Similarity=0.245  Sum_probs=213.8

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCCccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGAL  191 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~  191 (622)
                      |+++..+.+|.+.|                 ++++|+|++++|++|+.||.|++|++.  +++....+..|.        
T Consensus         1 G~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------   55 (379)
T 3jrp_A            1 GSMVVIANAHNELI-----------------HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--------   55 (379)
T ss_dssp             ----CCEEECCCCE-----------------EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--------
T ss_pred             CCccEEecCCcccE-----------------EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--------
Confidence            45667788999988                 599999999999999999999999998  555555666554        


Q ss_pred             ccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEEC
Q psy2110         192 DCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDV  265 (622)
Q Consensus       192 ~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~  265 (622)
                         ..|.+++|+++  +++|++++.||.|++||+.+++  ....+..|...|.+++|+|+  +.+|++++.|+.|++||+
T Consensus        56 ---~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           56 ---GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  132 (379)
T ss_dssp             ---SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             ---CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence               35899999987  9999999999999999999987  67788889999999999999  999999999999999999


Q ss_pred             CCCcE---EEEEeCCCCeEEEEEeCC------------CCeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEE
Q psy2110         266 LTGEC---EQKYRFPSPILKVQFHPR------------NDHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVA  326 (622)
Q Consensus       266 ~~~~~---~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~  326 (622)
                      .++..   .....+...|.+++|+|.            ...++++++.++.+++||++...    ....+..|...+.++
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            98743   223348889999999995            34578899999999999998654    345677899999999


Q ss_pred             EEeeC---CCEEEEEecCCeEEEEeCCCcc---EEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         327 SFDRR---GQHVVTGNSKGKVLVLSCPALE---LKASF--KASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       327 ~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +|+|+   +++|++++.||.|++||+.++.   ....+  ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99999   8999999999999999998864   22222  2488899999999999999999999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.5e-31  Score=269.10  Aligned_cols=279  Identities=10%  Similarity=0.117  Sum_probs=234.1

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEe
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      .++++++.|+.|++||+.+++....+..+.            .+.+++|+|+|++| ++++.++.|++||+.+++.+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~   70 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC------------CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence            467888999999999999988877766542            37899999999977 56668999999999999998888


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         233 SAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ..+. .+.+++|+|++++|+.++ .++.|++||+.+++.+..+.....+.+++|+|+++.++++++.++.+++||+.+.+
T Consensus        71 ~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  149 (391)
T 1l0q_A           71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA  149 (391)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            7665 899999999999886555 56999999999999999998888999999999999888899999999999999888


Q ss_pred             eeecccCCCCceEEEEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe---CCCcEE
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT---GDRLIR  387 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~  387 (622)
                      .+..+..+ ..+..++|+|+++++ ++++.++.|++||+++++.+..+.. ...+.+++|+|++++|++++   .++.|+
T Consensus       150 ~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~  227 (391)
T 1l0q_A          150 VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVS  227 (391)
T ss_dssp             EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred             EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence            77776655 446899999999988 5677889999999999988877764 46789999999999999887   689999


Q ss_pred             EEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC
Q psy2110         388 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG  459 (622)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  459 (622)
                      +||+..         ...+..+..+   ..+.+++|+|+|++|++++..++.|++||+.+++.+..+..+..
T Consensus       228 ~~d~~~---------~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~  287 (391)
T 1l0q_A          228 MIDTGT---------NKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN  287 (391)
T ss_dssp             EEETTT---------TEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             EEECCC---------CeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence            999983         2344444432   23567899999999865544589999999999999998877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=3.6e-32  Score=307.13  Aligned_cols=456  Identities=11%  Similarity=0.071  Sum_probs=317.3

Q ss_pred             CcceEEEEccCCcEEEeccCC------CeEEEEecccccee---------------------cccCceEEeecCC-----
Q psy2110           2 DLSIVASFDRRGQHVVTGNSK------GKVLVLSCPALELK---------------------ASRGNCLLVNTGD-----   49 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~d------g~v~vwd~~~~~~~---------------------~~~~~~l~~~~~d-----   49 (622)
                      ..|.+++|||||++||+++.+      ..|.+|++.+++..                     +++|+.+++++.+     
T Consensus        53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~  132 (1045)
T 1k32_A           53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS  132 (1045)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred             CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence            458899999999999987543      47999998664221                     3466666666643     


Q ss_pred             -ceEEEeechhhhhcCCCCCCcc-c------------------------------------hhhhh-hccccceeEEEEc
Q psy2110          50 -RLIRVYNHQEVLNAGKDGDPEP-I------------------------------------QKLQD-LVNKTMWKKCCFS   90 (622)
Q Consensus        50 -~~i~~w~~~~~~~~~~~~~~~~-~------------------------------------~~~~~-~~~~~~~~~~~~s   90 (622)
                       ..+.+|++.+............ .                                    ..... ..+...+.++.|+
T Consensus       133 ~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s  212 (1045)
T 1k32_A          133 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV  212 (1045)
T ss_dssp             CCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred             cceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe
Confidence             3567777755432111111000 0                                    00000 1223445678888


Q ss_pred             CCCCEEEEecCCCCeEEEEEcCC-CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEe
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  169 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~  169 (622)
                      ++ ..+++++ .++.+.||.+.. +.....+..|.. +                 ..++|+|||++|+++. ++.|++|+
T Consensus       213 ~d-~l~~~~~-~dg~~~l~~~~~~g~~~~~l~~~~~-~-----------------~~~~~SpDG~~la~~~-~~~i~~~d  271 (1045)
T 1k32_A          213 GH-RIYFITD-IDGFGQIYSTDLDGKDLRKHTSFTD-Y-----------------YPRHLNTDGRRILFSK-GGSIYIFN  271 (1045)
T ss_dssp             TT-EEEEEEC-TTSSCEEEEEETTSCSCEECCCCCS-S-----------------CEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred             CC-EEEEEEe-ccCceEEEEEeCCCCcceEecCCCC-c-----------------ceeeEcCCCCEEEEEe-CCEEEEec
Confidence            88 4444444 458888998753 445556665553 2                 3779999999999884 89999999


Q ss_pred             cCCcccccccccccCCCcccccccccceEEEEEC-CCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCc-CeeEEEEcCC
Q psy2110         170 FLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMH-PVCSISWSRN  247 (622)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~  247 (622)
                      +.... +..+..+..............+..++|+ |+|++|++++ ++.|.+|++.++... .+..|.. .+..++|+ |
T Consensus       272 ~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          272 PDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             TTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-S
T ss_pred             CCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-C
Confidence            84433 2233332111111111112347789999 9999999887 789999999877654 4667777 89999999 9


Q ss_pred             CCEEEEEeCCCcEE-EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEE
Q psy2110         248 GYKIISASTDNNVC-IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA  326 (622)
Q Consensus       248 ~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  326 (622)
                      |+.|++++.++.+. +|++.+++......+...+..++|+|+++. +++++.++.+++||+.++........+...+..+
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            99999999888888 999988876655556678999999999985 5566788899999999887776666788888899


Q ss_pred             EEeeCCCEEEEEecCC----------eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccc
Q psy2110         327 SFDRRGQHVVTGNSKG----------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLN  396 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~  396 (622)
                      +|+|+|++|++++.++          .|++||+.+++ ...+..|...+.+++|+|+|++|++++.++...+|+......
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence            9999999998887654          89999999887 667778888899999999999999999888777776542111


Q ss_pred             cCC----------C-CCC-----------------------CcceeeeccccceeeeeEEEcCCCCeEEE----------
Q psy2110         397 AGK----------D-GDP-----------------------EPIQKLQDLVNKTMWKKCCFSGDGEYVCA----------  432 (622)
Q Consensus       397 ~~~----------~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~----------  432 (622)
                      ...          . ...                       ..+..+.  .....+..++++|||+++++          
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~--~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~  583 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN--VDPGDYRMIIPLESSILIYSVPVHGEFAAY  583 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS--CCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC--CCCCChhheEEcCCCeEEEEecccCccccc
Confidence            000          0 000                       0011111  12234567899999987875          


Q ss_pred             --eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecCCcc
Q psy2110         433 --GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVE  491 (622)
Q Consensus       433 --~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~~~  491 (622)
                        .......|++||+.+++.. .+.   . .+..++|+|||+.|++++++.|++|++....
T Consensus       584 ~~~~~~~~~l~~~d~~~~~~~-~l~---~-~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~  639 (1045)
T 1k32_A          584 YQGAPEKGVLLKYDVKTRKVT-EVK---N-NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  639 (1045)
T ss_dssp             HHCCCCCEEEEEEETTTCCEE-EEE---E-EEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             ccccCCCceEEEEECCCCcEE-Eee---c-CcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence              1122557999999988754 333   2 2889999999999999986689999997544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.7e-33  Score=273.71  Aligned_cols=284  Identities=15%  Similarity=0.178  Sum_probs=214.7

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CC
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RG  153 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~  153 (622)
                      +...+.+++|+|++++|++++.+ |.|++||+.++    +....+.+|...|                 ++++|+|  ++
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~d~   71 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSI-----------------VAIDWASPEYG   71 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCE-----------------EEEEECCGGGC
T ss_pred             cccceeEEEEcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcE-----------------EEEEEcCCCCC
Confidence            44568899999999999999975 99999999876    4677788999988                 5999999  69


Q ss_pred             CEEEEeeCCCcEEEEecCCccc---------ccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEE
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGI---------AKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd  222 (622)
                      ++|++++.||.|++||+.++..         ...+..+.           ..|.+++|+|+  +++|++++.|+.|++||
T Consensus        72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----------GSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC-----------CceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            9999999999999999988632         33333332           45899999999  99999999999999999


Q ss_pred             cCCCceEEEec-------------cCCcCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCcE--EEEEe-CCCCeEEE
Q psy2110         223 FLTRGIAKIIS-------------AHMHPVCSISWSRN---GYKIISASTDNNVCIWDVLTGEC--EQKYR-FPSPILKV  283 (622)
Q Consensus       223 ~~~~~~~~~~~-------------~~~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~  283 (622)
                      +.+++.+..+.             .|...+.+++|+|+   +.+|++++.++.+.+|+...++.  ...+. |...|.++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  220 (351)
T 3f3f_A          141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI  220 (351)
T ss_dssp             CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred             CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence            98876544332             67889999999997   89999999999999998888775  34443 77899999


Q ss_pred             EEeCCCC---eEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE----ecCCeEEEEeCCCccEEE
Q psy2110         284 QFHPRND---HMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG----NSKGKVLVLSCPALELKA  356 (622)
Q Consensus       284 ~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~  356 (622)
                      +|+|++.   .++++++.|+.+++||++....................++....+..+    .....+.+|+....+.+.
T Consensus       221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (351)
T 3f3f_A          221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS  300 (351)
T ss_dssp             EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred             EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence            9999984   689999999999999998765444443333333333344443333333    334456677777778888


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+.+|...|++++|+|++++|++++.|+.|++|++.
T Consensus       301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            999999999999999999999999999999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.5e-32  Score=276.34  Aligned_cols=276  Identities=12%  Similarity=0.129  Sum_probs=232.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE-----EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-----IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      +.+++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|+++++++++++.|+.|++||+.+++..
T Consensus       125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~  204 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK  204 (433)
T ss_dssp             BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence            4578999977788888888999999999998877     45578889999999999999999999999999999999988


Q ss_pred             EEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe--------cCC
Q psy2110         272 QKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN--------SKG  342 (622)
Q Consensus       272 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg  342 (622)
                      ..+. +...+.+++|+|+++.+++++..++.+++||+++...+..+..+ ..+..++|+|+|+++++++        .+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg  283 (433)
T 3bws_A          205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGG  283 (433)
T ss_dssp             EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence            8887 67789999999999988888888999999999988777766654 4588999999999999887        488


Q ss_pred             eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE
Q psy2110         343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCL-LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC  421 (622)
Q Consensus       343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (622)
                      .|++||+.+++.+..+ .+...+.+++|+|+++.+ ++++.++.|++||+..         ...+..+.   ....+.++
T Consensus       284 ~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---------~~~~~~~~---~~~~~~~~  350 (433)
T 3bws_A          284 RLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---------KKVQKSIP---VFDKPNTI  350 (433)
T ss_dssp             EEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT---------TEEEEEEE---CSSSEEEE
T ss_pred             eEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC---------CcEEEEec---CCCCCCeE
Confidence            9999999998877765 344578999999999866 4557899999999983         23333332   23445688


Q ss_pred             EEcCCCCeEEEeeCC--------------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEe
Q psy2110         422 CFSGDGEYVCAGSAR--------------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLW  485 (622)
Q Consensus       422 ~~spdg~~l~~~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw  485 (622)
                      +|+|+|++|++++..              ||.|++||+.+++.+..+..+. . +.+++|+|++++|++++  |+.|++|
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-~~~~~~s~dg~~l~~~~~~d~~i~v~  428 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-PTGLDVSPDNRYLVISDFLDHQIRVY  428 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-EEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-CceEEEcCCCCEEEEEECCCCeEEEE
Confidence            999999999888763              4699999999999999888754 3 99999999999988765  8999999


Q ss_pred             ecC
Q psy2110         486 AQN  488 (622)
Q Consensus       486 ~~~  488 (622)
                      +++
T Consensus       429 ~~~  431 (433)
T 3bws_A          429 RRD  431 (433)
T ss_dssp             EET
T ss_pred             Eec
Confidence            985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.1e-31  Score=268.14  Aligned_cols=332  Identities=10%  Similarity=0.111  Sum_probs=257.4

Q ss_pred             EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecCCc
Q psy2110          95 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTR  173 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~~~  173 (622)
                      .+++++. ++.|++||+.+++.+..+.+|.. +                 .+++|+|++++| ++++.|+.|++||+.++
T Consensus         4 l~vs~~~-d~~v~v~d~~~~~~~~~~~~~~~-~-----------------~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~   64 (391)
T 1l0q_A            4 AYIANSE-SDNISVIDVTSNKVTATIPVGSN-P-----------------MGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (391)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEEECSSS-E-----------------EEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEcCC-CCEEEEEECCCCeEEEEeecCCC-c-----------------ceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence            4556665 59999999999999999988865 3                 499999999977 67778999999999998


Q ss_pred             ccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEE-
Q psy2110         174 GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI-  251 (622)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-  251 (622)
                      +....+..+.            .+.+++|+|++++|+++ +.++.|++||+.+++.+..+..| ..+.+++|+|++++| 
T Consensus        65 ~~~~~~~~~~------------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           65 NVIATVPAGS------------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEEECSS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             eEEEEEECCC------------CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            8777665442            47899999999988655 46799999999999988887755 578999999999987 


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC
Q psy2110         252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR  331 (622)
Q Consensus       252 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  331 (622)
                      ++++.++.|++||+.+++....+.....+..++|+|+++.+++++..++.+++||+++......+.. ...+.+++|+|+
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~  210 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE  210 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC
Confidence            6777799999999999999999888888899999999998888889999999999998876665553 457889999999


Q ss_pred             CCEEEEEe---cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         332 GQHVVTGN---SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCL-LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       332 ~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      ++++++++   .++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+...         ..+.
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~---------~~~~  280 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN---------TITA  280 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEE
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC---------cEEE
Confidence            99999888   68999999999999988888764 57899999999988 45577999999999842         2222


Q ss_pred             eeeccccc-------------eeeeeEEEcCCC----------CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110         408 KLQDLVNK-------------TMWKKCCFSGDG----------EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD  464 (622)
Q Consensus       408 ~~~~~~~~-------------~~~~~~~~spdg----------~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  464 (622)
                      .+..+...             .......|+.+.          -.+...+. +..+++|++.+|...    .+.   -..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~~~g~~~----~~~---~~~  352 (391)
T 1l0q_A          281 TMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSK-DATEWKWDFGDGSSS----KKQ---NPT  352 (391)
T ss_dssp             EEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCB-SCSEEEEECSSSCEE----CSS---SCE
T ss_pred             EEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCC-CceEEEEECCCCccc----CcC---CCe
Confidence            22111110             000111233221          12333343 778999999887641    222   223


Q ss_pred             EEECCCCCEEEEE
Q psy2110         465 VVWHPVRPIIASI  477 (622)
Q Consensus       465 v~~sp~~~~l~s~  477 (622)
                      ..|+|.|.+.++.
T Consensus       353 ~~~~~~g~y~~~~  365 (391)
T 1l0q_A          353 HTYSETGIYTVRL  365 (391)
T ss_dssp             ECCSSCEEEEEEE
T ss_pred             EEeCCCceEEEEE
Confidence            6799999877654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3e-32  Score=278.07  Aligned_cols=294  Identities=13%  Similarity=0.229  Sum_probs=230.1

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ++++|  ++++|++|+.||.|++||+.+++....+..|.           ..|.+++|  ++++|++|+.||.|++||+.
T Consensus       137 ~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-----------~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          137 YCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-----------GSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCS-----------SCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-----------CcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            46665  79999999999999999999998888887765           34888888  78899999999999999999


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE---EEEe-CCCCeEEEEEeCCCCeEEEEeeCCC
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE---QKYR-FPSPILKVQFHPRNDHMFLVCPMRH  300 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~  300 (622)
                      +++.+..+.+|...|.+++|+  +..|++++.||.|++||+.+++..   ..+. +...|.+++|.  +. ++++++.++
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg  276 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDR  276 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTS
T ss_pred             CCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCC
Confidence            999999999999999999997  459999999999999999988754   3333 77899999993  33 788999999


Q ss_pred             cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110         301 AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       301 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      .+++||+++...+..+..|...+.++.+  +++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|+++
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            9999999999999999999999998888  5789999999999999999999999999999999999999  78899999


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                      +.||.|++||+..............+..+..+  ...+.+++|  ++++|++++. ||.|++||+.+...........  
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~--  425 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSH-DDTILIWDFLNDPAAQAEPPRS--  425 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCS-SSEEEEEC----------------
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeC-CCEEEEEECCCCCCcccCCCCC--
Confidence            99999999999753322111111134444433  345677888  7899999997 9999999998766544433222  


Q ss_pred             ceeEEEECC
Q psy2110         461 LLLDVVWHP  469 (622)
Q Consensus       461 ~v~~v~~sp  469 (622)
                      +...+.|.+
T Consensus       426 ~~~~~~~~~  434 (435)
T 1p22_A          426 PSRTYTYIS  434 (435)
T ss_dssp             ---------
T ss_pred             Cccceeeec
Confidence            245555543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=277.03  Aligned_cols=288  Identities=15%  Similarity=0.239  Sum_probs=236.5

Q ss_pred             EEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC---CCEEEEeeCCCcEEEEecCC-cccc-ccccccc
Q psy2110         109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLT-RGIA-KIISAHM  183 (622)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~s~~~dg~i~vw~~~~-~~~~-~~~~~~~  183 (622)
                      |+....+.+..+.+|.+.|                 ++++|+|+   |++|++|+.||.|++|++.+ +... ..+..|.
T Consensus        24 ~~~~~~~~~~~~~~h~~~v-----------------~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~   86 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSI-----------------GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT   86 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCE-----------------EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS
T ss_pred             CCCCCcceeEeccCCCCce-----------------EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc
Confidence            4455667788889999998                 59999999   59999999999999999987 4443 4454444


Q ss_pred             CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEE--cCCCCEEEEEeCCCcEE
Q psy2110         184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISW--SRNGYKIISASTDNNVC  261 (622)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~d~~i~  261 (622)
                                 ..|.+++|+|++++|++++.||.|++||+.+++... +..|...|.+++|  ++++++|++++.|+.|+
T Consensus        87 -----------~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A           87 -----------GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK  154 (368)
T ss_dssp             -----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             -----------CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence                       358999999999999999999999999999988766 5679999999999  89999999999999999


Q ss_pred             EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec--ccCCCCceEEEEEeeCCCE----E
Q psy2110         262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP--IDEDSDLSIVASFDRRGQH----V  335 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----l  335 (622)
                      +||+++++.+..+.....+.++.+.++   .++++..++.+.+|+++.......  .........++++.++...    +
T Consensus       155 vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          155 FWDTRSSNPMMVLQLPERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EECSSCSSCSEEEECSSCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             EEECCCCcEEEEEecCCCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            999999999999998888888888764   577888899999999987543322  2233445566666666554    9


Q ss_pred             EEEecCCeEEEEeCCCc---cEEEEEecCCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCC
Q psy2110         336 VTGNSKGKVLVLSCPAL---ELKASFKASTT------------AIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKD  400 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  400 (622)
                      ++++.+|.|++|+++..   ..+..+..|..            .|++++|+|++++|++++.|+.|++||+.        
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~--------  303 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD--------  303 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT--------
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC--------
Confidence            99999999999999887   56677777765            79999999999999999999999999998        


Q ss_pred             CCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         401 GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                       ....+..+..+  ...+.+++|+|+|++|++++. |+..
T Consensus       304 -~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s~-d~~~  339 (368)
T 3mmy_A          304 -ARTKLKTSEQL--DQPISACCFNHNGNIFAYASS-YDWS  339 (368)
T ss_dssp             -TTEEEEECCCC--SSCEEEEEECTTSSCEEEEEC-CCST
T ss_pred             -CCcEEEEecCC--CCCceEEEECCCCCeEEEEec-cccc
Confidence             33444444432  456788999999999999997 5433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=7.7e-33  Score=273.70  Aligned_cols=300  Identities=10%  Similarity=0.075  Sum_probs=217.4

Q ss_pred             EEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCc
Q psy2110         108 IWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEF  187 (622)
Q Consensus       108 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  187 (622)
                      +|++.+.+.+..+..|...|                 ++++|+|||++|++|+.++ +++|++.+++.......+     
T Consensus         3 i~s~~~~~~~~~~~~h~~~V-----------------~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-----   59 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPV-----------------TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-----   59 (355)
T ss_dssp             ----------------CCCC-----------------CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-----
T ss_pred             cccccccCCccccccCCCce-----------------EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-----
Confidence            56777778888888898888                 5999999999999998775 789998876554332211     


Q ss_pred             ccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q psy2110         188 DGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL  266 (622)
Q Consensus       188 ~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~  266 (622)
                              .+..+++.++++.+ ++++.++.|++||+.+++.+..+. |...|.+++|+++.  ++++ .++.|++||+.
T Consensus        60 --------~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~  127 (355)
T 3vu4_A           60 --------HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFG  127 (355)
T ss_dssp             --------CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESS
T ss_pred             --------CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECC
Confidence                    24567888888877 457778999999999999988887 66799999998764  4444 37899999999


Q ss_pred             CC-cEEEEEeCCCCeEEEEEeCCCCeEEEE-eeCCCcEEEEEecCCc----------------eeecccCCCCceEEEEE
Q psy2110         267 TG-ECEQKYRFPSPILKVQFHPRNDHMFLV-CPMRHAAVLVDTDGDH----------------QIVPIDEDSDLSIVASF  328 (622)
Q Consensus       267 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~  328 (622)
                      ++ +.+..+..  +...+++++  ..++++ ++.++.+++||+.+..                .+..+..|...|.+++|
T Consensus       128 ~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~  203 (355)
T 3vu4_A          128 NPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL  203 (355)
T ss_dssp             TTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred             CCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence            88 55554444  445566777  444554 7899999999998754                26778899999999999


Q ss_pred             eeCCCEEEEEecCCe-EEEEeCCCccEEEEEe-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC----
Q psy2110         329 DRRGQHVVTGNSKGK-VLVLSCPALELKASFK-A-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG----  401 (622)
Q Consensus       329 ~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----  401 (622)
                      +|+|++|++|+.||+ |++||+++++++..+. + |...|++++|+|++++|++++.|+.|++||+..........    
T Consensus       204 s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          204 NRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             CTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence            999999999999998 9999999999999998 5 99999999999999999999999999999997421110000    


Q ss_pred             -------CCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         402 -------DPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       402 -------~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                             .......+.... .......++|++||++|++++. ||.+++|++..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~-dg~~~~~~~~~  336 (355)
T 3vu4_A          284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH-TRMIETFKVVF  336 (355)
T ss_dssp             EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT-TTEEEEEEEEE
T ss_pred             eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC-CCeEEEEEEEc
Confidence                   000000000000 1112256899999999999997 99999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-33  Score=274.24  Aligned_cols=242  Identities=19%  Similarity=0.289  Sum_probs=200.9

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~  155 (622)
                      +...+.+++|+|+|++||+|+.| ++|+|||+.+++  .+..+.+|.+.|                 ++++|++  ++++
T Consensus        12 H~~~V~~v~~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V-----------------~~v~~~~~~~~~~   73 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPV-----------------WQVAWAHPMYGNI   73 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCE-----------------EEEEECCGGGSSC
T ss_pred             ccCeEEEeeEcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccE-----------------EEEEeCCCCCCCE
Confidence            44567899999999999999975 999999998775  467899999998                 5999986  4899


Q ss_pred             EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCce---
Q psy2110         156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGI---  228 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~~---  228 (622)
                      |++|+.|++|++||+.++.  ....+..|.           ..|.+++|+|+  +.+|++|+.|+.|++|++.++..   
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEHAGHD-----------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEECCCS-----------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEccCCC-----------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            9999999999999998864  233333343           35889999998  78999999999999999987632   


Q ss_pred             EEEeccCCcCeeEEEEcCC-----------------CCEEEEEeCCCcEEEEECCCC---cEEEEEe-CCCCeEEEEEeC
Q psy2110         229 AKIISAHMHPVCSISWSRN-----------------GYKIISASTDNNVCIWDVLTG---ECEQKYR-FPSPILKVQFHP  287 (622)
Q Consensus       229 ~~~~~~~~~~v~~~~~s~~-----------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~  287 (622)
                      ...+.+|...|.+++|+|+                 +++|++++.|+.|++||++.+   ++...+. |...|.+++|+|
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp  222 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAP  222 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCC
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecC
Confidence            3456789999999999997                 468999999999999999765   3444454 788999999999


Q ss_pred             CC---CeEEEEeeCCCcEEEEEecCCc----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         288 RN---DHMFLVCPMRHAAVLVDTDGDH----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       288 ~~---~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ++   ..++++++.|+.+++|++....    ....+..|...+.+++|+|++++|++++.||.|++|+..
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            86   3589999999999999997621    223345678899999999999999999999999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-32  Score=278.49  Aligned_cols=295  Identities=12%  Similarity=0.043  Sum_probs=233.1

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---eEEEEeccCcceeEEEE-------------e-------------
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---LVKILHGTKGELLLDVV-------------E-------------  133 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~-------------~-------------  133 (622)
                      .+.+++|+|+|++|+++.  ++.|++||+.+|+   .+..+..+.........             .             
T Consensus         6 p~~~v~~s~dg~~l~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAII--KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCEEEECSSSSEEEEEE--TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cEEEEEecCCCCEEEEEe--CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            456899999999777775  3799999999999   77777655431000000             0             


Q ss_pred             -----------ecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecC--CcccccccccccCCCcccccccccceEE
Q psy2110         134 -----------FDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVT  199 (622)
Q Consensus       134 -----------~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~  199 (622)
                                 -.........|++++|+|++++| ++++.||.|++|++.  +++....+..+...         ..|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---------~~v~~  154 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS---------KRPNA  154 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS---------SCEEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC---------CCceE
Confidence                       00000112257899999999996 899999999999999  77777776543222         35899


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceEE----EeccCCcCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK----IISAHMHPVCSISWSRN---GYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       200 ~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      ++|+|++++|++++.+|.|++|++.++....    .+.+|...|++++|+|+   +++|++++.|+.|++||+.+++.+.
T Consensus       155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            9999999999999999999999998876544    77889999999999999   9999999999999999999998887


Q ss_pred             EEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-------------------------CCCCceEE
Q psy2110         273 KYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-------------------------EDSDLSIV  325 (622)
Q Consensus       273 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------------~~~~~~~~  325 (622)
                      .+.  |...|.+++|+ ++. ++++++.|+.|++||+.++..+..+.                         .....+..
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             eeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            743  78899999999 666 67888999999999999887665554                         22356889


Q ss_pred             EEEeeCCCEEEEEe-cCCeEEEEeC--CCc---cEEEEEecCCCCEEEEEEcCCCCEEEEE-eC------CCcEEEEecc
Q psy2110         326 ASFDRRGQHVVTGN-SKGKVLVLSC--PAL---ELKASFKASTTAIKSIEFARRGNCLLVN-TG------DRLIRVYNHQ  392 (622)
Q Consensus       326 ~~~~~~~~~l~~~~-~dg~i~i~d~--~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~------d~~i~i~d~~  392 (622)
                      ++|+|+++++++++ .++.|++|++  .++   +.+..+..+ ..|.+++|+|++ .+++. +.      +..|.+|.+.
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            99999999999998 8999999999  555   677778888 889999999964 44444 32      4568999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.9e-33  Score=280.90  Aligned_cols=277  Identities=15%  Similarity=0.230  Sum_probs=229.0

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcC-CCCEEEEee
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-RGTLLAVGC  160 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~  160 (622)
                      .++++|+...+++.+..+|.|+||++...    ..+..+.+|.+.|                 ++++|+| ++++|++|+
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V-----------------~~~~~~p~~~~~l~s~s  101 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPV-----------------LDIAWCPHNDNVIASGS  101 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCE-----------------EEEEECTTCTTEEEEEE
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCE-----------------EEEEeCCCCCCEEEEEe
Confidence            58999988777654334599999999654    2345677898888                 5999999 999999999


Q ss_pred             CCCcEEEEecCCcc-------cccccccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         161 NDGRIVLWDFLTRG-------IAKIISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       161 ~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      .||.|++|++.++.       ....+..|.           ..|.+++|+|++ ++|++++.|+.|++||+.+++.+..+
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHT-----------KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCS-----------SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCC-----------CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            99999999999873       344444443           358999999998 69999999999999999999999999


Q ss_pred             --ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e-CCCC-eEEEEEeCCCCeEEEEe---eCCCcEEE
Q psy2110         233 --SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-R-FPSP-ILKVQFHPRNDHMFLVC---PMRHAAVL  304 (622)
Q Consensus       233 --~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-v~~~~~~~~~~~~~~~~---~~~~~i~~  304 (622)
                        ..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ . +... +.++.|+|++. +++++   +.++.+++
T Consensus       171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVAL  249 (402)
T ss_dssp             CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEE
T ss_pred             ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEE
Confidence              889999999999999999999999999999999999998888 3 5444 89999999876 56666   68999999


Q ss_pred             EEecCCce-eec-ccCCCCceEEEEEeeCCCEEEE-EecCCeEEEEeCCCccE-EEEEec--CCCCEEEEEEcCCCCEEE
Q psy2110         305 VDTDGDHQ-IVP-IDEDSDLSIVASFDRRGQHVVT-GNSKGKVLVLSCPALEL-KASFKA--STTAIKSIEFARRGNCLL  378 (622)
Q Consensus       305 ~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~-~~~~~~--~~~~i~~~~~s~~~~~l~  378 (622)
                      ||+++... ... ...+...+..++|+|+++++++ |+.||.|++|++.+++. +..+..  |...|.+++|+|++.+++
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence            99987543 222 2245677899999999999975 55799999999998873 444443  458999999999999876


Q ss_pred             EEeCCCcEEEEeccc
Q psy2110         379 VNTGDRLIRVYNHQE  393 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~  393 (622)
                      +  .++.+++|++..
T Consensus       330 s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          330 N--KCEIARFYKLHE  342 (402)
T ss_dssp             G--GTEEEEEEEEET
T ss_pred             e--cceeEEEEEcCC
Confidence            4  567999999873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.3e-31  Score=302.43  Aligned_cols=376  Identities=13%  Similarity=0.115  Sum_probs=274.3

Q ss_pred             cceeEEEEcCCCCEEEEecCC-----CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSAR-----QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      ..+.+++|||||++||+++.+     +..|++|++.+++ ...+..|...+.       +   ....+..++|+|||+++
T Consensus        53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~-------~---~~~~~~~~~~SpDg~ll  121 (1045)
T 1k32_A           53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKST-------G---RRMFTDVAGFDPDGNLI  121 (1045)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEE-------T---TEECSEEEEECTTCCEE
T ss_pred             CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccc-------c---cccccccccCCCCCEEE
Confidence            345689999999999988643     2479999998776 567777776550       0   00011489999999977


Q ss_pred             EEeeCC------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------------CCeE
Q psy2110         157 AVGCND------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------------DGRI  218 (622)
Q Consensus       157 ~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------------dg~i  218 (622)
                      ++++.+      ..|.+|++.++........+              ...++|+| | ++++++.            +...
T Consensus       122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--------------~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~  185 (1045)
T 1k32_A          122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--------------ATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRG  185 (1045)
T ss_dssp             EEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--------------CSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCC
T ss_pred             EEECCcCCCcccceEEEEECCCCCeEEecCCC--------------cceeeeCC-C-EEEEeccCCCccccccccCCCcC
Confidence            777754      35778888776543322211              23466999 8 8888753            2345


Q ss_pred             EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCeEEEEEeCCCCeEEEEee
Q psy2110         219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      .+|....+.....+.+|...+.++.|+++ ..+++++.++.+.||.+.. +.....+.....+..++|+|+++.+++.  
T Consensus       186 ~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~--  262 (1045)
T 1k32_A          186 KIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS--  262 (1045)
T ss_dssp             EEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE--
T ss_pred             CEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE--
Confidence            66654443555667899999999999988 5666777788888987653 3334444444456778999999876655  


Q ss_pred             CCCcEEEEEecCCceeecccC-----------CCCceEEEEEe-eCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC-C
Q psy2110         298 MRHAAVLVDTDGDHQIVPIDE-----------DSDLSIVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTT-A  364 (622)
Q Consensus       298 ~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~  364 (622)
                      .++.+++|++... .+..+..           +...+..++|+ |+|+++++++ ++.+++|++.+++... +..|.. .
T Consensus       263 ~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~  339 (1045)
T 1k32_A          263 KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIR  339 (1045)
T ss_dssp             ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEE
T ss_pred             eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcce
Confidence            4889999998433 3334333           22357899999 9999998887 7899999998877554 566667 8


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEE-EEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE
Q psy2110         365 IKSIEFARRGNCLLVNTGDRLIR-VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW  443 (622)
Q Consensus       365 i~~~~~s~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw  443 (622)
                      +..++|+ +|+.|++++.+..+. +|++..          .....+.  .....+..++|||||++|++++. ++.|++|
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~----------~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~  405 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRT----------GKAEKFE--ENLGNVFAMGVDRNGKFAVVAND-RFEIMTV  405 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTT----------CCEEECC--CCCCSEEEEEECTTSSEEEEEET-TSEEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCC----------CCceEec--CCccceeeeEECCCCCEEEEECC-CCeEEEE
Confidence            9999999 999999999888888 888763          1122222  12244567899999999999987 8899999


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC----------cEEEeecCCccc-----------ccccCCCCc
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG----------VVSLWAQNQVEN-----------WSAFAPDFK  501 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg----------~v~iw~~~~~~~-----------~~~~s~~~~  501 (622)
                      |+.+++....+.+|.+. +.+++|+|+|++|++++ ++          .|++|++.+...           ..+|+|||+
T Consensus       406 d~~tg~~~~~~~~~~~~-v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          406 DLETGKPTVIERSREAM-ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             ETTTCCEEEEEECSSSC-CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSC
T ss_pred             ECCCCceEEeccCCCCC-ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCC
Confidence            99999988888788776 89999999999998887 54          899999874321           127999999


Q ss_pred             eecc
Q psy2110         502 ELDE  505 (622)
Q Consensus       502 ~l~~  505 (622)
                      .++.
T Consensus       485 ~l~~  488 (1045)
T 1k32_A          485 NLYY  488 (1045)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=274.07  Aligned_cols=278  Identities=12%  Similarity=0.110  Sum_probs=227.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eEEEecc--------------------------------------
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG---IAKIISA--------------------------------------  234 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~---~~~~~~~--------------------------------------  234 (622)
                      .+.+++|+++|++|+++ .++.|++||+.+++   .+..+..                                      
T Consensus         6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            46789999999977665 57899999999988   5555543                                      


Q ss_pred             ----------------CCcCeeEEEEcCCCCEE-EEEeCCCcEEEEECC--CCcEEEEE---eCCCCeEEEEEeCCCCeE
Q psy2110         235 ----------------HMHPVCSISWSRNGYKI-ISASTDNNVCIWDVL--TGECEQKY---RFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       235 ----------------~~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~  292 (622)
                                      |.+.|++++|+|++++| ++++.||.|++||+.  +++.+..+   .+...+.+++|+|++. +
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~  163 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-T  163 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-E
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-E
Confidence                            33379999999999996 888899999999999  88888777   4678999999999987 5


Q ss_pred             EEEeeCCCcEEEEEecCCceee----cccCCCCceEEEEEeeC---CCEEEEEecCCeEEEEeCCCccEEEE-EecCCCC
Q psy2110         293 FLVCPMRHAAVLVDTDGDHQIV----PIDEDSDLSIVASFDRR---GQHVVTGNSKGKVLVLSCPALELKAS-FKASTTA  364 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~  364 (622)
                      +++++.++.+++|++.+.....    .+..|...+.+++|+|+   +++|++++.|+.|++||+++++.+.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            6778889999999998765443    67788999999999999   99999999999999999999998877 5589999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc-----------------------ccceeeeeE
Q psy2110         365 IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-----------------------VNKTMWKKC  421 (622)
Q Consensus       365 i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~  421 (622)
                      |.+++|+ ++++|++++.|+.|++||+..         ...+..+...                       .....+..+
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  313 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKT---------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI  313 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTT---------CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCC---------CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence            9999999 999999999999999999983         2333333211                       122456788


Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEEC--CCC---eeEEEEecCCCCceeEEEECCCCCEEEEEe--C------CcEEEeecC
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEK--SVG---NLVKILHGTKGELLLDVVWHPVRPIIASIS--S------GVVSLWAQN  488 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--d------g~v~iw~~~  488 (622)
                      +|+|++++|++++..++.|+||++  .++   +.+..+.+| +. |.+++|+|++ ++++++  +      ..|.+|.+.
T Consensus       314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~-v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN-VISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC-EEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc-eEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            999999999999845899999999  666   777888888 44 9999999954 444443  2      347888874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-31  Score=267.77  Aligned_cols=249  Identities=17%  Similarity=0.281  Sum_probs=210.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcC--CCceEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCc-
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTGE-  269 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~-  269 (622)
                      ..|.+++|+|++++|++++.||.|++|++.  +++....+.+|...|++++|+++  +++|++++.||.|++||+.+++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~   91 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW   91 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce
Confidence            359999999999999999999999999998  56677889999999999999987  9999999999999999999987 


Q ss_pred             -EEEEEe-CCCCeEEEEEeCCC-CeEEEEeeCCCcEEEEEecCC--ceeecccCCCCceEEEEEee-------------C
Q psy2110         270 -CEQKYR-FPSPILKVQFHPRN-DHMFLVCPMRHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDR-------------R  331 (622)
Q Consensus       270 -~~~~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-------------~  331 (622)
                       ....+. +...|.+++|+|+. ..++++++.++.+++||++..  .....+..|...+.+++|+|             +
T Consensus        92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  171 (379)
T 3jrp_A           92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE  171 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred             eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence             455554 78899999999983 347889999999999999876  34456678889999999999             6


Q ss_pred             CCEEEEEecCCeEEEEeCCCcc----EEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110         332 GQHVVTGNSKGKVLVLSCPALE----LKASFKASTTAIKSIEFARR---GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE  404 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  404 (622)
                      +.++++++.||.|++||++++.    +...+..|...|.+++|+|+   +++|++++.|+.|++||+....      ...
T Consensus       172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~  245 (379)
T 3jrp_A          172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ------GPW  245 (379)
T ss_dssp             TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT------SCC
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC------ccc
Confidence            9999999999999999997654    55677889999999999999   8999999999999999998411      011


Q ss_pred             cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110         405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL  450 (622)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~  450 (622)
                      ....+........+.+++|+|+|++|++++. ||.|++|++..+..
T Consensus       246 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK  290 (379)
T ss_dssp             EEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTE
T ss_pred             eeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCc
Confidence            1122222234456788999999999999997 99999999885543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.5e-31  Score=270.52  Aligned_cols=239  Identities=13%  Similarity=0.241  Sum_probs=208.1

Q ss_pred             eeEEEEcCC-CCEEEEeeCCCcEEEEecCC----------cccccccccccCCCcccccccccceEEEEECCCCC-EEEE
Q psy2110         144 AVTCAFNKR-GTLLAVGCNDGRIVLWDFLT----------RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAV  211 (622)
Q Consensus       144 v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~  211 (622)
                      |++++|+|+ +.+||+++.||.|++|++..          ......+..|.           ..+.+++|+|++. +|++
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ-----------KEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS-----------SCCCCEEECTTSTTEEEE
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC-----------CCeEEEEeCCCCCCeEEE
Confidence            369999997 67999999999999999986          34444444443           3478999999998 9999


Q ss_pred             EeCCCeEEEEEcCCCce-------EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCC---cEEEEEe-CCCC
Q psy2110         212 GCNDGRIVLWDFLTRGI-------AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTG---ECEQKYR-FPSP  279 (622)
Q Consensus       212 ~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~  279 (622)
                      |+.||.|++|++.++..       ...+.+|...|.+++|+| ++..|++++.|+.|++||++++   +....+. +...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987322       456778999999999999 7789999999999999999987   4555554 7889


Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCC------
Q psy2110         280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPA------  351 (622)
Q Consensus       280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~------  351 (622)
                      |.+++|+|++..++++++.++.|++||++. ...+..+..|...+.+++|+|+++ ++++++.||.|++||+..      
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999999998999999999999999997 566778888999999999999995 689999999999999986      


Q ss_pred             --------ccEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeccc
Q psy2110         352 --------LELKASFKASTTAIKSIEFARRGN-CLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       352 --------~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~i~d~~~  393 (622)
                              .+++..+.+|...|++++|+|+++ +|++++.|+.|++|++..
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence                    367888889999999999999999 899999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.8e-31  Score=261.52  Aligned_cols=290  Identities=13%  Similarity=0.149  Sum_probs=213.9

Q ss_pred             EEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110         167 LWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR  246 (622)
Q Consensus       167 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  246 (622)
                      +|.+.+...+.....|.           ..|.+++|+|+|++|++|+.++ +++|++.+++.......  ..+..+++.+
T Consensus         3 i~s~~~~~~~~~~~~h~-----------~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~   68 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVS-----------NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLH   68 (355)
T ss_dssp             ----------------C-----------CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECT
T ss_pred             cccccccCCccccccCC-----------CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcC
Confidence            44555554544444443           3589999999999999998665 78999988766554432  3578889999


Q ss_pred             CCCEE-EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-ceeecccCCCCceE
Q psy2110         247 NGYKI-ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-HQIVPIDEDSDLSI  324 (622)
Q Consensus       247 ~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~  324 (622)
                      +++.+ ++++.|++|++||+.+++++..+.+...|.++.++++.   ++++ .++.+++||+.+. +.+..+..   ...
T Consensus        69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~  141 (355)
T 3vu4_A           69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGG  141 (355)
T ss_dssp             TSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred             CCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence            88877 46677899999999999999999999999999999863   2333 4788999999887 55555444   344


Q ss_pred             EEEEeeCCCEEEE--EecCCeEEEEeCCCcc----------------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc-
Q psy2110         325 VASFDRRGQHVVT--GNSKGKVLVLSCPALE----------------LKASFKASTTAIKSIEFARRGNCLLVNTGDRL-  385 (622)
Q Consensus       325 ~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-  385 (622)
                      .+++++  .++++  |+.+|.|++||+.+++                .+..+.+|...|++++|+|+|++|++++.|++ 
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            556666  56665  6889999999999765                26788999999999999999999999999998 


Q ss_pred             EEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee--EEEE---------
Q psy2110         386 IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL--VKIL---------  454 (622)
Q Consensus       386 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~--~~~~---------  454 (622)
                      |++||+.         ....+..+....+...+.+++|+|+|++|++++. |+.|+|||+..+..  ...+         
T Consensus       220 v~iwd~~---------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~  289 (355)
T 3vu4_A          220 IRVFKTE---------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYF  289 (355)
T ss_dssp             EEEEETT---------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred             EEEEECC---------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeecccc
Confidence            9999998         3455566653223457789999999999999997 99999999976531  1111         


Q ss_pred             -----------ecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         455 -----------HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       455 -----------~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                                 ..........++|+|+++.|++++ ||.+++|++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                       111111246799999999999999 99999999853

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1.4e-30  Score=270.66  Aligned_cols=330  Identities=12%  Similarity=0.087  Sum_probs=262.2

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  167 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v  167 (622)
                      +|+|++.++++++.+ ++|.+||..+++++.++..+.. +                 +.++|+|||++|++++.|++|++
T Consensus       144 ~~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~-~-----------------~~v~~spdg~~l~v~~~d~~V~v  204 (543)
T 1nir_A          144 DLDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYA-V-----------------HISRMSASGRYLLVIGRDARIDM  204 (543)
T ss_dssp             CCCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTT-E-----------------EEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcc-c-----------------ceEEECCCCCEEEEECCCCeEEE
Confidence            589999888888764 9999999999999999884433 4                 58999999999999999999999


Q ss_pred             Eec--CCcccccccccccCCCcccccccccceEEEEECC----CCCEEEEEeC-CCeEEEEEcCCCceEEEeccC-----
Q psy2110         168 WDF--LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK----RGTLLAVGCN-DGRIVLWDFLTRGIAKIISAH-----  235 (622)
Q Consensus       168 w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-----  235 (622)
                      ||+  .+++.+..+...            ..+..++|+|    +|++|++++. +++|.+||..+++++..+..+     
T Consensus       205 ~D~~~~t~~~~~~i~~g------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          205 IDLWAKEPTKVAEIKIG------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             EETTSSSCEEEEEEECC------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred             EECcCCCCcEEEEEecC------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence            999  777766665532            2468899999    9999999874 899999999999998887642     


Q ss_pred             -----C-cCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEE--EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         236 -----M-HPVCSISWSRNGYK-IISASTDNNVCIWDVLTGECEQ--KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       236 -----~-~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                           . ..+.++.+++++.. +++...++.|.+||+.+.+.+.  .+.+...+..+.|+|+++++++++..++.|.+||
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                 2 26889999997765 4556678999999998876544  5556677888999999998888888899999999


Q ss_pred             ecCCceeecccC----CCCceEEEEEeeC-CCEEEEEe-cCCeEEEEeCCC-------ccEEEEEecCCCCEEEEEEcCC
Q psy2110         307 TDGDHQIVPIDE----DSDLSIVASFDRR-GQHVVTGN-SKGKVLVLSCPA-------LELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       307 ~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      ..+++.+..+..    |......+ ++|+ +..++++. .+++|.+||+.+       +++++++..|...+..++++|+
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd  431 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  431 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred             CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence            999877766553    43333232 4677 55566665 579999999988       8999999999888889999999


Q ss_pred             CCEEEEEe-------CCCcEEEEecccccccCCCCCCCcc-eeeec------cccceeeeeEEEcCCCCeEEEeeC----
Q psy2110         374 GNCLLVNT-------GDRLIRVYNHQEVLNAGKDGDPEPI-QKLQD------LVNKTMWKKCCFSGDGEYVCAGSA----  435 (622)
Q Consensus       374 ~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~spdg~~l~~~~~----  435 (622)
                      +++|++++       .+++|.+||+.+.         ... ..+..      ......+..+.|+|+|++|+++..    
T Consensus       432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~  502 (543)
T 1nir_A          432 SSHLYVDTTFNPDARISQSVAVFDLKNL---------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN  502 (543)
T ss_dssp             CCEEEECCTTCSSHHHHTCEEEEETTCT---------TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred             CCcEEEecCCCCCcccCceEEEEECCCC---------CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence            99999987       2679999999842         222 22211      112345667899999999987632    


Q ss_pred             CCCeEEEEECCCCeeEEEEecCC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      .++.|.|||.+++++++.++.+.
T Consensus       503 ~~~~i~v~D~~t~~~~~~i~~~~  525 (543)
T 1nir_A          503 DSSALVVVDDKTLKLKAVVKDPR  525 (543)
T ss_dssp             SCCEEEEEETTTTEEEEEECCTT
T ss_pred             CCCeEEEEECCCceEEEeecCCC
Confidence            37899999999999999998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.1e-32  Score=274.61  Aligned_cols=273  Identities=14%  Similarity=0.088  Sum_probs=185.4

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccc-----cccccccCCCcccccccccceEEEEECC--------CCCEEEEE
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHPEFDGALDCISLAVTCAFNK--------RGTLLAVG  212 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~g~~l~~~  212 (622)
                      ...+++++.+|++++.|++|+|||..++...     ..+.+|.           ..|.+++|+|        ++++||++
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~-----------~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH-----------NFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS-----------SCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC-----------CceEEEEEccccccccCCCCCEEEEE
Confidence            5567778889999999999999999887543     2344444           4599999998        88999999


Q ss_pred             eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeC-C----CCeEEEEEe
Q psy2110         213 CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRF-P----SPILKVQFH  286 (622)
Q Consensus       213 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~-~----~~v~~~~~~  286 (622)
                      +.|++|+|||+.++..+..+..|...+.+++|+|++. +|++++.|++|++||+++++....... .    ..+......
T Consensus       163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            9999999999999888888888999999999999874 799999999999999999876654431 1    111111111


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe-eCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD-RRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                      +..                      .......|...+.++.|+ ++++.+++++.|+.+++||+..++....+..|...+
T Consensus       243 ~~~----------------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~  300 (393)
T 4gq1_A          243 PLV----------------------NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKL  300 (393)
T ss_dssp             GGC----------------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------
T ss_pred             cce----------------------eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcc
Confidence            111                      111223466677788876 799999999999999999999988888888777777


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC--CCCeEEEeeCCCCeEEEE
Q psy2110         366 KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG--DGEYVCAGSARQHALYIW  443 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~d~~i~iw  443 (622)
                      ..+.+.|+.+.+....                                   ....+.|+|  ++.++++|+. |+.|++|
T Consensus       301 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~sgs~-Dg~V~lw  344 (393)
T 4gq1_A          301 GPKNLLPNVQGISLFP-----------------------------------SLLGACPHPRYMDYFATAHSQ-HGLIQLI  344 (393)
T ss_dssp             ---CCSCSEEEECSSC-----------------------------------CSSCCEECSSCTTEEEEEETT-TTEEEEE
T ss_pred             ccEEEccccccccccC-----------------------------------cceeEEEccCCCCEEEEEECC-CCEEEEE
Confidence            7777766643221100                                   001123443  3445555665 9999999


Q ss_pred             ECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         444 EKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       444 d~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      |+.+++.+..+.+|... |++++|+|+|++||+++++.+.+|++.
T Consensus       345 d~~~~~~~~~~~~~~~~-V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          345 NTYEKDSNSIPIQLGMP-IVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             ETTCTTCCEEEEECSSC-EEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ECCCCcEEEEecCCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            99999998888888875 999999999999999997778888764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-30  Score=265.83  Aligned_cols=250  Identities=14%  Similarity=0.212  Sum_probs=213.6

Q ss_pred             hhhhhccccceeEEEEcCC-CCEEEEecCCCCeEEEEEcCC----------CceEEEEeccCcceeEEEEeecCcccccc
Q psy2110          74 KLQDLVNKTMWKKCCFSGD-GEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGELLLDVVEFDGALDCIS  142 (622)
Q Consensus        74 ~~~~~~~~~~~~~~~~sp~-~~~l~~~~~~~~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  142 (622)
                      ......+...+.+++|+|+ +.+|++++.+ |.|++|++.+          .+.+..+.+|...+               
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------  184 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG---------------  184 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC---------------
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCe---------------
Confidence            3445567778899999997 6788888865 9999999987          67788899999888               


Q ss_pred             ceeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccc-------cccccccCCCcccccccccceEEEEECC-CCCEEEEEe
Q psy2110         143 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIA-------KIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGC  213 (622)
Q Consensus       143 ~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~  213 (622)
                        ++++|+|++. +|++|+.||.|++|++..+...       ..+..|.           ..|.+++|+| ++.+|++++
T Consensus       185 --~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~-----------~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          185 --YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT-----------AVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             --CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS-----------SCEEEEEECSSCTTEEEEEE
T ss_pred             --EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC-----------CCEeeeEEeCCCCCEEEEEe
Confidence              5999999998 9999999999999999874321       1222222           4589999999 678999999


Q ss_pred             CCCeEEEEEcCCC---ceEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcEEEEEe-CCCCeEEEEEeC
Q psy2110         214 NDGRIVLWDFLTR---GIAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLT-GECEQKYR-FPSPILKVQFHP  287 (622)
Q Consensus       214 ~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~  287 (622)
                      .++.|++||+.++   +....+..|...|++++|+|++. .|++++.||.|++||+++ .+.+..+. |...|.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999977   56778889999999999999887 688999999999999998 45666666 889999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEEecC--------------CceeecccCCCCceEEEEEeeCCC-EEEEEecCCeEEEEeCCCc
Q psy2110         288 RNDHMFLVCPMRHAAVLVDTDG--------------DHQIVPIDEDSDLSIVASFDRRGQ-HVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  352 (622)
                      +++.++++++.++.|++||+..              ...+.....|...+..++|+|+++ ++++++.||.|++|++...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9998999999999999999986              255667778889999999999999 8999999999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-31  Score=257.78  Aligned_cols=273  Identities=9%  Similarity=-0.006  Sum_probs=213.7

Q ss_pred             EEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEE
Q psy2110          88 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL  167 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v  167 (622)
                      .+.+++.+|++|+.| |.|++||+.+++.+..+.  ...+                 .++.|+|+   +++++.|++|++
T Consensus        43 ~~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~--~~~v-----------------~~~~~~~~---~~s~s~D~~i~~   99 (343)
T 3lrv_A           43 SMYYDKWVCMCRCED-GALHFTQLKDSKTITTIT--TPNP-----------------RTGGEHPA---IISRGPCNRLLL   99 (343)
T ss_dssp             SSSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE--EECC-----------------CTTCCCCS---EEEECSTTEEEE
T ss_pred             hhcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe--cCCc-----------------eeeeeCCc---eEEecCCCeEEE
Confidence            445678888888875 899999998888877776  2333                 47778887   888899999999


Q ss_pred             EecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcC
Q psy2110         168 WDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSR  246 (622)
Q Consensus       168 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~  246 (622)
                      |+...                                            .+.+|++.+++.+..+. +|...|.+++|+|
T Consensus       100 w~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  135 (343)
T 3lrv_A          100 LYPGN--------------------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHN  135 (343)
T ss_dssp             EETTT--------------------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred             EEccC--------------------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence            97543                                            35567777777665554 7778999999999


Q ss_pred             --CCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccC-CC
Q psy2110         247 --NGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDE-DS  320 (622)
Q Consensus       247 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~  320 (622)
                        ++++|++++.||.|++||+++++......  +...+.+++|+|++. ++++++.|+.|++||+++.... ..+.. |.
T Consensus       136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~  214 (343)
T 3lrv_A          136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEE  214 (343)
T ss_dssp             ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence              99999999999999999999999877664  456799999999887 6888899999999999998877 67777 89


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecccc
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---STTAIK--SIEFARRGNCLLVNTG-DRLIRVYNHQEV  394 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~--~~~~s~~~~~l~~~~~-d~~i~i~d~~~~  394 (622)
                      ..+.+++|+|++.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|+|++|++++. |+.|++|++...
T Consensus       215 ~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          215 AKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            9999999999999999999 45999999998876554443   333343  6999999999999998 999999999731


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcC---CCCeEEEeeCCCCeEEEEEC
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG---DGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---dg~~l~~~~~~d~~i~iwd~  445 (622)
                               ......      ..+..++|++   +++.+++++. ++.+.++-.
T Consensus       294 ---------~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~-d~~~~~~~~  331 (343)
T 3lrv_A          294 ---------TKNWTK------DEESALCLQSDTADFTDMDVVCG-DGGIAAILK  331 (343)
T ss_dssp             ---------TCSEEE------EEEEECCC----CCCCEEEEEEE-TTEEEEEEE
T ss_pred             ---------ccceEe------cCceeEecCccccccceeEEEec-CCceEEEEe
Confidence                     111111      3445668888   8899999987 788877753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=290.37  Aligned_cols=245  Identities=20%  Similarity=0.329  Sum_probs=210.3

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--CCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC--CCE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR--GTL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d--~~~  155 (622)
                      +...+.+++|+|++++|++|+.+ |.|+|||+.  +++.+..+.+|.+.|                 ++++|+|+  +++
T Consensus         8 H~~~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V-----------------~~l~~s~~~~~~~   69 (753)
T 3jro_A            8 HNELIHDAVLDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPV-----------------WRVDWAHPKFGTI   69 (753)
T ss_dssp             CCCCEEEECCCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCE-----------------EEEEECCTTSCSE
T ss_pred             CcceeEEEEECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCce-----------------EEEEecCCCCCCE
Confidence            44567899999999999999975 999999998  667888899999988                 59999988  999


Q ss_pred             EEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eE
Q psy2110         156 LAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IA  229 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~  229 (622)
                      |++|+.||.|++||+.+++  ....+..|.           ..|.+++|+|+  ++++++|+.||.|++||+.++.  ..
T Consensus        70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~  138 (753)
T 3jro_A           70 LASCSYDGKVLIWKEENGRWSQIAVHAVHS-----------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP  138 (753)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCS-----------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred             EEEEeCCCeEEEEECCCCcccccccccCCC-----------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence            9999999999999999875  444444443           35899999999  9999999999999999998773  44


Q ss_pred             EEeccCCcCeeEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCc----EEEEEe-CCCCeEEEEEeCCC--
Q psy2110         230 KIISAHMHPVCSISWSR-------------NGYKIISASTDNNVCIWDVLTGE----CEQKYR-FPSPILKVQFHPRN--  289 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~-------------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--  289 (622)
                      ..+.+|...|.+++|+|             ++.+|++++.||.|++||++++.    ....+. |...|.+++|+|++  
T Consensus       139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence            56778999999999999             58999999999999999998773    444444 78899999999995  


Q ss_pred             CeEEEEeeCCCcEEEEEecCCc-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDH-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      ..++++++.|+.+++||+++..     .......+...+.+++|+|+|+++++++.||.|++|++..+.
T Consensus       219 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          219 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            5689999999999999998763     444455678889999999999999999999999999998543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.3e-31  Score=291.28  Aligned_cols=249  Identities=14%  Similarity=0.211  Sum_probs=211.5

Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCCcccccccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCI  194 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~  194 (622)
                      +..+.+|.+.|                 ++++|+|++++|++|+.||.|++|++.  ++.....+..|.           
T Consensus         2 ~~~l~gH~~~V-----------------~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~-----------   53 (753)
T 3jro_A            2 VVIANAHNELI-----------------HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE-----------   53 (753)
T ss_dssp             ------CCCCE-----------------EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS-----------
T ss_pred             eeecccCccee-----------------EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc-----------
Confidence            34677888888                 599999999999999999999999998  445556666554           


Q ss_pred             cceEEEEECCC--CCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q psy2110         195 SLAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRN--GYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       195 ~~v~~~~~s~~--g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~  268 (622)
                      ..|.+++|+|+  +++|++|+.||.|++||+.+++  ....+.+|...|++++|+|+  ++.|++++.||.|++||++++
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            35899999988  9999999999999999999887  67788899999999999999  999999999999999999887


Q ss_pred             c---EEEEEeCCCCeEEEEEeCC------------CCeEEEEeeCCCcEEEEEecCC----ceeecccCCCCceEEEEEe
Q psy2110         269 E---CEQKYRFPSPILKVQFHPR------------NDHMFLVCPMRHAAVLVDTDGD----HQIVPIDEDSDLSIVASFD  329 (622)
Q Consensus       269 ~---~~~~~~~~~~v~~~~~~~~------------~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~  329 (622)
                      .   ......+...|.+++|+|.            +..++++++.++.|++||+++.    .....+..|...+.+++|+
T Consensus       134 ~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s  213 (753)
T 3jro_A          134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS  213 (753)
T ss_dssp             SCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence            3   2333348889999999995            2447889999999999999876    4556778899999999999


Q ss_pred             eC---CCEEEEEecCCeEEEEeCCCcc-----EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         330 RR---GQHVVTGNSKGKVLVLSCPALE-----LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       330 ~~---~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      |+   ++++++++.||.|++||+.+++     .......|...|++++|+|++++|++++.||.|++|++..
T Consensus       214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99   8999999999999999998864     2333346888999999999999999999999999999984

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=9.9e-30  Score=238.56  Aligned_cols=258  Identities=12%  Similarity=0.103  Sum_probs=197.1

Q ss_pred             EEEEecCCCCeEEEEEcCCC---ceEEEEeccCcceeEEEEeec-Ccccc-------ccceeEEEEcCC----CCEEEEe
Q psy2110          95 YVCAGSARQHALYIWEKSVG---NLVKILHGTKGELLLDVVEFD-GALDC-------ISLAVTCAFNKR----GTLLAVG  159 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~-------~~~v~~~~~s~d----~~~l~s~  159 (622)
                      .+++++.  ..|++|+..++   ++++++.+|..+|+....... -.+-|       ...|++++|+||    +++++++
T Consensus        56 ~~~~~~~--~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~  133 (356)
T 2w18_A           56 CIITACE--DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS  133 (356)
T ss_dssp             EEEEEES--SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE
T ss_pred             EEEEecc--ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC
Confidence            5677774  69999999999   899999999998864333221 11111       236788899999    8888887


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEc-CCCceEEEeccCC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDF-LTRGIAKIISAHM  236 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~  236 (622)
                      +.  .+++|++.                                 +|+++.+++  .++.|++|++ .+++.+..+..|.
T Consensus       134 g~--~~~v~~l~---------------------------------~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~  178 (356)
T 2w18_A          134 GN--IKAVLGLT---------------------------------KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP  178 (356)
T ss_dssp             EE--EEEEEEET---------------------------------TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred             CC--eEEEEecC---------------------------------CCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence            74  37777542                                 234444433  5899999999 4588888888999


Q ss_pred             cCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEEe-CC---CCeEEEEEeCCCCeE-----------EEEeeC
Q psy2110         237 HPVCSISWSR---NGYKIISASTDNNVCIWDVLTGECEQKYR-FP---SPILKVQFHPRNDHM-----------FLVCPM  298 (622)
Q Consensus       237 ~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~---~~v~~~~~~~~~~~~-----------~~~~~~  298 (622)
                      ..++.++|++   ++.+|++++.|++|+|||+.++++++.+. +.   ..+.+++|+|++..+           +++++.
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            9999999999   77999999999999999999999999987 32   367788999998755           356788


Q ss_pred             CCcEEEEEecCCceeecc-----cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEE-EEEEcC
Q psy2110         299 RHAAVLVDTDGDHQIVPI-----DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK-SIEFAR  372 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~  372 (622)
                      |+++++||..++..+..+     .+|...+.  ..+.++.++++++.|++|+|||+.+++++.++.+|...+. .++|+|
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence            999999999988765443     24444433  3344488999999999999999999999999999877655 589999


Q ss_pred             CCCEEEEEeCCCcEEEEec
Q psy2110         373 RGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       373 ~~~~l~~~~~d~~i~i~d~  391 (622)
                      ||++|++++.|++|+|||+
T Consensus       337 DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEECCCcEEEecC
Confidence            9999999999999999986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.8e-31  Score=267.75  Aligned_cols=253  Identities=11%  Similarity=0.128  Sum_probs=181.9

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE-----EEeccCcceeEEEEeecCccccccceeEEEEcC--------C
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK-----ILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--------R  152 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--------d  152 (622)
                      ...+++++.+|++++.| ++|+|||+.+++...     .+.+|.+.|                 .+++|+|        |
T Consensus        94 ~~~~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v-----------------~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFV-----------------NDIDIADVYSADNRLA  155 (393)
T ss_dssp             ---CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCE-----------------EEEEEEEEECTTCSEE
T ss_pred             eeecCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCce-----------------EEEEEccccccccCCC
Confidence            45677788899999975 999999999886543     367899988                 5999998        8


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      +++||+|+.|++|+|||+.++.....+..+.           ..+.+++|+|++. +|++++.|+.|++||+.+++....
T Consensus       156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~-----------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLS-----------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE  224 (393)
T ss_dssp             EEEEEEEETTSEEEEEEEETTEEEEEEEECS-----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred             CCEEEEEECCCeEEEEECCCCceeeeecCCC-----------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence            8999999999999999998876666555554           3589999999875 799999999999999987654322


Q ss_pred             -------------------------eccCCcCeeEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEE
Q psy2110         232 -------------------------ISAHMHPVCSISWS-RNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQ  284 (622)
Q Consensus       232 -------------------------~~~~~~~v~~~~~s-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~  284 (622)
                                               ..+|...+.++.|+ ++++.|++++.|+++++||+.+++....+. +...+..+.
T Consensus       225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN  304 (393)
T ss_dssp             ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred             ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence                                     23677889999987 799999999999999999999887766554 445555566


Q ss_pred             EeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEecCCC
Q psy2110         285 FHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKASTT  363 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  363 (622)
                      +.|+....                        ..+...+..+.+.+ ++.++++|+.||.|++||+.+++....+..|..
T Consensus       305 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~  360 (393)
T 4gq1_A          305 LLPNVQGI------------------------SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM  360 (393)
T ss_dssp             CSCSEEEE------------------------CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred             Eccccccc------------------------cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence            66543210                        11111122222222 445677788999999999999999888889999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .|++++|+|+|++||+++.+| +.+|.+.
T Consensus       361 ~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          361 PIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            999999999999999998765 5666654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1e-30  Score=257.64  Aligned_cols=267  Identities=12%  Similarity=0.079  Sum_probs=211.6

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEE
Q psy2110         201 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL---------TGECE  271 (622)
Q Consensus       201 ~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~---------~~~~~  271 (622)
                      .+.+++++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            345678899999999999999999999888776  467888889888   9999999999999655         55655


Q ss_pred             EEEe--CCCCeEEEEEeC--CCCeEEEEeeCCCcEEEEEecCCceeecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110         272 QKYR--FPSPILKVQFHP--RNDHMFLVCPMRHAAVLVDTDGDHQIVPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLV  346 (622)
Q Consensus       272 ~~~~--~~~~v~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  346 (622)
                      +.+.  +..+|.+++|+|  ++. ++++++.|+.+++||+++....... ..+...+.+++|+|++.++++|+.||.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            5555  557899999999  776 6888999999999999988776554 334557999999999999999999999999


Q ss_pred             EeCCCccEE-EEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc-eee--eeE
Q psy2110         347 LSCPALELK-ASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMW--KKC  421 (622)
Q Consensus       347 ~d~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~  421 (622)
                      ||+++++.+ ..+.. |...|++++|+|++.+|++++ ++.|++||++..         ..+..+.....+ ..+  .++
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD---------VGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS---------TTCBSSCCCBC-----CCEEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC---------CcceeecccccccccccceEE
Confidence            999999987 78888 999999999999999999999 459999999842         222222211111 111  458


Q ss_pred             EEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECC---CCCEEEEEe-CCcEEEeecC
Q psy2110         422 CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP---VRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       422 ~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~s~~-dg~v~iw~~~  488 (622)
                      +|+|+|++|++++..++.|+||++..+......     .++..++|+|   +...+++++ ||.+.++-..
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            999999999998865789999998765433332     2378899999   888888888 9999987653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=1.4e-29  Score=263.12  Aligned_cols=337  Identities=13%  Similarity=0.059  Sum_probs=259.7

Q ss_pred             EEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc--CC
Q psy2110         148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF--LT  225 (622)
Q Consensus       148 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~--~~  225 (622)
                      +|+|++.++++++.|++|.+||..+++.+..+....            .+..++|+|+|++|++++.++.|++||+  .+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~------------~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t  211 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY------------AVHISRMSASGRYLLVIGRDARIDMIDLWAKE  211 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST------------TEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc------------ccceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence            488999999999999999999999998887776332            2578999999999999999999999999  88


Q ss_pred             CceEEEeccCCcCeeEEEEcC----CCCEEEEEeC-CCcEEEEECCCCcEEEEEeC------------CCCeEEEEEeCC
Q psy2110         226 RGIAKIISAHMHPVCSISWSR----NGYKIISAST-DNNVCIWDVLTGECEQKYRF------------PSPILKVQFHPR  288 (622)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~  288 (622)
                      ++.+..+.. ...+.+++|+|    ||++|++++. +++|.+||..++++++.+..            ...+.++.++|+
T Consensus       212 ~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~  290 (543)
T 1nir_A          212 PTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE  290 (543)
T ss_dssp             CEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred             CcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence            888888874 45679999999    9999999885 89999999999999888763            226889999999


Q ss_pred             CCeEEEEeeCCCcEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEec----C
Q psy2110         289 NDHMFLVCPMRHAAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKA----S  361 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~----~  361 (622)
                      ++.++++...++.|.+||..+...+.  .+ .+...+..++|+|+|+++++++ .+++|.+||+.+++++..+..    |
T Consensus       291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph  369 (543)
T 1nir_A          291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH  369 (543)
T ss_dssp             SSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred             CCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence            99999999999999999998754332  33 2455677899999999877654 588999999999999988874    5


Q ss_pred             CCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC---C
Q psy2110         362 TTAIKSIEFARR-GNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA---R  436 (622)
Q Consensus       362 ~~~i~~~~~s~~-~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~---~  436 (622)
                      ......+ ++|+ +..++++. .|++|.+||+.....  .....+.++.+..+.  .....+.|+|+|++|++++.   +
T Consensus       370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~  444 (543)
T 1nir_A          370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPD  444 (543)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSS
T ss_pred             CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCC
Confidence            4444343 4777 55566664 589999999984100  011145566665433  23356799999999999862   1


Q ss_pred             ---CCeEEEEECCCCeeE-EEE--------ecCCCCceeEEEECCCCCEEEEE-----e-CCcEEEeecCCccccc----
Q psy2110         437 ---QHALYIWEKSVGNLV-KIL--------HGTKGELLLDVVWHPVRPIIASI-----S-SGVVSLWAQNQVENWS----  494 (622)
Q Consensus       437 ---d~~i~iwd~~~~~~~-~~~--------~~~~~~~v~~v~~sp~~~~l~s~-----~-dg~v~iw~~~~~~~~~----  494 (622)
                         +++|.|||+.+++.. ..+        ..+. ..+..++|+|+|+.|+++     + ++.|.|||..+.+...    
T Consensus       445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA-KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC-CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             cccCceEEEEECCCCCCCeEEeechhhcccCCCC-CceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence               568999999998877 444        2333 349999999999988765     2 6999999998653321    


Q ss_pred             --ccCCCCceec
Q psy2110         495 --AFAPDFKELD  504 (622)
Q Consensus       495 --~~s~~~~~l~  504 (622)
                        .++|.|+.-.
T Consensus       524 ~~~~~p~g~~~~  535 (543)
T 1nir_A          524 PRLITPTGKFNV  535 (543)
T ss_dssp             TTCCSEEEEEEH
T ss_pred             CCccCCCeeeec
Confidence              4556666544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3e-29  Score=235.32  Aligned_cols=281  Identities=7%  Similarity=0.051  Sum_probs=196.5

Q ss_pred             eeEEEEcCCCC---EEEEeeCCCcEEEEecCCc---ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         144 AVTCAFNKRGT---LLAVGCNDGRIVLWDFLTR---GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       144 v~~~~~s~d~~---~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                      +.++-|-..+.   .+++++. ..|++|+..++   +.+.++..+..           .|..+++.||-.-|++..- | 
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~-  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEV-----------PVLQIVPVPDVYNLVCVAL-G-  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSS-----------CEEEECCCTTCCSCEEEEE-C-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCc-----------eeEEEEEcCcccceeeeee-c-
Confidence            34666655444   6777776 68999999998   66777776653           4889999997654443321 1 


Q ss_pred             EEEEEcCCCceEEEeccCCcCeeEEEEcCC----CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         218 IVLWDFLTRGIAKIISAHMHPVCSISWSRN----GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                                     .-+...|++++++||    ++++++++.  .+.+|++.+++.+....                  
T Consensus       108 ---------------~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~------------------  152 (356)
T 2w18_A          108 ---------------NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSG------------------  152 (356)
T ss_dssp             ---------------SSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEES------------------
T ss_pred             ---------------cccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecc------------------
Confidence                           124567899999999    999999884  47888776554433321                  


Q ss_pred             EEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEee---CCCEEEEEecCCeEEEEeCCCccEEEEEecCCC---CEE
Q psy2110         294 LVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDR---RGQHVVTGNSKGKVLVLSCPALELKASFKASTT---AIK  366 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~  366 (622)
                        .+.++.|++|++.. ++.+..+..|...+..++|++   ++.+|++++.|++|+|||+.++++++++.+|..   .+.
T Consensus       153 --~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~  230 (356)
T 2w18_A          153 --TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC  230 (356)
T ss_dssp             --SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE
T ss_pred             --cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE
Confidence              12355566666632 444555667888888999999   779999999999999999999999999986543   577


Q ss_pred             EEEEcCCCCEE------------EEEeCCCcEEEEecccccccCCCCCCCcceeee--ccccc-eeeeeEEEcCCCCeEE
Q psy2110         367 SIEFARRGNCL------------LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ--DLVNK-TMWKKCCFSGDGEYVC  431 (622)
Q Consensus       367 ~~~~s~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~spdg~~l~  431 (622)
                      +++|+|+|+++            ++++.|++|++||..+.         ..+..+.  ...++ ..+.+..+  ++.++|
T Consensus       231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg---------k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lA  299 (356)
T 2w18_A          231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT---------LSVGVMLYCLPPGQAGRFLEGDV--KDHCAA  299 (356)
T ss_dssp             EEEEEETTEEEEEEC------------CCEEEEEEETTTT---------EEEEEEEECCCTTCCCCEEEEEE--ETTEEE
T ss_pred             EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC---------EEEEEEEeeccCCCcceeEcccc--CCCEEE
Confidence            78999999876            55778999999998832         2222221  00011 11222233  377889


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      +++. |++|+|||+.+|+++..+.+|....+..++|+|++++|++++ |++|+||++
T Consensus       300 SgS~-DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          300 AILT-SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEET-TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEcC-CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9987 999999999999999999999877455699999999999999 999999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=7.5e-29  Score=250.09  Aligned_cols=299  Identities=14%  Similarity=0.166  Sum_probs=229.0

Q ss_pred             eEEEEcCCCC-EEEEee----CCC----cEEEEec--CCccccc--ccccccCCCcccccccccceEEEEECC-------
Q psy2110         145 VTCAFNKRGT-LLAVGC----NDG----RIVLWDF--LTRGIAK--IISAHMHPEFDGALDCISLAVTCAFNK-------  204 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~----~dg----~i~vw~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-------  204 (622)
                      ....|++.|. ++++|+    .+|    .|++||+  .+++.+.  .+..+...           +..+++++       
T Consensus        66 ~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~~~  134 (415)
T 2hqs_A           66 QPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW-----------LRYAGHTASDEVFEK  134 (415)
T ss_dssp             CHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGG-----------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhH-----------HHHHHHHHHHHHHHH
Confidence            4667888776 565776    467    8999999  8887653  24443221           22222222       


Q ss_pred             -------CCCEEEEEeCC------CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q psy2110         205 -------RGTLLAVGCND------GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTG  268 (622)
Q Consensus       205 -------~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~  268 (622)
                             .+..+++++.+      +.|++||+.. ...+.+..|...+.+++|+|||++|++++.++   .|++||+.++
T Consensus       135 ~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          135 LTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             HHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             HcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence                   25566666554      7999999974 55677888999999999999999999999875   9999999999


Q ss_pred             cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc--EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-C--e
Q psy2110         269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA--AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-G--K  343 (622)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~  343 (622)
                      +......+...+.+++|+|+++.++++++.++.  +++||+.++.. ..+..+...+..++|+|+|++|++++.+ +  .
T Consensus       214 ~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~  292 (415)
T 2hqs_A          214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ  292 (415)
T ss_dssp             CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence            987766688899999999999988878776654  89999987654 5566677889999999999999888764 4  7


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD---RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK  420 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (622)
                      |++||+.+++. ..+..+...+.+++|+|+|++|++++.+   ..|++||+..         .. ...+...   ..+..
T Consensus       293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~---------~~-~~~l~~~---~~~~~  358 (415)
T 2hqs_A          293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---------GG-VQVLSST---FLDET  358 (415)
T ss_dssp             EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---------CC-EEECCCS---SSCEE
T ss_pred             EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC---------CC-EEEecCC---CCcCC
Confidence            88889988764 3455667789999999999999988764   5799999873         11 1223222   25567


Q ss_pred             EEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110         421 CCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                      ++|+|||++|++++.+++  .|++||+. +.....+.+|.+. |.+++|+|...
T Consensus       359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~-v~~~~~~~~~~  410 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ-VKFPAWSPYLH  410 (415)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSE-EEEEEECCCCC
T ss_pred             eEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCC-CcCCccccccc
Confidence            899999999999887444  79999987 5557888888877 99999999753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=4.1e-28  Score=265.23  Aligned_cols=341  Identities=11%  Similarity=0.126  Sum_probs=243.5

Q ss_pred             cceeEEEEcCCCCEEEEecCCCC-----eEEEEEcCCCceEEEEeccCcceeEEEEeecC-------ccccccceeEEEE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQH-----ALYIWEKSVGNLVKILHGTKGELLLDVVEFDG-------ALDCISLAVTCAF  149 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~v~~~~~  149 (622)
                      ..+.+++|||||++|++++..++     .|++||+.+++....+..+...-........+       .......+.+++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            34678999999999999987346     89999999998887776654320000000000       0000012468999


Q ss_pred             cCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy2110         150 NKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       150 s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                      ||||++|++++. +.|++||+.++.  ....+..+.           ..+..++|+|||++|++++ ++.|++||+.+++
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~-----------~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE-----------GFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS-----------SCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC-----------cccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence            999999999987 899999998872  223333322           2478999999999999987 5699999999887


Q ss_pred             eEEEeccCCcC----------------eeEEEEcCCCCEEEEEeCCC---------------------------------
Q psy2110         228 IAKIISAHMHP----------------VCSISWSRNGYKIISASTDN---------------------------------  258 (622)
Q Consensus       228 ~~~~~~~~~~~----------------v~~~~~s~~~~~l~s~~~d~---------------------------------  258 (622)
                      .......+...                +.+++|||||++|++++.|+                                 
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence            66555444332                47899999999999987765                                 


Q ss_pred             cEEEEECCC-CcEEEEE---eCCCCeEEEEEeCCCCeEEEEee----CCCcEEEEEecCCceeecccCCCC----ceEEE
Q psy2110         259 NVCIWDVLT-GECEQKY---RFPSPILKVQFHPRNDHMFLVCP----MRHAAVLVDTDGDHQIVPIDEDSD----LSIVA  326 (622)
Q Consensus       259 ~i~iwd~~~-~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~  326 (622)
                      .|++||+.+ ++.....   .+...+..++| |+++.+++.+.    .+..+++||+.++.....+..+..    .+..+
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  342 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL  342 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence            789999998 8765544   24567899999 99998777664    356799999988766555444332    34578


Q ss_pred             EEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecCCCCEEEE-EEcCCCCEEEEEeC-CC--cEEEEecccccccCCCC
Q psy2110         327 SFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKASTTAIKSI-EFARRGNCLLVNTG-DR--LIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~  401 (622)
                      +|+|+|+++++++.+|.+.||.+. +++ ...+..+...+..+ .|+|+++.|++.+. ++  .+++|++..        
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~--------  413 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL--------  413 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET--------
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc--------
Confidence            999999999999999877777654 345 77788888888887 59999998876554 44  899999862        


Q ss_pred             CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC---CeEEEEECCCC
Q psy2110         402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVG  448 (622)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d---~~i~iwd~~~~  448 (622)
                      .......+..   ...+..++|||||++|+......   ..+++|+...+
T Consensus       414 ~g~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          414 QGGQPQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             TCCCCEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCCCeeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            1122333332   23345789999999998765422   46899987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=9.2e-28  Score=262.45  Aligned_cols=329  Identities=10%  Similarity=0.071  Sum_probs=241.3

Q ss_pred             eeEEEEcCCCCEEEEeeC-CC-----cEEEEecCCcccccccccccCCC-----------c--ccccccccceEEEEECC
Q psy2110         144 AVTCAFNKRGTLLAVGCN-DG-----RIVLWDFLTRGIAKIISAHMHPE-----------F--DGALDCISLAVTCAFNK  204 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~v~~~~~s~  204 (622)
                      +.+++|||||++|++++. |+     .|++||+.+++....+..+....           .  .........+.+++|+|
T Consensus        39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp  118 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP  118 (741)
T ss_dssp             CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred             CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence            469999999999999998 88     89999999987665554332110           0  00000001367889999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCC---
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP---  279 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---  279 (622)
                      ||++|++++. +.|++||+.++.  ....+..|...+.+++|||||++|++++ ++.|++||+.+++..+.......   
T Consensus       119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~  196 (741)
T 2ecf_A          119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG  196 (741)
T ss_dssp             TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE
T ss_pred             CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee
Confidence            9999999886 999999998873  4456777888999999999999999987 46899999999887665543222   


Q ss_pred             --------------eEEEEEeCCCCeEEEEeeCCC--------------------------------cEEEEEecC-Cce
Q psy2110         280 --------------ILKVQFHPRNDHMFLVCPMRH--------------------------------AAVLVDTDG-DHQ  312 (622)
Q Consensus       280 --------------v~~~~~~~~~~~~~~~~~~~~--------------------------------~i~~~d~~~-~~~  312 (622)
                                    +..+.|+||++.++++....+                                .+++||+.+ +..
T Consensus       197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~  276 (741)
T 2ecf_A          197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT  276 (741)
T ss_dssp             ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred             ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence                          478999999998776654332                                678888877 654


Q ss_pred             eeccc--CCCCceEEEEEeeCCCEEEEEec-----CCeEEEEeCCCccEEEEEecCCC----CEEEEEEcCCCCEEEEEe
Q psy2110         313 IVPID--EDSDLSIVASFDRRGQHVVTGNS-----KGKVLVLSCPALELKASFKASTT----AIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       313 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~  381 (622)
                      .....  .+...+..++| |||++|++++.     +..|++||+.+++....+..+..    .+.+++|+|||+++++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  355 (741)
T 2ecf_A          277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE  355 (741)
T ss_dssp             EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC
T ss_pred             EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec
Confidence            43322  36677889999 99999987654     56899999999988877766543    456899999999888888


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeE-EEcCCCCeEEEeeCCCC--eEEEEECCC-CeeEEEEecC
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC-CFSGDGEYVCAGSARQH--ALYIWEKSV-GNLVKILHGT  457 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~d~--~i~iwd~~~-~~~~~~~~~~  457 (622)
                      .++.++||.++.        ... ...+..+  ...+..+ .|+|||++|+..+..++  .++||++.. +.....+.. 
T Consensus       356 ~~g~~~l~~~~~--------~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-  423 (741)
T 2ecf_A          356 RTGFQHLYRIDS--------KGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-  423 (741)
T ss_dssp             TTSSCEEEEECS--------SSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred             CCCccEEEEEcC--------CCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence            899888887652        111 3333322  2334455 69999998876665455  789998764 555667766 


Q ss_pred             CCCceeEEEECCCCCEEEEEe-C----CcEEEeecC
Q psy2110         458 KGELLLDVVWHPVRPIIASIS-S----GVVSLWAQN  488 (622)
Q Consensus       458 ~~~~v~~v~~sp~~~~l~s~~-d----g~v~iw~~~  488 (622)
                      ... +..++|+|+++.|+... +    ..+++|+..
T Consensus       424 ~~~-~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          424 APG-MHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             SCS-EEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             CCC-ceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            333 88999999999887664 3    468888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.8e-27  Score=238.58  Aligned_cols=301  Identities=12%  Similarity=0.106  Sum_probs=227.5

Q ss_pred             ceeEEEEcCCCC-EEEEecC---CCC----eEEEEEc--CCCceE--EEEeccCcceeEEEEeecCccccccceeEEEEc
Q psy2110          83 MWKKCCFSGDGE-YVCAGSA---RQH----ALYIWEK--SVGNLV--KILHGTKGELLLDVVEFDGALDCISLAVTCAFN  150 (622)
Q Consensus        83 ~~~~~~~sp~~~-~l~~~~~---~~~----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s  150 (622)
                      .+....|++.|. ++++|+.   .+|    .|++||+  .+++.+  ..+.+|...+                 +.++++
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~  126 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL-----------------RYAGHT  126 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGH-----------------HHHHHH
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHH-----------------HHHHHH
Confidence            445567888875 4546652   347    8999999  999877  5588888766                 244444


Q ss_pred             C--------------CCCEEEEeeCC------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE
Q psy2110         151 K--------------RGTLLAVGCND------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA  210 (622)
Q Consensus       151 ~--------------d~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  210 (622)
                      +              .+..++.++.+      +.|++||+.. .....+..+.           ..+.+++|+|+|++|+
T Consensus       127 ~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~-----------~~v~~~~~Spdg~~la  194 (415)
T 2hqs_A          127 ASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSP-----------QPLMSPAWSPDGSKLA  194 (415)
T ss_dssp             HHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEES-----------SCEEEEEECTTSSEEE
T ss_pred             HHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCC-----------CcceeeEEcCCCCEEE
Confidence            3              25666666654      7999999974 3445554443           3589999999999999


Q ss_pred             EEeCCC---eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE-EEeCCCc--EEEEECCCCcEEEEEeCCCCeEEEE
Q psy2110         211 VGCNDG---RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII-SASTDNN--VCIWDVLTGECEQKYRFPSPILKVQ  284 (622)
Q Consensus       211 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~  284 (622)
                      +++.++   .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.++.  |++||+.+++......+...+.+++
T Consensus       195 ~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~  273 (415)
T 2hqs_A          195 YVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT  273 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred             EEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence            998875   9999999988765 5667888999999999999888 5655554  9999999988766556778899999


Q ss_pred             EeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC---CeEEEEeCCCccEEEEEe
Q psy2110         285 FHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK---GKVLVLSCPALELKASFK  359 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~  359 (622)
                      |+|+++.+++++..++  .+++||+.++.. ..+..+...+..++|+|+|++|++++.+   +.|++||+.+++.. .+.
T Consensus       274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~  351 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS  351 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred             ECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence            9999997777765555  577778876543 3344556678899999999999988764   58999999988774 455


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         360 ASTTAIKSIEFARRGNCLLVNTGDR---LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      .+. .+.+++|+|+|++|++++.++   .|++||+..          .....+..  ....+.+++|+|.-.
T Consensus       352 ~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g----------~~~~~l~~--~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          352 STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG----------RFKARLPA--TDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS----------CCEEECCC--SSSEEEEEEECCCCC
T ss_pred             CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC----------CcEEEeeC--CCCCCcCCccccccc
Confidence            554 899999999999999988776   799999863          23333433  234567889999654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=2.1e-27  Score=258.97  Aligned_cols=350  Identities=10%  Similarity=0.092  Sum_probs=243.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-  162 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-  162 (622)
                      ..+++|||||+++++ +. ++.|++||+.+++....+.+|....              ..|.+++|||||++|++++.+ 
T Consensus        19 ~~~~~~spdg~~~~~-~~-dg~i~~~d~~~g~~~~~~~~~~~~~--------------~~v~~~~~SpDg~~l~~~~~~~   82 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQ-KGTVRLWNVETNTSTVLIEGKKIES--------------LRAIRYEISPDREYALFSYNVE   82 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CS-SSCEEEBCGGGCCCEEEECTTTTTT--------------TTCSEEEECTTSSEEEEEESCC
T ss_pred             ccccEEcCCCcEEEE-eC-CCCEEEEECCCCcEEEEeccccccc--------------cccceEEECCCCCEEEEEecCc
Confidence            457899999997766 44 5899999999999888887776420              012599999999999999764 


Q ss_pred             --------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         163 --------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       163 --------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                              +.|++||+.+++. ..+......        ...+..++|||||+.|++++. +.|++|++.+++..+....
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~--------~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS--------NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCCC-EECCCTTCC--------SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             cceeecceeeEEEEECCCCce-EeccCCccc--------cccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence                    7888999998865 222221100        012567899999999999885 7999999998887766655


Q ss_pred             CCcCe------------------eEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE
Q psy2110         235 HMHPV------------------CSISWSRNGYKIISASTD-NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       235 ~~~~v------------------~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  295 (622)
                      +...+                  .+++|||||++|++++.+ +.+.+|++.....    .....+..+.|.++|..    
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~~----  224 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYPTVKPYHYPKAGSE----  224 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSCCCEEEECCBTTSC----
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCCcceeccCCCCCCC----
Confidence            44433                  789999999999988765 4677777643211    12235778888887752    


Q ss_pred             eeCCCcEEEEEecCCceeecccCC------CCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCccEEEEEec-CCCC
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDED------SDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALELKASFKA-STTA  364 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~-~~~~  364 (622)
                       ..+..+++||+.++.....+..+      ...+..++|+|||+++++...    +..|++||+.++++...+.. +...
T Consensus       225 -~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~  303 (723)
T 1xfd_A          225 -NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW  303 (723)
T ss_dssp             -CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             -CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence             23457899999887654444433      566788999999998877643    35799999999987776654 3333


Q ss_pred             E----EEEEEcCCCCEEEEE--eCCC------cEEEEec-ccccccCCCCCCCcceeeeccccceeee-eEEEcCCCCeE
Q psy2110         365 I----KSIEFARRGNCLLVN--TGDR------LIRVYNH-QEVLNAGKDGDPEPIQKLQDLVNKTMWK-KCCFSGDGEYV  430 (622)
Q Consensus       365 i----~~~~~s~~~~~l~~~--~~d~------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l  430 (622)
                      +    ..++|+|||+.|++.  ..++      .|++||+ ..       +.......+..  ....+. .++|||||++|
T Consensus       304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~-------~~~~~~~~l~~--~~~~~~~~~~~spdg~~l  374 (723)
T 1xfd_A          304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN-------SSNDNIQSITS--GDWDVTKILAYDEKGNKI  374 (723)
T ss_dssp             CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-------SSSCCCCBSCC--SSSCEEEEEEEETTTTEE
T ss_pred             EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC-------CCccceeEeec--CCeEEEeeeEEcCCCCEE
Confidence            3    378999999987764  4566      4666773 31       11000222221  112223 35899999999


Q ss_pred             EEeeCCC--CeEEEEECCCC--eeEEEEec---CCCCceeEEEECCCCCEEEEEe
Q psy2110         431 CAGSARQ--HALYIWEKSVG--NLVKILHG---TKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       431 ~~~~~~d--~~i~iwd~~~~--~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      +..+.++  +.++||++...  .....+..   |... +..++|+|++++|+...
T Consensus       375 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT-YFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC-CCEEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCC-eEEEEECCCCCEEEEEc
Confidence            8777645  78899987642  23344443   3444 88999999999887764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.3e-25  Score=220.17  Aligned_cols=288  Identities=12%  Similarity=0.099  Sum_probs=214.7

Q ss_pred             EEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCC
Q psy2110         148 AFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLT  225 (622)
Q Consensus       148 ~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~  225 (622)
                      .|.++++ .+++++.++.|++||..+++....+..+.           ..+ .++|+|+|+++++++. ++.|.+||+.+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~   71 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----------DFV-DTAITSDCSNVVVTSDFCQTLVQIETQL   71 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----------CEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC-----------Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            4555555 46778889999999999988776665432           235 8999999997776665 88999999999


Q ss_pred             Cce-EEEeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         226 RGI-AKIISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       226 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      ++. ...+..+..+..+++|+|+|++|+++..++   .|.+||+.+++.+..+........++|+|+++.++++...++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           72 EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence            987 777777777666699999999999555543   8999999999999988888888999999999988888888788


Q ss_pred             -EEEEEecCCcee----ecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccE---EEEEecCCCCEEEEEEcC
Q psy2110         302 -AVLVDTDGDHQI----VPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALEL---KASFKASTTAIKSIEFAR  372 (622)
Q Consensus       302 -i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~  372 (622)
                       +.+|++.....+    ............++|+|+|+++++++ .++.|.+||+.+++.   +..+..+ ..+..++|+|
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp  230 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR  230 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence             999998754332    11123345578899999999765554 688999999999887   7777654 6678999999


Q ss_pred             CCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc--ccc---eeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         373 RGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--VNK---TMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       373 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      +|++|++++ .++.|.+||+....       ...+..+...  ...   .....++|+|||++|++++.+++.|.+||+.
T Consensus       231 dg~~l~v~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          231 DGSTVYVLTESTVDVFNFNQLSGT-------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             TSSEEEEECSSEEEEEEEETTTTE-------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCc-------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            999877765 47789999987321       1112222211  001   1113579999999998887768899999998


Q ss_pred             CCeeEEEEec
Q psy2110         447 VGNLVKILHG  456 (622)
Q Consensus       447 ~~~~~~~~~~  456 (622)
                      ... +..+.+
T Consensus       304 ~~~-~~~~~~  312 (331)
T 3u4y_A          304 GKV-VGYVAG  312 (331)
T ss_dssp             SCE-EEECTT
T ss_pred             CCc-ccceec
Confidence            654 333433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=1.1e-26  Score=253.33  Aligned_cols=324  Identities=11%  Similarity=0.141  Sum_probs=223.4

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM   83 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (622)
                      +.+++|||||+++++ +.||+|++||+.+++..                .+.....            .       ....
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~----------------~~~~~~~------------~-------~~~~   62 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST----------------VLIEGKK------------I-------ESLR   62 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------EEECTTT------------T-------TTTT
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------EEecccc------------c-------cccc
Confidence            578899999998877 68999999997654321                1111100            0       0013


Q ss_pred             eeEEEEcCCCCEEEEecCC--------CCeEEEEEcCCCceEEEEec---cCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          84 WKKCCFSGDGEYVCAGSAR--------QHALYIWEKSVGNLVKILHG---TKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~--------~~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      +.+++|||||++|++++.+        ++.|++||+.+++. ..+..   |...+                 ..++||||
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~-----------------~~~~~SPd  124 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKL-----------------QYAGWGPK  124 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCC-----------------SBCCBCSS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccc-----------------cccEECCC
Confidence            4679999999999998753        26899999998876 33432   32224                 48899999


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCC-ccccc------ccccceEEEEECCCCCEEEEEeCCC---------
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE-FDGAL------DCISLAVTCAFNKRGTLLAVGCNDG---------  216 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~v~~~~~s~~g~~l~~~~~dg---------  216 (622)
                      |++||+++. +.|++|++.+++.......+.... ..+..      .....+.+++|||||++|++++.++         
T Consensus       125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence            999999886 799999999887655443322110 00000      0001247899999999999987543         


Q ss_pred             -------------------------eEEEEEcCCCceEEEeccC------CcCeeEEEEcCCCCEEEEEeC----CCcEE
Q psy2110         217 -------------------------RIVLWDFLTRGIAKIISAH------MHPVCSISWSRNGYKIISAST----DNNVC  261 (622)
Q Consensus       217 -------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~----d~~i~  261 (622)
                                               .|++||+.+++....+..+      ...+.+++|+|||++|++...    +..|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                                     7999999988866666654      678999999999998877653    35799


Q ss_pred             EEECCCCcEEEEEe--CCCCe----EEEEEeCCCCeEEEE-eeCCC------cEEEEEe-cCCc--eeecccCCCCceE-
Q psy2110         262 IWDVLTGECEQKYR--FPSPI----LKVQFHPRNDHMFLV-CPMRH------AAVLVDT-DGDH--QIVPIDEDSDLSI-  324 (622)
Q Consensus       262 iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~~~~~-~~~~~------~i~~~d~-~~~~--~~~~~~~~~~~~~-  324 (622)
                      +||+.++++...+.  +...+    ..++|+|+|+.+++. +..++      .+++||. .+..  ....+......+. 
T Consensus       284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  363 (723)
T 1xfd_A          284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (723)
T ss_dssp             EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe
Confidence            99999998877654  23333    378999999988876 55666      4666663 3333  1444443333344 


Q ss_pred             EEEEeeCCCEEEEEecC---CeEEEEeCCCcc--EEEEEec---CCCCEEEEEEcCCCCEEEEEeC
Q psy2110         325 VASFDRRGQHVVTGNSK---GKVLVLSCPALE--LKASFKA---STTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      .++|+|+|+.|+..+.+   +.+++|++....  ....+..   |...+..++|+|+|++|+....
T Consensus       364 ~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            46899999999766554   788999875422  3333443   5667889999999999887654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=2.2e-26  Score=250.02  Aligned_cols=330  Identities=12%  Similarity=0.091  Sum_probs=220.9

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceE-EEEeccCcceeEEEEeecC-ccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLV-KILHGTKGELLLDVVEFDG-ALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      .+.|+  |+.+++++.+ + | +||+.+++.+ ..+..|..... .....++ .......|.+++|+|| +.++.+. ++
T Consensus        30 ~~~w~--g~~~~~~~~~-~-i-~~d~~tg~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~  101 (706)
T 2z3z_A           30 GLQWM--GDNYVFIEGD-D-L-VFNKANGKSAQTTRFSAADLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG  101 (706)
T ss_dssp             TCEEE--TTEEEEEETT-E-E-EEEC-------CEEEEHHHHHT-TC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred             CCcCc--CCeEEEEeCC-c-E-EEECCCCcEeeEEeechhHhhh-hccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence            46787  5566666644 5 8 9999999873 44444331100 0000000 0000123479999999 6665554 59


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-----CceEEEeccCCcC
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-----RGIAKIISAHMHP  238 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~  238 (622)
                      .|++||+.+++........            ..+..++|+|||++|+++ .++.|++|++.+     ++.......+...
T Consensus       102 ~i~~~d~~~~~~~~l~~~~------------~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~  168 (706)
T 2z3z_A          102 GLVGFDMLARKVTYLFDTN------------EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET  168 (706)
T ss_dssp             EEEEEETTTTEEEEEECCT------------TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred             EEEEEECCCCceEEccCCc------------ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence            9999999887654333221            124567999999999986 679999999998     7766544444333


Q ss_pred             --------------eeEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCcEE
Q psy2110         239 --------------VCSISWSRNGYKIISAS---------------------------------TDNNVCIWDVLTGECE  271 (622)
Q Consensus       239 --------------v~~~~~s~~~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~  271 (622)
                                    +.+++|+|||++|++++                                 .+..|++||+.+++..
T Consensus       169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~  248 (706)
T 2z3z_A          169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV  248 (706)
T ss_dssp             EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred             eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence                          48999999999999987                                 4467999999998876


Q ss_pred             EEEe---CCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEEecCCceeeccc--CCC---CceEEEEEee--CCCEEEE
Q psy2110         272 QKYR---FPSPILKVQFHPRNDHMFLVCPMR----HAAVLVDTDGDHQIVPID--EDS---DLSIVASFDR--RGQHVVT  337 (622)
Q Consensus       272 ~~~~---~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~--~~~---~~~~~~~~~~--~~~~l~~  337 (622)
                      ....   +...+.+++|+|+++.++++....    ..+++||+.++.....+.  .+.   ..+..++|+|  +|+++++
T Consensus       249 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence            5542   446689999999999766654432    389999998873322221  111   1235679999  9999999


Q ss_pred             EecCCeEEEEeCC-CccEEEEEecCCCCEEE-EEEcCCCCEEEEEeCC-C----cEEEEecccccccCCCCCCCcceeee
Q psy2110         338 GNSKGKVLVLSCP-ALELKASFKASTTAIKS-IEFARRGNCLLVNTGD-R----LIRVYNHQEVLNAGKDGDPEPIQKLQ  410 (622)
Q Consensus       338 ~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d-~----~i~i~d~~~~~~~~~~~~~~~~~~~~  410 (622)
                      ++.+|.+++|.+. ++..+..+..+...+.+ ++|+|+++.|++++.+ +    .|+.|++..       +   ....+.
T Consensus       329 ~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-------~---~~~~l~  398 (706)
T 2z3z_A          329 SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-------G---KTKDLT  398 (706)
T ss_dssp             ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-------C---CCEESC
T ss_pred             EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-------C---Cceecc
Confidence            9999988888876 67777888888777877 7999999988776654 3    466666552       1   122222


Q ss_pred             ccccceeeeeEEEcCCCCeEEEeeCCC---CeEEEEECCCCe
Q psy2110         411 DLVNKTMWKKCCFSGDGEYVCAGSARQ---HALYIWEKSVGN  449 (622)
Q Consensus       411 ~~~~~~~~~~~~~spdg~~l~~~~~~d---~~i~iwd~~~~~  449 (622)
                         ....+..++|||||++|+....+.   +.|++||+.+++
T Consensus       399 ---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          399 ---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence               223456789999999998775423   569999999887

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=7.1e-25  Score=216.02  Aligned_cols=298  Identities=13%  Similarity=0.094  Sum_probs=204.3

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-CeEEEEEcC--CCc--eE
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLWDFL--TRG--IA  229 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~i~iwd~~--~~~--~~  229 (622)
                      ++++++.++.|++|++........+.....         ...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~   77 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDV---------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA   77 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEec---------CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence            344447799999999963211111111101         1236789999999999888876 999999997  554  33


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECC---CCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVL---TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      ..+..+. .+..++|+|++++|++++. ++.|.+||+.   +.+....+.....+.+++|+|+++.+++++..++.+.+|
T Consensus        78 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           78 AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence            4454443 7899999999998877765 7889999994   444555566667789999999999877777689999999


Q ss_pred             EecC-Cceee----ccc-CCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCC--ccE--EEEEec---C---CCCEEEE
Q psy2110         306 DTDG-DHQIV----PID-EDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPA--LEL--KASFKA---S---TTAIKSI  368 (622)
Q Consensus       306 d~~~-~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~~---~---~~~i~~~  368 (622)
                      |+.. +....    ... .....+..++|+|+++++++++ .++.|.+|++..  ++.  ...+..   .   ...+..+
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            9987 43221    122 2344677899999999776554 789999999953  433  333321   1   2356789


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEE--EC
Q psy2110         369 EFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW--EK  445 (622)
Q Consensus       369 ~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw--d~  445 (622)
                      +|+|+|++|+++. .++.|++|++...     .+....+..+.   ....+..++|+|+|++|++++..++.|.+|  |.
T Consensus       237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          237 HITPDGRHLYACDRTASLITVFSVSED-----GSVLSKEGFQP---TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTT-----SCCEEEEEEEE---CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEcCC-----CCceEEeeeec---CCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9999999887655 6899999999720     01112222222   222256789999999999988668999999  55


Q ss_pred             CCCee--EEEEecCCCCceeEEEECCCCC
Q psy2110         446 SVGNL--VKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       446 ~~~~~--~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                      .+++.  +..+...  ....+++|.|+.+
T Consensus       309 ~~g~~~~~~~~~~g--~~p~~i~~~~~~~  335 (343)
T 1ri6_A          309 EQGLLHEKGRYAVG--QGPMWVVVNAHEG  335 (343)
T ss_dssp             TTTEEEEEEEEECS--SSCCEEEEEEEC-
T ss_pred             CCceeeEccccccC--CCCeeEEEEcccC
Confidence            56654  3344432  2277888877643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.5e-24  Score=212.01  Aligned_cols=280  Identities=10%  Similarity=0.131  Sum_probs=222.7

Q ss_pred             cceeEEEEcCCCCEEEEecCC------CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          82 TMWKKCCFSGDGEYVCAGSAR------QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~------~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      ..+..++|+|++++|++++.+      ++.|.+||..+++.+..+......                  ..++|+|++++
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~s~dg~~  102 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP------------------FGATINNTTQT  102 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC------------------CSEEEETTTTE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc------------------ceEEECCCCCE
Confidence            345679999999999887754      478999999999988888764443                  38899999996


Q ss_pred             EEE-eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceEEEe
Q psy2110         156 LAV-GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       156 l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~~~~~~~~~~  232 (622)
                      +++ ...++.|.+||..+++....+..+......  ......+.+++|+|+|+++++++  .++.|.+||+.+++....+
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~  180 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE--EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI  180 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS--SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc--ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence            554 455799999999998877766553221100  00011367899999999887776  4788999999999998888


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEe
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-----PSPILKVQFHPRNDHMFLVCPMRHAAVLVDT  307 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~  307 (622)
                      ..+...+.+++|+|+|++|++++.++.|.+||+.+++....+..     ...+..++|+|+++.++++...++.+.+||.
T Consensus       181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT  260 (353)
T ss_dssp             CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred             cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            76666789999999999999999999999999999998887764     3457789999999988888877899999999


Q ss_pred             cCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         308 DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      .+.+.+..+.....  ..++|+|+|+++++++ .++.|.+||..+++.+..+... ..+.+++|+|+|++|+++..++
T Consensus       261 ~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          261 RNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             TTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred             CCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence            88877666554332  4689999999766655 6899999999999988887754 4678999999999887776553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=2.2e-24  Score=212.49  Aligned_cols=267  Identities=13%  Similarity=0.251  Sum_probs=192.8

Q ss_pred             CEEEEecCCCCeEEEEEcC-CCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-CcEEEEe
Q psy2110          94 EYVCAGSARQHALYIWEKS-VGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-GRIVLWD  169 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~vw~  169 (622)
                      +++++++..++.|++|++. +++  .+..+ .|...+                 .+++|+|++++|++++.+ +.|++|+
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~-----------------~~~~~spdg~~l~~~~~~~~~v~~~~   66 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQV-----------------QPMVVSPDKRYLYVGVRPEFRVLAYR   66 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCC-----------------CCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCC-----------------ceEEECCCCCEEEEeecCCCeEEEEE
Confidence            4455543335999999995 342  22222 344444                 489999999999988886 9999999


Q ss_pred             cC--Ccccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcC---CCceEEEeccCCcCeeE
Q psy2110         170 FL--TRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFL---TRGIAKIISAHMHPVCS  241 (622)
Q Consensus       170 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~  241 (622)
                      +.  ++...  ..+...            ..+..++|+|+|++|++++. ++.|.+|++.   +.+....+..+ ..+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~  133 (343)
T 1ri6_A           67 IAPDDGALTFAAESALP------------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHS  133 (343)
T ss_dssp             ECTTTCCEEEEEEEECS------------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCC
T ss_pred             ecCCCCceeeccccccC------------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceE
Confidence            97  44432  222211            13578899999998877665 8889999994   34445555544 46889


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEECCC-CcEEEE----Ee--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--Cc
Q psy2110         242 ISWSRNGYKIISAS-TDNNVCIWDVLT-GECEQK----YR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DH  311 (622)
Q Consensus       242 ~~~s~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~  311 (622)
                      ++|+|++++|++++ .++.|++||+.+ ++....    +.  ....+..++|+|+++.+++++..++.+.+|++..  +.
T Consensus       134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  213 (343)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             EEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            99999999888887 789999999987 655432    22  3457889999999998888888899999999954  21


Q ss_pred             e--eec---ccCC---CCceEEEEEeeCCCEEEEEe-cCCeEEEEeCC----CccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         312 Q--IVP---IDED---SDLSIVASFDRRGQHVVTGN-SKGKVLVLSCP----ALELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       312 ~--~~~---~~~~---~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      .  ...   +...   ...+..++|+|+|++|+++. .++.|.+|++.    +.+.+..+..+.. +.+++|+|+|++|+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~  292 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLI  292 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEE
Confidence            1  111   1111   23566799999999887544 78999999998    3345555555544 88999999999998


Q ss_pred             EEe-CCCcEEEEecc
Q psy2110         379 VNT-GDRLIRVYNHQ  392 (622)
Q Consensus       379 ~~~-~d~~i~i~d~~  392 (622)
                      +++ .++.|.+|+++
T Consensus       293 ~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          293 AAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTTCEEEEEEEE
T ss_pred             EecCCCCeEEEEEEc
Confidence            887 57999999765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=9.4e-24  Score=208.90  Aligned_cols=267  Identities=10%  Similarity=0.101  Sum_probs=217.0

Q ss_pred             ceEEEEECCCCCEEEEEeC-------CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q psy2110         196 LAVTCAFNKRGTLLAVGCN-------DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLT  267 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~  267 (622)
                      .+..++|+|+|+++++++.       ++.|.+||..+++....+... ..+..++|+++|++++.++ .++.|.+||..+
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            3678999999999888874       468999999999988877653 4578899999999666554 478999999999


Q ss_pred             CcEEEEEeCCC----------CeEEEEEeCCCCeEEEEe-eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEE
Q psy2110         268 GECEQKYRFPS----------PILKVQFHPRNDHMFLVC-PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       268 ~~~~~~~~~~~----------~v~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (622)
                      ++.+..+....          .+.+++|+|+++.++++. ..++.+.+||..+......+..+...+..++|+|+|++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  200 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY  200 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEE
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEE
Confidence            99988887432          268899999999877776 4578899999998888777775566677899999999999


Q ss_pred             EEecCCeEEEEeCCCccEEEEEec----CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeec
Q psy2110         337 TGNSKGKVLVLSCPALELKASFKA----STTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQD  411 (622)
Q Consensus       337 ~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  411 (622)
                      +++.++.|.+||+.+++.+..+..    +...+.+++|+|+++++++++. ++.|.+||+..         .+.+..+..
T Consensus       201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---------~~~~~~~~~  271 (353)
T 3vgz_A          201 TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN---------GNILAKVAA  271 (353)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT---------CCEEEEEEC
T ss_pred             EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC---------CcEEEEEEc
Confidence            999999999999999998887774    5566889999999998877765 58999999973         233344432


Q ss_pred             cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ..    ...++|+|+|++++++...++.|.+||..+++.+..+..+. . +.+++|+|++++|+.+.
T Consensus       272 ~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          272 PE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-H-PNSLALSADGKTLYVSV  332 (353)
T ss_dssp             SS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-E-EEEEEECTTSCEEEEEE
T ss_pred             CC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-C-CCeEEEcCCCCEEEEEE
Confidence            21    14589999999887777668999999999999988887654 3 89999999999777665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.5e-24  Score=210.00  Aligned_cols=275  Identities=14%  Similarity=0.098  Sum_probs=201.8

Q ss_pred             EECCCCCE-EEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcE-EEEEeCC
Q psy2110         201 AFNKRGTL-LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGEC-EQKYRFP  277 (622)
Q Consensus       201 ~~s~~g~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~  277 (622)
                      .|.+++++ +++++.++.|.+||+.+++....+..+...+ .++|+|+|+++++++. ++.|++||+.+++. ...+...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45555555 6677788999999999999888887766667 9999999997777766 78999999999987 6666644


Q ss_pred             CCeEE-EEEeCCCCeEEEEeeCC-C--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEE-ecCCe-EEEEeCCC
Q psy2110         278 SPILK-VQFHPRNDHMFLVCPMR-H--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTG-NSKGK-VLVLSCPA  351 (622)
Q Consensus       278 ~~v~~-~~~~~~~~~~~~~~~~~-~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~  351 (622)
                      ..... ++|+|+++.++ ++..+ +  .+.+||+.+...+..+..+ .....++|+|+|++++++ ..++. |.+|++..
T Consensus        83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            44455 99999999766 44444 3  8999999988776665543 345899999999866554 55577 99999875


Q ss_pred             ccEE----EEEecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCc---ceeeeccccceeeeeEEE
Q psy2110         352 LELK----ASFKASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEP---IQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       352 ~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  423 (622)
                      ...+    ............++|+|+|+++++++ .++.|++||+..         ...   +..+.   .......++|
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~---------~~~~~~~~~~~---~~~~~~~~~~  228 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN---------PENITLLNAVG---TNNLPGTIVV  228 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS---------TTSCEEEEEEE---CSSCCCCEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC---------Ccccceeeecc---CCCCCceEEE
Confidence            4322    12223445689999999999776665 588999999873         222   33333   2244467899


Q ss_pred             cCCCCeEEEeeCCCCeEEEEECCCCee--EEEEecC----CC--CceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110         424 SGDGEYVCAGSARQHALYIWEKSVGNL--VKILHGT----KG--ELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV  490 (622)
Q Consensus       424 spdg~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~----~~--~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~  490 (622)
                      +|||++|+++...++.|.+||+.+++.  +..+..+    ..  .....++|+|++++|+.++  ++.|.+|++...
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            999998887766578899999999887  4444332    11  1134589999999887665  679999999743

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=9.7e-25  Score=237.08  Aligned_cols=324  Identities=11%  Similarity=0.056  Sum_probs=223.7

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccc-cccccccCC------CcccccccccceEEEEECCCCCEEEEEeCCCeE
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISAHMHP------EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI  218 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  218 (622)
                      .+.|.  |..+++++.++ | +||+.+++.+ ..+..+...      ...........+.+++|+|| +.++.+. ++.|
T Consensus        30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i  103 (706)
T 2z3z_A           30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGL  103 (706)
T ss_dssp             TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEE
T ss_pred             CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEE
Confidence            56777  66777777777 8 9999998773 333222100      00000000124789999999 6666664 5999


Q ss_pred             EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CcEEEEEeCCCC--------------
Q psy2110         219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-----GECEQKYRFPSP--------------  279 (622)
Q Consensus       219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~--------------  279 (622)
                      ++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+     ++..+.......              
T Consensus       104 ~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~  181 (706)
T 2z3z_A          104 VGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFG  181 (706)
T ss_dssp             EEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTT
T ss_pred             EEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcC
Confidence            999998876544 44567789999999999999996 579999999998     877665443322              


Q ss_pred             -eEEEEEeCCCCeEEEEee--------------------------------CCCcEEEEEecCCceeecc--cCCCCceE
Q psy2110         280 -ILKVQFHPRNDHMFLVCP--------------------------------MRHAAVLVDTDGDHQIVPI--DEDSDLSI  324 (622)
Q Consensus       280 -v~~~~~~~~~~~~~~~~~--------------------------------~~~~i~~~d~~~~~~~~~~--~~~~~~~~  324 (622)
                       +.++.|+||++.++++..                                .+..+++||+.++......  ..+...+.
T Consensus       182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence             478999999997766652                                3457999999887654433  24566788


Q ss_pred             EEEEeeCCCEEEEEecCC-----eEEEEeCCCccEEEEEe--cCCC---CEEEEEEcC--CCCEEEEEeCCCcEEEEecc
Q psy2110         325 VASFDRRGQHVVTGNSKG-----KVLVLSCPALELKASFK--ASTT---AIKSIEFAR--RGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~i~~~~~s~--~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .++|+|+|++|++++.++     .|++||+.+++....+.  .+..   .+.+++|+|  +|+++++++.++.+++|.++
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            999999999999987765     89999999984333332  2222   246789999  99999888889999999876


Q ss_pred             cccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCCC----eEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110         393 EVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQH----ALYIWEKSVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                      .        ....+..+...  ...+.. ++|+|||+.|+.++.+++    .|+.||..+++ ...+. +... +.+++|
T Consensus       342 ~--------~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~-~~~~~~  408 (706)
T 2z3z_A          342 T--------TGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESG-MHRTQL  408 (706)
T ss_dssp             T--------TSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSS-EEEEEE
T ss_pred             C--------CCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCc-eEEEEE
Confidence            2        11223333222  223344 699999999887776554    78888888776 34444 4444 899999


Q ss_pred             CCCCCEEEEEe-C----CcEEEeecCCc
Q psy2110         468 HPVRPIIASIS-S----GVVSLWAQNQV  490 (622)
Q Consensus       468 sp~~~~l~s~~-d----g~v~iw~~~~~  490 (622)
                      +|++++|+... +    +.|++|++.+.
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            99999887764 3    56999998643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=3.7e-24  Score=205.92  Aligned_cols=250  Identities=10%  Similarity=0.109  Sum_probs=194.5

Q ss_pred             CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC-ccccccccc
Q psy2110         103 QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISA  181 (622)
Q Consensus       103 ~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~  181 (622)
                      ++.|++||+.+++.. .+..|...+                 .+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus        21 ~~~i~~~d~~~~~~~-~~~~~~~~v-----------------~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMR-VVWQTPELF-----------------EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             CEEEEEEETTTTEEE-EEEEESSCC-----------------EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred             ceeEEEEeCCCCcee-eeccCCcce-----------------EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence            589999999988766 455577666                 5999999999999987 78999999998 766554433


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEE--cCCCceEEEeccCCcCeeEEEEcCCCCEEE-EEeC
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWD--FLTRGIAKIISAHMHPVCSISWSRNGYKII-SAST  256 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~  256 (622)
                      +..          ..+.+++|+|+|++|++++.  ++...+|.  +.++. ...+..+ ..+..++|+|++++|+ +++.
T Consensus        82 ~~~----------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           82 FAT----------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             TCC----------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEE
T ss_pred             ccc----------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECC
Confidence            311          23677899999999999983  34455554  44444 4445444 3489999999999887 6778


Q ss_pred             CCcEEEEEC--CCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-CCceeecccCCCCceEEEEEeeCCC
Q psy2110         257 DNNVCIWDV--LTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       257 d~~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                      ++.+++|++  .+++......+...+.+++|+|+++.+++++..++.+.+|++. .......+..+...+..++|+|+|+
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  229 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD  229 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence            898888885  4555555555778899999999999877777778899999987 4556666777777888999999999


Q ss_pred             EEEEEecC-----------CeEEEEeCCCccE--EEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         334 HVVTGNSK-----------GKVLVLSCPALEL--KASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       334 ~l~~~~~d-----------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      +|++++.+           +.|++||+.+++.  +..+..|...+.+++|+|++++|++++.+
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            99888765           5699999988765  44455788889999999999999988765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.5e-23  Score=205.85  Aligned_cols=277  Identities=11%  Similarity=0.087  Sum_probs=211.3

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEe
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      ++|++++.++.|++||+.+++....+......         ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~   72 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---------PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---------TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC---------CCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence            47899999999999999998777665433210         0146789999998765 4555789999999999887766


Q ss_pred             ccC-----CcCeeEEEEcCCCCEEEEEe------------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE
Q psy2110         233 SAH-----MHPVCSISWSRNGYKIISAS------------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       233 ~~~-----~~~v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  295 (622)
                      ...     ...+.+++|+|+|++|++++            .++.|.+||+.+++....+.....+..++|+|+++.++++
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred             EcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe
Confidence            532     22678899999999999886            5799999999999988888877778899999999876666


Q ss_pred             eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCC------------------------eEEEEeCCC
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG------------------------KVLVLSCPA  351 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~  351 (622)
                         ++.+.+||+.+......+..+... ..+.|+|+++.++..+..+                        .|.+||+.+
T Consensus       153 ---~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          153 ---GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             ---SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             ---CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence               688999999988766555443311 1226789988766544332                        478999998


Q ss_pred             ccEE-EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110         352 LELK-ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV  430 (622)
Q Consensus       352 ~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  430 (622)
                      ++.. ..+..+...+.+++|+|++++++++  ++.|++||+..         .+.+..+..   .....+++|+|+|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~---------~~~~~~~~~---~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK---------NASIKRVPL---PHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT---------TEEEEEEEC---SSCCCEEEECTTSCEE
T ss_pred             CCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC---------CcCcceecC---CCceeeEEECCCCCEE
Confidence            8864 2344566778899999999998888  78999999873         233333332   2234678999999999


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      ++++. ++.|++||+.+++.+..+..+.
T Consensus       295 ~~~~~-~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          295 WLGGA-LGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEESB-SSEEEEEETTTCCEEEEEECGG
T ss_pred             EEEcC-CCcEEEEECcCCcEEEEEEcCC
Confidence            98876 8999999999999988887653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=234.71  Aligned_cols=329  Identities=11%  Similarity=0.080  Sum_probs=228.2

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcc---eeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE---LLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-  161 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-  161 (622)
                      .++|+|||++++++.  ++.|++||+.+++....+.+|...   +                 .+++|||||++|++++. 
T Consensus        20 ~~~~s~dg~~~~~~~--d~~i~~~~~~~g~~~~~~~~~~~~~~~~-----------------~~~~~SpDg~~la~~~~~   80 (719)
T 1z68_A           20 FPNWISGQEYLHQSA--DNNIVLYNIETGQSYTILSNRTMKSVNA-----------------SNYGLSPDRQFVYLESDY   80 (719)
T ss_dssp             CCEESSSSEEEEECT--TSCEEEEESSSCCEEEEECHHHHHTTTC-----------------SEEEECTTSSEEEEEEEE
T ss_pred             ccEECCCCeEEEEcC--CCCEEEEEcCCCcEEEEEccccccccce-----------------eeEEECCCCCeEEEEecC
Confidence            589999997666653  489999999999988777766441   3                 59999999999998876 


Q ss_pred             --------CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-
Q psy2110         162 --------DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-  232 (622)
Q Consensus       162 --------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-  232 (622)
                              ++.|++||+.+++.+......            ..+..++|||||+.|+++. ++.|++|++.+++..+.. 
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~  147 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRGNELP------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF  147 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCCC------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC
T ss_pred             ceeEEeecceEEEEEECCCCccccceecC------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec
Confidence                    789999999988662111111            1356789999999999886 789999999888765433 


Q ss_pred             ccCCcCe-----------------eEEEEcCCCCEEEEEeCCC----------------------------------cEE
Q psy2110         233 SAHMHPV-----------------CSISWSRNGYKIISASTDN----------------------------------NVC  261 (622)
Q Consensus       233 ~~~~~~v-----------------~~~~~s~~~~~l~s~~~d~----------------------------------~i~  261 (622)
                      .++...|                 .+++|||||++|++++.|.                                  .|+
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~  227 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF  227 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence            2222222                 4899999999999987652                                  788


Q ss_pred             EEECCCCcEE---EEE------eCCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEE----ecCCceeecc----cCCC
Q psy2110         262 IWDVLTGECE---QKY------RFPSPILKVQFHPRNDHMFLVCPMR----HAAVLVD----TDGDHQIVPI----DEDS  320 (622)
Q Consensus       262 iwd~~~~~~~---~~~------~~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d----~~~~~~~~~~----~~~~  320 (622)
                      +||+.+++..   ...      .+...+..++|+||++ ++++....    ..+.+||    ..++.....+    ..+.
T Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~  306 (719)
T 1z68_A          228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT  306 (719)
T ss_dssp             EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred             EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence            9999988752   211      1455689999999964 55553322    2488889    6665544444    3455


Q ss_pred             CceE-----EEEEeeCCCEEEE--EecCC--eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----CcE
Q psy2110         321 DLSI-----VASFDRRGQHVVT--GNSKG--KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD-----RLI  386 (622)
Q Consensus       321 ~~~~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i  386 (622)
                      ..+.     .+.|+|+|+.++.  ...+|  .|.+|++.+++ ...+..+...+..+.++ +++.|+..+.+     +.+
T Consensus       307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~  384 (719)
T 1z68_A          307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRR  384 (719)
T ss_dssp             SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred             ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence            5554     7889999986654  43444  67788887776 44565666678888878 88888877765     788


Q ss_pred             EEEecccccccCCCCCCCcceeeec-cc-cceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEe
Q psy2110         387 RVYNHQEVLNAGKDGDPEPIQKLQD-LV-NKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~  455 (622)
                      ++|.+...     .+.. ....+.. .. ....+..+.|+|||++++.....  ...+++||+.+++.+..+.
T Consensus       385 ~l~~~~~~-----~g~~-~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          385 NIYRISIG-----SYPP-SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             EEEEEECS-----SSSC-CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             EEEEEeCC-----CCCC-CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            89987620     0000 1122221 11 12334567999999988865432  2478999998888666554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.1e-23  Score=206.77  Aligned_cols=269  Identities=12%  Similarity=0.108  Sum_probs=206.9

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCc--ceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEec
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKG--ELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDF  170 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~  170 (622)
                      ++|++++.+ +.|.+||+.+++.+..+.....  .+                 ..++|+|++++++ +++.++.|.+||+
T Consensus         2 ~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~   63 (337)
T 1pby_B            2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGPTP-----------------MVPMVAPGGRIAYATVNKSESLVKIDL   63 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCC-----------------CCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cEEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCc-----------------cceEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            467777765 8999999999998888764431  23                 4899999998664 5556789999999


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------------CCCeEEEEEcCCCceEEEeccCCcC
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------------NDGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      .+++....+........      ...+..++|+|+|++|+++.            .++.|.+||+.+++....+.. ...
T Consensus        64 ~~~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~  136 (337)
T 1pby_B           64 VTGETLGRIDLSTPEER------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ  136 (337)
T ss_dssp             TTCCEEEEEECCBTTEE------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred             CCCCeEeeEEcCCcccc------cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence            99877665543210000      01245789999999998886            579999999999888777765 456


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC------------------
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH------------------  300 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------  300 (622)
                      +.+++|+|+|++|+++  ++.|++||+.+++....+........+.|+|++..+++++..++                  
T Consensus       137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            7889999999988888  68999999999998887764332223478999887666554444                  


Q ss_pred             -----cEEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110         301 -----AAVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       301 -----~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  374 (622)
                           .+.+||+.+.+.. ..+..+...+..++|+|+|++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg  291 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDG  291 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTS
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCC
Confidence                 3688898876543 2333455567789999999999988  689999999999888877754 457899999999


Q ss_pred             CEEEEEeCCCcEEEEecc
Q psy2110         375 NCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~  392 (622)
                      ++|++++.++.|++||+.
T Consensus       292 ~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          292 STVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CEEEEESBSSEEEEEETT
T ss_pred             CEEEEEcCCCcEEEEECc
Confidence            999999889999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.9e-23  Score=201.05  Aligned_cols=257  Identities=10%  Similarity=0.052  Sum_probs=194.5

Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccC-
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAH-  235 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-  235 (622)
                      .++.++.|++||+.+++...... +.           ..+.+++|+|+|++|++++ ++.|++||+.+ ++.......+ 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~-~~-----------~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~   83 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQ-TP-----------ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA   83 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEE-ES-----------SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred             CCCcceeEEEEeCCCCceeeecc-CC-----------cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence            45678999999999876553332 22           3578999999999999986 78999999999 8777666665 


Q ss_pred             CcCeeEEEEcCCCCEEEEEeC--CC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-C
Q psy2110         236 MHPVCSISWSRNGYKIISAST--DN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-D  310 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~--d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~  310 (622)
                      ...+.+++|+|++++|++++.  ++  .|..|+..+++ ...+.....+..++|+|+++.+++++..++.+.+|++.. .
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence            367899999999999999983  33  45555555555 344455556899999999998888888899999998753 3


Q ss_pred             ceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCC-CccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----
Q psy2110         311 HQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCP-ALELKASFKASTTAIKSIEFARRGNCLLVNTGD-----  383 (622)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----  383 (622)
                      .....+..+...+..++|+|+|+++++++ .++.+.+|++. .+.....+..+...+.+++|+|+|++|++++.+     
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            34455666777889999999999888766 58889999876 556677777888889999999999999988765     


Q ss_pred             ------CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC
Q psy2110         384 ------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ  437 (622)
Q Consensus       384 ------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d  437 (622)
                            +.|++||+..       +....+..+..  ....+..++|+|+|++|++++.++
T Consensus       243 ~~~~~~~~l~~~d~~~-------~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDG-------GNVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSSEEEEEEEEETTS-------CSCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccCceEEEEEecCC-------CCceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence                  5699999873       12222222222  223456679999999999888644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=8.8e-22  Score=195.33  Aligned_cols=298  Identities=11%  Similarity=0.128  Sum_probs=200.9

Q ss_pred             EcCCCCEEEEee----CCCcEEEEecC--CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeE
Q psy2110         149 FNKRGTLLAVGC----NDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRI  218 (622)
Q Consensus       149 ~s~d~~~l~s~~----~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i  218 (622)
                      ..+...++++|+    .++.|.+|.+.  +++.......+.           ..+..++|+|+|++|++++.+    +.|
T Consensus         9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-----------~~p~~l~~spdg~~l~~~~~~~~~~~~v   77 (361)
T 3scy_A            9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-----------ANPSYLIPSADGKFVYSVNEFSKDQAAV   77 (361)
T ss_dssp             GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-----------SCCCSEEECTTSSEEEEEECCSSTTCEE
T ss_pred             hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-----------CCCceEEECCCCCEEEEEEccCCCCCcE
Confidence            344445666664    45689999774  443322221111           235678999999999998875    799


Q ss_pred             EEEEcCC--Cce--EEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEE----EEEeC-----------CC
Q psy2110         219 VLWDFLT--RGI--AKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECE----QKYRF-----------PS  278 (622)
Q Consensus       219 ~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~----~~~~~-----------~~  278 (622)
                      .+|++..  ++.  +.....+......+++  ++++|++++ .++.|.+|++.....+    ..+.+           ..
T Consensus        78 ~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           78 SAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred             EEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence            9999876  332  3334445566778888  888888776 5789999999754322    11111           12


Q ss_pred             CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------e-------ecccCCCCceEEEEEeeCCCEEEEEe-cCCeE
Q psy2110         279 PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------I-------VPIDEDSDLSIVASFDRRGQHVVTGN-SKGKV  344 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i  344 (622)
                      .+.+++|+|+++.++++...++.+.+|++.....      +       ............++|+|+|+++++++ .++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            3578999999998888887889999999875431      1       11223345567899999999888777 68999


Q ss_pred             EEEeCCCccE--EEEEe---cCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCCCCcceeeecccccee
Q psy2110         345 LVLSCPALEL--KASFK---ASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       345 ~i~d~~~~~~--~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (622)
                      .+|++.+++.  +..+.   .+......++|+|+|++|+++..+  +.|.+|++...     .+....+..+..   ...
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-----~g~~~~~~~~~~---g~~  307 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-----NGTLTKVGYQLT---GIH  307 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-----TCCEEEEEEEEC---SSC
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-----CCcEEEeeEecC---CCC
Confidence            9999987754  33332   233457899999999998777654  88999998620     112122222222   233


Q ss_pred             eeeEEEcCCCCeEEEeeCCCCeEEEE--ECCCCeeEEEEec-CCCCceeEEEEC
Q psy2110         418 WKKCCFSGDGEYVCAGSARQHALYIW--EKSVGNLVKILHG-TKGELLLDVVWH  468 (622)
Q Consensus       418 ~~~~~~spdg~~l~~~~~~d~~i~iw--d~~~~~~~~~~~~-~~~~~v~~v~~s  468 (622)
                      ...++|+|||++|++++..++.|.+|  |..+|++...... +... +.|++|.
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~-p~~v~~~  360 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK-PVCLKFV  360 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS-EEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC-CeEEEEc
Confidence            45789999999999998668899996  5557776544322 2233 8888885

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=6.1e-22  Score=195.47  Aligned_cols=267  Identities=11%  Similarity=0.046  Sum_probs=194.2

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCc-ceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCc
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGR  164 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~  164 (622)
                      ++++++++++++++.+ +.|++||+.+++.+..+..+.. ..                 ..++|+|++++++ ++..++.
T Consensus         5 ~~~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~s~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGP-----------------GTAMMAPDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSS-----------------CEEEECTTSSEEEEEETTTTE
T ss_pred             ccccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCC-----------------ceeEECCCCCEEEEEeCCCCc
Confidence            5788899999988865 8999999999999888876541 22                 4899999998665 5556899


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC------------CeEEEEEcCCCce---E
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------------GRIVLWDFLTRGI---A  229 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------------g~i~iwd~~~~~~---~  229 (622)
                      |.+||+.+++....+.....+...     ...+..++|+|+|++|++++.+            +.|.+||+.+++.   +
T Consensus        67 i~~~d~~t~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANLSSVPGEV-----GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEE-----EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             EEEEeCCCCcEEEEEEcccccccc-----cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence            999999988766555432210000     0125678999999999998865            8999999988543   3


Q ss_pred             EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-------------------------CeEEEE
Q psy2110         230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPS-------------------------PILKVQ  284 (622)
Q Consensus       230 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~  284 (622)
                      ..+.. ...+.+++|+|+|+ +++++  +.|.+||+.+++....+....                         ....++
T Consensus       142 ~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          142 RTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             EEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             eeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            33433 34688999999999 66654  459999999999888776332                         234455


Q ss_pred             EeCCCCe----------EEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCcc
Q psy2110         285 FHPRNDH----------MFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       285 ~~~~~~~----------~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                      +++++..          ++......+.+.+++..         .....+..++++| ++++++++  ++.|.+||+.+++
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~  286 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK  286 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence            6554321          11123334445555442         2445677899999 99999988  7899999999999


Q ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         354 LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       354 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .+..+... ..+.+++|+|++++|++++.++.|++||+.
T Consensus       287 ~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          287 LIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             EEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            88877644 456799999999999988889999999997

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.6e-21  Score=192.29  Aligned_cols=267  Identities=11%  Similarity=0.151  Sum_probs=184.7

Q ss_pred             CCeEEEEEcC--CCceEE-EeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEE--EEE-eCCCCeEEEEE
Q psy2110         215 DGRIVLWDFL--TRGIAK-IISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECE--QKY-RFPSPILKVQF  285 (622)
Q Consensus       215 dg~i~iwd~~--~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~--~~~-~~~~~v~~~~~  285 (622)
                      ++.|.+|.++  +++... ....+...+..++|+|+|+ |++++.   ++.|++|++.+++..  ..+ .+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            4567777765  454432 2334556778899999999 665554   589999999877643  332 25677889999


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEecCC---ceeecccC---------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC-Cc
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDTDGD---HQIVPIDE---------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-AL  352 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~  352 (622)
                      +|+++.++++...++.+.+|++...   ..+..+..         ....+.+++|+|+|+++++...++.|.+|++. ++
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            9999987777778899999999632   22222221         12347789999999966666678899999998 55


Q ss_pred             cEEE--EEec-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeecccc----ceeeeeEEEc
Q psy2110         353 ELKA--SFKA-STTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN----KTMWKKCCFS  424 (622)
Q Consensus       353 ~~~~--~~~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s  424 (622)
                      +...  .+.. .......++|+|+|++|+++ ..++.|++|++...     .+....+..+.....    ......++|+
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TGAFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence            5332  2232 23467889999999977765 55789999998720     011111222222211    1345678999


Q ss_pred             CCCCeEEEeeCCCCeEEEEECCC-C--eeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110         425 GDGEYVCAGSARQHALYIWEKSV-G--NLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQN  488 (622)
Q Consensus       425 pdg~~l~~~~~~d~~i~iwd~~~-~--~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~  488 (622)
                      |||++|+++...++.|.+|++.. +  +.+..+..+... +..++|+|++++|++++  ++.|.+|+++
T Consensus       249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-PRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-CCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-cCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99999866655588999999873 2  455556655444 89999999999888887  5899999764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=7.1e-23  Score=216.90  Aligned_cols=270  Identities=12%  Similarity=0.028  Sum_probs=199.6

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccC-cceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      ...+.+++|+|||++||+++..+|++.||++.+++.. .+..|. ..+                 ..++|+|| ++++++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~-----------------~~~~~spd-~~l~~~   81 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSV-----------------LDPHYGVG-RVILVR   81 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEE-----------------CEECTTCS-EEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeeccccccc-----------------ccccCCCC-eEEEEe
Confidence            3457789999999999998874699999999766554 444444 455                 58999999 777777


Q ss_pred             eC---CCcEEEEecCC--cccccccccccCCCcccccccccceEEEEECCCCCE-EEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         160 CN---DGRIVLWDFLT--RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL-LAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       160 ~~---dg~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      +.   +...++|.+..  ......+....            .+...+|+|+|+. +++...++.+.+||+.+++......
T Consensus        82 ~~~~g~~~~~l~~~~~~~~g~~~~l~~~~------------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~  149 (582)
T 3o4h_A           82 DVSKGAEQHALFKVNTSRPGEEQRLEAVK------------PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR  149 (582)
T ss_dssp             ECSTTSCCEEEEEEETTSTTCCEECTTSC------------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             ccCCCCcceEEEEEeccCCCccccccCCC------------CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec
Confidence            65   45567765543  21111221111            1335578888753 3334445556699999887665554


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--cEEEEEe
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTD----NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--AAVLVDT  307 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~i~~~d~  307 (622)
                      .+.   .+++|+|||++|++++.+    +.|++||+.+++......+...+..++|+|||+.++ ++..++  .|++||+
T Consensus       150 ~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          150 LPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDP  225 (582)
T ss_dssp             ESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECT
T ss_pred             CCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcC
Confidence            333   889999999999988877    789999999998876666778899999999999766 667777  8999999


Q ss_pred             cCCceeecccCCCCceEEEE--------EeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         308 DGDHQIVPIDEDSDLSIVAS--------FDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      .++... .+..+...+..++        |+|+|.++++++.+|.+++|++  ++...   .....+.+++|+ +++++++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence            887766 6666666666566        9999999999999999999999  66544   344678899999 9998888


Q ss_pred             EeCCCc---EEEEecc
Q psy2110         380 NTGDRL---IRVYNHQ  392 (622)
Q Consensus       380 ~~~d~~---i~i~d~~  392 (622)
                      ++.+..   +++|+..
T Consensus       299 ~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          299 HTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEETTEEEEEEEETTC
T ss_pred             EcCCCCCCeEEEEcCC
Confidence            877644   6666654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1.5e-22  Score=214.36  Aligned_cols=268  Identities=12%  Similarity=0.051  Sum_probs=195.9

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEeccCC-cCeeEEEEcCCCCEEEEEeC---CCcEEEEECCC---
Q psy2110         196 LAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGYKIISAST---DNNVCIWDVLT---  267 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~---  267 (622)
                      .|.+++|+|||+.||+++. +|+++||++.+++. ..+..|. ..+..++|+|| +.+++++.   +...++|.+..   
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            5899999999999999887 99999999966654 4455555 68999999999 77777765   44455654432   


Q ss_pred             CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC----Ce
Q psy2110         268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK----GK  343 (622)
Q Consensus       268 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~  343 (622)
                      +... .+.....+...+|+|+++.+++++..++.+.+||+.++........+.   ..++|+|||++|++++.+    +.
T Consensus       101 g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A          101 GEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             TCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred             Cccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence            3322 444444566789999998877777777777799998876544333322   688999999999987776    78


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEecccccccCCCCCCCcceeeeccccc------
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK------  415 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------  415 (622)
                      |++||+.+++.. .+..|...+..++|+|||++|+++..++  .|++||+...         ... .+..+...      
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~~~~~~~  245 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKDFSSYRP  245 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSHHHHHCC
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcChhhhhh
Confidence            999999988765 6678888899999999999999888888  8999998731         111 22211110      


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CC---cEEEeecC
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SG---VVSLWAQN  488 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg---~v~iw~~~  488 (622)
                      ......+|||||.++++++. ++.+++|++  |+.+.   .+.+. +.+++|+ +++++++++ +.   .+++|+..
T Consensus       246 ~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~~---~~~~~-v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          246 TAITWLGYLPDGRLAVVARR-EGRSAVFID--GERVE---APQGN-HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             SEEEEEEECTTSCEEEEEEE-TTEEEEEET--TEEEC---CCSSE-EEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             ccccceeEcCCCcEEEEEEc-CCcEEEEEE--CCeec---cCCCc-eEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            01122349999977777776 899999999  76554   23333 8999999 999888877 53   46666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.5e-21  Score=190.94  Aligned_cols=236  Identities=10%  Similarity=0.133  Sum_probs=170.4

Q ss_pred             eEEEEcCCCCEEEEeeC---CCcEEEEecCCcccc--cccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeE
Q psy2110         145 VTCAFNKRGTLLAVGCN---DGRIVLWDFLTRGIA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRI  218 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~---dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i  218 (622)
                      ..++|+|||+ |++++.   ++.|++|++.++...  ..+..+.           ..+..++|+|+|++|++++ .++.|
T Consensus        43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-----------~~p~~~a~spdg~~l~~~~~~~~~v  110 (347)
T 3hfq_A           43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-----------TPPAYVAVDEARQLVYSANYHKGTA  110 (347)
T ss_dssp             CCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES-----------CCCSEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC-----------CCCEEEEECCCCCEEEEEeCCCCEE
Confidence            4899999999 555544   689999999766432  2211111           2356889999999888887 67999


Q ss_pred             EEEEcCC-Cc--eEEEecc---------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEE--Ee--CCCCeE
Q psy2110         219 VLWDFLT-RG--IAKIISA---------HMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQK--YR--FPSPIL  281 (622)
Q Consensus       219 ~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~--~~--~~~~v~  281 (622)
                      .+|++.. +.  .+..+..         +...+.+++|+|+|+.+++...++.|++|++. +++....  +.  ....+.
T Consensus       111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            9999963 22  2233321         12248889999999966666668899999998 5554332  22  334678


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecC--Cce--eecccCCC------CceEEEEEeeCCCEEEE-EecCCeEEEEeCC
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQ--IVPIDEDS------DLSIVASFDRRGQHVVT-GNSKGKVLVLSCP  350 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~--~~~~~~~~------~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~  350 (622)
                      .++|+|+++.+++++..++.+.+|++..  +..  ...+....      ..+..++|+|+|++|++ ...++.|.+|++.
T Consensus       191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            8999999998888888899999999874  321  11222111      45778999999998754 5568999999987


Q ss_pred             ---CccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110         351 ---ALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQ  392 (622)
Q Consensus       351 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~  392 (622)
                         ..+.+..+..+...+..++|+|+|++|++++. ++.|.+|+++
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence               33556666666667889999999999988876 4889999765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=2.6e-22  Score=218.38  Aligned_cols=330  Identities=8%  Similarity=0.021  Sum_probs=217.7

Q ss_pred             eEEEEccCCcEEEeccCCCeEEEEecccccee------------------cccCceEEeecC---------CceEEEeec
Q psy2110           5 IVASFDRRGQHVVTGNSKGKVLVLSCPALELK------------------ASRGNCLLVNTG---------DRLIRVYNH   57 (622)
Q Consensus         5 ~~~~fspdg~~latg~~dg~v~vwd~~~~~~~------------------~~~~~~l~~~~~---------d~~i~~w~~   57 (622)
                      ..++|+|||++++++ .||+|++||+.+++..                  +++|++|++++.         ++.+++||+
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            367999999887775 5899999998775322                  457888988876         789999998


Q ss_pred             hhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEE-eccCcceeEEEEeecC
Q psy2110          58 QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL-HGTKGELLLDVVEFDG  136 (622)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~  136 (622)
                      .+.....       ...+     ...+.+++|||||++||++.  ++.|++|++.+++..... .++...+.      .|
T Consensus        98 ~~g~~~~-------~~~l-----~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~------~g  157 (719)
T 1z68_A           98 SNGEFVR-------GNEL-----PRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIF------NG  157 (719)
T ss_dssp             TTTEECC-------SSCC-----CSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEE------ES
T ss_pred             CCCcccc-------ceec-----CcccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeE------cc
Confidence            7532200       0111     12356799999999999987  379999999988776533 23332221      01


Q ss_pred             cccc------ccceeEEEEcCCCCEEEEeeCCC----------------------------------cEEEEecCCcccc
Q psy2110         137 ALDC------ISLAVTCAFNKRGTLLAVGCNDG----------------------------------RIVLWDFLTRGIA  176 (622)
Q Consensus       137 ~~~~------~~~v~~~~~s~d~~~l~s~~~dg----------------------------------~i~vw~~~~~~~~  176 (622)
                      ....      .....+++|||||++||+++.|.                                  .|++||+.+++..
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence            1000      01114899999999999987652                                  7889999887643


Q ss_pred             cccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEE----cCCCceEEEe----ccCCcCee----
Q psy2110         177 KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWD----FLTRGIAKII----SAHMHPVC----  240 (622)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~----  240 (622)
                      ..+........   ......+..++|+||++++++....    ..|.+||    +.++++...+    ..|...+.    
T Consensus       238 ~~~~~~~~~~~---~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          238 GPQEVPVPAMI---ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             CCEECCCCHHH---HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSC
T ss_pred             ceeEccCCccC---CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccC
Confidence            10110000000   0011357899999998877764432    2488899    7777765555    46777776    


Q ss_pred             -EEEEcCCCCEEEE--EeCCC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeC----CCcEEEEEecC--
Q psy2110         241 -SISWSRNGYKIIS--ASTDN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPM----RHAAVLVDTDG--  309 (622)
Q Consensus       241 -~~~~s~~~~~l~s--~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~--  309 (622)
                       .+.|+|||+.|+.  ...++  .|.+||+.+++..........+..+.++ +++.+++++..    .+...+|.+..  
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence             8999999996654  43455  5778888877744333355567788878 88877777765    57788888764  


Q ss_pred             Cc-eeeccc----CCCCceEEEEEeeCCCEEEEE-ecC--CeEEEEeCCCccEEEEEe
Q psy2110         310 DH-QIVPID----EDSDLSIVASFDRRGQHVVTG-NSK--GKVLVLSCPALELKASFK  359 (622)
Q Consensus       310 ~~-~~~~~~----~~~~~~~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~  359 (622)
                      +. ....+.    .+...+..+.|++++++++.. +..  ..+.+||+.+++.+..+.
T Consensus       394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            21 122222    245567789999999877753 322  478899998888665554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.9e-20  Score=185.76  Aligned_cols=273  Identities=9%  Similarity=0.096  Sum_probs=186.1

Q ss_pred             CCCCEEEEecCC---CCeEEEEEc--CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---
Q psy2110          91 GDGEYVCAGSAR---QHALYIWEK--SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---  162 (622)
Q Consensus        91 p~~~~l~~~~~~---~~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---  162 (622)
                      +...++++|++.   ++.|.+|.+  .+++.......+....                 ..++|+|||++|++++.+   
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p-----------------~~l~~spdg~~l~~~~~~~~~   73 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANP-----------------SYLIPSADGKFVYSVNEFSKD   73 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCC-----------------CSEEECTTSSEEEEEECCSST
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCC-----------------ceEEECCCCCEEEEEEccCCC
Confidence            344556666442   367999876  4565443322233333                 478999999999999876   


Q ss_pred             -CcEEEEecCC--cccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEEEe------
Q psy2110         163 -GRIVLWDFLT--RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKII------  232 (622)
Q Consensus       163 -g~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~------  232 (622)
                       +.|.+|++..  +............         .....+++  ++++|++++ .++.|.+|++.....+..+      
T Consensus        74 ~~~v~~~~~~~~~g~~~~~~~~~~~~---------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  142 (361)
T 3scy_A           74 QAAVSAFAFDKEKGTLHLLNTQKTMG---------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF  142 (361)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSS---------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC
T ss_pred             CCcEEEEEEeCCCCcEEEeeEeccCC---------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc
Confidence             7999998876  3322111111110         13456677  788777766 5789999999754332211      


Q ss_pred             cc--------CCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCc-------E-------EEEEeCCCCeEEEEEeCCC
Q psy2110         233 SA--------HMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGE-------C-------EQKYRFPSPILKVQFHPRN  289 (622)
Q Consensus       233 ~~--------~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~-------~-------~~~~~~~~~v~~~~~~~~~  289 (622)
                      .+        +...+.+++|+|+|++|++++. ++.|++|++....       .       .........+..++|+|++
T Consensus       143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg  222 (361)
T 3scy_A          143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG  222 (361)
T ss_dssp             CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC
Confidence            11        1234578999999997776654 7899999887543       1       1222345678899999999


Q ss_pred             CeEEEEeeCCCcEEEEEecCCce--ee---cccCCCCceEEEEEeeCCCEEEEEecC--CeEEEEeCC--Ccc--EEEEE
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDHQ--IV---PIDEDSDLSIVASFDRRGQHVVTGNSK--GKVLVLSCP--ALE--LKASF  358 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~  358 (622)
                      +.+++++..++.+.+|++.++..  +.   ....+......++|+|+|++|+++..+  +.|.+|++.  +++  .+..+
T Consensus       223 ~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          223 KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence            98777777899999999986532  22   223334556789999999999776654  899999985  444  44445


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q psy2110         359 KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQ  392 (622)
Q Consensus       359 ~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~  392 (622)
                      .. ...+.+++|+|+|++|++++ .++.|.+|.++
T Consensus       303 ~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          303 LT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             cC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            44 45678999999999998887 57889998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=3.8e-21  Score=192.86  Aligned_cols=309  Identities=14%  Similarity=0.087  Sum_probs=207.2

Q ss_pred             EEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-CC--cEEEEecCCcccccccccccC
Q psy2110         108 IWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-DG--RIVLWDFLTRGIAKIISAHMH  184 (622)
Q Consensus       108 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~  184 (622)
                      .++..++..+..+..|.....            ...+...+|+|||++|+.++. ++  .|.+||+.+++.......+..
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~------------~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~   81 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCH------------RNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD   81 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEE------------CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB
T ss_pred             EecCCCCcceEEecCCccccc------------chhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC
Confidence            456778888888887775442            000112789999999998887 66  488889888876655443321


Q ss_pred             CCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE--EcCCCCEEEEEe-------
Q psy2110         185 PEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS--WSRNGYKIISAS-------  255 (622)
Q Consensus       185 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~-------  255 (622)
                                 .+..++|+|||+.|++++.++.|++||+.+++....+..+...+....  +++++++++...       
T Consensus        82 -----------~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~  150 (388)
T 3pe7_A           82 -----------NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWV  150 (388)
T ss_dssp             -----------CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred             -----------CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccc
Confidence                       122458999999999999999999999999987776666665554444  489999887432       


Q ss_pred             ---------------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC-CCCeEEEEeeC-----CCcEEEEEecCCceee
Q psy2110         256 ---------------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-RNDHMFLVCPM-----RHAAVLVDTDGDHQIV  314 (622)
Q Consensus       256 ---------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-----~~~i~~~d~~~~~~~~  314 (622)
                                     .+..|++||+.+++......+...+..+.|+| +++.++++...     ...+.+++..+.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~  230 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK  230 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE
T ss_pred             cccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE
Confidence                           34679999999998877777778899999999 99877666543     3367888876554333


Q ss_pred             cccCCC-CceEEEEEeeCCCEEEEEec-CC----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         315 PIDEDS-DLSIVASFDRRGQHVVTGNS-KG----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       315 ~~~~~~-~~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      ...... ..+...+|+|+|+.|+..+. ++    .|++||+.+++........ . ...                   ..
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~~-------------------~~  289 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-A-CSH-------------------LM  289 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-C-EEE-------------------EE
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-C-cee-------------------ee
Confidence            322222 34677899999997765433 22    3888888877642211100 0 000                   01


Q ss_pred             EecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee--------CCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         389 YNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS--------ARQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--------~~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                      ++..                           ..+|+|||++|+...        ..+..|++||+.+++. ..+..+...
T Consensus       290 ~~~~---------------------------~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  341 (388)
T 3pe7_A          290 SNYD---------------------------GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTS  341 (388)
T ss_dssp             ECTT---------------------------SSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCC
T ss_pred             ecCC---------------------------CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCc
Confidence            1111                           015788888777542        2256899999998875 445544430


Q ss_pred             ----------ceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110         461 ----------LLLDVVWHPVRPIIASIS--SGVVSLWAQN  488 (622)
Q Consensus       461 ----------~v~~v~~sp~~~~l~s~~--dg~v~iw~~~  488 (622)
                                .+.+++|+|+|+.|+.++  +|...||.++
T Consensus       342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                      278899999999888776  6777777653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.9e-21  Score=191.98  Aligned_cols=283  Identities=10%  Similarity=0.031  Sum_probs=198.2

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEE-EeCCCeEEEEEcC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGRIVLWDFL  224 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~~  224 (622)
                      .+++++++.++++++.++.|++||+.+++....+..+..          ..+..++|+|+|+++++ +..++.|.+||+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK----------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC----------CSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC----------CCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence            567889999999999999999999999877766654320          02467899999986654 4568999999999


Q ss_pred             CCceEEEeccCC------cCeeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCc---EEEEEeCCCCeEEE
Q psy2110         225 TRGIAKIISAHM------HPVCSISWSRNGYKIISASTD------------NNVCIWDVLTGE---CEQKYRFPSPILKV  283 (622)
Q Consensus       225 ~~~~~~~~~~~~------~~v~~~~~s~~~~~l~s~~~d------------~~i~iwd~~~~~---~~~~~~~~~~v~~~  283 (622)
                      +++....+..+.      ..+.+++|+|+|++|++++.+            +.|.+||+.+++   .+..+.++..+.++
T Consensus        74 t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  153 (349)
T 1jmx_B           74 TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM  153 (349)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred             CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce
Confidence            998877766332      337899999999999998865            899999998844   34455566678899


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC------------------------ceEEEEEeeCCCEEEEEe
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD------------------------LSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~l~~~~  339 (622)
                      +|+|+++ +++.   ++.+.+||..+.+....+.....                        ....+++++++.......
T Consensus       154 ~~s~dg~-l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          154 RAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             EECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             eECCCCc-EEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            9999998 5553   33499999988766554433210                        223345554432111100


Q ss_pred             -cCCeEEEEeCCCccE-EEEEecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce
Q psy2110         340 -SKGKVLVLSCPALEL-KASFKASTTAIKSIEFAR-RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT  416 (622)
Q Consensus       340 -~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (622)
                       ....+..++..+++. ...+..+...+.+++|+| ++++++++  ++.|++||+..         .+.+..+..   ..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~---------~~~~~~~~~---~~  295 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ---------RKLIKAANL---DH  295 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT---------TEEEEEEEC---SS
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc---------CeEEEEEcC---CC
Confidence             011122355555442 122334566788999999 99998888  88999999973         233333321   12


Q ss_pred             eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      ....++|+|+|++|++++. ++.|++||+.+++.+..+..+
T Consensus       296 ~~~~~~~s~dg~~l~~~~~-~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             CCCEEEECSSSSCEEEESB-SSEEEEEETTTTEEEEEEECS
T ss_pred             CccceEECCCCCEEEEecC-CCeEEEEeccccceeeeeecC
Confidence            3457899999999988765 799999999999998888765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=6.7e-21  Score=207.16  Aligned_cols=333  Identities=11%  Similarity=0.078  Sum_probs=220.5

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC--
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND--  162 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d--  162 (622)
                      .+++|+|||++|+++  + +.|++||+.+++....+.+|.....            ......++|||||++|+.++.+  
T Consensus        20 ~~~~w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Spdg~~l~~~~~~~~   84 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEF------------GHSINDYSISPDGQFILLEYNYVK   84 (740)
T ss_dssp             CCEEECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTC------------CSCCCEEEECTTSSEEEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhh------------cccccceEECCCCCEEEEEECCee
Confidence            468999999999886  4 8999999999999888888875431            0001247899999999998876  


Q ss_pred             -------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cc
Q psy2110         163 -------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SA  234 (622)
Q Consensus       163 -------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~  234 (622)
                             +.+.+||+.+++... +..+.           ..+..++|||||+.||.+. ++.|++|++.+++..+.. .+
T Consensus        85 ~~r~~~~~~~~~~d~~~~~~~~-l~~~~-----------~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g  151 (740)
T 4a5s_A           85 QWRHSYTASYDIYDLNKRQLIT-EERIP-----------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG  151 (740)
T ss_dssp             CSSSCEEEEEEEEETTTTEECC-SSCCC-----------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC
T ss_pred             eEEEccceEEEEEECCCCcEEE-cccCC-----------CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC
Confidence                   566799999987543 32221           2478999999999999885 689999999887754422 23


Q ss_pred             CCcCe-----------------eEEEEcCCCCEEEEEeCCC------------------------------------cEE
Q psy2110         235 HMHPV-----------------CSISWSRNGYKIISASTDN------------------------------------NVC  261 (622)
Q Consensus       235 ~~~~v-----------------~~~~~s~~~~~l~s~~~d~------------------------------------~i~  261 (622)
                      +...+                 ..+.|||||++|+.++.|.                                    .|+
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence            32222                 3589999999999875321                                    488


Q ss_pred             EEECCC---C---cEEEEEe------CCCCeEEEEEeCCCCeEEEEeeC---CCcEEEEEecCCc----eee--cc--cC
Q psy2110         262 IWDVLT---G---ECEQKYR------FPSPILKVQFHPRNDHMFLVCPM---RHAAVLVDTDGDH----QIV--PI--DE  318 (622)
Q Consensus       262 iwd~~~---~---~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~----~~~--~~--~~  318 (622)
                      +||+.+   +   +......      +...+..++|+|+++.+++....   +..|++||+.++.    +..  .+  ..
T Consensus       232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence            899988   7   4433322      44568899999999855444332   2368999998875    221  11  23


Q ss_pred             CCCceE-----EEEEeeCCCEEE-EEec-C--CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----C
Q psy2110         319 DSDLSI-----VASFDRRGQHVV-TGNS-K--GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD-----R  384 (622)
Q Consensus       319 ~~~~~~-----~~~~~~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----~  384 (622)
                      +...+.     ...|+|||+.++ ..+. +  ..|++|++.+++... +......+..+.. ++++.|+..+..     +
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~  389 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPG  389 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTT
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCc
Confidence            443332     678999999877 5543 3  468889988766554 4444455665542 446666665443     3


Q ss_pred             cEEEE--ecccccccCCCCCCCcceeeecc--ccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEec
Q psy2110         385 LIRVY--NHQEVLNAGKDGDPEPIQKLQDL--VNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       385 ~i~i~--d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~~  456 (622)
                      ...||  ++...         .....+...  ........+.|||+|++++.....  -..+++++..+++.+..+..
T Consensus       390 ~~~ly~v~~~g~---------~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~~  458 (740)
T 4a5s_A          390 GRNLYKIQLIDY---------TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (740)
T ss_dssp             CBEEEEEETTEE---------EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             eeEEEEEECCCC---------CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEecc
Confidence            34444  44321         111112111  012345678999999988766542  24688999888876666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=1.8e-21  Score=195.20  Aligned_cols=276  Identities=11%  Similarity=0.042  Sum_probs=196.5

Q ss_pred             EEEcCCCCEEEEecCCCC--eEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          87 CCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      .+|||||++|++++..++  .|.+||+.+++......++...+                 ..++|+|||+.|+.++.++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~-----------------~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNT-----------------FGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCS-----------------SSCEECTTSSEEEEEETTTE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCc-----------------cceEEcCCCCEEEEEeCCCe
Confidence            689999999999887446  58889999998877776666554                 26789999999999999999


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceE--EEEECCCCCEEEEEe----------------------CCCeEEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAV--TCAFNKRGTLLAVGC----------------------NDGRIVL  220 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~~g~~l~~~~----------------------~dg~i~i  220 (622)
                      |++||+.+++.......+..           .+.  ...+++++++++...                      .+..|++
T Consensus       104 l~~~d~~~g~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQVPAE-----------WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             EEEEETTTCCEEEEEECCTT-----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             EEEEECCCCcceeeeechhh-----------cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            99999999876554443321           122  234589999887432                      3467999


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcC-CCCEEEEEeCC------CcEEEEECCCCcEEEEEeCC--CCeEEEEEeCCCCe
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSR-NGYKIISASTD------NNVCIWDVLTGECEQKYRFP--SPILKVQFHPRNDH  291 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~  291 (622)
                      ||+.+++.. .+..+...+..++|+| ||++|+.+..+      ..|.++|+.+++........  ..+..+.|+|+|+.
T Consensus       173 ~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          173 VDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             EECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence            999988654 4445667789999999 99999887763      37888898776655444443  24778899999998


Q ss_pred             EEEEeeCCC----cEEEEEecCCcee--ecccCCCCc---eEEEEEeeCCCEEEEE---------ecCCeEEEEeCCCcc
Q psy2110         292 MFLVCPMRH----AAVLVDTDGDHQI--VPIDEDSDL---SIVASFDRRGQHVVTG---------NSKGKVLVLSCPALE  353 (622)
Q Consensus       292 ~~~~~~~~~----~i~~~d~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~  353 (622)
                      +++++..++    .+++||+.++...  ..+..+...   .....|+|+|+.|+..         ..+..|++||+.+++
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            866655433    3999999876532  222220000   1113689999988754         456689999998876


Q ss_pred             EEEEEecCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEEecc
Q psy2110         354 LKASFKASTT-----------AIKSIEFARRGNCLLVNTG-DRLIRVYNHQ  392 (622)
Q Consensus       354 ~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~  392 (622)
                      . ..+..+..           .+.+++|+|||++|++.+. ++...||.++
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            5 44555554           5788999999999888764 6666666554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=1.2e-20  Score=205.12  Aligned_cols=321  Identities=10%  Similarity=0.037  Sum_probs=214.2

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND---------  215 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------  215 (622)
                      .+++|+|||++|+++  |++|++|++.+++....+..+......      .....++|||||++|++++.+         
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFG------HSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCC------SCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhc------ccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            488999999999886  899999999999877666655432111      112357999999999998865         


Q ss_pred             CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCe-------------
Q psy2110         216 GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPI-------------  280 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v-------------  280 (622)
                      +.+.+||+.+++.. .+..|...+..++|||||+.|+.+. ++.|++|++.+++..+.....  ..+             
T Consensus        92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            66779999988754 4677788899999999999999985 689999999988865543211  112             


Q ss_pred             ----EEEEEeCCCCeEEEEeeCCC-----------------------------------cEEEEEecC---Cc--eeecc
Q psy2110         281 ----LKVQFHPRNDHMFLVCPMRH-----------------------------------AAVLVDTDG---DH--QIVPI  316 (622)
Q Consensus       281 ----~~~~~~~~~~~~~~~~~~~~-----------------------------------~i~~~d~~~---~~--~~~~~  316 (622)
                          ..+.|||||+.+++....+.                                   .+++||+.+   +.  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                35899999998777643322                                   477788877   52  22222


Q ss_pred             c------CCCCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCcc----EE--EEE--ecCCCCEE-----EEEEcCC
Q psy2110         317 D------EDSDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALE----LK--ASF--KASTTAIK-----SIEFARR  373 (622)
Q Consensus       317 ~------~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~i~-----~~~~s~~  373 (622)
                      .      .+...+..++|+|||+.++....    +..|.+||+.+++    +.  ..+  ..+...|.     .++|+||
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            2      26677889999999997665433    2379999998876    22  112  34555444     7889999


Q ss_pred             CCEEE-EEeC-CC--cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC------CCeEEEE
Q psy2110         374 GNCLL-VNTG-DR--LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR------QHALYIW  443 (622)
Q Consensus       374 ~~~l~-~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------d~~i~iw  443 (622)
                      |+.|+ ..+. +|  .|++|++..          .....+...  ...+..+ +++|++.|+..+..      ...|+..
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~----------~~~~~lT~g--~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDK----------KDCTFITKG--TWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTC----------SSCEESCCS--SSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             CCEEEEEEEcCCCceEEEEEECCC----------CceEecccC--CEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEE
Confidence            99887 6654 44  577888762          111222211  1112222 22457777665542      2356666


Q ss_pred             ECCCCeeEEEEecC---CCCceeEEEECCCCCEEEEEe-C---CcEEEeecC
Q psy2110         444 EKSVGNLVKILHGT---KGELLLDVVWHPVRPIIASIS-S---GVVSLWAQN  488 (622)
Q Consensus       444 d~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~-d---g~v~iw~~~  488 (622)
                      ++..+.....+...   .......+.|+|++++++... .   ..+.+++..
T Consensus       397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~  448 (740)
T 4a5s_A          397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (740)
T ss_dssp             ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence            77655544345422   112388999999999776554 2   356666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.8e-20  Score=189.35  Aligned_cols=199  Identities=14%  Similarity=0.132  Sum_probs=143.8

Q ss_pred             cccceeEEEEcCCCCEEE----EecCCCCeEEEEEcCCC--------c---eEEEEeccCcceeEEEEeecCccccccce
Q psy2110          80 NKTMWKKCCFSGDGEYVC----AGSARQHALYIWEKSVG--------N---LVKILHGTKGELLLDVVEFDGALDCISLA  144 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~----~~~~~~~~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~v  144 (622)
                      ....+.+++|+|+|++|+    +++. |+.|+|||+.++        +   .+..+.+|...|                 
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V-----------------  152 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEY-GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV-----------------  152 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTT-EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE-----------------
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCC-CceEEEEEccccccCCcCCcceeeeeeccCCCCCce-----------------
Confidence            345678999999999999    5665 599999998765        2   145566787777                 


Q ss_pred             eEEEEcCC-CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKR-GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      ++++|+|+ +.+|++++.||+|++||+.++........|.           ..|.+++|+|+|++|++|+.||.|++||+
T Consensus       153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~-----------~~v~~v~wspdg~~lasgs~dg~v~iwd~  221 (434)
T 2oit_A          153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST-----------VAVTSVCWSPKGKQLAVGKQNGTVVQYLP  221 (434)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG-----------GCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC-----------CceeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence            59999998 7899999999999999999875443333322           35899999999999999999999999999


Q ss_pred             CCCceEEEeccC-------CcCeeEEEEcCCCCEEEEE-eCCC------cEEEEECCCCc-----EEEEEe-C-------
Q psy2110         224 LTRGIAKIISAH-------MHPVCSISWSRNGYKIISA-STDN------NVCIWDVLTGE-----CEQKYR-F-------  276 (622)
Q Consensus       224 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~-~~d~------~i~iwd~~~~~-----~~~~~~-~-------  276 (622)
                      + ++....+..|       ...|.+++|++++.++++. ..+|      .+++|++...+     ....+. .       
T Consensus       222 ~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  300 (434)
T 2oit_A          222 T-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE  300 (434)
T ss_dssp             T-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSS
T ss_pred             C-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCC
Confidence            7 5555555433       3389999999988776543 3343      38999998652     112211 1       


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ..+...+.+.++.+.++++.+....+.++...
T Consensus       301 r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          301 RQHHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             SCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence            12233344557777667776666666666653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=1.3e-19  Score=179.72  Aligned_cols=275  Identities=12%  Similarity=0.097  Sum_probs=187.2

Q ss_pred             EEEEEeCC--CeEEEEEcC--CCceEE--Eec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEEeC--C
Q psy2110         208 LLAVGCND--GRIVLWDFL--TRGIAK--IIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-TGECEQKYRF--P  277 (622)
Q Consensus       208 ~l~~~~~d--g~i~iwd~~--~~~~~~--~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~--~  277 (622)
                      ++++|+..  +.|.+|+++  +++...  ... .+...+..++|+|+|++|++++.+ .|.+|++. +++......+  .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            35556543  568887763  454322  111 233468899999999999999887 99999997 7876554432  2


Q ss_pred             CCeEEEEEeCCCCeE-EEEee-------------CCCcEEEEEecC-Cceeeccc----CCCCceEEEEEeeCCCEEEEE
Q psy2110         278 SPILKVQFHPRNDHM-FLVCP-------------MRHAAVLVDTDG-DHQIVPID----EDSDLSIVASFDRRGQHVVTG  338 (622)
Q Consensus       278 ~~v~~~~~~~~~~~~-~~~~~-------------~~~~i~~~d~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~  338 (622)
                      +.+..++|+|+++.+ ++++.             .++.+.+|++.. +.....+.    .+...+..++|+|+|++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            345668999999863 34443             688999999974 33322222    245678899999999988876


Q ss_pred             ec-CCeEEEEeCC-CccEE--EEEe--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCc-ceeee
Q psy2110         339 NS-KGKVLVLSCP-ALELK--ASFK--ASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEP-IQKLQ  410 (622)
Q Consensus       339 ~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~  410 (622)
                      .. ++.|++|++. +++..  ..+.  .+...+..++|+|+|++|++++. ++.|.+|+++..     .+.... ...+.
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~~~~~~~~~~  237 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCCEEEEEEEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCcEEEccceEE
Confidence            54 6799999998 67653  3343  23567899999999999988775 688999987520     011000 11111


Q ss_pred             ccc----cce-------eeeeEE-EcCCCCeEEEeeCCCC-----eEEEEECC-CCeeEEE---EecCCCCceeEEEECC
Q psy2110         411 DLV----NKT-------MWKKCC-FSGDGEYVCAGSARQH-----ALYIWEKS-VGNLVKI---LHGTKGELLLDVVWHP  469 (622)
Q Consensus       411 ~~~----~~~-------~~~~~~-~spdg~~l~~~~~~d~-----~i~iwd~~-~~~~~~~---~~~~~~~~v~~v~~sp  469 (622)
                      ...    .+.       ....++ |+|||++|+++.....     .|.+|++. +|++...   +..+... +..++|+|
T Consensus       238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-~~~~a~sp  316 (365)
T 1jof_A          238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-GHSNAVSP  316 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-TTCCCEEE
T ss_pred             cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-cccceecC
Confidence            111    111       356789 9999999987764333     89999986 6765442   3333333 77899999


Q ss_pred             ---CCCEEEEEe--CCcEEEeecCC
Q psy2110         470 ---VRPIIASIS--SGVVSLWAQNQ  489 (622)
Q Consensus       470 ---~~~~l~s~~--dg~v~iw~~~~  489 (622)
                         ++++|++++  ++.|++|+++.
T Consensus       317 ~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCcCCCEEEEEEcCCCeEEEEEEch
Confidence               899999887  48999999853

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=2.1e-19  Score=177.07  Aligned_cols=291  Identities=12%  Similarity=0.133  Sum_probs=208.4

Q ss_pred             CCCCEEEEee------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----------
Q psy2110         151 KRGTLLAVGC------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----------  214 (622)
Q Consensus       151 ~d~~~l~s~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------  214 (622)
                      ++++++++..      .|+.|.+||..+++.+..+....            .. .++|+|||++++++..          
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~------------~p-~i~~spdg~~lyv~~~~~~~~~~g~~   79 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF------------NG-HVQVSNDGKKIYTMTTYHERITRGKR   79 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE------------EE-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC------------CC-ceEECCCCCEEEEEEecccccccCCC
Confidence            3566666553      36799999999887766554331            23 7899999999998863          


Q ss_pred             CCeEEEEEcCCCceEEEeccC------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE-EeCCCCeEEEEE
Q psy2110         215 DGRIVLWDFLTRGIAKIISAH------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQK-YRFPSPILKVQF  285 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~  285 (622)
                      ++.|.+||..+++.+..+...      ......++++|||++|+++..  +++|.+||+.+++.+.. +.... ...+.+
T Consensus        80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~  158 (361)
T 2oiz_A           80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIP  158 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEE
T ss_pred             CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEE
Confidence            567999999998888777632      245678999999999998874  57899999999998887 66443 233667


Q ss_pred             eCCCCeEEEEeeCCCcEEEEEecCC-cee------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEE
Q psy2110         286 HPRNDHMFLVCPMRHAAVLVDTDGD-HQI------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKA  356 (622)
Q Consensus       286 ~~~~~~~~~~~~~~~~i~~~d~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~  356 (622)
                      .|++...+++.+.++.+.+++.... ...      ..+......+ .+.+++++..++..+.++.+.++|+....  ...
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence            8887667788888999999988653 222      1122222222 23446778788878888999999987554  222


Q ss_pred             EEecC----------CCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110         357 SFKAS----------TTAIKSIEFARRGNCLLVNTG-----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK  415 (622)
Q Consensus       357 ~~~~~----------~~~i~~~~~s~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (622)
                      .+...          ......++|+|+++.++++..           .+.|.+||+.         ..+.+..+....  
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---------t~~~v~~i~~~~--  306 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---------TKQRVARIPGRD--  306 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---------TTEEEEEEECTT--
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---------CCcEEEEEecCC--
Confidence            22210          011123789999888877643           3479999988         334555554332  


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC--eeEEEEecCCCCceeEEEECCCCC
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG--NLVKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                        ...++|+|||++|++++.  +.|.+||..++  +.++.+...... ...++++|+|.
T Consensus       307 --p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~-P~~~~~~p~G~  360 (361)
T 2oiz_A          307 --ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEA-SLQVQFHPVGG  360 (361)
T ss_dssp             --CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSS-EEEEEECCCSC
T ss_pred             --eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCC-cEEEEecCCCC
Confidence              577899999999988773  89999999999  988887555444 88999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.1e-19  Score=183.48  Aligned_cols=294  Identities=12%  Similarity=0.071  Sum_probs=188.1

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE----Ee
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA----VG  159 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~----s~  159 (622)
                      ...+++++++.++++++.+ + +++|+............+...+.  .......+.....|++++|+|++++|+    +|
T Consensus        39 ~n~lavs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CBCEEEETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             ccEEEEecCCCEEEEECCC-E-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            4578999999999998864 4 88987642111000000000000  000000011122357999999999999    78


Q ss_pred             eCCCcEEEEecCCc-----cc------ccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCCeEEEEEcCCCc
Q psy2110         160 CNDGRIVLWDFLTR-----GI------AKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       160 ~~dg~i~vw~~~~~-----~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                      +.|+.|+|||+.++     +.      ...+..|.           ..|.+++|+|+ +++|++++.||.|++||+.++.
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-----------GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-----------GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCC-----------CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence            89999999998765     11      11222222           46899999998 8899999999999999999987


Q ss_pred             eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-C-------CCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-F-------PSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      ......+|...|++++|+|+|++|++|+.||.|++||++ ++....+. +       ...+.+++|++++..+++....+
T Consensus       184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d  262 (434)
T 2oit_A          184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD  262 (434)
T ss_dssp             EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred             ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence            777777889999999999999999999999999999998 66555554 1       12789999999876555555555


Q ss_pred             C------cEEEEEecCCc-----eeeccc-------CCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCc--cE-EEE
Q psy2110         300 H------AAVLVDTDGDH-----QIVPID-------EDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPAL--EL-KAS  357 (622)
Q Consensus       300 ~------~i~~~d~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~-~~~  357 (622)
                      +      .+++|+++...     ....+.       ........+.+-++.+++++++. .+.|.++.....  .. ...
T Consensus       263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~  342 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL  342 (434)
T ss_dssp             CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred             CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence            3      38899997542     111111       12222233444467777766554 344555553221  11 111


Q ss_pred             Ee------------cCCCCEEEEEEc---------------CCCCEEEEEeCCCcEEEEeccc
Q psy2110         358 FK------------ASTTAIKSIEFA---------------RRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       358 ~~------------~~~~~i~~~~~s---------------~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      +.            .......++++.               |-...|.+-+.+|.+..|.+-.
T Consensus       343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            11            112223344442               1235678888999999998763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.87  E-value=5.4e-18  Score=175.23  Aligned_cols=333  Identities=14%  Similarity=0.095  Sum_probs=237.2

Q ss_pred             CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  170 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~  170 (622)
                      |.+.++++.. +++.|.++|..+++.+.++......                  +.+.|+|||+++++++.|+.|.+||+
T Consensus       165 ~~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~~p------------------~~v~~SpDGr~lyv~~~dg~V~viD~  225 (567)
T 1qks_A          165 LENLFSVTLR-DAGQIALIDGSTYEIKTVLDTGYAV------------------HISRLSASGRYLFVIGRDGKVNMIDL  225 (567)
T ss_dssp             GGGEEEEEET-TTTEEEEEETTTCCEEEEEECSSCE------------------EEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             CCceEEEEeC-CCCeEEEEECCCCeEEEEEeCCCCc------------------cceEECCCCCEEEEEcCCCeEEEEEC
Confidence            3333444444 5699999999999999888754432                  48999999999999999999999999


Q ss_pred             C--CcccccccccccCCCcccccccccceEEEEEC----CCCCEEEEEeC-CCeEEEEEcCCCceEEEeccC--------
Q psy2110         171 L--TRGIAKIISAHMHPEFDGALDCISLAVTCAFN----KRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAH--------  235 (622)
Q Consensus       171 ~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~--------  235 (622)
                      .  +++.+..+....            ....++|+    |||++++++.. .+.+.++|..+.+.+..+...        
T Consensus       226 ~~~t~~~v~~i~~G~------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~  293 (567)
T 1qks_A          226 WMKEPTTVAEIKIGS------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE  293 (567)
T ss_dssp             TSSSCCEEEEEECCS------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred             CCCCCcEeEEEecCC------------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence            5  665555544322            34688999    69998887765 589999999999888776522        


Q ss_pred             ---CcCeeEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEE--EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         236 ---MHPVCSISWSRNGYKIIS-ASTDNNVCIWDVLTGECEQ--KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       236 ---~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                         ...+..+..++++..++. ....|.|.++|..+.+...  .+........+.|+|+++++++++..++.|.++|+.+
T Consensus       294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence               125778889988665544 4456899999998765433  3345556778999999999989888899999999998


Q ss_pred             CceeecccC-----CCCceEEEEEeeCCCEE-EEEe-cCCeEEEEeCCC-------ccEEEEEecCCCCEEEEEEcCCCC
Q psy2110         310 DHQIVPIDE-----DSDLSIVASFDRRGQHV-VTGN-SKGKVLVLSCPA-------LELKASFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       310 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~  375 (622)
                      .+.+..+..     |...-.. .++|++..+ +++. .++.|.++|..+       .+.+.++......-..+..+|+++
T Consensus       374 ~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~  452 (567)
T 1qks_A          374 GKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ  452 (567)
T ss_dssp             TEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS
T ss_pred             CcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCC
Confidence            876544433     2211111 257875554 4443 468999999987       678888886544434577899999


Q ss_pred             EEEEEeC-------CCcEEEEecccccccCCCCCCCcceeeec-----c-ccceeeeeEEEcCCCCeEEEeeC----CCC
Q psy2110         376 CLLVNTG-------DRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----L-VNKTMWKKCCFSGDGEYVCAGSA----RQH  438 (622)
Q Consensus       376 ~l~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~spdg~~l~~~~~----~d~  438 (622)
                      +|.+...       ...|.++|+.+....+   ....+..+..     . .....+..+.|+|+|+++..+..    .++
T Consensus       453 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~  529 (567)
T 1qks_A          453 YLYVDATLNPEAEISGSVAVFDIKAMTGDG---SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES  529 (567)
T ss_dssp             EEEEECTTCSSHHHHTCEEEEEGGGCCCSS---SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred             eEEEecCCCCCcccCceEEEEECCcccccc---cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCC
Confidence            9988763       3589999998531100   0111122211     1 12334567899999999887632    368


Q ss_pred             eEEEEECCCCeeEEEEecCC
Q psy2110         439 ALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       439 ~i~iwd~~~~~~~~~~~~~~  458 (622)
                      .|.|+|.++++++..++...
T Consensus       530 ~i~v~D~~t~~~~~~i~~~~  549 (567)
T 1qks_A          530 ALVVVDDKTLELKHVIKDER  549 (567)
T ss_dssp             EEEEEETTTTEEEEEECCTT
T ss_pred             cEEEEECCCceEEEEeCCCc
Confidence            99999999999998887643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.87  E-value=2e-20  Score=188.17  Aligned_cols=308  Identities=13%  Similarity=0.021  Sum_probs=201.9

Q ss_pred             EEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---CcEEEEecCCccccccccccc
Q psy2110         107 YIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIISAHM  183 (622)
Q Consensus       107 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~  183 (622)
                      ..+|..+++.+..+..+.....            ...+..++|+|||++|+.....   ..|.+|++.+++.........
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~------------~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~   80 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICH------------RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG   80 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEE------------CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC
T ss_pred             eeecCCCCcceEEEecCCCCcc------------ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC
Confidence            3457778887777766543310            0112478999999998877543   468888988876543322211


Q ss_pred             CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeE-------------------EEE
Q psy2110         184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCS-------------------ISW  244 (622)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~  244 (622)
                      .           ....+.|+|||++|++++.++.|++|++.+++.......+......                   +.|
T Consensus        81 ~-----------~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           81 D-----------NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             B-----------CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             C-----------ccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccccccc
Confidence            0           1123589999999999999999999999988766555544432222                   346


Q ss_pred             cCCCCEEEEE-----eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC-CCCeEEEEeeCC-----CcEEEEEecCCcee
Q psy2110         245 SRNGYKIISA-----STDNNVCIWDVLTGECEQKYRFPSPILKVQFHP-RNDHMFLVCPMR-----HAAVLVDTDGDHQI  313 (622)
Q Consensus       245 s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~-----~~i~~~d~~~~~~~  313 (622)
                      +|+++.++.+     ..+..|++||+.+++..........+..+.|+| ++..++++....     ..+.++++.+....
T Consensus       150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (396)
T 3c5m_A          150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR  229 (396)
T ss_dssp             CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred             CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence            7777766554     355689999999998877777778899999999 777666655322     36888888665433


Q ss_pred             ecccCC-CCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEEEEecCCCCEEEEEEcC-CCCEEEEEe-----
Q psy2110         314 VPIDED-SDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKASFKASTTAIKSIEFAR-RGNCLLVNT-----  381 (622)
Q Consensus       314 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~-----  381 (622)
                      ...... ...+..++|+|+|++|+.++.+     +.|++||+.+++........  ... +.|+| +|+++++++     
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~  306 (396)
T 3c5m_A          230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPV  306 (396)
T ss_dssp             ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC--
T ss_pred             EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcce
Confidence            322221 2356778999999987776543     45999999888754433222  233 89999 999888765     


Q ss_pred             -----------CCCcEEEEecccccccCCCCCCCcceeeeccccce---------eeeeEEEcCCCCeEEEeeCCCC--e
Q psy2110         382 -----------GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---------MWKKCCFSGDGEYVCAGSARQH--A  439 (622)
Q Consensus       382 -----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~spdg~~l~~~~~~d~--~  439 (622)
                                 .+..|++||+...       .   ...+.......         ....++|+|||++|+..+..++  .
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~-------~---~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~  376 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKAK-------S---AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA  376 (396)
T ss_dssp             --------CCCCCCEEEEEETTTT-------B---CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred             eeccccccccCCCCcEEEEecccC-------c---eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence                       2467999998731       1   12222211100         1234689999999988776444  4


Q ss_pred             EEEEECCCCee
Q psy2110         440 LYIWEKSVGNL  450 (622)
Q Consensus       440 i~iwd~~~~~~  450 (622)
                      |+++++.+++.
T Consensus       377 l~~~~~~~~~~  387 (396)
T 3c5m_A          377 IYIADVPESYK  387 (396)
T ss_dssp             EEEEECCTTCC
T ss_pred             EEEEEEccccc
Confidence            56666666554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.86  E-value=1.9e-19  Score=178.46  Aligned_cols=237  Identities=10%  Similarity=0.068  Sum_probs=170.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecC-CcccccccccccCCCcccccccccceEEEEECCCCCE--EEEEe--------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL--LAVGC--------  213 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~--------  213 (622)
                      ..++|+|+|++|++++.+ .|.+|++. +++..........    +      .+..++|+|+|++  ++++.        
T Consensus        43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~----g------~~~~~~~spdg~~l~~~~~~~~~~~~~~  111 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG----G------HPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC----S------SGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC----C------CCccEEECCCCCEEEEEEecCCcceecc
Confidence            489999999999999887 99999997 6654432221100    0      1234689999994  44543        


Q ss_pred             -----CCCeEEEEEcC-CCceEEEec----cCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECC-CCcEE--EEEe---C
Q psy2110         214 -----NDGRIVLWDFL-TRGIAKIIS----AHMHPVCSISWSRNGYKIISAST-DNNVCIWDVL-TGECE--QKYR---F  276 (622)
Q Consensus       214 -----~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~-~~~~~--~~~~---~  276 (622)
                           .++.+.+|++. +++....+.    .+...+.+++|+|||++|+++.. ++.|++|++. +++..  ..+.   +
T Consensus       112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence                 68999999997 465544443    24567899999999998887764 6799999998 77653  2333   2


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--Cce------eecccCC----CC------ceEEEE-EeeCCCEEEE
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--DHQ------IVPIDED----SD------LSIVAS-FDRRGQHVVT  337 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~------~~~~~~~----~~------~~~~~~-~~~~~~~l~~  337 (622)
                      ...+..++|+|+++.++++...++.+.+|++..  +..      +..+...    ..      .+..++ |+|+|++|++
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            567899999999998777777788999998753  332      1122211    21      477899 9999999887


Q ss_pred             EecCC------eEEEEeCC-CccEEE---EEecCCCCEEEEEEcC---CCCEEEEEeCC-CcEEEEecc
Q psy2110         338 GNSKG------KVLVLSCP-ALELKA---SFKASTTAIKSIEFAR---RGNCLLVNTGD-RLIRVYNHQ  392 (622)
Q Consensus       338 ~~~dg------~i~i~d~~-~~~~~~---~~~~~~~~i~~~~~s~---~~~~l~~~~~d-~~i~i~d~~  392 (622)
                      ++.+.      .|.+|++. +++...   ....+......++|+|   +|++|++++.+ +.|.+|+++
T Consensus       272 ~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            76432      89999986 666543   2333455567899999   89999998864 899999987

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=3.1e-19  Score=175.92  Aligned_cols=262  Identities=15%  Similarity=0.184  Sum_probs=191.2

Q ss_pred             EEEEcCCCCEEEEecC---------CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          86 KCCFSGDGEYVCAGSA---------RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~---------~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      .++|||||++|+++..         .++.|.+||..+++.+..+.......           ........++|+|||++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~-----------~~g~~p~~i~~spdg~~l  122 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV-----------QGLNYDGLFRQTTDGKFI  122 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC-----------CBCCCGGGEEECTTSSEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc-----------ccCCCcceEEECCCCCEE
Confidence            6899999999998752         23689999999999988876442110           000112478999999999


Q ss_pred             EEeeC--CCcEEEEecCCcccccc-cccccCCCcccccccccceEEEEECCCC-CEEEEEeCCCeEEEEEcCC-CceEE-
Q psy2110         157 AVGCN--DGRIVLWDFLTRGIAKI-ISAHMHPEFDGALDCISLAVTCAFNKRG-TLLAVGCNDGRIVLWDFLT-RGIAK-  230 (622)
Q Consensus       157 ~s~~~--dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iwd~~~-~~~~~-  230 (622)
                      +++..  +++|.+||+.+++.+.. +....             ...+.+.|++ ..+++.+.||.+.+|++.. ++... 
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-------------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYVEDVTAAAG-------------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEEEEEGGGTT-------------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             EEECCCCCCeEEEEECCCCcEEEEEecCCC-------------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence            98874  57899999999877655 43221             1234567765 5777888899999998865 44431 


Q ss_pred             -----EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeC-----------CCCeEEEEEeCCCCeE
Q psy2110         231 -----IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKYRF-----------PSPILKVQFHPRNDHM  292 (622)
Q Consensus       231 -----~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~~~~~  292 (622)
                           .+..+..++ .+.+++++..++..+.++.|.++|+.....  ...+..           +.....++++|+++.+
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l  268 (361)
T 2oiz_A          190 SRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM  268 (361)
T ss_dssp             EECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred             ccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence                 122222222 233467787888888899999999976542  222221           1122237899999888


Q ss_pred             EEEeeC----------CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc--cEEEEEec
Q psy2110         293 FLVCPM----------RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL--ELKASFKA  360 (622)
Q Consensus       293 ~~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~  360 (622)
                      +++...          ...+.+||+.+.+.+..+..+.  ...++|+|+|++|++++. +.|.+||..++  +.+.++..
T Consensus       269 yv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~  345 (361)
T 2oiz_A          269 YVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG  345 (361)
T ss_dssp             EEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred             EEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence            777651          3479999999999888888776  889999999999999887 99999999999  99988877


Q ss_pred             CCCCEEEEEEcCCCC
Q psy2110         361 STTAIKSIEFARRGN  375 (622)
Q Consensus       361 ~~~~i~~~~~s~~~~  375 (622)
                      .......++++|+|+
T Consensus       346 ~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          346 AAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEecCCCC
Confidence            777788999999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=1.8e-19  Score=181.06  Aligned_cols=275  Identities=12%  Similarity=0.058  Sum_probs=185.8

Q ss_pred             eEEEEECCCCCEEEEEeCC---CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         197 AVTCAFNKRGTLLAVGCND---GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                      +..++|+|||++|+.....   ..|.+|++.+++.......+......+.|+|||++|+.++.++.|++||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            3456899999998877543   4688889888775544333333333488999999999999999999999999887776


Q ss_pred             EeCCCC-eEE-------------------EEEeCCCCeEEEEe----eCCCcEEEEEecCCceeecccCCCCceEEEEEe
Q psy2110         274 YRFPSP-ILK-------------------VQFHPRNDHMFLVC----PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD  329 (622)
Q Consensus       274 ~~~~~~-v~~-------------------~~~~~~~~~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  329 (622)
                      ...+.. ...                   +.|+|+++.+++..    ..+..+++||+.++...... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            663332 111                   24567776544433    45667899999876544333 345667889999


Q ss_pred             e-CCCEEEEEecC------CeEEEEeCCCccEEEEEecC-CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccc
Q psy2110         330 R-RGQHVVTGNSK------GKVLVLSCPALELKASFKAS-TTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLN  396 (622)
Q Consensus       330 ~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~  396 (622)
                      | +++.|+..+.+      ..|.+|++..++........ ...+..++|+|+|++|++++.+     +.|++||+..   
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~---  273 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET---  273 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT---
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC---
Confidence            9 78877665543      36889998766543332211 2357889999999988877543     4499999873   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcC-CCCeEEEeeC---------------CCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSG-DGEYVCAGSA---------------RQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                          +....+..+.   .   .. +.|+| ||+++++++.               .+..|++||+.+++.. .+..+...
T Consensus       274 ----g~~~~l~~~~---~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~  341 (396)
T 3c5m_A          274 ----LENEEVMVMP---P---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTS  341 (396)
T ss_dssp             ----CCEEEEEECC---S---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCC
T ss_pred             ----CCeEEeeeCC---C---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCc
Confidence                1111111111   1   12 78999 9998887542               2468999999888753 44444431


Q ss_pred             ----------ceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110         461 ----------LLLDVVWHPVRPIIASIS--SGVVSLWAQ  487 (622)
Q Consensus       461 ----------~v~~v~~sp~~~~l~s~~--dg~v~iw~~  487 (622)
                                .+..++|+|+++.|++++  ++...||.+
T Consensus       342 ~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          342 WDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                      156789999999888776  566666665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.82  E-value=7.6e-17  Score=166.68  Aligned_cols=321  Identities=12%  Similarity=0.048  Sum_probs=218.4

Q ss_pred             ceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcC--CCceEE
Q psy2110          41 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS--VGNLVK  118 (622)
Q Consensus        41 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~--~~~~~~  118 (622)
                      .++++...++.|.++|..+.            +.+..+.....+..+.|||||+++++++. ++.|.+||+.  +++.+.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~  234 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY------------EIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVA  234 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC------------CEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC------------eEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeE
Confidence            34555556667777776431            11222222333457899999999999885 4899999995  888888


Q ss_pred             EEeccCcceeEEEEeecCccccccceeEEEEc----CCCCEEEEeeC-CCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         119 ILHGTKGELLLDVVEFDGALDCISLAVTCAFN----KRGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       119 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      .+.....+                  ..++|+    |||+++++++. +++|.++|..+.+.+..+..............
T Consensus       235 ~i~~G~~P------------------~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p  296 (567)
T 1qks_A          235 EIKIGSEA------------------RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP  296 (567)
T ss_dssp             EEECCSEE------------------EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred             EEecCCCC------------------ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence            77765444                  489999    69998887765 58999999988887776553211000000001


Q ss_pred             ccceEEEEECCCCCEEEE-EeCCCeEEEEEcCCCceE--EEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q psy2110         194 ISLAVTCAFNKRGTLLAV-GCNDGRIVLWDFLTRGIA--KIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGE  269 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~  269 (622)
                      ...+..+.+++++..+++ ....|.|.++|..+.+..  ..+ ........+.|+|+|++|+++. .++.|.++|+.+++
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            124677888888765544 455699999998765432  222 2334567889999999987776 46889999999999


Q ss_pred             EEEEEeC-C---CCeEEEE-EeCCCCeEEEEee-CCCcEEEEEecC-------CceeecccCCCCceEEEEEeeCCCEEE
Q psy2110         270 CEQKYRF-P---SPILKVQ-FHPRNDHMFLVCP-MRHAAVLVDTDG-------DHQIVPIDEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       270 ~~~~~~~-~---~~v~~~~-~~~~~~~~~~~~~-~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (622)
                      ....+.. .   .+-..+. ++|++..+++++. .++.|.++|...       .+.+..+.........+..+|++++++
T Consensus       376 l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~  455 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  455 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEE
Confidence            8877664 2   1112233 5887666666654 468999999987       345555554444434577899999999


Q ss_pred             EEec-------CCeEEEEeCCCc-----c-EEEEEe--------cCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEe
Q psy2110         337 TGNS-------KGKVLVLSCPAL-----E-LKASFK--------ASTTAIKSIEFARRGNCLLVNT-----GDRLIRVYN  390 (622)
Q Consensus       337 ~~~~-------dg~i~i~d~~~~-----~-~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~i~d  390 (622)
                      +...       .++|.++|+.+.     . ....+.        .....+..+.|+|+|+++.++.     .++.|.|+|
T Consensus       456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            8763       358999998876     2 223332        1245788999999999888763     268899999


Q ss_pred             ccc
Q psy2110         391 HQE  393 (622)
Q Consensus       391 ~~~  393 (622)
                      ..+
T Consensus       536 ~~t  538 (567)
T 1qks_A          536 DKT  538 (567)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=2.3e-17  Score=161.37  Aligned_cols=266  Identities=13%  Similarity=0.084  Sum_probs=194.6

Q ss_pred             eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC
Q psy2110          84 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  163 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg  163 (622)
                      +.+++|++++..++..+.+ +.++.|   .++....+..+....                 .+++|+++|++++++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~~~~g~l~~~~~~~~   66 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISE-SELQTI---TAEPWLEISKKGLQL-----------------EGLNFDRQGQLFLLDVFEG   66 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCG-GGSCEE---ECEEEEEEESSCCCE-----------------EEEEECTTSCEEEEETTTC
T ss_pred             cceeeecCCccceeEEeec-ccCccc---ccceeEEEeccCccc-----------------cCcEECCCCCEEEEECCCC
Confidence            4568899998887776544 788888   455666666665554                 4899999999888888889


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEEcCCCceEEEec--cCCc
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLTRGIAKIIS--AHMH  237 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~  237 (622)
                      .|.+||..+++.........           ..+.+++++++|+++++...+    +.|.+||..++.....+.  .+..
T Consensus        67 ~i~~~d~~~~~~~~~~~~~~-----------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  135 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVSHK-----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  135 (333)
T ss_dssp             EEEEECTTTCCEEEEEECSS-----------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             EEEEEeCCCCcEEEEeeCCC-----------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence            99999998876544321111           347899999999988777666    689999988776553433  2445


Q ss_pred             CeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC-
Q psy2110         238 PVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD-  310 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-  310 (622)
                      .+.+++++|+|+.+++...      .+.|..+|..+++..........+..++|+|+++.++++...++.+.+|+.... 
T Consensus       136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g  215 (333)
T 2dg1_A          136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG  215 (333)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence            7899999999987776653      356777777666655444444567899999999877777777889999999642 


Q ss_pred             ceee--------cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC------CEEEEEEcCCCCE
Q psy2110         311 HQIV--------PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTT------AIKSIEFARRGNC  376 (622)
Q Consensus       311 ~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~  376 (622)
                      ....        .+.. ...+..++++++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+|+++.
T Consensus       216 ~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~  293 (333)
T 2dg1_A          216 VTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  293 (333)
T ss_dssp             SSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             cCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence            2111        1111 135678999999998888777889999998 5777777765433      6889999999887


Q ss_pred             EEEEeCC
Q psy2110         377 LLVNTGD  383 (622)
Q Consensus       377 l~~~~~d  383 (622)
                      |++++.+
T Consensus       294 L~v~~~~  300 (333)
T 2dg1_A          294 LIICSND  300 (333)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCc
Confidence            7766654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1.8e-18  Score=186.17  Aligned_cols=299  Identities=7%  Similarity=-0.022  Sum_probs=191.7

Q ss_pred             eEEEEcCCCCEEEEe--eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEE--CCCCCE-EEEEeC-CCeE
Q psy2110         145 VTCAFNKRGTLLAVG--CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF--NKRGTL-LAVGCN-DGRI  218 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~-l~~~~~-dg~i  218 (622)
                      ..++|+++.-++++.  +.++...||....+.....+..+..... ........ ....|  ||||+. |+.++. +..|
T Consensus        27 ~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~SPDg~~~la~~~~~~~~l  104 (662)
T 3azo_A           27 ACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVR-NRVFEYSG-FPWAGVPRPAGGPLLVFTHFGDQRL  104 (662)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBC-CCGGGTCC-CCEEEECCSSSSCEEEEEBTTTCCE
T ss_pred             ceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccc-ccccccCC-ccceeeeecCCCeEEEEEECCCCeE
Confidence            589999887666666  5588999998654444444443321100 00000000 12344  499998 776654 4556


Q ss_pred             EEEEcC--CCceEEEecc-----CCcCeeEEEEcCCCCEEEEEeCC----------CcEEEEECCC------CcEEEEE-
Q psy2110         219 VLWDFL--TRGIAKIISA-----HMHPVCSISWSRNGYKIISASTD----------NNVCIWDVLT------GECEQKY-  274 (622)
Q Consensus       219 ~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d----------~~i~iwd~~~------~~~~~~~-  274 (622)
                      +++++.  .......+..     |...+.+++|+|||+.|++++.+          ..|++||+.+      ++..... 
T Consensus       105 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~  184 (662)
T 3azo_A          105 YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD  184 (662)
T ss_dssp             EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC
T ss_pred             EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe
Confidence            666654  2044555665     67788999999999999998876          5899999998      6665555 


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCC-------CcEEEEEec-CC---ceeecccCCCCceEEEEEeeCCCEEEEEecCC-
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMR-------HAAVLVDTD-GD---HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKG-  342 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-  342 (622)
                      .+...+..++|+|||+.++++....       ..|++||+. ++   ........+...+..+.|+|||++++++..++ 
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~  264 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW  264 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence            4556778899999999877666443       479999998 45   33333334467788999999999888888887 


Q ss_pred             -eEEEEeCCCccEEEEEecCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110         343 -KVLVLSCPALELKASFKASTTA--------IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV  413 (622)
Q Consensus       343 -~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  413 (622)
                       .|++||+.+++.......+...        +..++|+|+++++++++. +.++||.++.        ....+..+..+.
T Consensus       265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~--------~~~~~~~l~~~~  335 (662)
T 3azo_A          265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP--------ESGELVDAAGPW  335 (662)
T ss_dssp             CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET--------TTTEEEECCSSC
T ss_pred             eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC--------CCCcEEEecCCC
Confidence             7777887777655443333222        567899999999999988 9999995541        111233333321


Q ss_pred             cceeeeeEEEcCCCCeEEEe-eCCCC--eEEEEECCCCeeEEEEecC
Q psy2110         414 NKTMWKKCCFSGDGEYVCAG-SARQH--ALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       414 ~~~~~~~~~~spdg~~l~~~-~~~d~--~i~iwd~~~~~~~~~~~~~  457 (622)
                        ..+..+ ++++++.++.. +..+.  .|+++|+.+++.......+
T Consensus       336 --~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~  379 (662)
T 3azo_A          336 --TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH  379 (662)
T ss_dssp             --CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred             --CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence              223333 15555544432 22232  5777788788754443333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=8.4e-18  Score=181.02  Aligned_cols=294  Identities=10%  Similarity=-0.024  Sum_probs=190.6

Q ss_pred             cccceeEEEEcCCCCEEEEec-CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEc--CCCCE-
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN--KRGTL-  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s--~d~~~-  155 (622)
                      +...+..++|++++.+++... ..++...||....+.....+..|...+......+.+        ....|+  |||++ 
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~SPDg~~~   93 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSG--------FPWAGVPRPAGGPL   93 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCC--------CCEEEECCSSSSCE
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCC--------ccceeeeecCCCeE
Confidence            344566889998876666661 224789999976566666777666443100000000        034454  99998 


Q ss_pred             EEEeeC-CCcEEEEecC--C-cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----------CeEEEE
Q psy2110         156 LAVGCN-DGRIVLWDFL--T-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----------GRIVLW  221 (622)
Q Consensus       156 l~s~~~-dg~i~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----------g~i~iw  221 (622)
                      |+.++. +..|.+|++.  . +. ...+......      .....+..++|+|||+.|++++.+          ..|++|
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~------~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAV------GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCS------TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccC------CCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            776654 4566666665  2 33 3333321100      001246789999999999988876          589999


Q ss_pred             EcCC------CceEEEec-cCCcCeeEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---cEEEEEe-CCCCeE
Q psy2110         222 DFLT------RGIAKIIS-AHMHPVCSISWSRNGYKIISASTD--------NNVCIWDVL-TG---ECEQKYR-FPSPIL  281 (622)
Q Consensus       222 d~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~v~  281 (622)
                      ++.+      ++. ..+. .+...+..++|||||++|+.++.+        ..|++||+. ++   +...... +...+.
T Consensus       167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            9987      544 4555 666788899999999999988755        379999998 57   4444444 467899


Q ss_pred             EEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCc--------eEEEEEeeCCCEEEEEecCCeEEEE--eC
Q psy2110         282 KVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDL--------SIVASFDRRGQHVVTGNSKGKVLVL--SC  349 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~i~--d~  349 (622)
                      .+.|+|+++ +++++..++  .+++|++.++........+...        +..++|+++++++++++. +.+++|  |+
T Consensus       246 ~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~  323 (662)
T 3azo_A          246 QAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP  323 (662)
T ss_dssp             EEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred             ceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence            999999999 777777777  5556665455433333222221        456888999999999988 888888  65


Q ss_pred             CCccEEEEEecCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecc
Q psy2110         350 PALELKASFKASTTAIKSI-EFARRGNCLLVNTGDRL--IRVYNHQ  392 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~d~~--i~i~d~~  392 (622)
                      .+++ +..+..+...+..+ +++.+.-.+++++.+..  |+++|+.
T Consensus       324 ~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~  368 (662)
T 3azo_A          324 ESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTV  368 (662)
T ss_dssp             TTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred             CCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence            5555 67777777777777 44433333334455544  4445544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=4.3e-17  Score=160.47  Aligned_cols=258  Identities=13%  Similarity=0.085  Sum_probs=177.8

Q ss_pred             eeEEEEcCCCCEEEEecC--------CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          84 WKKCCFSGDGEYVCAGSA--------RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~--------~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      +...++  ||++|+....        .++.|.+|++.+++... +    ..+                 ..++|||||++
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~-----------------~~~~~SpDg~~   72 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENA-----------------TMPRISPDGKK   72 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESC-----------------EEEEECTTSSE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccC-----------------CCeEECCCCCE
Confidence            345677  8998887531        13679999998877543 3    223                 48999999999


Q ss_pred             EEEeeCC---C--cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC---------------
Q psy2110         156 LAVGCND---G--RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND---------------  215 (622)
Q Consensus       156 l~s~~~d---g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---------------  215 (622)
                      |+.++.+   +  .|.+|++.+++........            . +..++|+|||+.|+.++.+               
T Consensus        73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           73 IAFMRANEEKKVSEIWVADLETLSSKKILEAK------------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEETTTTEEEEEEEES------------E-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             EEEEEeccCCCcceEEEEECCCCceEEEEcCC------------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            9987754   3  3777788776544332221            2 6789999999999887642               


Q ss_pred             ------------CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCcEEEEEeC
Q psy2110         216 ------------GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN-------NVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       216 ------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~  276 (622)
                                  ..|++|++.+++.+..+.. . .+..++|+||| .++++..+.       ...||.+.+++.......
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~  216 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK  216 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC
Confidence                        5689999988877455554 3 78899999999 777776542       334444436655444444


Q ss_pred             CCCeEEEEEeCCCCeEEEEeeCC-------CcEEEEEecCCceeecccCCCCceEE-EEEeeCCCEEEEEecCCeEEEEe
Q psy2110         277 PSPILKVQFHPRNDHMFLVCPMR-------HAAVLVDTDGDHQIVPIDEDSDLSIV-ASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       277 ~~~v~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                       ..+..+  +|+|+.+++.+...       ..+++||  ++........+...+.. +.|+ ++ ++++++.++.+++| 
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-  288 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-  288 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-
Confidence             444444  99999877766443       4677777  44444444455666775 8899 88 88899999999999 


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecc
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI-RVYNHQ  392 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i-~i~d~~  392 (622)
                      +.+++... +..+...|.+++|+|  ..+++++.++.. .+|.++
T Consensus       289 ~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          289 IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            87666543 444577899999999  667777766654 666653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=6.3e-17  Score=157.64  Aligned_cols=241  Identities=12%  Similarity=0.129  Sum_probs=184.4

Q ss_pred             cceeEEEEcCCCCEEEEeeCC------------------------CcEEEEecCCcccccccccccCCCcccccccccce
Q psy2110         142 SLAVTCAFNKRGTLLAVGCND------------------------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA  197 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (622)
                      ..+.+++++|+|+++++...+                        +.|.+||..+++....+....          ....
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~----------~~~p   93 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL----------FYLP   93 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT----------CSSE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc----------cCCc
Confidence            445799999999999888777                        479999998887655443211          1246


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eEEEe---------ccCCcCeeEEEEcC-CCCEEEEEe-CCCcEEEEEC
Q psy2110         198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-IAKII---------SAHMHPVCSISWSR-NGYKIISAS-TDNNVCIWDV  265 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~s~-~~~~l~s~~-~d~~i~iwd~  265 (622)
                      ..++++++|+++++...++.|++|+..... .+..+         ..+......++++| ++..+++.+ .++.|++|+ 
T Consensus        94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A           94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            889999999988888888999999976442 44444         24445789999999 788777776 689999999 


Q ss_pred             CCCcEEEEEeCC-----------CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--cCCCCceEEEEEee--
Q psy2110         266 LTGECEQKYRFP-----------SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASFDR--  330 (622)
Q Consensus       266 ~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~--  330 (622)
                      .+++.+..+...           .....++++|++..++++...++.|++|+..++..+..+  ..+...+..++++|  
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~  252 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF  252 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence            567777766421           237899999997778888889999999999866665555  34456677888888  


Q ss_pred             ----CCCEEEEEecCCeEEEEeCCCccEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccc
Q psy2110         331 ----RGQHVVTGNSKGKVLVLSCPALELKASFK---ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       331 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                          +|+.+++...+..|++|+..+++.+..+.   .+.....+++++|+|..+++...++.|++|++..
T Consensus       253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                33333333345589999999999998874   5667789999999997777778899999999873

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2e-16  Score=154.03  Aligned_cols=241  Identities=9%  Similarity=0.111  Sum_probs=178.3

Q ss_pred             CcCeeEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCC
Q psy2110         236 MHPVCSISWSRNGYKIISASTD------------------------NNVCIWDVLTGECEQKYRF--PSPILKVQFHPRN  289 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~  289 (622)
                      -+.+.+++++++|+.+++...+                        +.|.+||..+++....+..  -..+..++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3578999999999988887776                        4799999999998876652  3478899999998


Q ss_pred             CeEEEEeeCCCcEEEEEecCCc-eeecc---------cCCCCceEEEEEee-CCCEEEEEe-cCCeEEEEeCCCccEEEE
Q psy2110         290 DHMFLVCPMRHAAVLVDTDGDH-QIVPI---------DEDSDLSIVASFDR-RGQHVVTGN-SKGKVLVLSCPALELKAS  357 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~~~~-~~~~~---------~~~~~~~~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~  357 (622)
                      . ++++...++.|++|+..... .+..+         ..+......++++| ++.++++.+ .++.|++|+ .+++.+..
T Consensus       103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            8 77888888999999986542 33333         23344678999999 788888876 689999999 66777777


Q ss_pred             EecCC----------CCEEEEEEcCC-CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-
Q psy2110         358 FKAST----------TAIKSIEFARR-GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-  425 (622)
Q Consensus       358 ~~~~~----------~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-  425 (622)
                      +....          ....+++++|+ +.++++...++.|++|+...         ...+..+...........++|+| 
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---------G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---------KEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---------CCEEEEECCTTTTTCEEEEEEETT
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---------CcEEEEEeccccCCCcceeeecCC
Confidence            65322          33789999998 66666667788999999872         23444443333333445678888 


Q ss_pred             -----CCCeEEEeeCCCCeEEEEECCCCeeEEEEe---cCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCC
Q psy2110         426 -----DGEYVCAGSARQHALYIWEKSVGNLVKILH---GTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       426 -----dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~  489 (622)
                           +|+..++.. .+..|++|+..+++.+..+.   ++... +..++++|+|.++++.. ++.|++|++.+
T Consensus       252 ~~~~~~g~~~v~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~~-p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQ-EPVQGFVMNFSSGEIIDVFKPVRKHFDM-PHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCCCTTCS-CCCCEEEEETTTCCEEEEECCSSSCCSS-EEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCEEeccC-CCcEEEEEEcCCCeEEEEEcCCCCccCC-eeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 333222222 25689999999999988874   45554 89999999997667666 89999999853

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=2.9e-16  Score=152.63  Aligned_cols=282  Identities=12%  Similarity=0.065  Sum_probs=197.1

Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      .++.|.+||..+++....+.........+     .....+++. +++++++...++.|.+||..+++.+..+.. .....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg-----~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~   87 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLG-----DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPR   87 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCB-----SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccC-----ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCc
Confidence            47899999999987665442110000000     124566664 345555666679999999999999888853 46788


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCC------CeEEEEEeCCCCeEEEEee-CCCcEEEEEecCCce
Q psy2110         241 SISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPS------PILKVQFHPRNDHMFLVCP-MRHAAVLVDTDGDHQ  312 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~  312 (622)
                      .++++++++ ++.+. .++.|.+||..+++....+....      ....+++  ++..++++.. .++.|.++|..+...
T Consensus        88 ~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           88 YIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE
T ss_pred             EEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE
Confidence            999999884 55554 78999999999999888887554      5667777  4555666655 488999999998876


Q ss_pred             eecccCCCCceEEEEEeeCCCEEEEEecC----------CeEEEEeCCCccEEEEEecC-CCCEEEEEEcCCCCEEEEEe
Q psy2110         313 IVPIDEDSDLSIVASFDRRGQHVVTGNSK----------GKVLVLSCPALELKASFKAS-TTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~  381 (622)
                      ...+... .....++++++|+++++...+          +.|.++|..+++....+... ......++|+|++++|+++.
T Consensus       165 ~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          165 VDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             EEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             EEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            6655543 234578899999877776654          78999999999888777643 24678999999999888876


Q ss_pred             CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee----CCCCeEEEEECCCCeeEEEEecC
Q psy2110         382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS----ARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       382 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~----~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      .  .|.+||.......       ....+..  .......++++|++..|.++.    ..++.|.+||.. |+.+..+...
T Consensus       244 ~--~v~~~d~~t~~~~-------~~~~~~~--~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G  311 (328)
T 3dsm_A          244 N--DIWRMPVEADRVP-------VRPFLEF--RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG  311 (328)
T ss_dssp             S--SEEEEETTCSSCC-------SSCSBCC--CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred             c--EEEEEECCCCcee-------eeeeecC--CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence            5  8999998732110       0001110  123345689999655555554    347899999998 9988888653


Q ss_pred             CCCceeEEEE
Q psy2110         458 KGELLLDVVW  467 (622)
Q Consensus       458 ~~~~v~~v~~  467 (622)
                      ..  ...++|
T Consensus       312 ~~--P~~~~~  319 (328)
T 3dsm_A          312 II--PGAFCW  319 (328)
T ss_dssp             ES--EEEEEE
T ss_pred             cC--cceEEE
Confidence            32  566666

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=2.2e-16  Score=155.38  Aligned_cols=255  Identities=11%  Similarity=0.102  Sum_probs=174.8

Q ss_pred             ceEEEEECCCCCEEEEEe---------CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC---C--cEE
Q psy2110         196 LAVTCAFNKRGTLLAVGC---------NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD---N--NVC  261 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~--~i~  261 (622)
                      .+..+++  ||+.++...         .++.|.+|++.+++.. .+    ..+..++|+|||++|+.++.+   +  .|+
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4667777  898887653         2567999999887654 33    568899999999999988754   2  488


Q ss_pred             EEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeC--------------------------CCcEEEEEecCCceeec
Q psy2110         262 IWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPM--------------------------RHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------------~~~i~~~d~~~~~~~~~  315 (622)
                      +|++.+++......... +..+.|+|+++.+++++..                          ...+++|++.++..+..
T Consensus        89 ~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~  167 (347)
T 2gop_A           89 VADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE  167 (347)
T ss_dssp             EEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence            88999888777776555 9999999999987777643                          25688899987765333


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCC---------eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKG---------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD---  383 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---  383 (622)
                      +.. . .+..++|+|+| +++++..++         .|.++|  +++. ..+..+ ..+..+  +|+|++|++++.+   
T Consensus       168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            333 3 67789999999 777775432         455556  5543 334434 455544  9999999888754   


Q ss_pred             -----CcEEEEecccccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         384 -----RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       384 -----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                           ..|++|| ..           ....+... ....+.. +.|+ || ++++++. ++.++|| +.+++....+ .+
T Consensus       239 ~~~~~~~l~~~d-~~-----------~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~~g~~~~~~-~~  300 (347)
T 2gop_A          239 YMSEHNKLYIYD-GK-----------EVMGILDE-VDRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IWDGEIKPIA-KG  300 (347)
T ss_dssp             CCCSSCEEEEEC-SS-----------CEEESSTT-CCSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EESSSEEEEE-CS
T ss_pred             CccccceEEEEC-CC-----------ceEecccc-CCcccCCccEEc-Cc-EEEEEec-CCcEEEE-EcCCceEEEe-cC
Confidence                 3577777 31           11111111 1223443 7899 88 7777776 8899999 8777654444 44


Q ss_pred             CCCceeEEEECCCCCEEEEEe-CCcE-EEeecC
Q psy2110         458 KGELLLDVVWHPVRPIIASIS-SGVV-SLWAQN  488 (622)
Q Consensus       458 ~~~~v~~v~~sp~~~~l~s~~-dg~v-~iw~~~  488 (622)
                      .+. |.+++|+|  .++++++ ++.. .||.++
T Consensus       301 ~~~-v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          301 RHW-IMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             SSE-EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             CCe-EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            444 99999999  6666666 5554 777664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.5e-15  Score=144.91  Aligned_cols=240  Identities=10%  Similarity=0.125  Sum_probs=174.2

Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-------CCCeEEEEEeCCCCeEEEEeeC-CCcEEEE
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-------PSPILKVQFHPRNDHMFLVCPM-RHAAVLV  305 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~-~~~i~~~  305 (622)
                      ++-..+.+++++++++.+++...++.|.+||.. ++....+..       ...+..+++.+.+..++++... ++.+.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455678999999999988888888999999987 666666542       1467889995434445665543 7889999


Q ss_pred             EecCCceeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeC
Q psy2110         306 DTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       306 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      +. .+..+..+. .+...+..++++++|+++++...++.|.+|+. +++.+..+.  .+...+.+++++++|+.+++.+.
T Consensus       106 d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            94 444444333 23456788999999998888778899999995 466666664  34457899999999997777777


Q ss_pred             CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC-eEEEEECCCCeeEEEEecCCC-C
Q psy2110         383 DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH-ALYIWEKSVGNLVKILHGTKG-E  460 (622)
Q Consensus       383 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~-~  460 (622)
                      ++.|++|+...          ..+..+...........++++++|+++++... ++ .|++|+. +++.+..+..+.. .
T Consensus       184 ~~~i~~~~~~g----------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-~~~~i~~~~~-~g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          184 AHCVKVFNYEG----------QYLRQIGGEGITNYPIGVGINSNGEILIADNH-NNFNLTIFTQ-DGQLISALESKVKHA  251 (286)
T ss_dssp             GTEEEEEETTC----------CEEEEESCTTTSCSEEEEEECTTCCEEEEECS-SSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred             CCEEEEEcCCC----------CEEEEEccCCccCCCcEEEECCCCCEEEEeCC-CCEEEEEECC-CCCEEEEEcccCCCC
Confidence            89999999752          22223322111133467899999988877765 54 9999995 5677777765432 2


Q ss_pred             ceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         461 LLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       461 ~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      .+.+++++|+++++++..+++|++|++.
T Consensus       252 ~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             CEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             cceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            2779999999987777449999999974

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.3e-15  Score=145.28  Aligned_cols=236  Identities=14%  Similarity=0.194  Sum_probs=174.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec------cCCcCeeEEEE-cCCCCEEEEEeC-CCcEEEEECCC
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS------AHMHPVCSISW-SRNGYKIISAST-DNNVCIWDVLT  267 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~-s~~~~~l~s~~~-d~~i~iwd~~~  267 (622)
                      .+.+++++++|+++++...++.|.+|+.. ++.+..+.      ++...+..+++ .++++.+++... ++.|++|| .+
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~  108 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY  108 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CC
Confidence            46889999999988888889999999976 55555553      23457889999 467765555533 78999999 66


Q ss_pred             CcEEEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         268 GECEQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       268 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                      ++.+..+..  ...+..++++|++. ++++...++.+.+|+.... ....+.  .+...+..++++++|+++++...++.
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~  186 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  186 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence            777776652  35689999999986 6777777889999996543 333332  34456789999999998888788899


Q ss_pred             EEEEeCCCccEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110         344 VLVLSCPALELKASFKAS--TTAIKSIEFARRGNCLLVNTGDR-LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK  420 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (622)
                      |++|+. +++.+..+..+  ...+.+++++++|+++++...++ .|++|+...          ..+..+...........
T Consensus       187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFD  255 (286)
T ss_dssp             EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEE
T ss_pred             EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCCCccee
Confidence            999997 45666666543  36789999999999888877775 999998652          23344433322233467


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCCC
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSVG  448 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~  448 (622)
                      ++++|+|+++++ +. ++.|++|++...
T Consensus       256 i~~~~~g~l~vs-~~-~~~v~v~~~~~~  281 (286)
T 1q7f_A          256 VALMDDGSVVLA-SK-DYRLYIYRYVQL  281 (286)
T ss_dssp             EEEETTTEEEEE-ET-TTEEEEEECSCC
T ss_pred             EEECCCCcEEEE-CC-CCeEEEEEcccc
Confidence            899999987766 55 889999997654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=8.4e-16  Score=150.26  Aligned_cols=267  Identities=14%  Similarity=0.108  Sum_probs=189.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-R  275 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~  275 (622)
                      +.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+++|+.++++..++.|.+||..+++..... .
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~   84 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS   84 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred             cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence            5667888888777776778888888   34556667777778899999999997778888899999999988876655 3


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCC----CcEEEEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEec------CCe
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMR----HAAVLVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNS------KGK  343 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~------dg~  343 (622)
                      ....+.+++++|++. ++++...+    +.+.+||..+......+  ......+..++++|+|+++++...      .+.
T Consensus        85 ~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           85 HKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             SSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            567899999999986 55555444    58999998776543222  223456888999999988877653      356


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceee-----ecccccee
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKL-----QDLVNKTM  417 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  417 (622)
                      |..++..+++.... ......+..++|+|+++.|+++ +.++.|++|++..        ....+..+     ........
T Consensus       164 l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~--------~g~~~~~~~~~~~~~~~~~~~  234 (333)
T 2dg1_A          164 VYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALED--------DGVTIQPFGATIPYYFTGHEG  234 (333)
T ss_dssp             EEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--------TSSSEEEEEEEEEEECCSSSE
T ss_pred             EEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC--------CCcCcccccceEEEecCCCCC
Confidence            77788766554432 2233457899999999866555 4578999999862        01111111     01111124


Q ss_pred             eeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC-----ceeEEEECCCCCEEEEEe
Q psy2110         418 WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE-----LLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       418 ~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~v~~v~~sp~~~~l~s~~  478 (622)
                      ...++++++|++.++... ++.|++||. .++.+..+..+...     .+.+++|+|++..|+.++
T Consensus       235 ~~~i~~d~~G~l~v~~~~-~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~  298 (333)
T 2dg1_A          235 PDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  298 (333)
T ss_dssp             EEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCceEECCCCCEEEEEcC-CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence            457899999997777665 788999998 57777777655320     389999999987776555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.75  E-value=1.4e-15  Score=147.09  Aligned_cols=294  Identities=12%  Similarity=0.093  Sum_probs=203.2

Q ss_pred             EEEEcCCCCEEEEeeC-----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------
Q psy2110         146 TCAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------  213 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------  213 (622)
                      .....|+++.+++...     ++.|.+.|..+++.+..+.....            .. ++++|||++++++.       
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~------------P~-va~spDG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL------------PN-PVVADDGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS------------CE-EEECTTSSCEEEEEEEEEETT
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC------------Cc-EEECCCCCEEEEEcccccccc
Confidence            3456799998888765     67999999999988877765432            23 89999999888775       


Q ss_pred             ---CCCeEEEEEcCCCceEEEeccCC-------cCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeE
Q psy2110         214 ---NDGRIVLWDFLTRGIAKIISAHM-------HPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPIL  281 (622)
Q Consensus       214 ---~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~  281 (622)
                         .++.|.+||..+++.+..+.-..       .....++|+|||++++++..  ++.|.++|+.+++.+..+..++.  
T Consensus       104 ~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--  181 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--  181 (386)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--
T ss_pred             cCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--
Confidence               35789999999999888775321       24567999999999998874  68999999999999999876542  


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecC-Cceee----cccCCCCce-EEEEEe-eCCCEEEEEecCCeEEEEeCCCcc-
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG-DHQIV----PIDEDSDLS-IVASFD-RRGQHVVTGNSKGKVLVLSCPALE-  353 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~----~~~~~~~~~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-  353 (622)
                       ....|.+...+++.+.||.+.+.++.. ++...    .+......+ ....|. ++|++++ .+.+|.|++.|+.+.. 
T Consensus       182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence             223354544555666677777777765 22211    111111112 123554 5775555 5568999999997654 


Q ss_pred             -EEEEEe----------cCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeecc
Q psy2110         354 -LKASFK----------ASTTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDL  412 (622)
Q Consensus       354 -~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  412 (622)
                       ....+.          ........++++++++.+++...          .+.|.++|+.         ..+.+..+.. 
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~---------t~kv~~~i~v-  329 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK---------TGERLAKFEM-  329 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT---------TCCEEEEEEE-
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC---------CCeEEEEEEC-
Confidence             332222          01123345778999998888653          2568899988         3444555442 


Q ss_pred             ccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         413 VNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       413 ~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                        ......++|++|++ +|+++...++.|.++|..+++.++.+.....  .+.|.+++|
T Consensus       330 --g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~--p~~l~~s~d  384 (386)
T 3sjl_D          330 --GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH--GPQVITTAD  384 (386)
T ss_dssp             --EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS--SCCEEEECC
T ss_pred             --CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC--CceeEECCc
Confidence              23456789999997 6777665588999999999999999876543  566777776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=7.1e-16  Score=166.86  Aligned_cols=236  Identities=9%  Similarity=-0.006  Sum_probs=171.1

Q ss_pred             eEEEEcCCCCEEEEeeCCC-----cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe--
Q psy2110         145 VTCAFNKRGTLLAVGCNDG-----RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR--  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--  217 (622)
                      ..++|||||++||.++.++     .|++||+.+++........            ..+..++|+|||+.|++++.++.  
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~------------~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER------------VKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE------------ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC------------cccceEEEEeCCCEEEEEEECCccc
Confidence            5899999999998776543     8999999998765432211            11356899999999999887765  


Q ss_pred             --------------EEEEEcCCCceE--EEe--ccCCcCeeEEEEcCCCCEEEEEeC-----CCcEEEEECCC------C
Q psy2110         218 --------------IVLWDFLTRGIA--KII--SAHMHPVCSISWSRNGYKIISAST-----DNNVCIWDVLT------G  268 (622)
Q Consensus       218 --------------i~iwd~~~~~~~--~~~--~~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~------~  268 (622)
                                    |++|++.+++..  ..+  ..|...+..+.|+|||++|+.++.     +..|++||+.+      +
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999887632  222  234556789999999999988765     56899999986      5


Q ss_pred             --cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCc--eeecccCCC--CceEEEEEeeCCCEEEEEe
Q psy2110         269 --ECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDH--QIVPIDEDS--DLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       269 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~l~~~~  339 (622)
                        .......+...+.. .|+|+++.+++.+..+   ..+.+|++.+..  ....+..+.  ..+..+++++++.++++..
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence              23333334444443 5889999887776544   368899987653  123333333  3577788887777888888


Q ss_pred             cCC--eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe----CCCcEEEEeccc
Q psy2110         340 SKG--KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT----GDRLIRVYNHQE  393 (622)
Q Consensus       340 ~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~i~d~~~  393 (622)
                      .++  .|.+|++.+++.+..+..+...+..+.++|+++.++...    ..+.|++||+.+
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            887  466778877888888888878889999999998766542    247899999873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=2.2e-15  Score=163.08  Aligned_cols=276  Identities=10%  Similarity=0.025  Sum_probs=188.2

Q ss_pred             CCCCEEEEEeCCC-----eEEEEEcCCCceEEEec------cCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCC
Q psy2110         204 KRGTLLAVGCNDG-----RIVLWDFLTRGIAKIIS------AHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLT  267 (622)
Q Consensus       204 ~~g~~l~~~~~dg-----~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~  267 (622)
                      |+|++++....++     .+.+.+...++....+.      +|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8898887665332     33444433444332221      3444688999999999998876543     899999999


Q ss_pred             CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC---------------cEEEEEecCCc----eeecccCCCCceEEEEE
Q psy2110         268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH---------------AAVLVDTDGDH----QIVPIDEDSDLSIVASF  328 (622)
Q Consensus       268 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------~i~~~d~~~~~----~~~~~~~~~~~~~~~~~  328 (622)
                      ++..........+..++|+||++.++++.....               .|++|++.++.    .+.....+...+..+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            988765433334678999999998777654332               39999998764    22233334556778999


Q ss_pred             eeCCCEEEEEec-----CCeEEEEeCCC------cc-EEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecc
Q psy2110         329 DRRGQHVVTGNS-----KGKVLVLSCPA------LE-LKASFKASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQ  392 (622)
Q Consensus       329 ~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~  392 (622)
                      +|+|++|+..+.     +..|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+|++.
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~  319 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT  319 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            999999988765     56899999876      43 35556666666655 488999988877653    359999987


Q ss_pred             cccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         393 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      ..       .....+.+..+.....+..++|++++.++++... ++  .|++|++.+|+.+..+..+.+. +..++++|+
T Consensus       320 ~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~~~~~l~~~~~~-v~~~~~s~d  390 (710)
T 2xdw_A          320 DP-------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEVGS-VVGYSGQKK  390 (710)
T ss_dssp             SC-------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCSSE-EEEEECCTT
T ss_pred             CC-------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCCEEEecCCCCce-EEEEecCCC
Confidence            31       1112233333322234566788877777777765 65  4777888788888888877555 899999999


Q ss_pred             CCEEEEE-e----CCcEEEeecCC
Q psy2110         471 RPIIASI-S----SGVVSLWAQNQ  489 (622)
Q Consensus       471 ~~~l~s~-~----dg~v~iw~~~~  489 (622)
                      ++.|+.. +    .+++++|++.+
T Consensus       391 ~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          391 DTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             CSEEEEEEECSSCCCEEEEEETTS
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCC
Confidence            9866533 2    37899999854

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.74  E-value=2.8e-16  Score=169.56  Aligned_cols=275  Identities=12%  Similarity=-0.010  Sum_probs=186.6

Q ss_pred             EEcCCCCEEEEecCCCC----eEEEEEcCCCceEEEEe------ccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          88 CFSGDGEYVCAGSARQH----ALYIWEKSVGNLVKILH------GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        88 ~~sp~~~~l~~~~~~~~----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      ..+|+|++++....+.+    .|.+.+...++....+.      +|...+                 .+++|||||++||
T Consensus        74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~-----------------~~~~~SPDG~~la  136 (695)
T 2bkl_A           74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSL-----------------GTWAVSWDGKKVA  136 (695)
T ss_dssp             CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEE-----------------EEEEECTTSSEEE
T ss_pred             CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEE-----------------EEEEECCCCCEEE
Confidence            34589999988765432    34444444444333332      232223                 5899999999998


Q ss_pred             -----EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe-------------EE
Q psy2110         158 -----VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR-------------IV  219 (622)
Q Consensus       158 -----s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-------------i~  219 (622)
                           .|+.+..|++||+.+++.+...  +...         .....++|+|||+.|++++.+..             |+
T Consensus       137 ~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~---------~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          137 FAQKPNAADEAVLHVIDVDSGEWSKVD--VIEG---------GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EEEEETTCSCCEEEEEETTTCCBCSSC--CBSC---------CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EEECCCCCceEEEEEEECCCCCCcCCc--ccCc---------ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence                 4445578999999998764110  1100         01146799999999999988765             99


Q ss_pred             EEEcCCCc----eEEEeccCCcCeeEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCe
Q psy2110         220 LWDFLTRG----IAKIISAHMHPVCSISWSRNGYKIISASTDN----NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDH  291 (622)
Q Consensus       220 iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  291 (622)
                      +|++.++.    .+.....|...+.++.|+|||++|+.++.++    .|++|+..+++......+...+....+ +++. 
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-  283 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-  283 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-
Confidence            99998876    3333334556789999999999998887666    688887766766665555556666666 6666 


Q ss_pred             EEEEee---CCCcEEEEEecCCce---eecccCC-CCceEEEEEeeCCCEEEEEecCCeEEEEeCC-CccEEEEEecC-C
Q psy2110         292 MFLVCP---MRHAAVLVDTDGDHQ---IVPIDED-SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP-ALELKASFKAS-T  362 (622)
Q Consensus       292 ~~~~~~---~~~~i~~~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~-~  362 (622)
                      +++.+.   .++.+.+||+.+...   ...+..+ ...+..++++ ++.++++...++..++|.+. +++....+..+ .
T Consensus       284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~  362 (695)
T 2bkl_A          284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGV  362 (695)
T ss_dssp             EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSS
T ss_pred             EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCC
Confidence            666655   357899999876542   2222222 4456777887 67788888889887777554 45666666655 5


Q ss_pred             CCEEEEEEcCCCCEEEEEeC----CCcEEEEeccc
Q psy2110         363 TAIKSIEFARRGNCLLVNTG----DRLIRVYNHQE  393 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~----d~~i~i~d~~~  393 (622)
                      ..+..++++|+++.++....    .+.|++||+.+
T Consensus       363 ~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          363 GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            67788899999987775432    46899999873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.73  E-value=5.2e-14  Score=138.47  Aligned_cols=276  Identities=13%  Similarity=0.065  Sum_probs=191.9

Q ss_pred             EcCCCCEEEEeeC--CC---cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------
Q psy2110         149 FNKRGTLLAVGCN--DG---RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------  213 (622)
Q Consensus       149 ~s~d~~~l~s~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------  213 (622)
                      ..|++++++++..  ..   +|.+||..+++.+..+....            .. .++++|||++|+++.          
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~------------~p-~i~~spDg~~lyv~n~~~~~~~rg~   94 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF------------LP-NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC------------CC-CeEECCCCCEEEEEeccccccccCC
Confidence            4477877777653  22   88999999988765554322            12 789999999999886          


Q ss_pred             CCCeEEEEEcCCCceEEEeccC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE-EeCCCCeEEE
Q psy2110         214 NDGRIVLWDFLTRGIAKIISAH-------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQK-YRFPSPILKV  283 (622)
Q Consensus       214 ~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~v~~~  283 (622)
                      .++.|.+||..+.+.+..+...       ......+.|+|||++|+++..  ++.|.++| .+++.+.. +..+..   +
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~  170 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---Y  170 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---E
Confidence            3678999999988877766432       123458999999999998874  47899999 99998888 765443   5


Q ss_pred             EEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-----CCCC-ceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EE
Q psy2110         284 QFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-----EDSD-LSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LK  355 (622)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~  355 (622)
                      .+.|+++..+++...++.+.+++. +.+......     .... ......+.+++..++..+..+.+.+.|+....  .+
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~  249 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence            566777777788888999999999 655442211     1111 12234567776665555577899999987553  22


Q ss_pred             EEEec----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110         356 ASFKA----------STTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK  415 (622)
Q Consensus       356 ~~~~~----------~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (622)
                      ..+..          .......++++|+++.++++..          .+.|.++|..         ..+.+..+...   
T Consensus       250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~---------t~~vv~~i~~g---  317 (373)
T 2mad_H          250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL---------VGQTSSQISLG---  317 (373)
T ss_pred             eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC---------CCEEEEEEECC---
Confidence            33321          1122445789999998887653          3579999987         33444444321   


Q ss_pred             eeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         416 TMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       416 ~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      .....++|+|||+ +++++...++.|.++|..+++.++.+
T Consensus       318 ~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            1345789999999 66666645789999999999998874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=7.8e-15  Score=142.53  Aligned_cols=252  Identities=14%  Similarity=0.084  Sum_probs=174.3

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      ..+++.. ++..++.. .++.|.+||..+++.+.++.....+                  ..+++++++++.++...++.
T Consensus        47 ~~i~~~~-~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~p------------------~~i~~~~~g~lyv~~~~~~~  106 (328)
T 3dsm_A           47 QSMVIRD-GIGWIVVN-NSHVIFAIDINTFKEVGRITGFTSP------------------RYIHFLSDEKAYVTQIWDYR  106 (328)
T ss_dssp             EEEEEET-TEEEEEEG-GGTEEEEEETTTCCEEEEEECCSSE------------------EEEEEEETTEEEEEEBSCSE
T ss_pred             eEEEEEC-CEEEEEEc-CCCEEEEEECcccEEEEEcCCCCCC------------------cEEEEeCCCeEEEEECCCCe
Confidence            3566643 33333333 3589999999999998888644332                  48999999854444447899


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDFLTRGIAKIISAHMHPVCSI  242 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  242 (622)
                      |.+||..+++....+......   +..   .....+++  ++..|+++.  .++.|.++|+.+++....+... .....+
T Consensus       107 v~~iD~~t~~~~~~i~~g~~~---~~~---~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i  177 (328)
T 3dsm_A          107 IFIINPKTYEITGYIECPDMD---MES---GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSL  177 (328)
T ss_dssp             EEEEETTTTEEEEEEECTTCC---TTT---CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCC
T ss_pred             EEEEECCCCeEEEEEEcCCcc---ccC---CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccce
Confidence            999999998776655433200   000   01234556  344555554  4889999999999888777653 345789


Q ss_pred             EEcCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         243 SWSRNGYKIISASTD----------NNVCIWDVLTGECEQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      +++++|++++++..+          +.|.++|..+++....+..  ......++++|+++.++++..   .+.++|..+.
T Consensus       178 ~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~  254 (328)
T 3dsm_A          178 VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEAD  254 (328)
T ss_dssp             EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCS
T ss_pred             EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCC
Confidence            999999877666554          7899999999998877774  347899999999987766544   8999999776


Q ss_pred             ceeec--ccCCCCceEEEEEee-CCCEEEEE----ecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         311 HQIVP--IDEDSDLSIVASFDR-RGQHVVTG----NSKGKVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       311 ~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                      .....  +.........++++| ++..+++.    ..++.|.+||.. ++.+.++... ..-..++|
T Consensus       255 ~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~  319 (328)
T 3dsm_A          255 RVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW  319 (328)
T ss_dssp             SCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred             ceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence            54321  122245678899999 45555555    567899999988 8888877643 22244554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=6.1e-15  Score=141.42  Aligned_cols=228  Identities=12%  Similarity=0.035  Sum_probs=167.5

Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+++|+|+++ +++++..++.|..|+..++  ...+..+.           ..+.+++++++|+++++...++.|.+||.
T Consensus        31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~-----------~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS-----------HHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC-----------SSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC-----------CCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            5899999998 7788888999999998876  33333221           24789999999998877777789999999


Q ss_pred             CCCceEEEeccC----CcCeeEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110         224 LTRGIAKIISAH----MHPVCSISWSRNGYKIISAS-----------------TDNNVCIWDVLTGECEQKYRFPSPILK  282 (622)
Q Consensus       224 ~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~v~~  282 (622)
                      .+++........    ...+..++++++|+++++.+                 ..+.|..++.. ++.............
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            887755443221    23467899999999888732                 13456666655 555544455667889


Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEEec-CCce---eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEE
Q psy2110         283 VQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQ---IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                      ++|+|+++.+ ++...++.+++|++. .+..   ...+..+...+..++++++|+++++.  ++.|.+|+.. ++.+..+
T Consensus       177 i~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          177 LAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             EEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred             EEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence            9999999977 888888999999996 3222   12223344456678999999876665  7889999986 7888888


Q ss_pred             ecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEecc
Q psy2110         359 KASTTAIKSIEF-ARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       359 ~~~~~~i~~~~~-s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ..+.. +++++| +|+++.|++++.++ +..++..
T Consensus       253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          253 LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence            87777 899999 68999899888763 3344443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.71  E-value=1.2e-13  Score=135.96  Aligned_cols=273  Identities=10%  Similarity=0.036  Sum_probs=190.7

Q ss_pred             ECCCCCEEEEEeC--CC---eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECC
Q psy2110         202 FNKRGTLLAVGCN--DG---RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVL  266 (622)
Q Consensus       202 ~s~~g~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~  266 (622)
                      ..|+++++++...  ..   .|.++|..+++.+..+.....+  .++++|||++++.+.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777777653  22   7899999999988888765444  999999999999886          35789999999


Q ss_pred             CCcEEEEEeCC--------CCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCceeec-ccCCCCceEEEEEeeCC-CEE
Q psy2110         267 TGECEQKYRFP--------SPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQIVP-IDEDSDLSIVASFDRRG-QHV  335 (622)
Q Consensus       267 ~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~l  335 (622)
                      +.+.+..+...        .....+.++|++++++++... ++.+.++| .+.+.+.. +....    ++.+.+++ +.+
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~  180 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTF  180 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceE
Confidence            99888877643        235689999999988777654 68899999 88877666 54322    23445555 455


Q ss_pred             EEEecCCeEEEEeCCCccEEEEEe-----cCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceee
Q psy2110         336 VTGNSKGKVLVLSCPALELKASFK-----ASTTA-IKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKL  409 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~-i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  409 (622)
                      ++.+.||.+.+++. +++......     ....+ .....+.+++..++..+..+.+.+.|+...       ....+..+
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~-------~~~v~~~~  252 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA-------GATNKAPI  252 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC-------cceEeeee
Confidence            66778999999999 887664322     11122 123456777666666667888999998631       11111111


Q ss_pred             ecc--------ccceeeeeEEEcCCCCeEEEeeCC---------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110         410 QDL--------VNKTMWKKCCFSGDGEYVCAGSAR---------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       410 ~~~--------~~~~~~~~~~~spdg~~l~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                      ...        ........++++||++.++++...         .+.|.++|..+++.+..+.... . ...++|+||++
T Consensus       253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~-p~~i~~s~Dg~  330 (373)
T 2mad_H          253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-D-VDAISVAQDGG  330 (373)
T ss_pred             eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-C-cCeEEECCCCC
Confidence            100        001112336899999988776431         3579999999999999986544 2 78999999999


Q ss_pred             -EEEEEe--CCcEEEeecCCcc
Q psy2110         473 -IIASIS--SGVVSLWAQNQVE  491 (622)
Q Consensus       473 -~l~s~~--dg~v~iw~~~~~~  491 (622)
                       +++++.  ++.|.++|+.+.+
T Consensus       331 ~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          331 PDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             eEEEEEcCCCCeEEEEECCCCC
Confidence             777765  7999999997544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=2.3e-13  Score=130.48  Aligned_cols=272  Identities=8%  Similarity=0.019  Sum_probs=190.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE-eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      .+.++++.++|+++++...++.|.+|+.. ++.... +..+...+.+++++++|..+++...++.|..||.. ++. ..+
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence            47899999999988776667899999987 544332 22345678999999999877777667889999976 443 333


Q ss_pred             e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .   ....+..+++.+++. ++++...++.+..+|................+..++++++|+.+++...++.|..||. +
T Consensus        93 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence            3   345788999999875 5666666788999988333322233334556789999999988887777789999998 6


Q ss_pred             ccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110         352 LELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV  430 (622)
Q Consensus       352 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  430 (622)
                      ++.... +......+.+++++++|+.+++...++.|.+|+...           .+..+........+..++++++|+..
T Consensus       171 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          171 GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSG-----------EITEFKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-----------CEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCC-----------cEEEEECCCCCCCceeEEECCCCCEE
Confidence            665442 233456688999999999766666678899998731           11222212223445678999999866


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEEEe--cCCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKILH--GTKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      ++... ++.|.+|+. +++. ..+.  .+... +.++++ +++.+.++...+.+..+++.
T Consensus       240 v~~~~-~~~i~~~d~-~g~~-~~~~~~~~~~~-~~~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          240 FTEWG-ANKIGRLTS-NNII-EEYPIQIKSAE-PHGICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             EEETT-TTEEEEEET-TTEE-EEEECSSSSCC-EEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             EeccC-CceEEEECC-CCce-EEEeCCCCCCc-cceEEe-cCCCEEEEecCCcEEEEEcC
Confidence            55544 778999998 4653 3332  33333 899999 88887777655666666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.71  E-value=1.5e-14  Score=139.90  Aligned_cols=277  Identities=11%  Similarity=0.074  Sum_probs=197.0

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEE
Q psy2110         200 CAFNKRGTLLAVGCN-----DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWD  264 (622)
Q Consensus       200 ~~~s~~g~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd  264 (622)
                      ....|+++.+++...     ++.|.++|..+++.+..+.....+  .++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            355789999888865     579999999999999888865555  499999999888775          357899999


Q ss_pred             CCCCcEEEEEeCC--------CCeEEEEEeCCCCeEEEEee-CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEE
Q psy2110         265 VLTGECEQKYRFP--------SPILKVQFHPRNDHMFLVCP-MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHV  335 (622)
Q Consensus       265 ~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  335 (622)
                      ..+.+.+..+..+        .....+.++|+|++++++.. .++.+.++|+.+.+.+..+.....   ...+....+.+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCcee
Confidence            9999999888643        24667999999998877765 378999999999988777754321   23344455677


Q ss_pred             EEEecCCeEEEEeCCC-ccEEEEEecC----CCCEE-EEEEc-CCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         336 VTGNSKGKVLVLSCPA-LELKASFKAS----TTAIK-SIEFA-RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       336 ~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      ++.+.||.+.+.++.+ ++.......+    ...+. ...|. ++|+ ++..+.++.|++.|+...       ....+..
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~-------~~~v~~~  264 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSG-------DAKFLPA  264 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTS-------SCEECCC
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCC-------cceeecc
Confidence            7888899999999876 5543322111    11221 24564 6775 444666899999998631       1111222


Q ss_pred             ee--------ccccceeeeeEEEcCCCCeEEEeeCC---------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110         409 LQ--------DLVNKTMWKKCCFSGDGEYVCAGSAR---------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       409 ~~--------~~~~~~~~~~~~~spdg~~l~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                      +.        .......+..++++++++.++.....         .+.|.++|+.+++.++.+....  .+..++++|++
T Consensus       265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~  342 (386)
T 3sjl_D          265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDE  342 (386)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSS
T ss_pred             eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCC
Confidence            21        00111223347889999988876421         2579999999999999887544  28899999999


Q ss_pred             C-EEEEEe--CCcEEEeecCCcc
Q psy2110         472 P-IIASIS--SGVVSLWAQNQVE  491 (622)
Q Consensus       472 ~-~l~s~~--dg~v~iw~~~~~~  491 (622)
                      + +|+++.  ++.|.++|..+..
T Consensus       343 ~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          343 KPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCC
T ss_pred             CeEEEEEcCCCCeEEEEECCCCc
Confidence            7 666654  8999999986543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.7e-13  Score=131.39  Aligned_cols=275  Identities=9%  Similarity=-0.019  Sum_probs=188.3

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .++++.++|+++++...++.|.+|+.. +... .+.....         ...+..++++++|+++++...++.|..|+..
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTP---------DAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSST---------TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcc---------cCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            699999999987776667899999987 5432 2221110         1347889999999988877768889999976


Q ss_pred             CCceE-EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         225 TRGIA-KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       225 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                       ++.. ..+......+.++++.++|+.+++...++.|.+||. +++......  ....+..+++.+++. ++++...++.
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~  163 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNA  163 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTE
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCE
Confidence             3322 222234567899999999987777777789999998 565543322  345688999999885 5666666788


Q ss_pred             EEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEE
Q psy2110         302 AVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       302 i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      +..+|. ++... .........+..++++++|+++++...++.|.+|+. +++.... +..+...+.+++++++|+.+++
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            999998 43332 223334456778999999997777767889999998 6664432 2334567899999999996666


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCe
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~  449 (622)
                      ...++.|.+|+...           .+..+........+.++++ ++|++.++..  .+.|..++..+++
T Consensus       242 ~~~~~~i~~~d~~g-----------~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~--~~~l~~~~~~~~~  297 (299)
T 2z2n_A          242 EWGANKIGRLTSNN-----------IIEEYPIQIKSAEPHGICF-DGETIWFAME--CDKIGKLTLIKDN  297 (299)
T ss_dssp             ETTTTEEEEEETTT-----------EEEEEECSSSSCCEEEEEE-CSSCEEEEET--TTEEEEEEEC---
T ss_pred             ccCCceEEEECCCC-----------ceEEEeCCCCCCccceEEe-cCCCEEEEec--CCcEEEEEcCccc
Confidence            55778999998741           1222221112234567788 8888776654  4567777766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=1.3e-14  Score=138.99  Aligned_cols=233  Identities=11%  Similarity=0.060  Sum_probs=168.0

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ...+++|+|+|+ +++++..++.|..|+..++  ...+..+...+.+++++++|+++++...++.|.+||..+++.....
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence            467899999998 7778888999999999877  5666667788999999999998777766789999999888865543


Q ss_pred             eC-----CCCeEEEEEeCCCCeEEEE----ee-------------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         275 RF-----PSPILKVQFHPRNDHMFLV----CP-------------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       275 ~~-----~~~v~~~~~~~~~~~~~~~----~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      ..     ...+..++++|+|. ++++    +.             ..+.+..++..  .....+..+......++|+|+|
T Consensus       107 ~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             CEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTS
T ss_pred             eccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCC
Confidence            31     23466799999987 4554    22             12345555544  3333444555667889999999


Q ss_pred             CEEEEEecCCeEEEEeCC-CccE---EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         333 QHVVTGNSKGKVLVLSCP-ALEL---KASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       333 ~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      +.+++.+.++.|.+|++. +++.   ...+..+...+.+++++++|+++++.  ++.|.+|+...          ..+..
T Consensus       184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g----------~~~~~  251 (296)
T 3e5z_A          184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG----------DELGR  251 (296)
T ss_dssp             CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS----------CEEEE
T ss_pred             CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC----------CEEEE
Confidence            999777778999999986 5554   33333345567789999999866555  78899998752          23334


Q ss_pred             eeccccceeeeeEEE-cCCCCeEEEeeCCCCeEEEEECCCCee
Q psy2110         409 LQDLVNKTMWKKCCF-SGDGEYVCAGSARQHALYIWEKSVGNL  450 (622)
Q Consensus       409 ~~~~~~~~~~~~~~~-spdg~~l~~~~~~d~~i~iwd~~~~~~  450 (622)
                      +.....   +.+++| +|+++.|++++. + .++-++..+.++
T Consensus       252 ~~~~~~---~~~~~f~~~d~~~L~v~t~-~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          252 VLTPQT---TSNLCFGGPEGRTLYMTVS-T-EFWSIETNVRGL  289 (296)
T ss_dssp             EECSSC---CCEEEEESTTSCEEEEEET-T-EEEEEECSCCBC
T ss_pred             EECCCC---ceeEEEECCCCCEEEEEcC-C-eEEEEEcccccc
Confidence            433222   567889 689999988885 4 577777776654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=1.7e-14  Score=135.77  Aligned_cols=214  Identities=13%  Similarity=0.086  Sum_probs=166.1

Q ss_pred             CCCEEEEecCCCCeEEEEEcCCCceEEEEeccC-cceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110          92 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  170 (622)
Q Consensus        92 ~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~  170 (622)
                      .++.|++++.+ +.|.+||.++|+.+..+..+. ..+                 +++.++|+|++|++  .++.|..||.
T Consensus         4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~-----------------~~~~~~pdG~ilvs--~~~~V~~~d~   63 (276)
T 3no2_A            4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWEC-----------------NSVAATKAGEILFS--YSKGAKMITR   63 (276)
T ss_dssp             CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCC-----------------CEEEECTTSCEEEE--CBSEEEEECT
T ss_pred             CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCC-----------------cCeEECCCCCEEEe--CCCCEEEECC
Confidence            45778888865 999999999999999998876 233                 58999999998883  4678999998


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceEEEec------cCCcCeeEEE
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGIAKIIS------AHMHPVCSIS  243 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~  243 (622)
                       +|+.+..+.....          ..+.++.+.++|+++++.+. ++.+..++. +++.+..+.      .+......++
T Consensus        64 -~G~~~W~~~~~~~----------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           64 -DGRELWNIAAPAG----------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             -TSCEEEEEECCTT----------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             -CCCEEEEEcCCCC----------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence             7887777765321          13678899999999999887 777877775 677766654      2223456678


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC----
Q psy2110         244 WSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED----  319 (622)
Q Consensus       244 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----  319 (622)
                      +.++|+++++...++.|..||.. |+.+..+.....+.++...+++. +++++..++.+..+|..+++.+..+...    
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~  209 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEG  209 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBS
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC
Confidence            89999999999999999999988 99999998766777888888876 5666777778999999888777666432    


Q ss_pred             --CCceEEEEEeeCCCEEEEEe
Q psy2110         320 --SDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       320 --~~~~~~~~~~~~~~~l~~~~  339 (622)
                        ...+..++..++|..+++..
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccccceEcCCCCEEEEec
Confidence              12356777888888877763

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=4.1e-15  Score=160.36  Aligned_cols=275  Identities=8%  Similarity=-0.015  Sum_probs=176.9

Q ss_pred             CCCCCEEEEEeCCC---e--EEEEEcCCCceEEEec------cCCcCeeEEEEcCCCCEEEEE-----eCCCcEEEEECC
Q psy2110         203 NKRGTLLAVGCNDG---R--IVLWDFLTRGIAKIIS------AHMHPVCSISWSRNGYKIISA-----STDNNVCIWDVL  266 (622)
Q Consensus       203 s~~g~~l~~~~~dg---~--i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~  266 (622)
                      +|+|++++....++   .  |.+.+...+.....+.      +|...+.+++|||||++|+.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899888776543   2  3444444444333332      355578999999999999844     334689999999


Q ss_pred             CCcEE-EEEeCCCCeEEEEEeCCCCeEEEEeeCC------------CcEEEEEecCCc----eeecccCCCCceEEEEEe
Q psy2110         267 TGECE-QKYRFPSPILKVQFHPRNDHMFLVCPMR------------HAAVLVDTDGDH----QIVPIDEDSDLSIVASFD  329 (622)
Q Consensus       267 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~  329 (622)
                      +++.+ ...........++|+||++.++++....            ..|++|++.++.    .+.....+...+..+.|+
T Consensus       156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            99864 1111112226899999999766655432            239999998765    333334455678899999


Q ss_pred             eCCCEEEEEecCC----eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecccccccCCCC
Q psy2110         330 RRGQHVVTGNSKG----KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG----DRLIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       330 ~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~  401 (622)
                      |+|++|+..+.++    .|++++..+++. ..+..+...+....+ ++|. |+..+.    ++.|.+|++...       
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~-------  305 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP-------  305 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC-------
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC-------
Confidence            9999998877665    778887666554 344455555666666 5666 555443    578999998731       


Q ss_pred             CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC-CCeeEEEEecCCCCceeEEEECCCCCEEEEEe--
Q psy2110         402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRPIIASIS--  478 (622)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--  478 (622)
                      .......+........+..++|+ ++.++++... ++..+||.+. +++....+..+....+..++++|+++.|+...  
T Consensus       306 ~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          306 ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            11112333222223345567777 6666666665 7777776544 46666667666333488899999998665332  


Q ss_pred             ---CCcEEEeecCC
Q psy2110         479 ---SGVVSLWAQNQ  489 (622)
Q Consensus       479 ---dg~v~iw~~~~  489 (622)
                         .++|++|++.+
T Consensus       384 ~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          384 FTTPRQIYKTSVST  397 (695)
T ss_dssp             TTEEEEEEEEETTT
T ss_pred             CCCCCEEEEEECCC
Confidence               37899999864

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.67  E-value=3.7e-14  Score=139.87  Aligned_cols=276  Identities=15%  Similarity=0.128  Sum_probs=195.1

Q ss_pred             CCCCEEEEeeCC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CC
Q psy2110         151 KRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------ND  215 (622)
Q Consensus       151 ~d~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~d  215 (622)
                      ++++.++++...     +.|.++|..+++.+..+.....            . .++++|||++|+++.          .+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~------------P-gia~SpDgk~lyVan~~~~~~~~G~~~  148 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL------------P-HPVAAEDGSFFAQASTVFERIARGKRT  148 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS------------C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC------------C-ceEECCCCCEEEEEeccccccccCCCC
Confidence            567766666542     6999999999988877765431            2 789999999888876          36


Q ss_pred             CeEEEEEcCCCceEEEeccC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEe
Q psy2110         216 GRIVLWDFLTRGIAKIISAH-------MHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPILKVQFH  286 (622)
Q Consensus       216 g~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  286 (622)
                      +.|.++|..+++.+..+.-.       ......+.++|||++++.+..  ++.|.+.|+.+++.+..+.....   ....
T Consensus       149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~  225 (426)
T 3c75_H          149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIF  225 (426)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeec
Confidence            78999999999988777521       134567899999999999874  57899999999999998886442   3445


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecCCceee----cccCCCCc-eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE--EEEe
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDGDHQIV----PIDEDSDL-SIVASFDRRGQHVVTGNSKGKVLVLSCPALELK--ASFK  359 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~  359 (622)
                      |++...+++.+.++.+.+.+....+...    .+...... ...+.+++++..++..+..+.+.+.|.......  ..+.
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~  305 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE  305 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee
Confidence            6555566667777877777774433321    11111111 123567899888887788899999998655422  1111


Q ss_pred             c----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecccccccCCCCCCCcceeeeccccceeee
Q psy2110         360 A----------STTAIKSIEFARRGNCLLVNTG----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWK  419 (622)
Q Consensus       360 ~----------~~~~i~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (622)
                      .          .......++++|+++++++...          ++.|.++|..         ..+.+..+...   ....
T Consensus       306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~---------T~kvv~~I~vg---~~P~  373 (426)
T 3c75_H          306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE---------TGERINKIELG---HEID  373 (426)
T ss_dssp             SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT---------TCCEEEEEEEE---EEEC
T ss_pred             eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC---------CCeEEEEEECC---CCcC
Confidence            0          0111223689999988777642          3579999988         34455555322   2346


Q ss_pred             eEEEcCCCC-eEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         420 KCCFSGDGE-YVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       420 ~~~~spdg~-~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      .+.|+|||+ ++++....++.|.++|+.+++.++.+
T Consensus       374 gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          374 SINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            789999999 88888755899999999999999887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=2.4e-14  Score=135.22  Aligned_cols=236  Identities=11%  Similarity=0.058  Sum_probs=167.3

Q ss_pred             eEEEEcCCCCEEE-EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+++++++|++++ +.+.++.|.+|+..++.........           ...+.+++++++|+++++.. ++.|.+|+.
T Consensus        27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~-----------~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-----------LYQPQGLAVDGAGTVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCS-----------CCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred             cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCC-----------cCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence            5999999999777 5467889999987654322111111           02356789999999666655 889999998


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      ...............+.+++++++|+.+++...++.|.+|+..+........ ....+..+++++++. ++++...++.+
T Consensus        95 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i  173 (270)
T 1rwi_B           95 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRV  173 (270)
T ss_dssp             TCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEE
T ss_pred             CCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEE
Confidence            7654432222333578999999999877777777899999866554433222 224678899999886 67777778899


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  382 (622)
                      .+|+...................++++++|..+++...++.|.+|+............+...+.+++++++|+.+++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence            99998776554433333366788999999987777777889999998765443322233357899999999998788888


Q ss_pred             CCcEEEEeccc
Q psy2110         383 DRLIRVYNHQE  393 (622)
Q Consensus       383 d~~i~i~d~~~  393 (622)
                      ++.|++|++..
T Consensus       254 ~~~v~~~~~~~  264 (270)
T 1rwi_B          254 NDRVVKLTSLE  264 (270)
T ss_dssp             GTEEEEECCCG
T ss_pred             CCEEEEEcCCC
Confidence            99999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=3.2e-14  Score=134.34  Aligned_cols=239  Identities=10%  Similarity=0.013  Sum_probs=165.3

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      ...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++|+.+++.. ++.|.+||..+.... .+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            467899999999776 446788999998765543322223345688999999998655555 889999998765543 23


Q ss_pred             e--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         275 R--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       275 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      .  ....+..+++.+++. ++++...++.+.+|+..+................++++++|+++++...++.|.+|+....
T Consensus       103 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             ecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            2  225688999999886 6666667788999876554433322233345678999999997777777889999998876


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ........+...+.+++++++|..+++...++.|.+|+....          ...... .........++++++|+++++
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~----------~~~~~~-~~~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST----------TSTVLP-FTGLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS----------CCEECC-CCSCSCEEEEEECTTCCEEEE
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC----------cceeec-cCCCCCceeEEECCCCCEEEE
Confidence            655433344467899999999977777667889999998631          111111 111133467899999986666


Q ss_pred             eeCCCCeEEEEECCCCe
Q psy2110         433 GSARQHALYIWEKSVGN  449 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~  449 (622)
                      ... ++.|+++++...+
T Consensus       251 ~~~-~~~v~~~~~~~~~  266 (270)
T 1rwi_B          251 DRG-NDRVVKLTSLEHH  266 (270)
T ss_dssp             EGG-GTEEEEECCCGGG
T ss_pred             ECC-CCEEEEEcCCCcc
Confidence            665 8899999987654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.65  E-value=5.9e-14  Score=138.44  Aligned_cols=275  Identities=11%  Similarity=0.057  Sum_probs=194.7

Q ss_pred             CCCCEEEEEeCC-----CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECCCC
Q psy2110         204 KRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVLTG  268 (622)
Q Consensus       204 ~~g~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~  268 (622)
                      ++++.+++....     +.|.++|..+++.+..+.....+  .++++|||++|+.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            567777666543     69999999999999988866566  899999999888876          3678999999999


Q ss_pred             cEEEEEeCC--------CCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCceeecccCCCCceEEEEEeeCC-CEEEEE
Q psy2110         269 ECEQKYRFP--------SPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTG  338 (622)
Q Consensus       269 ~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  338 (622)
                      +.+..+...        .....+.++|++++++++... ++.+.++|+.+.+.+..+.....    ....|++ +.+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            999888643        345678999999987777654 68899999999887776654321    2233433 566667


Q ss_pred             ecCCeEEEEeCCCccEEEEE----ecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--
Q psy2110         339 NSKGKVLVLSCPALELKASF----KASTTAI-KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--  411 (622)
Q Consensus       339 ~~dg~i~i~d~~~~~~~~~~----~~~~~~i-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--  411 (622)
                      +.||.+.+.+..+++.....    .....++ ..+.+.+++..++..+..+.|.+.|+.....       ..+..+..  
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-------~v~~~~~~~~  308 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-------TFRAPIEALT  308 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-------EECCCEESSC
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-------EEeeeeeecc
Confidence            77888888887666554321    1111111 2356899999888888889999999863110       00111100  


Q ss_pred             ----c--ccceeeeeEEEcCCCCeEEEeeC---------CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEE
Q psy2110         412 ----L--VNKTMWKKCCFSGDGEYVCAGSA---------RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIA  475 (622)
Q Consensus       412 ----~--~~~~~~~~~~~spdg~~l~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~  475 (622)
                          .  ........++++|+++.+++...         ..+.|.++|..+.+.++.+.....  ...++|+|+++ +++
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~--P~gia~spDg~~~ly  386 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE--IDSINVSQDAEPLLY  386 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE--ECEEEECCSSSCEEE
T ss_pred             ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC--cCeEEEccCCCEEEE
Confidence                0  00011123689999998777642         134799999999999999875442  88999999999 888


Q ss_pred             EEe--CCcEEEeecCCcccc
Q psy2110         476 SIS--SGVVSLWAQNQVENW  493 (622)
Q Consensus       476 s~~--dg~v~iw~~~~~~~~  493 (622)
                      ++.  ++.|.++|+.+....
T Consensus       387 v~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEE
T ss_pred             EEcCCCCeEEEEECCCCCEE
Confidence            776  799999999765433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=2.4e-13  Score=131.42  Aligned_cols=238  Identities=13%  Similarity=0.125  Sum_probs=170.7

Q ss_pred             eEEEEcCCCCEEEE-------eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-CCEEEEEeCCC
Q psy2110         145 VTCAFNKRGTLLAV-------GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-GTLLAVGCNDG  216 (622)
Q Consensus       145 ~~~~~s~d~~~l~s-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg  216 (622)
                      .+++|++++.++++       +..++.|.+|+..+++........    ..+   ....+..++++++ |+++++. ..+
T Consensus        21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~---~~~~~~~i~~~~~~g~l~v~~-~~~   92 (314)
T 1pjx_A           21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE----VNG---YGGIPAGCQCDRDANQLFVAD-MRL   92 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE----ETT---EECCEEEEEECSSSSEEEEEE-TTT
T ss_pred             cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc----cCC---CCCCCceEEEecCCCcEEEEE-CCC
Confidence            58999999988887       677899999998777653221100    000   0124788999999 7655544 455


Q ss_pred             eEEEEEcCCCceEEE-ecc----CCcCeeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEEeC
Q psy2110         217 RIVLWDFLTRGIAKI-ISA----HMHPVCSISWSRNGYKIISASTD---------------NNVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~s~~~d---------------~~i~iwd~~~~~~~~~~~~  276 (622)
                      .|.+|+.. ++.... ...    ....+.+++++++|+.+++...+               +.|..|+.. ++.......
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~  170 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA  170 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence            79999987 665433 221    12458899999999877776554               567778766 665554444


Q ss_pred             CCCeEEEEEe----CCCCeEEEEeeCCCcEEEEEec-CCc-----eeecccCCC-CceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         277 PSPILKVQFH----PRNDHMFLVCPMRHAAVLVDTD-GDH-----QIVPIDEDS-DLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       277 ~~~v~~~~~~----~~~~~~~~~~~~~~~i~~~d~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      ......++++    |+++.++++...++.+.+|+.. .+.     ....+..+. .....++++++|+++++...++.|.
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~  250 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence            4557889999    9988777777778999999986 332     222333333 5677899999999888887888999


Q ss_pred             EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecc
Q psy2110         346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQ  392 (622)
Q Consensus       346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~  392 (622)
                      +||..+++.+..+..+...+.+++|+++++.|+++ ..++.|..|++.
T Consensus       251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            99998788777777777889999999999966555 456789999886

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.4e-13  Score=129.52  Aligned_cols=213  Identities=11%  Similarity=0.071  Sum_probs=168.5

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      .+++|++++.++.|.+||.++|+.+..+..+..          ..+.+++++|+|++++  +.++.|+.||. +++.+..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN   70 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT----------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence            467899999999999999999998887765431          1256789999999888  34778999998 8999988


Q ss_pred             eccCC-cCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCC-------CCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         232 ISAHM-HPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFP-------SPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       232 ~~~~~-~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      +..+. ..+.++.+.++|+.+++.+. ++.|..+|. +|+.+..+...       .....+.+.+++. ++++...++.+
T Consensus        71 ~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v  148 (276)
T 3no2_A           71 IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEV  148 (276)
T ss_dssp             EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEE
T ss_pred             EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEE
Confidence            88653 57889999999999999887 778888885 68877776522       1344567788887 56777889999


Q ss_pred             EEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC------CCEEEEEEcCCCCE
Q psy2110         303 VLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST------TAIKSIEFARRGNC  376 (622)
Q Consensus       303 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~  376 (622)
                      ..||.. ++.+..+... .....+...++|+.++++..++.|..+|..+++.+.++..+.      ..+.+++..++|..
T Consensus       149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             EEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            999988 7777766654 334567788999999999888899999999999999887432      23788888999998


Q ss_pred             EEEEe
Q psy2110         377 LLVNT  381 (622)
Q Consensus       377 l~~~~  381 (622)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            77764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=3.1e-12  Score=122.63  Aligned_cols=272  Identities=10%  Similarity=0.036  Sum_probs=187.4

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .++++.++|++.++...++.|.+|+.. ++... +.....         ...+..+++.++|+++++...++.|..||..
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~---------~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTP---------DAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSST---------TCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCC---------CCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            699999999988877778999999987 54332 211110         1347889999999988777667889999987


Q ss_pred             CCceEE-EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-Ee-CCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         225 TRGIAK-IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK-YR-FPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       225 ~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                       ++... .+......+.++++.++|+.+++...++.|..+|.. ++.... +. ....+..+++.+++. ++++...++.
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~  168 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNS  168 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCe
Confidence             55432 222244678999999999877777667899999987 655432 22 345788999999887 6666666788


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEEE
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      +..++................+..++++++|..+++....+.|.+|+. +++.... +..+...+.+++++++|+.+++.
T Consensus       169 i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          169 IGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             EEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            999988433222223334456788999999988777767788999998 5554432 33345678999999999866666


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEEC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEK  445 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~  445 (622)
                      ..++.|..|+...           .+..+..........+++++++|++.++..  . .|..++.
T Consensus       248 ~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~--~-~i~~~~p  298 (300)
T 2qc5_A          248 WGANQIGRITNDN-----------TIQEYQLQTENAEPHGITFGKDGSVWFALK--C-KIGKLNL  298 (300)
T ss_dssp             TTTTEEEEECTTS-----------CEEEEECCSTTCCCCCEEECTTSCEEEECS--S-EEEEEEE
T ss_pred             cCCCeEEEECCCC-----------cEEEEECCccCCccceeEeCCCCCEEEEcc--C-ceEEeCC
Confidence            5678899998742           112222111223346789999998555443  4 6777664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=4.3e-12  Score=121.64  Aligned_cols=272  Identities=10%  Similarity=0.018  Sum_probs=186.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE-EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK-IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      .+.++++.++|++.++...++.|.+|+.. ++... .+..+...+.++++.++|+.+++...++.|..||.. ++.. .+
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            46889999999988877778999999987 55433 223334678999999999877776667889999988 6553 33


Q ss_pred             e---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         275 R---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       275 ~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                      .   ....+..+++.+++. ++++...++.+..++...................++++++|+.+++...++.|..++. +
T Consensus        98 ~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            3   236788999999876 5666666778888888733222233334566788999999997776666788999998 5


Q ss_pred             ccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE
Q psy2110         352 LELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV  430 (622)
Q Consensus       352 ~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  430 (622)
                      ++.... ...+...+.+++++++|+.+++....+.|.+|+...           ....+...........++++++|++.
T Consensus       176 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~d~~g~l~  244 (300)
T 2qc5_A          176 GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-----------EISEYDIPTPNARPHAITAGKNSEIW  244 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-----------CEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-----------cEEEEECCCCCCCceEEEECCCCCEE
Confidence            554432 223445788999999998666666677899998741           11112111122344678999999866


Q ss_pred             EEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110         431 CAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       431 ~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~  487 (622)
                      ++... ++.|..|+. +++.... +...... +.++++.++|.+.++... .|..+++
T Consensus       245 v~~~~-~~~i~~~~~-~g~~~~~~~~~~~~~-~~~i~~~~~g~l~v~~~~-~i~~~~p  298 (300)
T 2qc5_A          245 FTEWG-ANQIGRITN-DNTIQEYQLQTENAE-PHGITFGKDGSVWFALKC-KIGKLNL  298 (300)
T ss_dssp             EEETT-TTEEEEECT-TSCEEEEECCSTTCC-CCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred             EeccC-CCeEEEECC-CCcEEEEECCccCCc-cceeEeCCCCCEEEEccC-ceEEeCC
Confidence            55543 688999998 4554322 2222333 889999999986665443 5555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=3.3e-14  Score=154.39  Aligned_cols=234  Identities=12%  Similarity=0.012  Sum_probs=159.9

Q ss_pred             eEEEEcCCCCEEEEeeCC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe--
Q psy2110         145 VTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR--  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--  217 (622)
                      ..++|||||++||.++.+     ..|++||+.+++.+.... ..           ..+..++|+|| +.|+.++.++.  
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~-----------~~~~~~~wspD-~~l~~~~~~~~~~  232 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW-----------VKFSGLAWLGN-DALLYSRFAEPKE  232 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE-----------EESCCCEESTT-SEEEEEECCCC--
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC-----------ceeccEEEECC-CEEEEEEecCccc
Confidence            589999999999887654     469999999987643211 10           01246799999 98988876553  


Q ss_pred             ------------EEEEEcCCCce--EEEec--cCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--c-EEEE
Q psy2110         218 ------------IVLWDFLTRGI--AKIIS--AHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTG--E-CEQK  273 (622)
Q Consensus       218 ------------i~iwd~~~~~~--~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~--~-~~~~  273 (622)
                                  |++|++.++..  ...+.  .+...+.++.|||||++|+..+.++     .|++||+.++  + ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l  312 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL  312 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence                        88999877652  22222  3334588999999999998877543     7999999887  4 3444


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeC---CCcEEEEEecCC--ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPM---RHAAVLVDTDGD--HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      ......+... ++|+++.+++.+..   +..+.+|++.+.  .....+..+...+..+.++ ++.++++...++..++|.
T Consensus       313 ~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          313 IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            4444444444 35888877776643   446899998774  2233334444455566776 566778888888766665


Q ss_pred             CC-CccEEEEEec-CCCCEEEEEEcCCCCEEEEEe----CCCcEEEEeccc
Q psy2110         349 CP-ALELKASFKA-STTAIKSIEFARRGNCLLVNT----GDRLIRVYNHQE  393 (622)
Q Consensus       349 ~~-~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~----~d~~i~i~d~~~  393 (622)
                      +. +++....+.. ....+..+.++|+++.|+...    ..+.|++||+.+
T Consensus       391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            43 4566666664 356788999999988666442    247899999874

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=1.4e-13  Score=149.55  Aligned_cols=274  Identities=12%  Similarity=0.002  Sum_probs=173.2

Q ss_pred             CCCCCEEEEEeCCCe---EEEEEcC-----CCceEEEe------ccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEE
Q psy2110         203 NKRGTLLAVGCNDGR---IVLWDFL-----TRGIAKII------SAHMHPVCSISWSRNGYKIISASTD-----NNVCIW  263 (622)
Q Consensus       203 s~~g~~l~~~~~dg~---i~iwd~~-----~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iw  263 (622)
                      +|+|++++....++.   -.+|...     .+.....+      .+|...+..++|||||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998887665432   4555443     33332222      2233468899999999999887654     359999


Q ss_pred             ECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC-------------cEEEEEecCCc----eeecccCCCCceEEE
Q psy2110         264 DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH-------------AAVLVDTDGDH----QIVPIDEDSDLSIVA  326 (622)
Q Consensus       264 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~i~~~d~~~~~----~~~~~~~~~~~~~~~  326 (622)
                      |+.+++.+........+..++|+|| +.++++.....             .+++|++.+..    .+.....+...+..+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999987654322222357899999 87776654332             48889987654    222223333457889


Q ss_pred             EEeeCCCEEEEEecCC-----eEEEEeCCCc--cEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeccccc
Q psy2110         327 SFDRRGQHVVTGNSKG-----KVLVLSCPAL--ELKASFKASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQEVL  395 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~  395 (622)
                      .|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +|+|+.|++.+.+    +.|.+|++... 
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~-  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS-  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS-
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC-
Confidence            9999999998877543     8999999876  31445555555555553 4899988888763    45999998731 


Q ss_pred             ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC-CCeeEEEEecCCCCceeEEEECCCCCEE
Q psy2110         396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS-VGNLVKILHGTKGELLLDVVWHPVRPII  474 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~v~~sp~~~~l  474 (622)
                            . .....+.... ...+..++|+ ++.++++... ++..+||.+. +++....+..+....+..++++|+++.|
T Consensus       352 ------~-~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l  421 (741)
T 1yr2_A          352 ------T-PRFDTVVPES-KDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA  421 (741)
T ss_dssp             ------S-CEEEEEECCC-SSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCE
T ss_pred             ------c-cccEEEecCC-CCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEE
Confidence                  0 1122222111 1224456666 4555555554 7766665443 4666677765433348899999998855


Q ss_pred             EEE-e----CCcEEEeecCC
Q psy2110         475 ASI-S----SGVVSLWAQNQ  489 (622)
Q Consensus       475 ~s~-~----dg~v~iw~~~~  489 (622)
                      +.. +    .++|++|++.+
T Consensus       422 ~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          422 YLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEETTEEEEEEEEETTT
T ss_pred             EEEEcCCCCCCEEEEEECCC
Confidence            532 2    37899999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.58  E-value=1.4e-12  Score=130.26  Aligned_cols=234  Identities=11%  Similarity=0.036  Sum_probs=169.3

Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC--eEE
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG--RIV  219 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--~i~  219 (622)
                      ..+..++|+++++++++...++.|++||..++..........            ... ++|+++++.|+++..++  .|.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------------~~~-ia~~~~g~~l~~~d~~~~~~I~  197 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------------GGK-PAVTKDKQRVYSIGWEGTHTVY  197 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------------BCB-CEECTTSSEEEEEBSSTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------------CCc-eeEecCCCcEEEEecCCCceEE
Confidence            355799999999988877778999999998775554433211            123 79999999998888765  788


Q ss_pred             EEEcCCCceEEEe----ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----EeCC-CC--eEEEEEeCC
Q psy2110         220 LWDFLTRGIAKII----SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK----YRFP-SP--ILKVQFHPR  288 (622)
Q Consensus       220 iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~--v~~~~~~~~  288 (622)
                      +++...+.....+    ......+.+++++|++..|+.+..++.|+.||..++.....    .... ..  ...++|+|+
T Consensus       198 ~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~  277 (409)
T 3hrp_A          198 VYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV  277 (409)
T ss_dssp             EEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred             EEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC
Confidence            8988766544444    22456678999999555666677788999999987764332    1111 11  129999998


Q ss_pred             CCeEEEEeeCCCcEEEEEecCCceeecccCC---------------CCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCc
Q psy2110         289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDED---------------SDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPAL  352 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  352 (622)
                      +..++++....+.|+.|+.......  +..+               -.....++++++|+++++-. .++.|+.|++.++
T Consensus       278 ~g~lyv~d~~~~~I~~~~~~g~~~~--~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          278 DSNFYMSDQNLSSVYKITPDGECEW--FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TTEEEEEETTTTEEEEECTTCCEEE--EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCEEEEEeCCCCEEEEEecCCCEEE--EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            7778888888889999987654221  1111               23467899999999888877 8899999998777


Q ss_pred             cEEEEEecC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy2110         353 ELKASFKAS---------------TTAIKSIEFARRGNCLLVNTGDRLIRVYNH  391 (622)
Q Consensus       353 ~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~  391 (622)
                      +. ..+.++               -.....++++++|.++++-..++.|+.+++
T Consensus       356 ~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 YV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            64 334333               245789999999887777777888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.57  E-value=3.1e-13  Score=131.17  Aligned_cols=268  Identities=10%  Similarity=-0.013  Sum_probs=183.9

Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCceEEEec
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------NDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~dg~i~iwd~~~~~~~~~~~  233 (622)
                      +|.++|..+++.+..+.....            . .++++|||++++++.          .++.|.+||+.+++.+..+.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~------------P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL------------S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT------------C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCC------------C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            788999999988887765532            2 689999999998886          36889999999999998886


Q ss_pred             cC-------CcCeeEEEEcCCCCEEEEEeC--CCcEEE--EECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         234 AH-------MHPVCSISWSRNGYKIISAST--DNNVCI--WDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       234 ~~-------~~~v~~~~~s~~~~~l~s~~~--d~~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .+       ......++++|||++++++..  ...+.+  +|+.+   +..+.....   +.+.|++...+++.+.++.+
T Consensus       114 v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          114 LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSC
T ss_pred             CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCE
Confidence            43       124568999999999998875  356888  99877   455553332   23457777777777788888


Q ss_pred             EEEEecC----Cceee-----cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc--EEEEEecC----------
Q psy2110         303 VLVDTDG----DHQIV-----PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE--LKASFKAS----------  361 (622)
Q Consensus       303 ~~~d~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----------  361 (622)
                      .+.++..    ...+.     .+.......   . .+++..++..+. +.+.+.|..+..  .+..+...          
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~  262 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFR  262 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEE
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccc
Confidence            8888876    22221     111122222   3 566666666666 899999986543  22222110          


Q ss_pred             CCCEEEEEEcCCCCEEEEEeC---------CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         362 TTAIKSIEFARRGNCLLVNTG---------DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      ......++++|+++.++++..         ++.+.++|+.+         .+.+..+..   ......++|+|||+++++
T Consensus       263 p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t---------~~vv~~i~v---g~~p~gi~~s~Dg~~l~v  330 (368)
T 1mda_H          263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---------GQTSGPISN---GHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---------CCEEECCEE---EEEECEEEECCSSSCEEE
T ss_pred             cCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC---------CeEEEEEEC---CCCcceEEECCCCCEEEE
Confidence            011122689999998887643         23566999883         334444432   223567899999996655


Q ss_pred             eeC-CCCeEEEEECCCCeeEEEEecCCCCceeEEEECC
Q psy2110         433 GSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       433 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  469 (622)
                      +.. .++.|.++|+.+++.++.+.....  ...+++++
T Consensus       331 a~~~~~~~VsVID~~t~kvv~~I~vg~~--P~~i~~~~  366 (368)
T 1mda_H          331 ANSAGTEVLDIYDAASDQDQSSVELDKG--PESLSVQN  366 (368)
T ss_dssp             EEETTTTEEEEEESSSCEEEEECCCCSC--CCEEECCC
T ss_pred             EccCCCCeEEEEECCCCcEEEEEECCCC--CCEEEeec
Confidence            554 488999999999999999986654  56777665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=3.2e-12  Score=123.53  Aligned_cols=242  Identities=13%  Similarity=0.100  Sum_probs=164.7

Q ss_pred             CCcCeeEEEEcCCCCEEEE-------EeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         235 HMHPVCSISWSRNGYKIIS-------ASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s-------~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .-....+++|+++++.+++       ...++.|.+||..+++......     +...+.++++++++..++++.. ...+
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            3345689999999987777       4667899999988887654332     3356889999998333444443 4478


Q ss_pred             EEEEecCCceeec-ccC----CCCceEEEEEeeCCCEEEEEecC---------------CeEEEEeCCCccEEEEEecCC
Q psy2110         303 VLVDTDGDHQIVP-IDE----DSDLSIVASFDRRGQHVVTGNSK---------------GKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       303 ~~~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~  362 (622)
                      .+||.. +..... ...    ....+..++++++|+++++...+               +.|..|+.. ++..... .+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence            889987 443222 111    12346789999999888877655               578888876 5544332 333


Q ss_pred             CCEEEEEEc----CCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeeccccc--eeeeeEEEcCCCCeEEEeeC
Q psy2110         363 TAIKSIEFA----RRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK--TMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       363 ~~i~~~~~s----~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~  435 (622)
                      .....++|+    |+++.|+++ ..++.|.+|++..      .+.......+......  .....++++++|++.++...
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG------PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE------TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC------CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            456889999    999766655 4578999999762      0000111111111111  23456899999988877665


Q ss_pred             CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQN  488 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~  488 (622)
                       ++.|++||..+++.+..+..+... +.+++|+|+++.|+.++  ++.|..|++.
T Consensus       246 -~~~i~~~d~~~g~~~~~~~~~~~~-~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          246 -SSHIEVFGPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             -TTEEEEECTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             -CCEEEEEcCCCCcEeEEEeCCCCC-ceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence             778999999878877777766554 99999999999665554  6789999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=3.2e-12  Score=122.29  Aligned_cols=223  Identities=10%  Similarity=0.163  Sum_probs=158.8

Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+..|+|++. ++++...++.|..|+..++... .+...            ..+.+++++++|+++++ . ++.|.+||.
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------------~~~~~i~~~~dG~l~v~-~-~~~l~~~d~   80 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD------------APVSSVALRQSGGYVAT-I-GTKFCALNW   80 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS------------SCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC------------CceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence            4889999654 5666667889999999876542 22111            24789999999995554 4 568999999


Q ss_pred             CCCceEEEecc----CCcCeeEEEEcCCCCEEEEEeCC---------CcEEEEECC-CCcEEEEEeCCCCeEEEEEeCCC
Q psy2110         224 LTRGIAKIISA----HMHPVCSISWSRNGYKIISASTD---------NNVCIWDVL-TGECEQKYRFPSPILKVQFHPRN  289 (622)
Q Consensus       224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d---------~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~  289 (622)
                      .+++.......    ....++.++++++|+++++....         ..-.+|.+. .++.............++|+|++
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred             CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence            88765433321    22457899999999966654321         223444443 24444444444556889999999


Q ss_pred             CeEEEEeeCCCcEEEEEec--CCc-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         290 DHMFLVCPMRHAAVLVDTD--GDH-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       290 ~~~~~~~~~~~~i~~~d~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      +.++++.+..+.|..|++.  ++.     ....+.........++++++|++.++....+.|..||..+++.+..+..+.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            9888888888999999984  332     122233334567789999999888887778899999999999999998887


Q ss_pred             CCEEEEEEc-CCCCEEEEEeC
Q psy2110         363 TAIKSIEFA-RRGNCLLVNTG  382 (622)
Q Consensus       363 ~~i~~~~~s-~~~~~l~~~~~  382 (622)
                      ..+++++|. |+++.|++++.
T Consensus       241 ~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          241 DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCceEEEEeCCCCCEEEEEcC
Confidence            889999998 88887776654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1.8e-12  Score=126.73  Aligned_cols=266  Identities=12%  Similarity=0.115  Sum_probs=170.7

Q ss_pred             ceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEec-------cCCcCeeEEEEcCCCCEEEEEeC-----CCcEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIIS-------AHMHPVCSISWSRNGYKIISAST-----DNNVC  261 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~-----d~~i~  261 (622)
                      .+..++++++|+++++...  ++.++||.+.+++. ..+.       .|...+.+++++++++++++-..     ++.|.
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            3688999999998888642  34355665555543 3221       34567899999999875555433     47899


Q ss_pred             EEECCCCcEEEEEeCC-------CCeEEEEEeCCCCeEEEEee---CCCcEEEEEecCCceeecccCCCCceE-EEEEee
Q psy2110         262 IWDVLTGECEQKYRFP-------SPILKVQFHPRNDHMFLVCP---MRHAAVLVDTDGDHQIVPIDEDSDLSI-VASFDR  330 (622)
Q Consensus       262 iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~  330 (622)
                      +||+.+++.+..+..+       ..+..+++++++..++++..   .++.+.+||+.++.....+..|..... ...+..
T Consensus        97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            9999999988777643       24688999987766777766   678999999987765554443321110 133456


Q ss_pred             CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecccccccCCCCCCCcceee
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR-LIRVYNHQEVLNAGKDGDPEPIQKL  409 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~  409 (622)
                      +|..+.+...+|.+..|.              ..+..|+|+|+|+.|+++...+ .|+.++...... ...........+
T Consensus       177 ~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~  241 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN-LQLTDAELGSKI  241 (343)
T ss_dssp             TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC-TTCCHHHHHTTC
T ss_pred             CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC-CCCChhhhhcce
Confidence            777777777777765553              2467899999999898887665 455554331110 000000000001


Q ss_pred             eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         410 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       410 ~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ...........++++++|+++++... ++.|.+||..+|+............+.+++|.+++.++++.+
T Consensus       242 ~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            10001112346899999988877775 889999998667754444433223389999999988777765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=1.5e-11  Score=122.65  Aligned_cols=237  Identities=8%  Similarity=-0.039  Sum_probs=158.9

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC-cEEEEEecCCceeec
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH-AAVLVDTDGDHQIVP  315 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~  315 (622)
                      .....++|+++++.+++...++.|++||..+++............ ++|+|+++.++++....+ .+.+++.........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            467899999999877777677899999999888776665444444 999999986655554443 788888876543222


Q ss_pred             c----cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE----EecCCCCE--EEEEEcCC-CCEEEEEeCCC
Q psy2110         316 I----DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS----FKASTTAI--KSIEFARR-GNCLLVNTGDR  384 (622)
Q Consensus       316 ~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i--~~~~~s~~-~~~l~~~~~d~  384 (622)
                      +    .........++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++...++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            2    21345567889999555566677788999999987764322    12222222  39999996 55555556678


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccc-------------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLV-------------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV  451 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~  451 (622)
                      .|+.|+....           +..+.+..             .-.....++++|+|+++++-...++.|+.|++.+|+. 
T Consensus       290 ~I~~~~~~g~-----------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-  357 (409)
T 3hrp_A          290 SVYKITPDGE-----------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-  357 (409)
T ss_dssp             EEEEECTTCC-----------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-
T ss_pred             EEEEEecCCC-----------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-
Confidence            8999987631           11111110             0012357899999996655550388999999888874 


Q ss_pred             EEEecC---------------CCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         452 KILHGT---------------KGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       452 ~~~~~~---------------~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ..+.++               ... +..++++|++.++++-. ++.|+.+++
T Consensus       358 ~~~~g~~~~~g~~~g~~~~~~~~~-P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 STVAGQVDVASQIDGTPLEATFNY-PYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEECTTCBSCCCBSTTTCCBSS-EEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEeCCCCCCCcCCCChhceEeCC-ceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            444443               123 88999999977666665 788887764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=2.1e-11  Score=118.10  Aligned_cols=220  Identities=11%  Similarity=0.005  Sum_probs=155.1

Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      .+..|+|++. ++++...++.|..|+..+++.. .+...            ..+.+++++++|+++++. . ..|.+||.
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~------------~~v~~i~~~~dg~l~v~~-~-~gl~~~d~  116 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP------------FMGSALAKISDSKQLIAS-D-DGLFLRDT  116 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS------------SCEEEEEEEETTEEEEEE-T-TEEEEEET
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECC------------CcceEEEEeCCCeEEEEE-C-CCEEEEEC
Confidence            3788999754 5566667889999998876432 22111            247889999999877654 3 45999998


Q ss_pred             CCCceEEEecc----CCcCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         224 LTRGIAKIISA----HMHPVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .+++.......    ....+..++++++|+++++...      .+.|..++  +++.............++|+|+++.++
T Consensus       117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEE
Confidence            88775433221    1246889999999987665532      24566666  565544333334577899999999888


Q ss_pred             EEeeCCCcEEEEEec--CC-c-----eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         294 LVCPMRHAAVLVDTD--GD-H-----QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~--~~-~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                      ++...++.|.+|+..  ++ .     ....+.........++++++|.++++...++.|.+|+. +++.+..+..+...+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~  273 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT  273 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence            877778899999985  33 2     12222223455678899999988777767788999998 677788888777789


Q ss_pred             EEEEEc-CCCCEEEEEeC
Q psy2110         366 KSIEFA-RRGNCLLVNTG  382 (622)
Q Consensus       366 ~~~~~s-~~~~~l~~~~~  382 (622)
                      ++++|+ ++++.|++++.
T Consensus       274 ~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEecCCCCEEEEEec
Confidence            999998 88887766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=4e-11  Score=114.61  Aligned_cols=232  Identities=9%  Similarity=0.119  Sum_probs=154.5

Q ss_pred             cCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         234 AHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      .+..-..+..|++++. .+++...++.|..||..+++. ..+.....+.+++++++++ ++++.  +..+.+||..++..
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence            3344556889999655 455555678999999988765 4566778899999999998 44433  56899999876643


Q ss_pred             eecccC----CCCceEEEEEeeCCCEEEEEec-----------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         313 IVPIDE----DSDLSIVASFDRRGQHVVTGNS-----------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       313 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      ......    ....+..++++++|+++++...           .+.|+.++.. ++... +.......+.++|+|+++.|
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEE
Confidence            222111    1234678999999997765432           2345555543 33332 33333456899999999977


Q ss_pred             EEE-eCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe
Q psy2110         378 LVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH  455 (622)
Q Consensus       378 ~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~  455 (622)
                      +++ +.++.|.+|++...     .+.....+.+.... .......++++++|++.++... ++.|.+||..+|+.+..+.
T Consensus       164 yv~~~~~~~i~~~~~d~~-----~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQ-----TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             EEEEGGGTEEEEEEECTT-----TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTTCCEEEEEE
T ss_pred             EEecCCCCcEEEEeccCC-----CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCCceEEEEEE
Confidence            655 55788999987410     11111111121111 1123457899999987766664 7889999999999999998


Q ss_pred             cCCCCceeEEEEC-CCCCEEEEEe
Q psy2110         456 GTKGELLLDVVWH-PVRPIIASIS  478 (622)
Q Consensus       456 ~~~~~~v~~v~~s-p~~~~l~s~~  478 (622)
                      .+... +++++|. |+++.|+.++
T Consensus       238 ~p~~~-~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          238 LPVDK-TTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CSSSB-EEEEEEESGGGCEEEEEE
T ss_pred             CCCCC-ceEEEEeCCCCCEEEEEc
Confidence            87655 9999998 8888766554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=1.2e-11  Score=133.08  Aligned_cols=240  Identities=9%  Similarity=0.052  Sum_probs=160.1

Q ss_pred             ceeEEEEcCCCCEEEEecCC----CCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          83 MWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~----~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      .+..++|||||++||.+...    ...|++||+.+|+.+.. +.+.  ..                 ..++|+ |++.|+
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~-----------------~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KF-----------------SGISWL-GNEGFF  189 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ES-----------------CCCEEE-TTTEEE
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--ee-----------------ccEEEe-CCCEEE
Confidence            45578999999999964422    25799999999986543 1111  01                 367899 999999


Q ss_pred             EeeCCCc-------------EEEEecCCccccc--cccccc-CCCcccccccccceEEEEECCCCCEEEEEeC----CCe
Q psy2110         158 VGCNDGR-------------IVLWDFLTRGIAK--IISAHM-HPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DGR  217 (622)
Q Consensus       158 s~~~dg~-------------i~vw~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~  217 (622)
                      .++.+..             |++|++.++....  .+.... ..         .....+.|+|||++|+....    ...
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---------~~~~~~~~SpDg~~l~~~~~~~~~~~~  260 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---------HRYVGATVTEDDRFLLISAANSTSGNR  260 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC---------CSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC---------eEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence            8887743             9999988764321  111111 01         23567899999998866543    358


Q ss_pred             EEEEEcCCCc-eEEEeccCCcCeeEEEEcCCCCEEEEEeC-C---CcEEEEECCCCcE---EEEEeCCCCeEEEEEeCCC
Q psy2110         218 IVLWDFLTRG-IAKIISAHMHPVCSISWSRNGYKIISAST-D---NNVCIWDVLTGEC---EQKYRFPSPILKVQFHPRN  289 (622)
Q Consensus       218 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d---~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~  289 (622)
                      |+++++.++. ....+..+....... |+++|..|+..+. +   +.|..+|+.++..   ...+.+...+.  .|++++
T Consensus       261 i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g  337 (693)
T 3iuj_A          261 LYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGS  337 (693)
T ss_dssp             EEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEET
T ss_pred             EEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEEC
Confidence            9999998764 455666666666555 6677776665544 2   5799999988754   33444555554  899999


Q ss_pred             CeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC----CeEEEEeCCCccE
Q psy2110         290 DHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK----GKVLVLSCPALEL  354 (622)
Q Consensus       290 ~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~  354 (622)
                      +.+++....++  .+++|++.+.............+..+.++++++.++....+    +.++.||+.+++.
T Consensus       338 ~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          338 GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             TEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             CEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            98888777776  57778776543322212233456667778888777665544    7899999987764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.48  E-value=1.5e-08  Score=110.88  Aligned_cols=427  Identities=10%  Similarity=0.060  Sum_probs=254.1

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceec-----------------ccCceEEeecCCceEEEeechhhhhcC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-----------------SRGNCLLVNTGDRLIRVYNHQEVLNAG   64 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~-----------------~~~~~l~~~~~d~~i~~w~~~~~~~~~   64 (622)
                      ..|.++...++|.+.+. +.+| +..||..+.++..                 .....+.+++.. -+..|+......  
T Consensus        88 n~I~~i~~d~~g~lWig-T~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~~-gl~~~~~~~~~~--  162 (795)
T 4a2l_A           88 DISRIVKTDSQGRVWIG-TRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPE-GLIMFDIKESKF--  162 (795)
T ss_dssp             SCEEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEETT-EEEEEETTTTEE--
T ss_pred             cceeEEEECCCCCEEEE-eCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEECC-ceEEEECCCCEE--
Confidence            46889999999976654 4445 7888876543220                 112223334443 366676543111  


Q ss_pred             CCCCCccchhhhhhccccc-eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEe-ccCcceeEEEEeecCcccccc
Q psy2110          65 KDGDPEPIQKLQDLVNKTM-WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVEFDGALDCIS  142 (622)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~-~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  142 (622)
                              ..+........ +.++...+++...+ ++.. +.|..|+..+++...... .+...                
T Consensus       163 --------~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~-~Gl~~~~~~~~~~~~~~~~~~~~~----------------  216 (795)
T 4a2l_A          163 --------IDDSFSTAMHKTIASTLYRQGDQIYI-GTST-DGLYTYSITQKTFEKVIPILGTKQ----------------  216 (795)
T ss_dssp             --------ECSSSCHHHHTCCEEEEEEETTEEEE-EESS-SCEEEEETTTCCEEECC----CCC----------------
T ss_pred             --------EeccCCCCCCcceEEEEECCCCCEEE-EECC-CCEEEEeCCCCeEEEecCCCCCCe----------------
Confidence                    00000000112 56788888887665 4432 468899987766543211 11122                


Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                       |.++...+++.+.+ |+.++-+.+|+..+++..........+   ..+ ....|.++...++|.+.+ |+.+ -|.+|+
T Consensus       217 -i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~---~~l-~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~  288 (795)
T 4a2l_A          217 -IQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNP---KSI-SSNYIRSLAMDSQNRLWI-GTFN-DLNIYH  288 (795)
T ss_dssp             -EEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCT---TSC-SCSBEEEEEECTTSCEEE-EESS-CEEEEE
T ss_pred             -eEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCc---ccc-CCCeEEEEEEcCCCCEEE-EeCC-hhheEc
Confidence             35777777776554 444445888998765433221111000   000 113588999999888654 4445 588999


Q ss_pred             cCCCceEEEecc-------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEEEeCC
Q psy2110         223 FLTRGIAKIISA-------HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQFHPR  288 (622)
Q Consensus       223 ~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~  288 (622)
                      ..++........       ....|.++...++|. |..|+.++-|..|+..++.......       ....|.++...++
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~  367 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKD  367 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTT
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCC
Confidence            877654433211       235799999998886 5667777779999876654332211       1345888888887


Q ss_pred             CCeEEEEeeCCCcEEEEEecCCceeeccc--------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-
Q psy2110         289 NDHMFLVCPMRHAAVLVDTDGDHQIVPID--------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-  359 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  359 (622)
                      +.  +.+|+.++.+..++..+........        .....|.++..+++|+.|.+|+.++-|..||..+++...-.. 
T Consensus       368 g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          368 KN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             SC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             CC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            76  4556777778888877653322111        124568888888888856677776779999988776443221 


Q ss_pred             ---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-----cccceeeeeEEEcCCCCeEE
Q psy2110         360 ---ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----LVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       360 ---~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~spdg~~l~  431 (622)
                         .....|.++...++|+..+ ++. +-|.+|+....          ....+..     ......+.++...++|++.+
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQR----------SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTT----------EEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCC----------eEEEccccccccccCCceEEEEEECCCCCEEE
Confidence               2346799999998888544 444 45888887631          1111111     11224466788888888665


Q ss_pred             EeeCCCCeEEEEECCCCeeEEEEec------CCCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         432 AGSARQHALYIWEKSVGNLVKILHG------TKGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      ...  +| |+.|+..+++.  .+..      -....|.++...++|.+.++... -+..|+..
T Consensus       514 gt~--~G-l~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~  570 (795)
T 4a2l_A          514 GGE--EG-LSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK  570 (795)
T ss_dssp             EES--SC-EEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             EeC--Cc-eEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence            443  33 88999877765  3321      11223899999999986655444 57777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.47  E-value=2.8e-11  Score=128.78  Aligned_cols=308  Identities=13%  Similarity=0.114  Sum_probs=196.1

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..|++++.++.|..+|..+|+.+-.+.............+......+++  ++..|++++.++.|..+|..+++.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            45677777788999999999987766654322110000000000011222  3567888889999999999999999887


Q ss_pred             ccC-C----cCee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe--------------------
Q psy2110         233 SAH-M----HPVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI--------------------  280 (622)
Q Consensus       233 ~~~-~----~~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v--------------------  280 (622)
                      ..+ .    ..+. ....  .+..++.++.      ++.|+.+|..+|+.+..+......                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            754 2    1121 1111  2345555543      689999999999998887632111                    


Q ss_pred             -------------EEEEEeCCCCeEEEEeeCC------------------CcEEEEEecCCceeecccCCC---------
Q psy2110         281 -------------LKVQFHPRNDHMFLVCPMR------------------HAAVLVDTDGDHQIVPIDEDS---------  320 (622)
Q Consensus       281 -------------~~~~~~~~~~~~~~~~~~~------------------~~i~~~d~~~~~~~~~~~~~~---------  320 (622)
                                   ..++++|++..+++.....                  +.+..+|..+++.+..+....         
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                         2467888877555443221                  248889999888776654321         


Q ss_pred             CceEEEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEecCCC-----------CE---------------------
Q psy2110         321 DLSIVASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFKASTT-----------AI---------------------  365 (622)
Q Consensus       321 ~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------~i---------------------  365 (622)
                      .....+....+|   ..++.++.+|.++++|..+++++..+.....           .+                     
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            112233344577   6889999999999999999999877653211           11                     


Q ss_pred             ---EEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEecccccccCC
Q psy2110         366 ---KSIEFARRGNCLLVNTGD-------------------------------------------RLIRVYNHQEVLNAGK  399 (622)
Q Consensus       366 ---~~~~~s~~~~~l~~~~~d-------------------------------------------~~i~i~d~~~~~~~~~  399 (622)
                         ..++++|++.++++...+                                           +.|..||+.+      
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t------  466 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA------  466 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT------
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC------
Confidence               156889998888776532                                           5677777762      


Q ss_pred             CCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110         400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  477 (622)
                         .+.+-.+...   .......++.++..++.++. ++.+++||..+|+.+..+....+....-+.|.++|+.++..
T Consensus       467 ---G~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          467 ---QKAAWSVEHV---SPWNGGTLTTAGNVVFQGTA-DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             ---TEEEEEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ---CcEEeecCCC---CCCcCcceEeCCCEEEEECC-CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence               2222222211   11223356678888888876 99999999999999999886554324456777888754443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=5.2e-12  Score=135.74  Aligned_cols=234  Identities=8%  Similarity=0.024  Sum_probs=157.9

Q ss_pred             ceeEEEEcCCCCEEEEe-----eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-
Q psy2110         143 LAVTCAFNKRGTLLAVG-----CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-  216 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-  216 (622)
                      .+..++|||||++||.+     +....|++||+.+++.+.... ..           .....++|+ ||+.|+.++.+. 
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~-----------~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD-----------VKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE-----------EESCCCEEE-TTTEEEEEESSCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC-----------ceeccEEEe-CCCEEEEEEecCc
Confidence            34688999999998843     333579999999987543211 00           002456899 999999888774 


Q ss_pred             ------------eEEEEEcCCCce----EEEecc-CCcCeeEEEEcCCCCEEEEEeC----CCcEEEEECCCC--cEEEE
Q psy2110         217 ------------RIVLWDFLTRGI----AKIISA-HMHPVCSISWSRNGYKIISAST----DNNVCIWDVLTG--ECEQK  273 (622)
Q Consensus       217 ------------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~  273 (622)
                                  .|++|++.++..    +..... |.....++.|+|||++|+....    .+.|+++|+.++  +....
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                        399999987653    222233 4455788999999998865443    248999999876  33433


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCC---CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC---eEE
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMR---HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG---KVL  345 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~  345 (622)
                      .......... +++++..+++.+..+   ..|..+++.+...  ...+..+...+.  .|++++++|+....++   .|+
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            3344444444 777788777776554   5788888876543  233444444444  8999999887765543   689


Q ss_pred             EEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeccc
Q psy2110         346 VLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGD----RLIRVYNHQE  393 (622)
Q Consensus       346 i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d----~~i~i~d~~~  393 (622)
                      +|++..+ ....+. .....+..+.++++++.|+....+    +.|+.||+..
T Consensus       354 ~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          354 QFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            9998754 444444 344567788888888877766544    7899999863

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.45  E-value=2.3e-10  Score=113.56  Aligned_cols=304  Identities=9%  Similarity=-0.001  Sum_probs=190.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA-VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      +..|++++.++.|..+|..+|+.+-.............  ....+ ..+..  ++..+++++.++.|..+|..+++.+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSK--EPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSC--CCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccc--cCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            56788888889999999999887655543221100000  00111 12222  356788888899999999999998877


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE------EEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPIL------KVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      ..............  +..++.++.++.|..+|..+++.+..+....++.      .....  +. .++++..++.+..+
T Consensus       129 ~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          129 TKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAV  203 (376)
T ss_dssp             EECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEE
T ss_pred             EeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEE
Confidence            76543322222232  4478888889999999999999888877544332      22222  22 46677788999999


Q ss_pred             EecCCceeecccCCCCc----------e-EEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110         306 DTDGDHQIVPIDEDSDL----------S-IVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       306 d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  374 (622)
                      |..+++.+.........          + ....  ..+..+++++.++.+..+|..+++.+.....  .....+..  ++
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~  277 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG  277 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence            99888766554432110          0 0111  1356778888899999999999998876553  23444444  35


Q ss_pred             CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      ..+++++.++.|..+|..+.         +.......... ........  .+..|++++. +|.|+++|..+|+.+...
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG---------~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGG---------VTLWTQSDLLH-RLLTSPVL--YNGNLVVGDS-EGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTC---------CEEEEECTTTT-SCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCC---------cEEEeecccCC-CcccCCEE--ECCEEEEEeC-CCeEEEEECCCCcEEEEE
Confidence            67888888999999998732         22222221111 11111222  3567777776 889999999999988877


Q ss_pred             ecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         455 HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       455 ~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      ..........+...  +..|+.++ +|.|+.|+
T Consensus       345 ~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          345 KVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             ecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            65333312222222  44566666 89998886

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.45  E-value=4.4e-08  Score=107.20  Aligned_cols=436  Identities=10%  Similarity=0.105  Sum_probs=255.9

Q ss_pred             ceEEEEccCCcEEEeccCCCeEEEEecccccee---------------cccCceEEeecCCceEEEeechhhhhcCCCCC
Q psy2110           4 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD   68 (622)
Q Consensus         4 V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~   68 (622)
                      |.++...++|++.+ |+.++-|..|+....++.               ......+.+++.++-+..|+............
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~  253 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHS  253 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecC
Confidence            78888888987766 444445778886554322               11123344444333366677643211100000


Q ss_pred             CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      ...    ........+.++...++|...+.. .  +-|.+|+..+++...........-          .-....|.++.
T Consensus       254 ~~~----~~~l~~~~i~~i~~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~----------~l~~~~i~~i~  316 (795)
T 4a2l_A          254 PSN----PKSISSNYIRSLAMDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENG----------SLSQRSVRSIF  316 (795)
T ss_dssp             TTC----TTSCSCSBEEEEEECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTT----------SCSSSCEEEEE
T ss_pred             CCC----ccccCCCeEEEEEEcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCC----------CCCCCcEEEEE
Confidence            000    001123457788888888766544 3  258899988776543322111000          00112347888


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      ..++|. |..|+.++-|..|+..++...........    ..+ ....|.++...++|++. .|+.++-|..|+..++..
T Consensus       317 ~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~l-~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          317 MDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYK----NSL-SDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             ECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTS----SSC-SCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCE
T ss_pred             EeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCC----CCC-CCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcE
Confidence            888886 55566777799998766543221111100    011 12358899999988754 577777799999877655


Q ss_pred             EEEecc--------CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-----CCCCeEEEEEeCCCCeEEEE
Q psy2110         229 AKIISA--------HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       229 ~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~  295 (622)
                      ......        ....|.++...++|+.|..|+.++-|.+||..+++......     ....|.++...+++. +. .
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lw-i  467 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LW-L  467 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EE-E
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EE-E
Confidence            433211        23578999998888857777777779999998877544322     235688888888776 33 3


Q ss_pred             eeCCCcEEEEEecCCceeeccc------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-------cCC
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPID------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-------AST  362 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~  362 (622)
                      ++. +.+.+++..+........      .....+.++..+++|...+.. ..| +..|+..+++.  .+.       ...
T Consensus       468 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~--~~~~~~~~~~l~~  542 (795)
T 4a2l_A          468 GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EEG-LSVFKQEGLDI--QKASILPVSNVTK  542 (795)
T ss_dssp             EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SSC-EEEEEEETTEE--EECCCSCSCGGGG
T ss_pred             Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CCc-eEEEeCCCCeE--EEecCCCCCCCCC
Confidence            334 458888877654322211      123567888888888766654 444 88899877655  332       234


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         363 TAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       363 ~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                      ..|.++...++|+..+ ++.. -|..||...          ..+..+..  ......+.++...++|++.+++.  . -|
T Consensus       543 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~-Gl  607 (795)
T 4a2l_A          543 LFTNCIYEASNGIIWV-GTRE-GFYCFNEKD----------KQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--R-GI  607 (795)
T ss_dssp             SCEEEEEECTTSCEEE-EESS-CEEEEETTT----------TEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--T-EE
T ss_pred             CeeEEEEECCCCCEEE-EeCC-CceeECCCC----------CcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--C-ce
Confidence            5789999999998554 4444 577888652          12222211  11223456778888888666553  4 48


Q ss_pred             EEEECCCCeeEEEEecCCC---Cce--eEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         441 YIWEKSVGNLVKILHGTKG---ELL--LDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~~~---~~v--~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      ..|+..+++ +..+....+   ..+  .++...++|.+.+.+.+|. ..+++.
T Consensus       608 ~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~~~p~  658 (795)
T 4a2l_A          608 SCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQMYFGGINGI-TTFRPE  658 (795)
T ss_dssp             EEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTEE-EEECGG
T ss_pred             EEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeEEEecCCce-EEEcHH
Confidence            889988765 344443322   112  4667788888777665774 444543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.44  E-value=7.1e-11  Score=113.34  Aligned_cols=240  Identities=11%  Similarity=0.078  Sum_probs=157.3

Q ss_pred             eEEEeccCCcCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         228 IAKIISAHMHPVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       228 ~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                      .+..+..+.....++.|+++|+ .+++...++.|..|+. +++..........+..++++++++ ++++...++.|.+|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence            3444555556678899999998 4556666789999998 555433334667789999999987 555555567888888


Q ss_pred             ecCCceeecc--cC-CCCceEEEEEeeCCCEEEE----Eec-------------CCeEEEEeCCCccEEEEEecCCCCEE
Q psy2110         307 TDGDHQIVPI--DE-DSDLSIVASFDRRGQHVVT----GNS-------------KGKVLVLSCPALELKASFKASTTAIK  366 (622)
Q Consensus       307 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~  366 (622)
                      ..........  .. ....+..++++++|+++++    |..             .+.|..||..+++.....  .....+
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence            7532111110  11 1123557899999998886    332             356888888767654433  335568


Q ss_pred             EEEEcCCCCEEEEEeCC------CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeE
Q psy2110         367 SIEFARRGNCLLVNTGD------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHAL  440 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i  440 (622)
                      .++|+|+++.|+++...      +.|++|++....       ......+... .......++++++|++.+ +.. + .|
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-------l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~-~-gv  260 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-------LHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSG-T-GV  260 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-------EEEEEEEECC-SSSCCCSEEECTTSCEEE-CCS-S-EE
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-------ccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecC-C-cE
Confidence            89999999988887665      689999986310       0001111111 111224579999999544 443 4 49


Q ss_pred             EEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEeCCcEEEe
Q psy2110         441 YIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLW  485 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~dg~v~iw  485 (622)
                      ++|+. .++.+..+..+. . +.+++|+|+++.|+.++.+.++.+
T Consensus       261 ~~~~~-~g~~~~~~~~~~-~-~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          261 CVFDS-DGQLLGHIPTPG-T-ASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEECT-TSCEEEEEECSS-C-CCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEECC-CCCEEEEEECCC-c-eeEEEEeCCCCEEEEEcCCeEEEE
Confidence            99998 577788887665 3 899999999998887774444433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.44  E-value=5.9e-11  Score=126.54  Aligned_cols=308  Identities=14%  Similarity=0.153  Sum_probs=192.0

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..|++++.++.|..+|..+|+.+-.+.............|......+++  .+..+++++.++.|..+|..+|+.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            55777777889999999999988776654322111000000000011122  3567888889999999999999998777


Q ss_pred             ccC--CcCeeEEEEcC---CCCEEEEEe------CCCcEEEEECCCCcEEEEEeC-C-CC--------------------
Q psy2110         233 SAH--MHPVCSISWSR---NGYKIISAS------TDNNVCIWDVLTGECEQKYRF-P-SP--------------------  279 (622)
Q Consensus       233 ~~~--~~~v~~~~~s~---~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-~-~~--------------------  279 (622)
                      ...  ......+..+|   ++ .++.++      .++.|+.||..+|+.+..+.. + .+                    
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            642  11111111122   44 444443      368999999999999877752 1 00                    


Q ss_pred             ----------eEEEEEeCCCCeEEEEeeCCC-------------------cEEEEEecCCceeecccCC--C-------C
Q psy2110         280 ----------ILKVQFHPRNDHMFLVCPMRH-------------------AAVLVDTDGDHQIVPIDED--S-------D  321 (622)
Q Consensus       280 ----------v~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~--~-------~  321 (622)
                                ...+++.|+... ++++..++                   .+..+|..+++.+..+...  .       .
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeecCCCCccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                      124678887764 45555443                   4899999998887665432  1       1


Q ss_pred             ceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC-----------------------------------
Q psy2110         322 LSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT-----------------------------------  363 (622)
Q Consensus       322 ~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------------------------  363 (622)
                      .........+|+   .++.++.+|.++++|..+|+++........                                   
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence            122222334565   788899999999999999998854432110                                   


Q ss_pred             ----CEEEEEEcCCCCEEEEEeCC---------------------------------------------CcEEEEecccc
Q psy2110         364 ----AIKSIEFARRGNCLLVNTGD---------------------------------------------RLIRVYNHQEV  394 (622)
Q Consensus       364 ----~i~~~~~s~~~~~l~~~~~d---------------------------------------------~~i~i~d~~~~  394 (622)
                          .-..++++|+..++++.+.+                                             +.|+.||+.+ 
T Consensus       386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-  464 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-  464 (689)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-
T ss_pred             ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-
Confidence                01136888988887776433                                             4566666652 


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-E
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-I  473 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~  473 (622)
                              .+.+-.+...   ..+....++..|.+|+.++. |+.|+.||.++|+.+..++.+.+....-+.|..+|+ +
T Consensus       465 --------G~~~W~~~~~---~~~~~g~~~tagglvf~gt~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          465 --------QQAAWEVPYV---TIFNGGTLSTAGNLVFEGSA-DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             --------TEEEEEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             --------CCeEeEccCC---CCccCccceECCCEEEEECC-CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence                    2222222211   11122356667888888886 999999999999999988866543234577888887 4


Q ss_pred             EEEE
Q psy2110         474 IASI  477 (622)
Q Consensus       474 l~s~  477 (622)
                      +++.
T Consensus       533 v~~~  536 (689)
T 1yiq_A          533 VTFM  536 (689)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.44  E-value=7.2e-10  Score=109.90  Aligned_cols=305  Identities=8%  Similarity=0.004  Sum_probs=187.0

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                      +..|++++.+ +.|..+|..+|+.+...........      .  ..+... .......++..+++++.++.|..+|..+
T Consensus        53 ~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~------~--~~~~~~-~~~~~~~~~~~v~v~~~~g~l~a~d~~t  122 (376)
T 3q7m_A           53 DNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGW------F--SKEPAL-LSGGVTVSGGHVYIGSEKAQVYALNTSD  122 (376)
T ss_dssp             TTEEEEECTT-SEEEEEETTTCCEEEEEECCC---C------C--SCCCCC-EEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEcCC-CeEEEEEccCCceeeeecCcccccc------c--cccCcc-cccCceEeCCEEEEEcCCCEEEEEECCC
Confidence            5566666654 8999999999999877665321100      0  000000 0111222456788888899999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-----eEEEEcCC
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-----CSISWSRN  247 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~  247 (622)
                      |+.+.........           .......  +..+++++.++.|..+|..+++.+..........     ......  
T Consensus       123 G~~~W~~~~~~~~-----------~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--  187 (376)
T 3q7m_A          123 GTVAWQTKVAGEA-----------LSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--  187 (376)
T ss_dssp             CCEEEEEECSSCC-----------CSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--
T ss_pred             CCEEEEEeCCCce-----------EcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--
Confidence            9876555433211           0001111  4577888889999999999999887766432211     122222  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCe------------EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec
Q psy2110         248 GYKIISASTDNNVCIWDVLTGECEQKYRFPSPI------------LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP  315 (622)
Q Consensus       248 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v------------~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  315 (622)
                      +..++.+..++.|..+|..+++.+.......+.            ......  +. .+++++.++.+..+|..+++.+..
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~-~v~~~~~~g~l~~~d~~tG~~~w~  264 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NG-VVFALAYNGNLTALDLRSGQIMWK  264 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TT-EEEEECTTSCEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CC-EEEEEecCcEEEEEECCCCcEEee
Confidence            446788888999999999999988777643211            111111  22 466667788999999988877655


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                      ....  ....+.  .++..+++++.++.+..+|..+++.+..... ....+..+..  .+..|++++.+|.|+++|..+ 
T Consensus       265 ~~~~--~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t-  337 (376)
T 3q7m_A          265 RELG--SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED-  337 (376)
T ss_dssp             ECCC--CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT-
T ss_pred             ccCC--CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC-
Confidence            4432  223333  3467888888999999999999998877662 2222333333  246788899999999999873 


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                              .+.+........ ........  .+..|+.++. +|.|+.|+
T Consensus       338 --------G~~~~~~~~~~~-~~~~~~~~--~~~~l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          338 --------GRFVAQQKVDSS-GFQTEPVA--ADGKLLIQAK-DGTVYSIT  375 (376)
T ss_dssp             --------CCEEEEEECCTT-CBCSCCEE--ETTEEEEEBT-TSCEEEEE
T ss_pred             --------CcEEEEEecCCC-cceeCCEE--ECCEEEEEeC-CCEEEEEe
Confidence                    223322222111 11111122  2456667775 78898886

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.44  E-value=7.5e-12  Score=125.98  Aligned_cols=312  Identities=9%  Similarity=-0.004  Sum_probs=201.4

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCc---------------------------cc--ccccccceEEEEECC-
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEF---------------------------DG--ALDCISLAVTCAFNK-  204 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---------------------------~~--~~~~~~~v~~~~~s~-  204 (622)
                      .+.+|+..|.++|+-+.+++.+..+........                           .+  .+. .........|. 
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~-~gd~hh~~~s~t   95 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD-NGDLHHVHMSFT   95 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC-CCCBCCEEEEEE
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc-cCCCCccccCCC
Confidence            356788899999998888776655433211100                           01  010 01111234444 


Q ss_pred             ----CCCEEEEEeC-CCeEEEEEcCCCceEEEecc-CCcCeeEEEE-c-CCCCEEEEEeC------------------CC
Q psy2110         205 ----RGTLLAVGCN-DGRIVLWDFLTRGIAKIISA-HMHPVCSISW-S-RNGYKIISAST------------------DN  258 (622)
Q Consensus       205 ----~g~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~-s-~~~~~l~s~~~------------------d~  258 (622)
                          ||++|++... ++.|.+.|+.+.++.+.+.- .......+++ + |+++++++++.                  ++
T Consensus        96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence                8888877665 56799999999998875442 2245788888 5 89999988852                  35


Q ss_pred             cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC--------------cEEEEEecCCceeecccCCCCceE
Q psy2110         259 NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH--------------AAVLVDTDGDHQIVPIDEDSDLSI  324 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------~i~~~d~~~~~~~~~~~~~~~~~~  324 (622)
                      .+.++|..+.+...++........++++|+++++++++....              .+.+.+.....             
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-------------  242 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-------------  242 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-------------
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-------------
Confidence            799999999999999886557788999999998777775542              24444432211             


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEeCCC--ccE-EEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCC
Q psy2110         325 VASFDRRGQHVVTGNSKGKVLVLSCPA--LEL-KASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKD  400 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~  400 (622)
                        .+.++|++...    +.|.+.|.++  ++. +..+... ....++.++|||+++++++. +.+|.++|+....... .
T Consensus       243 --~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~-~  314 (595)
T 1fwx_A          243 --KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-Y  314 (595)
T ss_dssp             --HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-H
T ss_pred             --EeccCCCeeEE----CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-c
Confidence              12244554443    4599999998  555 5555533 34468999999999888764 7889999998532100 0


Q ss_pred             CCCCcce-eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC----------CeeEEEEecCCCCc----eeEE
Q psy2110         401 GDPEPIQ-KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV----------GNLVKILHGTKGEL----LLDV  465 (622)
Q Consensus       401 ~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~----v~~v  465 (622)
                      +...+-. ..........-..++|+|+| ++.+...-+++|.+||+..          .+.+..+..|....    -..+
T Consensus       315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~  393 (595)
T 1fwx_A          315 ENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGE  393 (595)
T ss_dssp             SCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTT
T ss_pred             cccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccce
Confidence            0000000 11111222333567999999 7777766699999999877          56777777665310    1223


Q ss_pred             EECCCCCEEEEEe--C-CcE-----------EEeecCC
Q psy2110         466 VWHPVRPIIASIS--S-GVV-----------SLWAQNQ  489 (622)
Q Consensus       466 ~~sp~~~~l~s~~--d-g~v-----------~iw~~~~  489 (622)
                      ..+|||++|+++.  . ..+           +++++.+
T Consensus       394 t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          394 TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            5689999999886  3 334           8888864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=4.6e-12  Score=122.98  Aligned_cols=252  Identities=10%  Similarity=-0.053  Sum_probs=169.6

Q ss_pred             eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEECCCCcEEEEEeCC--------C
Q psy2110         217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDVLTGECEQKYRFP--------S  278 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~--------~  278 (622)
                      .|.++|..+++.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+..+..+        .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999998866566  799999999998886          3678999999999999998743        3


Q ss_pred             CeEEEEEeCCCCeEEEEeeC-CCcEEE--EEecCCceeecccCCCCceEEEEEeeCC-CEEEEEecCCeEEEEeCCC---
Q psy2110         279 PILKVQFHPRNDHMFLVCPM-RHAAVL--VDTDGDHQIVPIDEDSDLSIVASFDRRG-QHVVTGNSKGKVLVLSCPA---  351 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~-~~~i~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~---  351 (622)
                      ....++++|++++++++... ...+.+  +|..+   +..+.....    ..+.|++ ..+++.+.||.+.+.++.+   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            46789999999987777654 466777  78766   222221111    1123444 3445566788888888876   


Q ss_pred             --ccEEEE----EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc------c--ccee
Q psy2110         352 --LELKAS----FKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL------V--NKTM  417 (622)
Q Consensus       352 --~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~--~~~~  417 (622)
                        ++....    +.....+.   . ++++..++..+. +.|.+.|....       ....+..+...      .  ....
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~-------~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA-------GATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS-------CCEEECCCCSSCTHHHHTTEEECS
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC-------cceEEEEEEeccccccccccccCc
Confidence              433211    11122333   3 666676777766 89999998621       10111111100      0  0011


Q ss_pred             eeeEEEcCCCCeEEEeeC---C-----CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe--CCcEEEee
Q psy2110         418 WKKCCFSGDGEYVCAGSA---R-----QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS--SGVVSLWA  486 (622)
Q Consensus       418 ~~~~~~spdg~~l~~~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~--dg~v~iw~  486 (622)
                      ...++|+|||+.++.+..   .     +..+.++|+.+++.++.+.....  ...++|+|+++ ++++..  ++.|.++|
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~--p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD--SDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE--ECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC--cceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            122689999998887543   1     13466999999999988876542  88999999997 455554  79999999


Q ss_pred             cCCcc
Q psy2110         487 QNQVE  491 (622)
Q Consensus       487 ~~~~~  491 (622)
                      +.+.+
T Consensus       344 ~~t~k  348 (368)
T 1mda_H          344 AASDQ  348 (368)
T ss_dssp             SSSCE
T ss_pred             CCCCc
Confidence            97543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.43  E-value=5.1e-11  Score=114.35  Aligned_cols=222  Identities=11%  Similarity=0.046  Sum_probs=151.4

Q ss_pred             eEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      ....|+|+++ ++++...++.|..|+. +++ ...+....           ..+..++++++|+++++...++.|.+|+.
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~-----------~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDAT-----------AFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESC-----------SCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCC-----------CccceeeECCCCCEEEEECCCCEEEEECC
Confidence            4889999998 5667777889999987 443 22232221           24688999999997766666688999997


Q ss_pred             CCCceEEEecc----CCcCeeEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110         224 LTRGIAKIISA----HMHPVCSISWSRNGYKIIS----AST-------------DNNVCIWDVLTGECEQKYRFPSPILK  282 (622)
Q Consensus       224 ~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~~v~~  282 (622)
                      . ++.......    ....++.++++++|+.+++    |..             .+.|..||..+++..... .......
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g  192 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG  192 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence            5 543322211    1134678999999997776    321             246888888777665544 3445678


Q ss_pred             EEEeCCCCeEEEEeeC-----CCcEEEEEecCCce---eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         283 VQFHPRNDHMFLVCPM-----RHAAVLVDTDGDHQ---IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       283 ~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      ++|+|+++.++++...     .+.|..|++.....   .............++++++|++.+ ++.+ .|.+|+. +++.
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~  269 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQL  269 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCE
Confidence            9999999877666554     37899999875431   011111233345688999998544 4444 4999997 5777


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         355 KASFKASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       355 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                      +..+..+. .+.+++|+++++.|.+++.++.
T Consensus       270 ~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          270 LGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             EEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             EEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            77777665 5889999999998888887643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=8.2e-12  Score=122.06  Aligned_cols=276  Identities=12%  Similarity=0.069  Sum_probs=174.0

Q ss_pred             ceeEEEEcCCCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          83 MWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      .+..++++|+|+.+++... +++.++||.+.+++. ..+.....          ........+..++++++++++++-..
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v~D~g   86 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG----------NAIITFDTVLGIKSDGNGIVWMLDNG   86 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS----------SCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc----------CcccceeEeeEEEEcCCCcEEEEcCC
Confidence            4567999999999888532 223356666654542 22221100          00112234579999999986665443


Q ss_pred             -----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEe---CCCeEEEEEcCCCceEEEe
Q psy2110         162 -----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGC---NDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       162 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~---~dg~i~iwd~~~~~~~~~~  232 (622)
                           ++.|.+||+.+++.+..+.......     .....+..+++++++..++ +..   .++.|.+||+.+++..+.+
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTS-----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhc-----ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence                 5789999999887666554321110     0112357889998655554 444   5789999999988877777


Q ss_pred             ccCCcCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC--
Q psy2110         233 SAHMHPVC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG--  309 (622)
Q Consensus       233 ~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--  309 (622)
                      .+|..... ...+..+|..+.+.+.++.++.|.             ..+..++|+|+++.++++......++.++...  
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~  228 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS  228 (343)
T ss_dssp             TTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT
T ss_pred             cCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc
Confidence            65432111 134455777777777888876663             24678999999987766666555666666421  


Q ss_pred             -Cc----e-ee--cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEE
Q psy2110         310 -DH----Q-IV--PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       310 -~~----~-~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~  380 (622)
                       ..    . ..  ....+......++++++|.++++...++.|.+||..+++....... +.....+++|.++++++++.
T Consensus       229 ~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          229 NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence             10    0 00  0111223455689999999999988899999999856664433332 24568899999999877777


Q ss_pred             eCCCcEE
Q psy2110         381 TGDRLIR  387 (622)
Q Consensus       381 ~~d~~i~  387 (622)
                      +..+.+.
T Consensus       309 ~~~~~~~  315 (343)
T 2qe8_A          309 NQLHHSA  315 (343)
T ss_dssp             CCGGGSG
T ss_pred             Ccccccc
Confidence            6554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.43  E-value=2.2e-10  Score=121.83  Aligned_cols=312  Identities=13%  Similarity=0.099  Sum_probs=199.0

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccc-cceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI-SLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  171 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~  171 (622)
                      +..|++++.+ +.|+.+|..+|+.+..+........       ....|. .....+++  ++..|++++.|+.|..+|..
T Consensus        77 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~-------~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~  146 (677)
T 1kb0_A           77 DGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRST-------GFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAA  146 (677)
T ss_dssp             TTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGG-------GGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEECCC-CeEEEEECCCCcEEEEEcCCCCccc-------cccccccCCCCCceE--ECCEEEEEcCCCEEEEEECC
Confidence            4455555544 8999999999999988875432110       000000 00012233  46688888999999999999


Q ss_pred             CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110         172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP-------  238 (622)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------  238 (622)
                      +|+.+-.+...........+.. ..+    .  .+..+++++.      ++.|+.+|..+++.+..+......       
T Consensus       147 tG~~~W~~~~~~~~~~~~~~~~-~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~  219 (677)
T 1kb0_A          147 TGKEVWHQNTFEGQKGSLTITG-APR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFED  219 (677)
T ss_dssp             TCCEEEEEETTTTCCSSCBCCS-CCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             CCCEEeeecCCcCcCcCccccc-CcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccc
Confidence            9988776654311000000000 011    1  1345555543      689999999999998777532211       


Q ss_pred             -------------------------eeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEE
Q psy2110         239 -------------------------VCSISWSRNGYKIISASTDN-------------------NVCIWDVLTGECEQKY  274 (622)
Q Consensus       239 -------------------------v~~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~  274 (622)
                                               ...+++++++..++.+..++                   .|..+|..+|+.+..+
T Consensus       220 ~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~  299 (677)
T 1kb0_A          220 ESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY  299 (677)
T ss_dssp             HHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             cccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence                                     13578888888888887654                   4999999999998887


Q ss_pred             eCC----------CCeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC-----------Cce--------
Q psy2110         275 RFP----------SPILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS-----------DLS--------  323 (622)
Q Consensus       275 ~~~----------~~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~--------  323 (622)
                      +..          ....-+....+|+  .+++.++.++.++++|..+++.+.......           ..+        
T Consensus       300 ~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~  379 (677)
T 1kb0_A          300 QETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDG  379 (677)
T ss_dssp             ESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCT
T ss_pred             ecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcC
Confidence            621          1222233334563  578888999999999999887765443211           000        


Q ss_pred             ----------------EEEEEeeCCCEEEEEecC-------------------------------------------CeE
Q psy2110         324 ----------------IVASFDRRGQHVVTGNSK-------------------------------------------GKV  344 (622)
Q Consensus       324 ----------------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i  344 (622)
                                      ..++++|++.++++...+                                           |.|
T Consensus       380 ~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l  459 (677)
T 1kb0_A          380 SKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRL  459 (677)
T ss_dssp             TSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEE
T ss_pred             CCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEE
Confidence                            146789988888775431                                           789


Q ss_pred             EEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEc
Q psy2110         345 LVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFS  424 (622)
Q Consensus       345 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  424 (622)
                      ..||+.+++.+.++... ..+.+..+...+..+++++.|+.+++||..         ..+.+..+..... ....-+.|+
T Consensus       460 ~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~---------tG~~lw~~~~~~~-~~~~p~~y~  528 (677)
T 1kb0_A          460 LAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAA---------TGEKLWEAPTGTG-VVAAPSTYM  528 (677)
T ss_dssp             EEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT---------TCCEEEEEECSSC-CCSCCEEEE
T ss_pred             EEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECC---------CCceeeeeeCCCC-cccCCEEEE
Confidence            99999999988887643 334445566778888889999999999998         3455555543221 111235677


Q ss_pred             CCCCeEEE
Q psy2110         425 GDGEYVCA  432 (622)
Q Consensus       425 pdg~~l~~  432 (622)
                      .+|+.+++
T Consensus       529 ~~G~~~v~  536 (677)
T 1kb0_A          529 VDGRQYVS  536 (677)
T ss_dssp             ETTEEEEE
T ss_pred             eCCEEEEE
Confidence            88865443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.42  E-value=7.3e-11  Score=114.62  Aligned_cols=233  Identities=12%  Similarity=0.132  Sum_probs=159.7

Q ss_pred             EEc--CCCCEEEEecCCCCeEEEEEcCCC----ceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          88 CFS--GDGEYVCAGSARQHALYIWEKSVG----NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        88 ~~s--p~~~~l~~~~~~~~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      .++  +++++|++.+..++.|+|+|+.+.    +..+++...  .+.        ........+.+..+|+| +++++..
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~--------~~~g~s~Ph~~~~~pdG-i~Vs~~g  156 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVK--------KVSGYSRLHTVHCGPDA-IYISALG  156 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHH--------HHHCEEEEEEEEECSSC-EEEEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcc--------cccCCCcccceeECCCe-EEEEcCC
Confidence            446  889999988877899999999765    555555310  000        00001122578889999 7776655


Q ss_pred             C------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------------------CCC
Q psy2110         162 D------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------------------NDG  216 (622)
Q Consensus       162 d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------------------~dg  216 (622)
                      +      |.|.+.|..+++.+..+.....+.        .....+.|+|+++.+++..                   ...
T Consensus       157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~--------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d  228 (462)
T 2ece_A          157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQ--------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN  228 (462)
T ss_dssp             ETTSCSCCEEEEECTTTCCEEEECCSBCTTC--------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred             CcCCCCCCeEEEEECCCCeEEEEEccCCCCc--------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence            5      789999999998888776442221        1234578899999888874                   368


Q ss_pred             eEEEEEcCCCceEEEeccC-C-cCeeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCcE--EEEEe--C------
Q psy2110         217 RIVLWDFLTRGIAKIISAH-M-HPVCSISW--SRNGYKIISAS------TDNNVCIWDVLTGEC--EQKYR--F------  276 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~-~-~~v~~~~~--s~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~--~------  276 (622)
                      +|.+||+.+++.+.++... . .....+.|  +|++++++.++      .+++|.+|....++.  .+.+.  .      
T Consensus       229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~  308 (462)
T 2ece_A          229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGN  308 (462)
T ss_dssp             EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSS
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccc
Confidence            9999999998888777643 1 23455656  99999888776      456888877655532  12211  0      


Q ss_pred             -----------CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC---ceeecccCCC--------------CceEEEEE
Q psy2110         277 -----------PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD---HQIVPIDEDS--------------DLSIVASF  328 (622)
Q Consensus       277 -----------~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~--------------~~~~~~~~  328 (622)
                                 ......+.+++|++.++++.-..+.|.+||+...   +.+..+....              ..-..+.+
T Consensus       309 lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l  388 (462)
T 2ece_A          309 LPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI  388 (462)
T ss_dssp             CCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred             ccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence                       2446789999999999999988999999998632   2232222210              12467889


Q ss_pred             eeCCCEEEEEe
Q psy2110         329 DRRGQHVVTGN  339 (622)
Q Consensus       329 ~~~~~~l~~~~  339 (622)
                      +|+|++|++++
T Consensus       389 SpDGk~LyVaN  399 (462)
T 2ece_A          389 SRDGRRVYVTN  399 (462)
T ss_dssp             CTTSSEEEEEC
T ss_pred             cCCCCEEEEEc
Confidence            99999999987

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.5e-11  Score=119.61  Aligned_cols=171  Identities=12%  Similarity=0.079  Sum_probs=125.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc---------eEE-EEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN---------LVK-ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      .+..+++++...++++|+.+  .+++|+++...         ... ....+.. +                 +.++|  |
T Consensus        39 ~~nlLais~~~gll~a~~~~--~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V-----------------~~l~f--d   96 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS--KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-V-----------------IFVCF--H   96 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT--EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-E-----------------EEEEE--E
T ss_pred             cccEEEEcCCCCEEEEeCCC--EEEEEEhhHhhhhhccccccccceEEeeCCC-e-----------------eEEEE--C
Confidence            45679999999999999864  67779975433         000 1111222 3                 69999  8


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +++|+++ .++.|++||+.+.........+.           ..+..+.+.+.  .+++++.||.+.+||+.++....  
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~-----------~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTSFE-----------KPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEECS-----------SCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccceee-----------cceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--
Confidence            9999999 88999999998765433333222           12556666554  38888999999999999877643  


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEE------e----CCCCeEEEEEeCCCCeEEEE
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC--EQKY------R----FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~~~~~  295 (622)
                        +...|++++|||+|  ++.|..||++++|+...++.  ...+      .    +...|.+++|.+++..+++.
T Consensus       161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence              44689999999999  77899999999999888776  5556      2    46779999999987755443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=1.8e-10  Score=122.89  Aligned_cols=321  Identities=11%  Similarity=0.061  Sum_probs=192.7

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEE
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK  118 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~  118 (622)
                      .+..+++++.++.+..+|..+....-......................+++  ++..|++++.+ +.|+.+|..+|+.+.
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~d-g~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLD-GRLEAIDAKTGQRAW  145 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTT-SEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccC-CEEEEEECCCCCEee
Confidence            466677777778888888764432211111000000000000000001122  35567777755 899999999999998


Q ss_pred             EEecc-CcceeEEEEeecCccccccceeEEEEcC---CCCEEEEee-----CCCcEEEEecCCccccccccccc-CCCcc
Q psy2110         119 ILHGT-KGELLLDVVEFDGALDCISLAVTCAFNK---RGTLLAVGC-----NDGRIVLWDFLTRGIAKIISAHM-HPEFD  188 (622)
Q Consensus       119 ~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~-~~~~~  188 (622)
                      .+... .....                ..+..+|   ++..++..+     .+|.|+.||..+|+.+-.+.... .+...
T Consensus       146 ~~~~~~~~~~~----------------~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~  209 (689)
T 1yiq_A          146 SVDTRADHKRS----------------YTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLP  209 (689)
T ss_dssp             EEECCSCTTSC----------------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred             eecCcCCCCCC----------------ccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccc
Confidence            87653 11000                0111122   444443322     36899999999998776654211 00000


Q ss_pred             ---ccc----------------ccccceEEEEECCCCCEEEEEeCCCe-------------------EEEEEcCCCceEE
Q psy2110         189 ---GAL----------------DCISLAVTCAFNKRGTLLAVGCNDGR-------------------IVLWDFLTRGIAK  230 (622)
Q Consensus       189 ---~~~----------------~~~~~v~~~~~s~~g~~l~~~~~dg~-------------------i~iwd~~~~~~~~  230 (622)
                         ..+                ........++++|++.+++++..++.                   |..+|..+++.+.
T Consensus       210 ~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          210 PEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             CCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             cccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence               000                00011125788999899999887763                   9999999999988


Q ss_pred             Eecc--CC-------cCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEEEeCCC--C-----------------
Q psy2110         231 IISA--HM-------HPVCSISWSRNGY---KIISASTDNNVCIWDVLTGECEQKYRFPS--P-----------------  279 (622)
Q Consensus       231 ~~~~--~~-------~~v~~~~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~-----------------  279 (622)
                      .++.  |.       .+........+|+   .++.++.+|.++++|..+|+.+.......  .                 
T Consensus       290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~  369 (689)
T 1yiq_A          290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEEN  369 (689)
T ss_dssp             EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHH
T ss_pred             eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhh
Confidence            7764  21       1111222223565   78889999999999999999885544221  0                 


Q ss_pred             ---------------------eEEEEEeCCCCeEEEEee-----------------------------------------
Q psy2110         280 ---------------------ILKVQFHPRNDHMFLVCP-----------------------------------------  297 (622)
Q Consensus       280 ---------------------v~~~~~~~~~~~~~~~~~-----------------------------------------  297 (622)
                                           -..++++|+...+++...                                         
T Consensus       370 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~  449 (689)
T 1yiq_A          370 AAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEM  449 (689)
T ss_dssp             HCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHH
T ss_pred             ccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCC
Confidence                                 112678887765444321                                         


Q ss_pred             ---CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCC
Q psy2110         298 ---MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA-IKSIEFARR  373 (622)
Q Consensus       298 ---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~  373 (622)
                         .++.+..||+.+++.+.....+... ....+...+..++.++.||.++.||.++++.+.+++..... ..-+.|..+
T Consensus       450 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          450 AKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             HTTCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCCcceeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence               1367999999998877766554432 22356677889999999999999999999999988855332 244667778


Q ss_pred             CCEEEE
Q psy2110         374 GNCLLV  379 (622)
Q Consensus       374 ~~~l~~  379 (622)
                      |+..++
T Consensus       529 G~qyv~  534 (689)
T 1yiq_A          529 GEQYVT  534 (689)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            874443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.39  E-value=4.6e-10  Score=109.05  Aligned_cols=224  Identities=8%  Similarity=0.004  Sum_probs=153.1

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCC----cEEEEEe--------CCCCeEEEEEeCCCCeEEEEeeCC------CcEEEEE
Q psy2110         246 RNGYKIISAS-TDNNVCIWDVLTG----ECEQKYR--------FPSPILKVQFHPRNDHMFLVCPMR------HAAVLVD  306 (622)
Q Consensus       246 ~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~------~~i~~~d  306 (622)
                      .++++|+..+ .++.|.++|+.+.    +..+.++        .......+..+|++  +++++..+      +.+.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            7788776654 5688999999755    6666663        11245567888998  55655444      7899999


Q ss_pred             ecCCceeecccCCC---CceEEEEEeeCCCEEEEEe-------------------cCCeEEEEeCCCccEEEEEecCC--
Q psy2110         307 TDGDHQIVPIDEDS---DLSIVASFDRRGQHVVTGN-------------------SKGKVLVLSCPALELKASFKAST--  362 (622)
Q Consensus       307 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~--  362 (622)
                      ..+.+.+..+....   ..-+.+.|+|+++.+++..                   ...+|.+||+.+++.+.++....  
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            99888887776332   2344588899999888874                   36799999999998888887531  


Q ss_pred             CCEEEEEE--cCCCCEEEEEe------CCCcEEEEecccccccCCCCCCCcceeee--c---------cc----c-ceee
Q psy2110         363 TAIKSIEF--ARRGNCLLVNT------GDRLIRVYNHQEVLNAGKDGDPEPIQKLQ--D---------LV----N-KTMW  418 (622)
Q Consensus       363 ~~i~~~~~--s~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~--~---------~~----~-~~~~  418 (622)
                      .....+.|  +|+++++.+++      .+++|.+|..+.       +.....+.+.  .         ..    . ....
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-------g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-------GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-------TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-------CceeEEEEEeCCCccccccccccccccccCCCce
Confidence            23445656  99999888876      456787766542       1111111110  0         00    0 1234


Q ss_pred             eeEEEcCCCCeEEEeeCCCCeEEEEECCC---CeeEEEEecCC---------CC----ceeEEEECCCCCEEEEEe
Q psy2110         419 KKCCFSGDGEYVCAGSARQHALYIWEKSV---GNLVKILHGTK---------GE----LLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~---~~~~~~~~~~~---------~~----~v~~v~~sp~~~~l~s~~  478 (622)
                      ..+.+||||++|.++....+.|.+||+..   .+++..+....         +.    ....++++|+|++|+.+.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            57899999999999988889999999853   35555554320         00    158899999999888774

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.38  E-value=1.6e-11  Score=119.45  Aligned_cols=299  Identities=12%  Similarity=0.087  Sum_probs=191.4

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  225 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~  225 (622)
                      ++.+..++ .|..++.++.|..|| .+++.........           ..+.++...++|. |.+++.+  +..+|. +
T Consensus        24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~-----------~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~   86 (330)
T 3hxj_A           24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGE-----------IIECRPSIGKDGT-IYFGSDK--VYAINP-D   86 (330)
T ss_dssp             CCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGG-----------EEEECCEETTTTE-ECCSSCE--EEEECC-C
T ss_pred             CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCC-----------CcccceEEecCCc-EEEecCc--EEEECC-C
Confidence            34444555 466677788899999 7776654433221           2346667777775 4445444  888885 5


Q ss_pred             CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110         226 RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVL  304 (622)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~  304 (622)
                      ++....+...........+.  +..|+.++.++.|..+|.. ++....... ...+.++...+++.  +.+++.++.+..
T Consensus        87 g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~  161 (330)
T 3hxj_A           87 GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYA  161 (330)
T ss_dssp             GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEE
T ss_pred             CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEE
Confidence            55544443333333333343  4567888888999999988 777666653 33455666666665  555677789999


Q ss_pred             EEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         305 VDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       305 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      +|.. +............+..+...+++..++. +  +.|..+| .+++.+..+......+.++...++|. |.+++.++
T Consensus       162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~  235 (330)
T 3hxj_A          162 INPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDG  235 (330)
T ss_dssp             ECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTT
T ss_pred             ECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCC
Confidence            9988 6555555544555666777777775554 4  6799999 78887777776667788889988876 56677778


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeE
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLD  464 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  464 (622)
                      .|..++...          ..+..+...  ......+.+.++|. |..++. ++.|+.+|. +++.+..+...... +.+
T Consensus       236 gl~~~~~~g----------~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~-~ggl~~~d~-~g~~~~~~~~~~~~-~~~  299 (330)
T 3hxj_A          236 HLYAINPDG----------TEKWRFKTG--KRIESSPVIGNTDT-IYFGSY-DGHLYAINP-DGTEKWNFETGSWI-IAT  299 (330)
T ss_dssp             EEEEECTTS----------CEEEEEECS--SCCCSCCEECTTSC-EEEECT-TCEEEEECT-TSCEEEEEECSSCC-CSC
T ss_pred             eEEEECCCC----------CEeEEeeCC--CCccccceEcCCCe-EEEecC-CCCEEEECC-CCcEEEEEEcCCcc-ccc
Confidence            888887431          222222211  11122345565665 555665 778999996 67777776654443 778


Q ss_pred             EEECCCCCEEEEEeCCcEEEeecC
Q psy2110         465 VVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       465 v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      +...+++.+.+.+.+|.+++....
T Consensus       300 ~~~d~~g~l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          300 PVIDENGTIYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CEECTTCCEEEECTTSCEEEEEC-
T ss_pred             eEEcCCCEEEEEcCCCeEEEEecc
Confidence            888888887665559999887653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=3.3e-11  Score=121.31  Aligned_cols=244  Identities=11%  Similarity=0.030  Sum_probs=172.5

Q ss_pred             CCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEE-c-CCCCEEEEee--------
Q psy2110          91 GDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAF-N-KRGTLLAVGC--------  160 (622)
Q Consensus        91 p~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~-s-~d~~~l~s~~--------  160 (622)
                      +||++|.....+++.|.+.|+.+.++...+.-..+.-                +..+++ + |+++++++++        
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~----------------phg~~~~~~p~~~~v~~~~~~~~p~~~  162 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG----------------IHGLRPQKWPRSNYVFCNGEDETPLVN  162 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS----------------EEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCC----------------CcceeeeecCCCcEEEEecccccccCC
Confidence            4899999888777899999999999888664332211                147787 5 8999998885        


Q ss_pred             ----------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC--------------
Q psy2110         161 ----------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG--------------  216 (622)
Q Consensus       161 ----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg--------------  216 (622)
                                .++.+.+.|..+.+....+.....+            ..++++|+|+++++.+.+.              
T Consensus       163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p------------d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL------------DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC------------CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             CCcccccccccCceEEEEECCCCeEEEEEEeCCCc------------cceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence                      2457889999887766665532222            3468999999999988653              


Q ss_pred             -eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC--CcE-EEEEeCCCCeEEEEEeCCCCeE
Q psy2110         217 -RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT--GEC-EQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       217 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                       .|.+.+.....               .+.++|++...    +.|.+.|..+  ++. +..+.......++.++|||+++
T Consensus       231 d~v~V~~~~~~~---------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          231 DHIVVFNIAEIE---------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL  291 (595)
T ss_dssp             EEEEEEEHHHHH---------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEE
T ss_pred             ceEEEeecccee---------------EeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEE
Confidence             23444432211               12234443332    5699999998  655 6777766778889999999999


Q ss_pred             EEEeeCCCcEEEEEecCCc------------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC---------
Q psy2110         293 FLVCPMRHAAVLVDTDGDH------------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA---------  351 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------  351 (622)
                      ++++..+..+.++|+.+..            ..... .-......++|+++|...++.-.+++|.+||+..         
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            9999999999999998642            12222 2334567889999994444566789999999876         


Q ss_pred             -ccEEEEEecCCCCE-----EEEEEcCCCCEEEEEeC
Q psy2110         352 -LELKASFKASTTAI-----KSIEFARRGNCLLVNTG  382 (622)
Q Consensus       352 -~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~~  382 (622)
                       .+.+.++..|..+-     .++.++|||++|++...
T Consensus       371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence             56778887765432     12245799999999864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=2e-09  Score=104.09  Aligned_cols=226  Identities=11%  Similarity=0.010  Sum_probs=148.4

Q ss_pred             CeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGY-KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      -..++.|++++. .+++...++.|..||..+++.. .+.....+.++.++|++.. +++.  ...+.+||..++......
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l-~v~~--~~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQ-LIAS--DDGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEE-EEEE--TTEEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeE-EEEE--CCCEEEEECCCCcEEEEe
Confidence            346788999755 4555556789999999887643 4556678999999999874 3333  345889998766533221


Q ss_pred             cC----CCCceEEEEEeeCCCEEEEEec------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCc
Q psy2110         317 DE----DSDLSIVASFDRRGQHVVTGNS------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT-GDRL  385 (622)
Q Consensus       317 ~~----~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~  385 (622)
                      ..    ....+..++++++|+++++...      .+.|..++  +++... +..+......++|+|+++.|+++. .++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            11    1235778999999997765542      25677777  454433 333334577999999999776654 5688


Q ss_pred             EEEEecc--cccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCcee
Q psy2110         386 IRVYNHQ--EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLL  463 (622)
Q Consensus       386 i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  463 (622)
                      |.+|++.  ....   ......+..+..  .......++++++|++.++... ++.|++|+. +++.+..+..+... ++
T Consensus       203 I~~~d~~~~~Gl~---~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~-~g~~~~~i~~~~~~-~~  274 (326)
T 2ghs_A          203 LMRVPLDARTGLP---TGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNHIARYEVPGKQ-TT  274 (326)
T ss_dssp             EEEEEBCTTTCCB---SSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCEEEEEECSCSB-EE
T ss_pred             EEEEEcccccCCc---ccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeC-CCEEEEECC-CCCEEEEEECCCCC-cE
Confidence            9999975  2100   001111111111  1123356899999987776654 678999998 67777888776655 99


Q ss_pred             EEEEC-CCCCEEEEEe
Q psy2110         464 DVVWH-PVRPIIASIS  478 (622)
Q Consensus       464 ~v~~s-p~~~~l~s~~  478 (622)
                      +++|+ |++..|+.++
T Consensus       275 ~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEEESTTSCEEEEEE
T ss_pred             EEEEecCCCCEEEEEe
Confidence            99998 8888765554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=2.5e-11  Score=117.97  Aligned_cols=179  Identities=8%  Similarity=0.068  Sum_probs=134.6

Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc-cccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      +..+++++...++++|+.+ .+++|++.+.+.... -.....+  ........ |+.++|  ++++|+++ .++.|++||
T Consensus        40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            3689999999999999987 566798765431100 0000000  00111123 899999  99999999 789999999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      +.+.........|..++.++.+.+..  ++++..||.|.+||+.++....   +...|.+++|+|+|   ++.+..++.+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG---~~vg~~dg~i  184 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ---LAVLLKDRSF  184 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE---EEEEETTSCE
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc---eEEEEcCCcE
Confidence            98877666777788889988887653  8889999999999999887654   34689999999999   5678889999


Q ss_pred             EEEEecCCce--eecc------c---CCCCceEEEEEeeCCCEEEE
Q psy2110         303 VLVDTDGDHQ--IVPI------D---EDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       303 ~~~d~~~~~~--~~~~------~---~~~~~~~~~~~~~~~~~l~~  337 (622)
                      ++|+......  ...+      .   .|...+.++.|.+++.++++
T Consensus       185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999887663  3333      2   36788999999999988876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.34  E-value=4.2e-09  Score=98.71  Aligned_cols=250  Identities=10%  Similarity=0.035  Sum_probs=162.0

Q ss_pred             CEEEEEeCCCeEEEEEcCCCceE-----EEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC-CCC
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRGIA-----KIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRF-PSP  279 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~  279 (622)
                      .+|+.+.. +.|+.+++......     ..+......+.+++|++++..|+.+. ..+.|..+++........+.. ...
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555543 47888888754321     12222234578999999776666555 467899999987655444432 257


Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEE
Q psy2110         280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---KGKVLVLSCPALELKA  356 (622)
Q Consensus       280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  356 (622)
                      ...+++++++..++++....+.|.++++..................++++|++..|+.+..   .+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            8899999988888888888889999998754332222222245678999997666655543   3688888876432 22


Q ss_pred             EE-ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEee
Q psy2110         357 SF-KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS  434 (622)
Q Consensus       357 ~~-~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  434 (622)
                      .+ ...-.....+++++++..|.++. ..+.|.++++...         .....+... .  ....+++  ++.+|+.+.
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---------~~~~~~~~~-~--~P~gi~~--d~~~lyva~  225 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEGL-Q--YPFAVTS--YGKNLYYTD  225 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEECC-C--SEEEEEE--ETTEEEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---------ceEEEecCC-C--CceEEEE--eCCEEEEEE
Confidence            22 23334678999999887776664 4678999998731         111111111 1  1123444  466777776


Q ss_pred             CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC
Q psy2110         435 ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP  472 (622)
Q Consensus       435 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~  472 (622)
                      ...+.|+++|..+++.+..+..........+++.|++.
T Consensus       226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            65789999999999988888654322267888888865

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.32  E-value=2.7e-10  Score=110.75  Aligned_cols=299  Identities=11%  Similarity=0.083  Sum_probs=189.0

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEE
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIV  166 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~  166 (622)
                      ..+..++. |.+++.+ +.|..|| .+++.+..+..+...+                 .++...+++. |..++.+  |.
T Consensus        25 ~~~d~~g~-l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~-----------------~~~~~~~~g~-l~v~t~~--l~   81 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIE-----------------CRPSIGKDGT-IYFGSDK--VY   81 (330)
T ss_dssp             CEECTTSC-EECSSTT-TTTEEEC-TTSCEEESSCGGGEEE-----------------ECCEETTTTE-ECCSSCE--EE
T ss_pred             ceEccCCe-EEEEcCC-CEEEEEC-CCCcEEEEEecCCCcc-----------------cceEEecCCc-EEEecCc--EE
Confidence            45555665 4455544 7899999 8888766554433322                 4666777775 4445444  88


Q ss_pred             EEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcC
Q psy2110         167 LWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR  246 (622)
Q Consensus       167 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  246 (622)
                      .+|. +++....+......           .....+.  +..+.+++.++.+..+|.. ++.......+...+.++...+
T Consensus        82 ~~d~-~g~~~~~~~~~~~~-----------~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~  146 (330)
T 3hxj_A           82 AINP-DGTEKWRFDTKKAI-----------VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE  146 (330)
T ss_dssp             EECC-CGGGGGGSCC----------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred             EECC-CCcEEEEEECCCCc-----------ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence            8885 55554443322110           1112222  4567788888999999988 777766666666677778877


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEE
Q psy2110         247 NGYKIISASTDNNVCIWDVLTGECEQKYRF-PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIV  325 (622)
Q Consensus       247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  325 (622)
                      ++. |+.++.++.|..+|.. ++....+.. ...+.++...+++. ++ +++  +.+..+| .++............+.+
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~  219 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTR  219 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceec
Confidence            776 6667778999999998 877766663 34456666766665 33 333  7888898 665555555555566777


Q ss_pred             EEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCc
Q psy2110         326 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       326 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                      +..+++|. |.+++.++.+..++ .+++.+..+......+.++.+.+++. |.+++.++.|..+|...          ..
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g----------~~  286 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDG----------TE  286 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTS----------CE
T ss_pred             eEECCCCe-EEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCC----------cE
Confidence            77887775 45566677888887 46666666665555555666766665 77788888899988531          12


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV  447 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~  447 (622)
                      +..+..  ....+.++...++|++. .++. +|.+++.....
T Consensus       287 ~~~~~~--~~~~~~~~~~d~~g~l~-~gt~-~G~~~~~~~~~  324 (330)
T 3hxj_A          287 KWNFET--GSWIIATPVIDENGTIY-FGTR-NGKFYALFNLE  324 (330)
T ss_dssp             EEEEEC--SSCCCSCCEECTTCCEE-EECT-TSCEEEEEC--
T ss_pred             EEEEEc--CCccccceEEcCCCEEE-EEcC-CCeEEEEeccc
Confidence            222221  22334456777787755 4554 78888877543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=3.6e-07  Score=99.73  Aligned_cols=449  Identities=11%  Similarity=0.048  Sum_probs=243.9

Q ss_pred             cceEEEEccCCcEEEeccCCCeEEEEecccccee---------------------cccCceEEeecCCceEEEeechhhh
Q psy2110           3 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK---------------------ASRGNCLLVNTGDRLIRVYNHQEVL   61 (622)
Q Consensus         3 ~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~---------------------~~~~~~l~~~~~d~~i~~w~~~~~~   61 (622)
                      .|.++...++|.+.+ |..++-|..++....++.                     ......|.+++.. -+.+|+.....
T Consensus       164 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~  241 (781)
T 3v9f_A          164 QTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET  241 (781)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence            477888888887666 444445777776553221                     0112233344444 46667754321


Q ss_pred             hcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccc
Q psy2110          62 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI  141 (622)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  141 (622)
                      ..........    ........+.++...++|.+.+ |+.. +-|.+++..++........+-..+.   .......-..
T Consensus       242 ~~~~~~~~~~----~~~l~~~~i~~i~~d~~g~lWi-gt~~-~Gl~~~~~~~~~~~~~~~~~f~~~~---~~~~~~~l~~  312 (781)
T 3v9f_A          242 FTNFHNNPGN----IHGALSSYIFSIKQLKDNKLWI-ATEL-NGIMILDLQQNQFLLPEQIRFEFIR---EGDNNYSLSN  312 (781)
T ss_dssp             EEC---------------CCCCEEEEEECTTSEEEE-EESS-SCEEEEETTCC---------CEEEC---BCSSTTSBSS
T ss_pred             EEEEEcCCCc----cccccCceEEEEEECCCCCEEE-EeCC-CCeEEECCCCCeeeeeecccccccc---CCCCCCCCCC
Confidence            1000000000    0011234567888888887655 4432 5688899876654322110000000   0000000012


Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                      ..|.++...++|. |-.|+.++-|..++...+........... .....+ ....|.++...++|++. .|+.++-|..|
T Consensus       313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~~~~l-~~~~v~~i~~d~~g~lW-igt~~~Gl~~~  388 (781)
T 3v9f_A          313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-MNESSL-SNKVVSSVCDDGQGKLW-IGTDGGGINVF  388 (781)
T ss_dssp             SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C-CCSSCC-SSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred             CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc-cccCCC-CCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence            2356888888886 55666667788888766533221110000 000000 11358888888888754 56656668889


Q ss_pred             EcCCCceEEEe---ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEE
Q psy2110         222 DFLTRGIAKII---SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       222 d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~  295 (622)
                      +..++......   ......|.++...++|. |..|+.++-|..++..+++......   ....|.++...+++.  +..
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lwi  465 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK--IWI  465 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE--EEE
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC--EEE
Confidence            87654332211   12346789999888876 4556666779999988776543221   235688888877765  333


Q ss_pred             eeCCCcEEEEEecCCceeecccC-----CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----CCCCEE
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDE-----DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----STTAIK  366 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~  366 (622)
                      ++. +.+..++..+.........     ....+.++..+++|.+.+.....| +..|+..+++.. .+..    ....|.
T Consensus       466 gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~  542 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTIN  542 (781)
T ss_dssp             EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEE
T ss_pred             EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeE
Confidence            444 5688888876433221111     135688888888887665443355 888998766533 3321    245689


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         367 SIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                      ++...++|... .++.+|.|..||...          ..+..+..  ......+.++...++|++.+++.  +| |..++
T Consensus       543 ~i~~d~~g~lW-i~T~~Glv~~~d~~~----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~G-l~~~~  608 (781)
T 3v9f_A          543 QIYRSSKGQMW-LATGEGLVCFPSARN----------FDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TG-ISCYI  608 (781)
T ss_dssp             EEEECTTSCEE-EEETTEEEEESCTTT----------CCCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SC-EEEEE
T ss_pred             EEEECCCCCEE-EEECCCceEEECCCC----------CcEEEccccCCCCCceEEEEEECCCCCEEEEcC--Cc-eEEEE
Confidence            99999998854 445566558887753          11222221  11223356778888888665543  44 78888


Q ss_pred             CCCCeeEEEEecCCC---C--ceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         445 KSVGNLVKILHGTKG---E--LLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       445 ~~~~~~~~~~~~~~~---~--~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      ..+++. ..+....+   .  ...++...++|.+++.+.+| +..+++.
T Consensus       609 ~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G-l~~f~p~  655 (781)
T 3v9f_A          609 TSKKCF-YTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING-LCFFNPD  655 (781)
T ss_dssp             TTTTEE-EEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE-EEEECSC
T ss_pred             CCCCce-EEecccCCccccccccCceEECCCCEEEEECCCc-eEEEChh
Confidence            876653 44432221   1  13466778888877766677 4455654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=1.1e-06  Score=96.05  Aligned_cols=444  Identities=8%  Similarity=-0.017  Sum_probs=247.7

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceec---------------------cc--CceEEeecCCceEEEeech
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA---------------------SR--GNCLLVNTGDRLIRVYNHQ   58 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~---------------------~~--~~~l~~~~~d~~i~~w~~~   58 (622)
                      ..|.++...++|..|-.|+.++-+..||..+.++..                     ..  ...+-+++..+-+..++..
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~  145 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA  145 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC
Confidence            358899999988823345666468888876543221                     01  2233334423335555543


Q ss_pred             hhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCcc
Q psy2110          59 EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL  138 (622)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  138 (622)
                      ...........     ... .....+.++...++|.+.+. +.. +-|..||..+++............          .
T Consensus       146 ~~~~~~~~~~~-----~~~-l~~~~i~~i~~d~~g~lwig-t~~-~Gl~~~~~~~~~~~~~~~~~~~~~----------~  207 (781)
T 3v9f_A          146 TGKFTHYNKST-----VPA-LPSEQTWTATEAEDGKLYIG-HVE-GGLSILSLNDKSVKHFVHDPQNPN----------S  207 (781)
T ss_dssp             TTEEEEESTTT-----CTT-CSCCCEEEEEEEETTEEEEE-ETT-TEEEEEETTTTEEEEECC-----------------
T ss_pred             CCeEEeeccCc-----ccC-CCccceEEEEECCCCCEEEE-ecC-CCeEEEcCCCCceEeeecCCCCcc----------c
Confidence            21110000000     000 11234567777777776654 333 468899987765433211111000          0


Q ss_pred             ccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeE
Q psy2110         139 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI  218 (622)
Q Consensus       139 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i  218 (622)
                      -....|.++...+++.+.+. +.+ -+.+||..+++..........+    .......|.++...++|.+ ..|+..+-|
T Consensus       208 l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~----~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl  280 (781)
T 3v9f_A          208 LPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNI----HGALSSYIFSIKQLKDNKL-WIATELNGI  280 (781)
T ss_dssp             -CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---------------CCCCEEEEEECTTSEE-EEEESSSCE
T ss_pred             CCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCcc----ccccCceEEEEEECCCCCE-EEEeCCCCe
Confidence            00122468888888875554 444 6888997765433221111000    0001135888888888864 456665668


Q ss_pred             EEEEcCCCceEEEec--------------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---------
Q psy2110         219 VLWDFLTRGIAKIIS--------------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---------  275 (622)
Q Consensus       219 ~iwd~~~~~~~~~~~--------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------  275 (622)
                      .+++..++.......              -....|.++...++|. |..|+.++-|..++..++.......         
T Consensus       281 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~  359 (781)
T 3v9f_A          281 MILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESS  359 (781)
T ss_dssp             EEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSC
T ss_pred             EEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCC
Confidence            889987665332111              1245789999988886 5667667779999887665433211         


Q ss_pred             -CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc---cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC
Q psy2110         276 -FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI---DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       276 -~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  351 (622)
                       ....|.++...+++.  +.+++.++.+..++..+.......   ......|.++..+++|.+.+ |+.++-+..++..+
T Consensus       360 l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~  436 (781)
T 3v9f_A          360 LSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL  436 (781)
T ss_dssp             CSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS
T ss_pred             CCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC
Confidence             234688888887775  445565666888887643222111   12345678888887776555 66666699999877


Q ss_pred             ccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc----ccceeeeeEEEcC
Q psy2110         352 LELKASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL----VNKTMWKKCCFSG  425 (622)
Q Consensus       352 ~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~sp  425 (622)
                      ++......  .....|.++...++|. |.+++. +-|.+|+....          ....+...    .....+.+++..+
T Consensus       437 ~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~i~~d~  504 (781)
T 3v9f_A          437 KKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASK----------KVIHHYDTSNSQLLENFVRSIAQDS  504 (781)
T ss_dssp             CEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSS----------SCCEEECTTTSSCSCSCEEEEEECT
T ss_pred             CcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCC----------eEEecccCcccccccceeEEEEEcC
Confidence            65433221  2346799999988887 445555 56888887631          11111111    1124466788888


Q ss_pred             CCCeEEEeeCCCCeEEEEECCCCeeEEEEecC---CCCceeEEEECCCCCEEEEEeCCcEEEeecCC
Q psy2110         426 DGEYVCAGSARQHALYIWEKSVGNLVKILHGT---KGELLLDVVWHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       426 dg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      +|++.+.... +| |+.|+..+++. ..+...   ....|.++...++|.+.++...|.+..|+..+
T Consensus       505 ~g~lWigt~~-~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~  568 (781)
T 3v9f_A          505 EGRFWIGTFG-GG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN  568 (781)
T ss_dssp             TCCEEEEESS-SC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred             CCCEEEEEcC-CC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence            8886655442 34 88899876654 333321   12238899999998866655566558887753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.23  E-value=2.1e-08  Score=104.26  Aligned_cols=309  Identities=10%  Similarity=0.036  Sum_probs=181.2

Q ss_pred             CCEEEEeeC-CCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         153 GTLLAVGCN-DGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       153 ~~~l~s~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      +..+++++. ++.|.-+|. .+|+.+-.+.............|......+++  .+..+++++.++.+..+|..+++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 788999999 88887765543321100000000000011122  35678888889999999999999887


Q ss_pred             EeccCCc----Cee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe-------------------
Q psy2110         231 IISAHMH----PVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI-------------------  280 (622)
Q Consensus       231 ~~~~~~~----~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v-------------------  280 (622)
                      .......    .+. +.... ++ .++.++.      ++.|..+|..+|+.+..+....+.                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6653210    121 11111 34 5555554      789999999999998887643221                   


Q ss_pred             --------------------EEEEEeCCCCeEEEEeeC-----------C----CcEEEEEecCCceeecccCCC-----
Q psy2110         281 --------------------LKVQFHPRNDHMFLVCPM-----------R----HAAVLVDTDGDHQIVPIDEDS-----  320 (622)
Q Consensus       281 --------------------~~~~~~~~~~~~~~~~~~-----------~----~~i~~~d~~~~~~~~~~~~~~-----  320 (622)
                                          ..+++.+....+++..+.           +    +.+..+|..+++.+..+....     
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                                124566665544444321           1    358889998887776554321     


Q ss_pred             ----CceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCC-------------CCE---------------
Q psy2110         321 ----DLSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKAST-------------TAI---------------  365 (622)
Q Consensus       321 ----~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i---------------  365 (622)
                          .....+....+|+   .++.++.+|.++++|..+++.+..+....             .++               
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~  377 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN  377 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence                1111122334674   57788899999999999999887765322             111               


Q ss_pred             -----------EEEEEcCCCCEEEEEeC-------------------------------------CCcEEEEeccccccc
Q psy2110         366 -----------KSIEFARRGNCLLVNTG-------------------------------------DRLIRVYNHQEVLNA  397 (622)
Q Consensus       366 -----------~~~~~s~~~~~l~~~~~-------------------------------------d~~i~i~d~~~~~~~  397 (622)
                                 ..++++|+..+|++.+.                                     ++.|..||+.+    
T Consensus       378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t----  453 (571)
T 2ad6_A          378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT----  453 (571)
T ss_dssp             ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT----
T ss_pred             ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC----
Confidence                       24578888777777643                                     35566666652    


Q ss_pred             CCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110         398 GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  477 (622)
                           .+.+-++....   ......+...+..++.++. ++.|+.+|.++|+.+..+.......-.-+.+..+++.++.+
T Consensus       454 -----G~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~-dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~  524 (571)
T 2ad6_A          454 -----GKAKWTKWEKF---AAWGGTLYTKGGLVWYATL-DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             -----CCEEEEEEESS---CCCSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             -----CCEEEEecCCC---CccceeEEECCCEEEEEcC-CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence                 22222222111   1111122334667777776 89999999999999988875543212224455666654444


Q ss_pred             e
Q psy2110         478 S  478 (622)
Q Consensus       478 ~  478 (622)
                      .
T Consensus       525 ~  525 (571)
T 2ad6_A          525 M  525 (571)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.21  E-value=3.1e-09  Score=97.21  Aligned_cols=194  Identities=9%  Similarity=0.007  Sum_probs=141.3

Q ss_pred             eEEEEcCCCCEEEEec-CCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE-eeCC
Q psy2110          85 KKCCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV-GCND  162 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~-~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~d  162 (622)
                      ..++|+|++...++.+ ..++.|.++|+.+++.+..+.-.....-                ..+++.  +..|+. .-.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg----------------eGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG----------------EGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE----------------EEEEEE--TTEEEEEETTC
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce----------------EEEEEe--CCEEEEEEecC
Confidence            4689999875555544 2347999999999999988764332220                144444  545544 4467


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC-----c
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM-----H  237 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~  237 (622)
                      +.+.++|..+++.+..+... .+.            ...+++||+.|+++..++.|.++|..+.+....+.-..     .
T Consensus        86 ~~v~viD~~t~~v~~~i~~g-~~~------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ-MKD------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC-SSS------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEECCCCcEEEEEECC-CCC------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence            89999999998888776543 111            12355678877777778999999999988887776321     2


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--------------CCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--------------SPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .++.+.|. +|...+....++.|.+.|..+++.+..+...              .....++|+|+++.+++++.....++
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            46788888 6754444445789999999999999998753              35689999999999999999999999


Q ss_pred             EEEecCC
Q psy2110         304 LVDTDGD  310 (622)
Q Consensus       304 ~~d~~~~  310 (622)
                      ..++...
T Consensus       232 ~i~l~~~  238 (266)
T 2iwa_A          232 EIKLHLV  238 (266)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            9888653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=6e-08  Score=90.80  Aligned_cols=217  Identities=9%  Similarity=0.003  Sum_probs=141.7

Q ss_pred             eEEEEcCCCCEEEEe-eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEE
Q psy2110         145 VTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd  222 (622)
                      ..++|++++..|+.+ ..++.|..++...+.....+...           ......+++++++..|+.+ ...+.|.+++
T Consensus        39 ~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~  107 (267)
T 1npe_A           39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----------LGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-----------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-----------CCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence            589999976655554 45688999998765432222111           0236789999976655555 4567899999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      +........+.........++++|++..|+.+..   .+.|..+++.......... .......+++++++..++++...
T Consensus       108 ~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence            8654332223222246789999997666666654   3678888876433222222 23467899999998888888888


Q ss_pred             CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCC-CCEEEEEEcCCCC
Q psy2110         299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGN  375 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~  375 (622)
                      .+.|..++............ ......++..  +..++.+. ..+.|..+|..+++.+..+.... .....+++.|++.
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            89999999875433322222 2333455554  45555544 56899999999999888886443 2466788888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=8.5e-09  Score=94.29  Aligned_cols=206  Identities=9%  Similarity=0.086  Sum_probs=143.4

Q ss_pred             eEEEeccCCc--CeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         228 IAKIISAHMH--PVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       228 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .+.++. |..  ....+.|++++..+++.+.  ++.|+++|+.+++.+..+..+.......+..+++.++++.-.++.+.
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~   89 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF   89 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence            444553 433  3579999998754444443  57999999999999998875544333334444667888888899999


Q ss_pred             EEEecCCceeecccCC-CCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEE
Q psy2110         304 LVDTDGDHQIVPIDED-SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCL  377 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l  377 (622)
                      ++|..+.+.+..+... ..   ...++++|+.++++..++.|.++|..+.+.+..+....     ..++.+.|. +|..+
T Consensus        90 viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             EEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            9999988877776543 22   23466788888777788999999999999888877322     246788888 67544


Q ss_pred             EEEeCCCcEEEEecccccccCCCCCCCcceeeecc--c---------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         378 LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--V---------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       378 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      +....++.|.+.|..+         .+.+..+...  .         .......++|+|+++.+++++.....|++.++.
T Consensus       166 vn~~~~~~V~vID~~t---------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          166 ANIWQTDCIARISAKD---------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEETTSSEEEEEETTT---------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EecCCCCeEEEEECCC---------CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            4444578999999983         3344444321  0         112346789999998877776657788888865


Q ss_pred             C
Q psy2110         447 V  447 (622)
Q Consensus       447 ~  447 (622)
                      .
T Consensus       237 ~  237 (266)
T 2iwa_A          237 L  237 (266)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=2.7e-08  Score=105.79  Aligned_cols=308  Identities=14%  Similarity=0.154  Sum_probs=184.7

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..|++++.++.|..+|..+|+.+-.+.............+......+++  .+..+++++.++.|..+|..+++.+..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            45677777788999999999988766654322111000000000011122  2457888888999999999999998877


Q ss_pred             ccCC----cCee-EEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCC--CC--------------------
Q psy2110         233 SAHM----HPVC-SISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFP--SP--------------------  279 (622)
Q Consensus       233 ~~~~----~~v~-~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~--~~--------------------  279 (622)
                      ....    ..+. ..... ++ .++.+..      ++.|+.+|..+|+.+..+...  .+                    
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            6421    1111 11111 34 4555433      589999999999998887631  11                    


Q ss_pred             ----------eEEEEEeCCCCeEEEEeeCCC-------------------cEEEEEecCCceeecccCC--C-------C
Q psy2110         280 ----------ILKVQFHPRNDHMFLVCPMRH-------------------AAVLVDTDGDHQIVPIDED--S-------D  321 (622)
Q Consensus       280 ----------v~~~~~~~~~~~~~~~~~~~~-------------------~i~~~d~~~~~~~~~~~~~--~-------~  321 (622)
                                ...+++.|+... ++++..++                   .+..+|..+++.+..+...  .       .
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~  300 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ  300 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeeCCCCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence                      113677777664 44444443                   4888999888877665532  1       1


Q ss_pred             ceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC------------CE---------------------
Q psy2110         322 LSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT------------AI---------------------  365 (622)
Q Consensus       322 ~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~i---------------------  365 (622)
                      ......+..+|+   .++.++.+|.++++|..+|+++........            ++                     
T Consensus       301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~  380 (668)
T 1kv9_A          301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA  380 (668)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred             CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence            222233344665   688899999999999999998855442210            00                     


Q ss_pred             ---EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEecccccccCCCCCCCcc
Q psy2110         366 ---KSIEFARRGNCLLVNT------------------------------------GDRLIRVYNHQEVLNAGKDGDPEPI  406 (622)
Q Consensus       366 ---~~~~~s~~~~~l~~~~------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~  406 (622)
                         ..++++|+...+++..                                    .++.|..||+.+         .+.+
T Consensus       381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t---------G~~~  451 (668)
T 1kv9_A          381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK---------QKAA  451 (668)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT---------TEEE
T ss_pred             cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC---------CcEE
Confidence               1257777766665432                                    125566677652         2222


Q ss_pred             eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe
Q psy2110         407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS  478 (622)
Q Consensus       407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~  478 (622)
                      -.....   .......+...|.+|++++. ++.|+.||..+|+.+..+....+-.-.-+.+..+|+ +++.+.
T Consensus       452 W~~~~~---~~~~~~~~~t~gg~vf~g~~-dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          452 WKVPYP---THWNGGTLSTAGNLVFQGTA-AGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEEES---SSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEccCC---CCCcCceeEeCCCEEEEECC-cccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            222211   11112244557788888876 999999999999999888765432113345555666 444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.16  E-value=3e-08  Score=102.89  Aligned_cols=306  Identities=11%  Similarity=0.079  Sum_probs=177.4

Q ss_pred             CCEEEEeeC-CCcEEEEec-CCcccccccccccCCCcccccccccceEEEEECCCCCE----EEEEeCCCeEEEEEcCCC
Q psy2110         153 GTLLAVGCN-DGRIVLWDF-LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL----LAVGCNDGRIVLWDFLTR  226 (622)
Q Consensus       153 ~~~l~s~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~----l~~~~~dg~i~iwd~~~~  226 (622)
                      +..|++++. ++.|.-+|. .+|+.+-.+.............|......++++|.+..    |++++.++.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446666666 788999999 88887766544322110000000000122455443334    788888999999999999


Q ss_pred             ceEEEeccCCc----Cee-EEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEEEEeCCCCe---------------
Q psy2110         227 GIAKIISAHMH----PVC-SISWSRNGYKIISAS------TDNNVCIWDVLTGECEQKYRFPSPI---------------  280 (622)
Q Consensus       227 ~~~~~~~~~~~----~v~-~~~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~v---------------  280 (622)
                      +.+........    .+. ..... ++ .++.++      .++.|+.+|..+|+.+-.+....+.               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            98877653220    121 11121 44 455554      3789999999999998887743322               


Q ss_pred             ------------------------EEEEEeCCCCeEEEEeeC---------------CCcEEEEEecCCceeecccCCCC
Q psy2110         281 ------------------------LKVQFHPRNDHMFLVCPM---------------RHAAVLVDTDGDHQIVPIDEDSD  321 (622)
Q Consensus       281 ------------------------~~~~~~~~~~~~~~~~~~---------------~~~i~~~d~~~~~~~~~~~~~~~  321 (622)
                                              ..+++.+....+++..+.               ...+..+|..+++.+..+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                    124555665544443332               14788899998877765543221


Q ss_pred             ---------ceEEEEEe-eCC---CEEEEEecCCeEEEEeCCCccEEEEEecCC-------------CCE----------
Q psy2110         322 ---------LSIVASFD-RRG---QHVVTGNSKGKVLVLSCPALELKASFKAST-------------TAI----------  365 (622)
Q Consensus       322 ---------~~~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i----------  365 (622)
                               ...-+... .+|   +.++.++.+|.++++|..+++++.......             .++          
T Consensus       300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~  379 (599)
T 1w6s_A          300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD  379 (599)
T ss_dssp             CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred             ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence                     11112222 467   467778999999999999999887765221             111          


Q ss_pred             ----------------EEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEe
Q psy2110         366 ----------------KSIEFARRGNCLLVNTGD---------------------------------------RLIRVYN  390 (622)
Q Consensus       366 ----------------~~~~~s~~~~~l~~~~~d---------------------------------------~~i~i~d  390 (622)
                                      ..++++|+..++++...+                                       +.|..||
T Consensus       380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D  459 (599)
T 1w6s_A          380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN  459 (599)
T ss_dssp             CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred             CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence                            245778877776665432                                       3344444


Q ss_pred             cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      +.+         .+.+-.....   .....-.+...|..|+.++. |+.|+.||.++|+.+-.++...+....-+.|..+
T Consensus       460 ~~t---------G~~~W~~~~~---~~~~~g~~~tagg~vf~gt~-dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~  526 (599)
T 1w6s_A          460 AIT---------GDYKWEKMER---FAVWGGTMATAGDLVFYGTL-DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHK  526 (599)
T ss_dssp             TTT---------CCEEEEEEES---SCCCSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             CCC---------CCEEeEecCC---CCccCcceEecCCEEEEECC-CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeC
Confidence            431         1111111100   00000112235677777776 8999999999999998887654332233555556


Q ss_pred             CCE
Q psy2110         471 RPI  473 (622)
Q Consensus       471 ~~~  473 (622)
                      |+.
T Consensus       527 G~q  529 (599)
T 1w6s_A          527 GTQ  529 (599)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=6e-08  Score=103.12  Aligned_cols=282  Identities=12%  Similarity=0.073  Sum_probs=176.8

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                      +..|++++.+ +.|+.+|..+|+.+..+........      .....|......+++  .+..|++++.|+.|..+|..+
T Consensus        66 ~g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t  136 (668)
T 1kv9_A           66 DGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVK------ARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT  136 (668)
T ss_dssp             TTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGG------GGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEECCC-CeEEEEECCCChhceEECCCCCccc------cccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence            4455555544 8999999999999988865432210      000000000012222  355788888899999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCC----------
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHM----------  236 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~----------  236 (622)
                      |+.+-.+........ ..... ..+    +. + ..++++..      +|.|+.+|..+++.+..+....          
T Consensus       137 G~~~W~~~~~~~~~~-~~~~~-~P~----v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          137 GKAIWSQQTTDPAKP-YSITG-APR----VV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             CCEEEEEECSCTTSS-CBCCS-CCE----EE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             CCEeeeeccCCCCCc-ceecC-CCE----EE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence            988766654211100 00000 011    11 3 34555543      5899999999999988775210          


Q ss_pred             ---------------------cCeeEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCcEEEEEeC
Q psy2110         237 ---------------------HPVCSISWSRNGYKIISASTDN-------------------NVCIWDVLTGECEQKYRF  276 (622)
Q Consensus       237 ---------------------~~v~~~~~s~~~~~l~s~~~d~-------------------~i~iwd~~~~~~~~~~~~  276 (622)
                                           .....+++.++...++.+..++                   .|..+|..+|+.+..++.
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                                 0112468888888888887665                   399999999999888773


Q ss_pred             C----------CCeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC------------Cc----------
Q psy2110         277 P----------SPILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS------------DL----------  322 (622)
Q Consensus       277 ~----------~~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~----------  322 (622)
                      .          .+.....+..+++  .+++.++.++.++++|..+++.+.......            ..          
T Consensus       289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~  368 (668)
T 1kv9_A          289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK  368 (668)
T ss_dssp             STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred             CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence            2          2333333333553  368888899999999998887663221110            00          


Q ss_pred             --------------eEEEEEeeCCCEEEEEe------------------------------------cCCeEEEEeCCCc
Q psy2110         323 --------------SIVASFDRRGQHVVTGN------------------------------------SKGKVLVLSCPAL  352 (622)
Q Consensus       323 --------------~~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~  352 (622)
                                    -..++++|+...+++..                                    .+|.|..||+.++
T Consensus       369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG  448 (668)
T 1kv9_A          369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ  448 (668)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred             CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence                          01257788776665421                                    2378999999999


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +.+.+...+. ......+...+.++++++.|+.|+.||..
T Consensus       449 ~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          449 KAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhh
Confidence            9888776543 23333444567788899999999999988

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.15  E-value=1.3e-05  Score=83.80  Aligned_cols=430  Identities=8%  Similarity=-0.038  Sum_probs=229.2

Q ss_pred             cceEEEEccCCcEEE-eccCCCeEEEEeccccc---eec--------------ccCceEEeecCCceEEEeechhhhhcC
Q psy2110           3 LSIVASFDRRGQHVV-TGNSKGKVLVLSCPALE---LKA--------------SRGNCLLVNTGDRLIRVYNHQEVLNAG   64 (622)
Q Consensus         3 ~V~~~~fspdg~~la-tg~~dg~v~vwd~~~~~---~~~--------------~~~~~l~~~~~d~~i~~w~~~~~~~~~   64 (622)
                      .+.+++|++.+..|. +=...+.|..++.....   ...              ..+++.++-...+.|.+.+..+...  
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--  118 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--  118 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--
Confidence            457899998666555 43446788888876542   110              1234445555667777777653211  


Q ss_pred             CCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccc
Q psy2110          65 KDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                              +.+. ...-.....+++.|.+.+|..+... .+.|...+++...........-                 ..
T Consensus       119 --------~~l~-~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~-----------------~~  172 (619)
T 3s94_A          119 --------KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-----------------YW  172 (619)
T ss_dssp             --------EEEE-CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-----------------SS
T ss_pred             --------EEEE-eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC-----------------CC
Confidence                    0110 0112234568999876666555422 2566666665322222222111                 12


Q ss_pred             eeEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEE
Q psy2110         144 AVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD  222 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd  222 (622)
                      ...+++++++..|+.+. ..+.|...++.............           .....+++..+ .+.++-...+.|...|
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~-----------~~P~gi~~~~~-~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL-----------PHPFALTLFED-ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCC-----------CCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence            25899999877666554 45678888876533222221110           11235566554 3333333467788888


Q ss_pred             cCCCceEEEeccCC-------------------------cCeeEEEE-----------cC-------CC--------CEE
Q psy2110         223 FLTRGIAKIISAHM-------------------------HPVCSISW-----------SR-------NG--------YKI  251 (622)
Q Consensus       223 ~~~~~~~~~~~~~~-------------------------~~v~~~~~-----------s~-------~~--------~~l  251 (622)
                      ..+++....+....                         +....+++           .|       |+        .+|
T Consensus       241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L  320 (619)
T 3s94_A          241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL  320 (619)
T ss_dssp             SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred             CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence            76654332221100                         01111111           11       11        123


Q ss_pred             EEEeCCCcEEEEECCCCcEEE-EEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE
Q psy2110         252 ISASTDNNVCIWDVLTGECEQ-KYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF  328 (622)
Q Consensus       252 ~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  328 (622)
                      +.+. .+.|+..++....... .+.  .-..+.+++|.+.+..++++-...+.|+.+++........+...-.....+++
T Consensus       321 l~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv  399 (619)
T 3s94_A          321 LLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV  399 (619)
T ss_dssp             EEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             EEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence            3332 3456666766543211 111  22457789999988878888777888998888764333333333345668899


Q ss_pred             eeCCC-EEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccccCCCCCCCc
Q psy2110         329 DRRGQ-HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG--DRLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       329 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                      +..+. .+++-...+.|.+.++........+...-...++|++.|...+|..+..  ...|...+++.        ..  
T Consensus       400 D~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG--------~~--  469 (619)
T 3s94_A          400 DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG--------SD--  469 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------CS--
T ss_pred             ecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC--------Cc--
Confidence            87554 5555556789999998754433333334456789999997555555543  35676666652        11  


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEE
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVS  483 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~  483 (622)
                      ...+.. ..-.....++++++++.|+.+....+.|..+++........+.+.... ...++...+  .|+.+.  .+.|.
T Consensus       470 ~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~-P~glav~~~--~ly~tD~~~~~I~  545 (619)
T 3s94_A          470 RVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-IFGFTLLGD--YVYWTDWQRRSIE  545 (619)
T ss_dssp             CEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCS-SCCEEEETT--EEEEECTTSSCEE
T ss_pred             cEEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCC-cEEEEEECC--EEEEeecCCCeEE
Confidence            111111 011223568999988888888776788999998654433333332222 445665433  555555  45555


Q ss_pred             Eeec
Q psy2110         484 LWAQ  487 (622)
Q Consensus       484 iw~~  487 (622)
                      .-+.
T Consensus       546 ~~~k  549 (619)
T 3s94_A          546 RVHK  549 (619)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            4444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=115.07  Aligned_cols=205  Identities=11%  Similarity=0.099  Sum_probs=114.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCC-ceE-
Q psy2110         247 NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD-LSI-  324 (622)
Q Consensus       247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~-  324 (622)
                      ++..+++++.|+.|+.||..+|+.+..+.. ..+.+..+..++. ++++++.++.++.||..+++.+..+..+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577899999999999999999999988876 5555555555554 566778899999999987766544433211 000 


Q ss_pred             EEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110         325 VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE  404 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  404 (622)
                      ...+. .+..+++++.++.++.||..+|+.+..+..+.    ...++|++..+++++.++.|+.||..+         .+
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t---------G~  151 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT---------RE  151 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS---------SS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC---------CC
Confidence            01111 34567888889999999999999888776553    234567888899999999999999873         22


Q ss_pred             cceeeeccccceeeeeEEEcCCC---CeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCE
Q psy2110         405 PIQKLQDLVNKTMWKKCCFSGDG---EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPI  473 (622)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~  473 (622)
                      .+..+...    .....++++++   ..+++++. ++.|+.||..+|+.+-.+.... ..+....+++++..
T Consensus       152 ~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~~-pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          152 LRWNATYF----DYAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYAS-PVVAFYVWQREGLR  217 (369)
T ss_dssp             CCCEEEEE----EECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECSS-CEEEEEECTTSSCE
T ss_pred             EEEeEecc----cccCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCCC-ceEEEEEecCCceE
Confidence            22222211    11223444432   45666776 8999999999999887766433 22344556666653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=1.7e-11  Score=120.84  Aligned_cols=204  Identities=14%  Similarity=0.075  Sum_probs=114.7

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~  231 (622)
                      ++.++++++.||.|+.||..+|+.+..+..  ..           +.+..+..++..+++++.++.|+.||..+++.+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-----------~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-----------VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-----------SCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-----------ceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence            577899999999999999999988776654  11           12223445677787778999999999999988766


Q ss_pred             eccCCcC-ee-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC
Q psy2110         232 ISAHMHP-VC-SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG  309 (622)
Q Consensus       232 ~~~~~~~-v~-~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  309 (622)
                      +..+... +. +..+. ++..+++++.++.|+.||..+|+.+..+.....   ..++|++. .+++++.++.++.||.++
T Consensus        75 ~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~-~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           75 LPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTS-LLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS
T ss_pred             eeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCC-EEEEEecCCEEEEEECCC
Confidence            6543211 11 11111 345678888899999999999998877764432   34556554 566777889999999988


Q ss_pred             CceeecccCCCCceEEEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCC
Q psy2110         310 DHQIVPIDEDSDLSIVASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN  375 (622)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  375 (622)
                      ++.+..+....  ....+++.+.   ..+++++.+|.++.||..+++.+.++......+....++++|.
T Consensus       150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            76654433211  1112233322   5677788999999999999998887774433333334455554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.07  E-value=3.1e-05  Score=81.09  Aligned_cols=427  Identities=9%  Similarity=-0.010  Sum_probs=232.5

Q ss_pred             cceEEEEccCCcEE-EeccCCCeEEEEecccccee----------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           3 LSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELK----------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         3 ~V~~~~fspdg~~l-atg~~dg~v~vwd~~~~~~~----------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      .+.+++|++++..| .+-..++.|..++.......                ...+++..+-...+.|.+.++.+...   
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~---  114 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR---  114 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---
Confidence            45689999865555 45456788888887653211                01233444555566677766643211   


Q ss_pred             CCCCccchhhhhhccccceeEEEEcCCCCEEEEecC-CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccce
Q psy2110          66 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA  144 (622)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~-~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v  144 (622)
                             ..+. ...-.....+++.|...+|..... ..+.|...++...........- .                 ..
T Consensus       115 -------~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~-~-----------------~P  168 (628)
T 4a0p_A          115 -------QVLV-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNV-G-----------------RA  168 (628)
T ss_dssp             -------EEEE-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSC-S-----------------SE
T ss_pred             -------EEEE-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCC-C-----------------Cc
Confidence                   0110 012233467999986666655442 1367877777644333323221 1                 22


Q ss_pred             eEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEc
Q psy2110         145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDF  223 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~  223 (622)
                      ..+++++++..|+.+. ..+.|...++..... ..+....           .....+++.. +.++++-...+.|...|.
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l-----------~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDL-----------PHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECC-----------SCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccC-----------CCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            5999999877776664 457888888865433 2222111           1245666654 344444445778888886


Q ss_pred             CCCceEEEeccCC------------------------cCeeEEEE----------c-------CCC-------CEEEEEe
Q psy2110         224 LTRGIAKIISAHM------------------------HPVCSISW----------S-------RNG-------YKIISAS  255 (622)
Q Consensus       224 ~~~~~~~~~~~~~------------------------~~v~~~~~----------s-------~~~-------~~l~s~~  255 (622)
                      .+++....+....                        +....++.          .       +|+       .+|+.+.
T Consensus       236 ~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~  315 (628)
T 4a0p_A          236 TSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ  315 (628)
T ss_dssp             TTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE
T ss_pred             CCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec
Confidence            6654332221110                        01111111          1       111       1222222


Q ss_pred             CCCcEEEEECCCCcE-EEEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC------CCCceEEE
Q psy2110         256 TDNNVCIWDVLTGEC-EQKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE------DSDLSIVA  326 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~  326 (622)
                       ...|+-..+..... ...+.  .-..+.++.|.+.+..++.+-...+.|+.+++........+..      .......+
T Consensus       316 -~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl  394 (628)
T 4a0p_A          316 -KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL  394 (628)
T ss_dssp             -TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE
T ss_pred             -cceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE
Confidence             23344333332211 01111  2245788999998888888877788888888765432222221      23457789


Q ss_pred             EEeeCCCEEE-EEecCCeEEEEeCCCccEEEEE-ecCCCCEEEEEEcCC-CCEEEEEeCCC--cEEEEecccccccCCCC
Q psy2110         327 SFDRRGQHVV-TGNSKGKVLVLSCPALELKASF-KASTTAIKSIEFARR-GNCLLVNTGDR--LIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       327 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~~d~--~i~i~d~~~~~~~~~~~  401 (622)
                      +++..++.|+ +-+..+.|.+.++. ++....+ ...-...++|++.|. |.++.+-....  .|...+++.        
T Consensus       395 AvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG--------  465 (628)
T 4a0p_A          395 SIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG--------  465 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS--------
T ss_pred             EeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC--------
Confidence            9998866554 55667889999986 4544443 334566899999994 54444433222  566666552        


Q ss_pred             CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cCCCCceeEEEECCCCCEEEEEe--
Q psy2110         402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GTKGELLLDVVWHPVRPIIASIS--  478 (622)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~s~~--  478 (622)
                      .  ....+... .-.....++++++++.|+.+....+.|...++... ..+.+. ..... ...++...  ..|+.+.  
T Consensus       466 ~--~~~~l~~~-~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~-P~glav~~--~~ly~tD~~  538 (628)
T 4a0p_A          466 T--EREVLFFS-GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQ-PVGLTVFE--NWLYWIDKQ  538 (628)
T ss_dssp             C--SCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSC-EEEEEEET--TEEEEEETT
T ss_pred             C--CcEEEEec-cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCC-cEEEEEEC--CEEEEEECC
Confidence            1  11111110 11122568999998888888776789999998644 344444 33333 67777654  3444444  


Q ss_pred             CCcEEEeecC
Q psy2110         479 SGVVSLWAQN  488 (622)
Q Consensus       479 dg~v~iw~~~  488 (622)
                      .+.|...+..
T Consensus       539 ~~~i~~~~k~  548 (628)
T 4a0p_A          539 QQMIEKIDMT  548 (628)
T ss_dssp             TTEEEEEETT
T ss_pred             CCeEEEEECc
Confidence            4556555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.04  E-value=3.8e-05  Score=80.37  Aligned_cols=366  Identities=9%  Similarity=-0.062  Sum_probs=193.2

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce-EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-Eee
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGC  160 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~  160 (622)
                      ....++|++.+..|..+....+.|..+++..... ...+......                 +..+++.+.+..|+ +-.
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~-----------------P~GlAvD~~~~~ly~~d~  103 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS-----------------PDGLACDWLGEKLYWTDS  103 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSC-----------------EEEEEEETTTTEEEEEET
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCC-----------------cCeEEEEecCCEEEEEeC
Confidence            3457899998887777665557898888875432 2222221112                 24899998665555 445


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcC
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      ..+.|.+.++........+....           .....+++.|.+..|+.+..  .+.|...++............-..
T Consensus       104 ~~~~I~v~~~dG~~~~~l~~~~l-----------~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~  172 (619)
T 3s94_A          104 ETNRIEVSNLDGSLRKVLFWQEL-----------DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW  172 (619)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSC-----------SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCC-----------CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence            67889999987543222221111           12467899997666666553  356777776543333333333456


Q ss_pred             eeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeec-
Q psy2110         239 VCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP-  315 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-  315 (622)
                      .+.|++++++..|+.+.. .+.|...|+.......... ......++++..+  .++++-...+.|...|..++..... 
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence            789999987777766643 4678888876533222111 0111123333322  3333333344444444322110000 


Q ss_pred             --------------------------------------------------------------------------------
Q psy2110         316 --------------------------------------------------------------------------------  315 (622)
Q Consensus       316 --------------------------------------------------------------------------------  315 (622)
                                                                                                      
T Consensus       251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~  330 (619)
T 3s94_A          251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRR  330 (619)
T ss_dssp             CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEE
T ss_pred             ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEE
Confidence                                                                                            


Q ss_pred             ------------cc-CCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-
Q psy2110         316 ------------ID-EDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-  380 (622)
Q Consensus       316 ------------~~-~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-  380 (622)
                                  +. ..-.....++|++.+..|+.+ ...+.|+.+++........+...-....++++.+.+..|+.+ 
T Consensus       331 i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD  410 (619)
T 3s94_A          331 ISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD  410 (619)
T ss_dssp             EESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred             EecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence                        00 001112344454433333322 234455555554322222222222456688888755545544 


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC-CCCeEEEEECCCCeeEEEEecCCC
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA-RQHALYIWEKSVGNLVKILHGTKG  459 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~  459 (622)
                      +..+.|.+.++..        .  ....+... .-.....+++.|...+|+.+.. ..+.|+..++............-.
T Consensus       411 ~~~~~I~v~~~~G--------~--~~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~  479 (619)
T 3s94_A          411 TGTDRIEVTRLNG--------T--MRKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG  479 (619)
T ss_dssp             TTTTEEEEEETTS--------C--SCEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             CCCCcEEEEeCCC--------C--eEEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCC
Confidence            5567898888873        1  11122111 1122357899997656655543 236787777764333322333333


Q ss_pred             CceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110         460 ELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV  490 (622)
Q Consensus       460 ~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~  490 (622)
                      . .+.++++++...|+.+.  .+.|...++++.
T Consensus       480 ~-P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          480 W-PNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             C-EEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             C-CeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            3 88999999888888776  577888888654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.04  E-value=4.7e-07  Score=94.22  Aligned_cols=307  Identities=12%  Similarity=0.130  Sum_probs=177.9

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..+++++.++.|.-+|..+|+.+-.+.........  ..|......+++  .+..+++++.++.|..+|..+++.+...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR--PCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC--CSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc--cccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence            335555555445888999999877666543321110  000000011122  3457788888999999999999998776


Q ss_pred             ccCCc----Cee-EEEEcC---CCC-EEEEEe------CCCcEEEEECCCCcEEEEEeCCCCe-----------------
Q psy2110         233 SAHMH----PVC-SISWSR---NGY-KIISAS------TDNNVCIWDVLTGECEQKYRFPSPI-----------------  280 (622)
Q Consensus       233 ~~~~~----~v~-~~~~s~---~~~-~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~v-----------------  280 (622)
                      .....    .+. +.....   +|+ .+++++      .++.|+.+|..+|+.+-........                 
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence            53321    111 111111   233 555554      3789999999999988766532100                 


Q ss_pred             -------------------------EEEEEeCCCCeEEEEee------------C-------C----CcEEEEEecCCce
Q psy2110         281 -------------------------LKVQFHPRNDHMFLVCP------------M-------R----HAAVLVDTDGDHQ  312 (622)
Q Consensus       281 -------------------------~~~~~~~~~~~~~~~~~------------~-------~----~~i~~~d~~~~~~  312 (622)
                                               ..+++.|....+++..+            .       +    +.+..+|..+++.
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence                                     12455566554444442            1       2    5788999988887


Q ss_pred             eecccC--CC--------CceEEEEEe-eCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCC--CE-----------
Q psy2110         313 IVPIDE--DS--------DLSIVASFD-RRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTT--AI-----------  365 (622)
Q Consensus       313 ~~~~~~--~~--------~~~~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i-----------  365 (622)
                      +..+..  |.        ..+ -+... .+|+   .++.++.+|.++++|..+++++..+.....  ..           
T Consensus       304 ~W~~q~~~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~  382 (582)
T 1flg_A          304 KWFYQHTPNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             EEEEeCCCCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence            766543  21        111 11221 4674   788899999999999999998877654320  00           


Q ss_pred             --------------------------------EEEEEcCCCCEEEEEeC-------------------------------
Q psy2110         366 --------------------------------KSIEFARRGNCLLVNTG-------------------------------  382 (622)
Q Consensus       366 --------------------------------~~~~~s~~~~~l~~~~~-------------------------------  382 (622)
                                                      ..++++|+...+++...                               
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD  462 (582)
T ss_dssp             ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred             EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence                                            13466666555555432                               


Q ss_pred             --CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCC
Q psy2110         383 --DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       383 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                        ++.|..||+.+         .+.+-+.....   ....-.....|.+++.++. |+.++.||.++|+.+-.++...+-
T Consensus       463 ~~~G~l~A~D~~t---------G~~~W~~~~~~---~~~~g~~~tagglvf~g~~-dg~l~A~D~~tG~~lW~~~~~~g~  529 (582)
T 1flg_A          463 DHVGSLRAMDPVS---------GKVVWEHKEHL---PLWAGVLATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTGSGI  529 (582)
T ss_dssp             SCSEEEEEECTTT---------CCEEEEEEESS---CCCSCCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CCcceEEEEECCC---------CCEEEEecCCC---CCcccceEeCCCEEEEECC-CCcEEEEECCCCCEEEEecCCCCc
Confidence              35566666652         12222222111   1111112224667778876 899999999999999988876542


Q ss_pred             ceeEEEECCCCC-EEEEE
Q psy2110         461 LLLDVVWHPVRP-IIASI  477 (622)
Q Consensus       461 ~v~~v~~sp~~~-~l~s~  477 (622)
                      .-.-+.|..+|+ ++++.
T Consensus       530 ~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          530 VSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             ccCceEEEECCEEEEEEE
Confidence            122366767776 44433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=1.9e-07  Score=97.14  Aligned_cols=283  Identities=13%  Similarity=0.095  Sum_probs=171.2

Q ss_pred             CCEEEEecCCCCeEEEEEc-CCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC
Q psy2110          93 GEYVCAGSARQHALYIWEK-SVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  171 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~  171 (622)
                      +..|++++..++.|+-+|. .+|+.+..+......-.      .....|......++.  ++..+++++.|+.|..+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~  133 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST------KAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAK  133 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG------GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc------cccccccccccccEE--ECCEEEEEeCCCEEEEEECC
Confidence            3445555541378999999 89999988764332100      000000000011222  35678888889999999999


Q ss_pred             CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110         172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP-------  238 (622)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------  238 (622)
                      +|+.+-.......... ..+.. ..    ... + ..+++++.      ++.|+.+|..+++.+..+......       
T Consensus       134 tG~~~W~~~~~~~~~~-~~~~~-~P----~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p  205 (571)
T 2ad6_A          134 TGKINWEVEVCDPKVG-STLTQ-AP----FVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAK  205 (571)
T ss_dssp             TCCEEEEEECCCGGGT-CBCCS-CC----EEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             CCCEEEEecCCCCCcc-ceecc-CC----EEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCc
Confidence            9987765543221100 00000 01    111 3 35556654      789999999999988776532110       


Q ss_pred             -------------------------------eeEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCcEE
Q psy2110         239 -------------------------------VCSISWSRNGYKIISASTD----------------NNVCIWDVLTGECE  271 (622)
Q Consensus       239 -------------------------------v~~~~~s~~~~~l~s~~~d----------------~~i~iwd~~~~~~~  271 (622)
                                                     ...+++.++...++.+..+                +.|..+|..+|+.+
T Consensus       206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~  285 (571)
T 2ad6_A          206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK  285 (571)
T ss_dssp             TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE
Confidence                                           0235666666667666532                25999999999998


Q ss_pred             EEEeCCC----------CeEEEEEeCCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC-------------Cce---
Q psy2110         272 QKYRFPS----------PILKVQFHPRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS-------------DLS---  323 (622)
Q Consensus       272 ~~~~~~~----------~v~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~---  323 (622)
                      ..++...          ...-+...++++  .+++.+..++.++++|..+++.+.......             ..+   
T Consensus       286 W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~  365 (571)
T 2ad6_A          286 WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDP  365 (571)
T ss_dssp             EEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECG
T ss_pred             EEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccc
Confidence            8876321          111122224564  466778889999999998887665433211             001   


Q ss_pred             -----------------------EEEEEeeCCCEEEEEe-------------------------------------cCCe
Q psy2110         324 -----------------------IVASFDRRGQHVVTGN-------------------------------------SKGK  343 (622)
Q Consensus       324 -----------------------~~~~~~~~~~~l~~~~-------------------------------------~dg~  343 (622)
                                             ..++++|+..++++..                                     .+|.
T Consensus       366 ~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~  445 (571)
T 2ad6_A          366 EFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQ  445 (571)
T ss_dssp             GGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEE
T ss_pred             ccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCe
Confidence                                   2357888877777653                                     3478


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |..||+.+++.+.++.... .+.+..+...+..+++++.|+.|+.+|.+
T Consensus       446 l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          446 IRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            9999999999888776432 22222233345677788999999999988

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.03  E-value=5.2e-08  Score=87.77  Aligned_cols=193  Identities=9%  Similarity=0.078  Sum_probs=135.2

Q ss_pred             eEEEeccCCc--CeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         228 IAKIISAHMH--PVCSISWSRNGYKIISASTDN--NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       228 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .++++ .|..  ....+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..+.........++++.++++.-.++.+.
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            34455 3443  34789998 676666776665  899999999999999987776665555556778888888899999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEE
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLL  378 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~  378 (622)
                      ++|..+.+.+..+......   ..++++++.|+....++.|.++|..+.+.+.++....     ..++.+.|. +|+.++
T Consensus       111 v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            9999998888777654322   3344678888777778899999999999888877421     345667887 676444


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeec--c--------ccceeeeeEEEcCCCCeEEEeeC
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--L--------VNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      ..-.++.|.+.|..+.         +.+..+..  .        ......+.++|+|+++.|+..+.
T Consensus       187 n~w~~~~I~vIDp~tG---------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETG---------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTC---------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEccCCeEEEEECCCC---------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            4445778999998732         22222221  1        11123467899999887777663

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.00  E-value=1.2e-07  Score=91.59  Aligned_cols=242  Identities=8%  Similarity=0.018  Sum_probs=152.2

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCC-C---ccc-----ccccccceEEEEECC-CCCEEEEEeC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHP-E---FDG-----ALDCISLAVTCAFNK-RGTLLAVGCN  214 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~---~~~-----~~~~~~~v~~~~~s~-~g~~l~~~~~  214 (622)
                      .++++.+++++++++..++.|..|+..++... .+...... .   ..+     .......+..+++.+ +|+ |+++..
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            47899999998888888899999987765332 22110000 0   000     000112467889998 555 555555


Q ss_pred             CCeEEEEEcCCCceEEEecc-----CCcCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcEE
Q psy2110         215 DGRIVLWDFLTRGIAKIISA-----HMHPVCSISWSR-NGYKIISAST-----------------DNNVCIWDVLTGECE  271 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~s~~~-----------------d~~i~iwd~~~~~~~  271 (622)
                      .+.|..++..++... .+..     .......+++.+ +|+..++-..                 ++.|..||..+++..
T Consensus       100 ~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          100 YYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            556888887655322 2211     113468899999 9976665432                 367889998777654


Q ss_pred             EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc--eeecccCCCCceEEEEEeeCCCEEEEEec---------
Q psy2110         272 QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH--QIVPIDEDSDLSIVASFDRRGQHVVTGNS---------  340 (622)
Q Consensus       272 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------  340 (622)
                      ...........++++|+++.++++-...+.|..+++....  ....+..... ...++++++|+++++...         
T Consensus       179 ~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~  257 (322)
T 2fp8_A          179 LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGR  257 (322)
T ss_dssp             EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred             EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCC
Confidence            4333223456799999998777777778899999987521  1111111122 677899999987776544         


Q ss_pred             -CCeEEEEeCCCccEEEEEecCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         341 -KGKVLVLSCPALELKASFKAST----TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       341 -dg~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                       .+.|..+|. .++.+..+....    ..++++++ .+++++++....+.|.++++.
T Consensus       258 ~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          258 VDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence             467888986 477777776442    34666766 355545454567789998876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=5.7e-08  Score=87.53  Aligned_cols=184  Identities=8%  Similarity=0.107  Sum_probs=129.4

Q ss_pred             eEEEEcCCCCEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCC
Q psy2110          85 KKCCFSGDGEYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CND  162 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~d  162 (622)
                      ..+.|+ ++.+..+.+.+ ...|+++|+.+++.+..+.......                  .....+++..|... -.+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F------------------geGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF------------------GEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC------------------EEEEEEETTEEEEEESSS
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc------------------eeEEEEeCCEEEEEEeeC
Confidence            368888 66555555533 2489999999999998887544332                  32333345555544 457


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC--C---c
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH--M---H  237 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---~  237 (622)
                      +.+.+||..+.+.+..+......            .  .+.++++.|+.+..++.|.++|..+.+.+..+.-.  .   .
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~eG------------~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGEG------------W--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC------------C--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             CEEEEEECccCcEEEEEECCCCc------------e--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            89999999999888877653211            1  23356777777766788999999999888776532  2   3


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------------CCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-------------SPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                      .++.+.|. +|+..+..-.++.|.+.|..+++.+..+...             .-.+.++++|+++.++++|-.=..+
T Consensus       173 ~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~  249 (262)
T 3nol_A          173 ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV  249 (262)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence            34567886 6765544446789999999999999988742             2458899999999999888544433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.98  E-value=3.3e-07  Score=95.08  Aligned_cols=269  Identities=13%  Similarity=0.067  Sum_probs=161.9

Q ss_pred             EEEcCCCCE----EEEecCCCCeEEEEEcCCCceEEEEeccCc----ceeEEEEeecCccccccceeEEEEcCCCCEEEE
Q psy2110          87 CCFSGDGEY----VCAGSARQHALYIWEKSVGNLVKILHGTKG----ELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV  158 (622)
Q Consensus        87 ~~~sp~~~~----l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s  158 (622)
                      ++++|.+..    |++++.+ +.|+.+|..+|+.+........    .+.                ..... .++ .+++
T Consensus       111 ~av~p~~g~~~~rV~v~t~d-g~l~AlDa~TG~~~W~~~~~~~~~~~~~~----------------ssP~v-~~g-~V~v  171 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLD-GNVAALNAETGETVWKVENSDIKVGSTLT----------------IAPYV-VKD-KVII  171 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTT-SEEEEEETTTCCEEEEEECCCGGGTCBCC----------------SCCEE-ETT-EEEE
T ss_pred             eEEEecCCcceeEEEEEcCC-CEEEEEECCCCCEEEeecCCCCCccceee----------------cCCEE-ECC-EEEE
Confidence            455544444    7777654 8999999999999887654321    110                01111 134 4555


Q ss_pred             ee------CCCcEEEEecCCcccccccccccCCCc------------------------c-cccc-cccce-EEEEECCC
Q psy2110         159 GC------NDGRIVLWDFLTRGIAKIISAHMHPEF------------------------D-GALD-CISLA-VTCAFNKR  205 (622)
Q Consensus       159 ~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~------------------------~-~~~~-~~~~v-~~~~~s~~  205 (622)
                      ++      .+|.|+.+|..+|+.+-.+........                        . .... ....+ ..+++.+.
T Consensus       172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~  251 (599)
T 1w6s_A          172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG  251 (599)
T ss_dssp             CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred             EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence            44      379999999999987765543221100                        0 0000 00000 13466677


Q ss_pred             CCEEEEEeCC----------------CeEEEEEcCCCceEEEeccCCc----------CeeEEEEc-CCC---CEEEEEe
Q psy2110         206 GTLLAVGCND----------------GRIVLWDFLTRGIAKIISAHMH----------PVCSISWS-RNG---YKIISAS  255 (622)
Q Consensus       206 g~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~----------~v~~~~~s-~~~---~~l~s~~  255 (622)
                      ..+++.+..+                +.|..+|..+++.+..++....          ++. +... .+|   ..++.++
T Consensus       252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~  330 (599)
T 1w6s_A          252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD  330 (599)
T ss_dssp             TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred             CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence            7788877655                3799999999999877764322          111 2222 467   4677788


Q ss_pred             CCCcEEEEECCCCcEEEEEeCCC--------------Ce--------------------------EEEEEeCCCCeEEEE
Q psy2110         256 TDNNVCIWDVLTGECEQKYRFPS--------------PI--------------------------LKVQFHPRNDHMFLV  295 (622)
Q Consensus       256 ~d~~i~iwd~~~~~~~~~~~~~~--------------~v--------------------------~~~~~~~~~~~~~~~  295 (622)
                      .+|.++++|..+|+.+.......              ++                          ..++++|+...+++.
T Consensus       331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~  410 (599)
T 1w6s_A          331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG  410 (599)
T ss_dssp             TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred             CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence            99999999999999887765321              11                          135566665543332


Q ss_pred             e--------------------------------e------CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110         296 C--------------------------------P------MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       296 ~--------------------------------~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (622)
                      .                                +      ..+.+..||+.+++.+........ ...-.....+..++.
T Consensus       411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagg~vf~  489 (599)
T 1w6s_A          411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA-VWGGTMATAGDLVFY  489 (599)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEE
T ss_pred             ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC-ccCcceEecCCEEEE
Confidence            1                                1      235677888887766655432211 111122345778888


Q ss_pred             EecCCeEEEEeCCCccEEEEEecCCCCE-EEEEEcCCCCE
Q psy2110         338 GNSKGKVLVLSCPALELKASFKASTTAI-KSIEFARRGNC  376 (622)
Q Consensus       338 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~  376 (622)
                      ++.||.++.||.++++.+.+++.....+ .-+.+..+|+.
T Consensus       490 gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          490 GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            9999999999999999999887543222 22445566664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.94  E-value=8.7e-07  Score=84.63  Aligned_cols=222  Identities=12%  Similarity=0.054  Sum_probs=140.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC--CeEEEEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND--GRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d--g~i~iwd  222 (622)
                      ..++|+++++++++-..++.|..|+.... ....+...            ..+..+++.++|+++++....  ..|..++
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~------------~~p~gia~~~dG~l~vad~~~~~~~v~~~d  101 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE------------GKVSGLAFTSNGDLVATGWNADSIPVVSLV  101 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS------------SEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC------------CCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence            48999999987777667889999987653 22222111            236789999999966655432  2477777


Q ss_pred             cCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEE-------eC-C--CCeEEEEEeCCCC
Q psy2110         223 FLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC-EQKY-------RF-P--SPILKVQFHPRND  290 (622)
Q Consensus       223 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-------~~-~--~~v~~~~~~~~~~  290 (622)
                      ..+++...... ........++..+++..+++-..++.|+++|..+++. +...       .. .  .....+  +|+++
T Consensus       102 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~  179 (306)
T 2p4o_A          102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN  179 (306)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred             CCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence            77776543322 1222335556555554444444578899999876532 1111       00 1  134455  88888


Q ss_pred             eEEEEeeCCCcEEEEEecCCcee---ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE--EEecCCCCE
Q psy2110         291 HMFLVCPMRHAAVLVDTDGDHQI---VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA--SFKASTTAI  365 (622)
Q Consensus       291 ~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i  365 (622)
                      .++++....+.|..+++.....+   ..+.. ......++++++|+++++....+.|.+++.. ++...  .+.......
T Consensus       180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCc
Confidence            88888888899999998742111   11110 1234567899999887777777899999975 65533  333334568


Q ss_pred             EEEEEc---CCCCEEEEEeCC
Q psy2110         366 KSIEFA---RRGNCLLVNTGD  383 (622)
Q Consensus       366 ~~~~~s---~~~~~l~~~~~d  383 (622)
                      ++++|.   |+++.|++++..
T Consensus       258 ~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          258 TAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEEecccCCCCEEEEECCC
Confidence            899998   888888777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.90  E-value=5.4e-07  Score=80.54  Aligned_cols=193  Identities=13%  Similarity=0.111  Sum_probs=133.2

Q ss_pred             eEEEeccCC--cCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         228 IAKIISAHM--HPVCSISWSRNGYKIISASTD--NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       228 ~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .+..+ .|.  .....+.|+. +.++.+.+.+  +.|+.+|+.+++.++.+..+.........+.++.++...-.++.+.
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            34444 344  3466899986 5555555554  4899999999999999987776665555556778888888899999


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEE
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLL  378 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~  378 (622)
                      ++|..+.+.+..+......   ..+.++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+.++
T Consensus        89 v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence            9999998888777654432   2344677777777778899999999999888877432     345677776 565444


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeec-----------cccceeeeeEEEcCCCCeEEEeeC
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----------LVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      ..-.+..|.+.|..+.         +.+..+..           .......+.++++|+++.|+..+.
T Consensus       165 nvw~s~~I~vIDp~tG---------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPASG---------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTTC---------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEECCCC---------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4445778888888742         22222211           011224467899998777766653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.89  E-value=1.8e-06  Score=82.42  Aligned_cols=226  Identities=9%  Similarity=0.001  Sum_probs=137.6

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC--CcEEEEEecCCceee
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR--HAAVLVDTDGDHQIV  314 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~  314 (622)
                      .....++|+++|+.+++-..++.|..||... +....+.....+..+++.++++ ++++....  ..+..++..++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEE
Confidence            4567899999998666666788999999765 4555555667788999999987 45544332  246666765554322


Q ss_pred             ccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE-EEEEe---------cCCCCEEEEEEcCCCCEEEEEe-C
Q psy2110         315 PID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL-KASFK---------ASTTAIKSIEFARRGNCLLVNT-G  382 (622)
Q Consensus       315 ~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~s~~~~~l~~~~-~  382 (622)
                      ... ........++..+++..+++...++.|+++|..+++. +....         ..-...+.+  +++++.|+++. .
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            111 1122334455555554455544688999999876432 21111         111234555  78887776664 5


Q ss_pred             CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEE--EEecCCCC
Q psy2110         383 DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVK--ILHGTKGE  460 (622)
Q Consensus       383 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~  460 (622)
                      .+.|+.|++...      +.......+...   .....++++++|++.++... .+.|.+++.. |+...  .+......
T Consensus       188 ~~~I~~~~~~~~------g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~-~~~V~~~~~~-G~~~~~~~~~~~~~~  256 (306)
T 2p4o_A          188 KMLLLRIPVDST------DKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHI-YNSVVRIAPD-RSTTIIAQAEQGVIG  256 (306)
T ss_dssp             TTEEEEEEBCTT------SCBCCCEEEEES---CCCSSEEEBTTCCEEEECBT-TCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred             CCEEEEEEeCCC------CCCCccEEEecc---CCCCCeEECCCCCEEEEeCC-CCeEEEECCC-CCEEEEeecccccCC
Confidence            778999998731      111111222111   12345799999987665554 7789999975 66533  23322233


Q ss_pred             ceeEEEEC---CCCCEEEEEe
Q psy2110         461 LLLDVVWH---PVRPIIASIS  478 (622)
Q Consensus       461 ~v~~v~~s---p~~~~l~s~~  478 (622)
                       +++++|.   |++..|+.+.
T Consensus       257 -p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          257 -STAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             -EEEEEECCSTTTTTEEEEEE
T ss_pred             -ceEEEEecccCCCCEEEEEC
Confidence             8999998   8888776655

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.88  E-value=3e-06  Score=88.13  Aligned_cols=314  Identities=14%  Similarity=0.097  Sum_probs=181.1

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCc
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR  173 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~  173 (622)
                      ..|++++.. +.|+.+|..+|+.+..+........        ...|......+++  .+..++.++.++.|..+|..+|
T Consensus        69 g~vyv~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~--------~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           69 GVIYVTASY-SRLFALDAKTGKRLWTYNHRLPDDI--------RPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TEEEEEETT-TEEEEEESSSCCEEEEEECCCCTTC--------CCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSC
T ss_pred             CEEEEEcCC-CCEEEEECCCCcEEEEEcCCCCccc--------ccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCC
Confidence            344444433 3499999999999988865543210        0000000012222  3557888888999999999999


Q ss_pred             ccccccccccCCCcccccccccceEEEEEC-CCCC-EEEEEeC------CCeEEEEEcCCCceEEEeccCCcC-------
Q psy2110         174 GIAKIISAHMHPEFDGALDCISLAVTCAFN-KRGT-LLAVGCN------DGRIVLWDFLTRGIAKIISAHMHP-------  238 (622)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~-~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------  238 (622)
                      +.+-.......... ..+.. ..+  +.=. .+|+ .+++++.      ++.|+.+|..+++.+.........       
T Consensus       138 ~~~W~~~~~~~~~~-~~~~~-sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~  213 (582)
T 1flg_A          138 KVVWKKKFADHGAG-YTMTG-APT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK  213 (582)
T ss_dssp             CEEEEEECSCGGGT-CBCCS-CCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE
T ss_pred             CEEeeecCCCCCcC-ccccc-CCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCc
Confidence            87765543221100 00000 111  1111 1233 5656543      789999999999988765421100       


Q ss_pred             ----------------------------------eeEEEEcCCCCEEEEEeC--------------------C----CcE
Q psy2110         239 ----------------------------------VCSISWSRNGYKIISAST--------------------D----NNV  260 (622)
Q Consensus       239 ----------------------------------v~~~~~s~~~~~l~s~~~--------------------d----~~i  260 (622)
                                                        -..+++.++...++.+..                    |    +.|
T Consensus       214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v  293 (582)
T 1flg_A          214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQ  293 (582)
T ss_dssp             EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEE
T ss_pred             ccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceE
Confidence                                              013456666677776653                    2    579


Q ss_pred             EEEECCCCcEEEEEeCC-----------CCeEEEEEe-CCCC--eEEEEeeCCCcEEEEEecCCceeecccCCC------
Q psy2110         261 CIWDVLTGECEQKYRFP-----------SPILKVQFH-PRND--HMFLVCPMRHAAVLVDTDGDHQIVPIDEDS------  320 (622)
Q Consensus       261 ~iwd~~~~~~~~~~~~~-----------~~v~~~~~~-~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------  320 (622)
                      ..+|..+|+.+-.++..           .++. +... .+++  .+++.++.++.++++|..+++.+.......      
T Consensus       294 ~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  372 (582)
T 1flg_A          294 VGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWAS  372 (582)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEE
T ss_pred             EEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccc
Confidence            99999999998887632           1111 1221 3554  467788899999999998876654432211      


Q ss_pred             -------C---------------------c-----------eEEEEEeeCCCEEEEEe----------------------
Q psy2110         321 -------D---------------------L-----------SIVASFDRRGQHVVTGN----------------------  339 (622)
Q Consensus       321 -------~---------------------~-----------~~~~~~~~~~~~l~~~~----------------------  339 (622)
                             .                     .           -..++++|+...+++..                      
T Consensus       373 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  452 (582)
T 1flg_A          373 HIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLG  452 (582)
T ss_dssp             EECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             cccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceec
Confidence                   0                     0           01245666655554432                      


Q ss_pred             -----------cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         340 -----------SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       340 -----------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                                 ..|.|..||+.+++.+-+...... +..-.+...+.++++++.|+.++.||.+         ..+.+-+
T Consensus       453 ~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g~~dg~l~A~D~~---------tG~~lW~  522 (582)
T 1flg_A          453 MGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAK---------SGKELWK  522 (582)
T ss_dssp             EEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETT---------TCCEEEE
T ss_pred             cceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEeCCCEEEEECCCCcEEEEECC---------CCCEEEE
Confidence                       257899999999998877764422 2111122246678889999999999998         3344444


Q ss_pred             eeccccceeeeeEEEcCCCC-eEEEee
Q psy2110         409 LQDLVNKTMWKKCCFSGDGE-YVCAGS  434 (622)
Q Consensus       409 ~~~~~~~~~~~~~~~spdg~-~l~~~~  434 (622)
                      ++.... ....-+.|..+|+ ||++.+
T Consensus       523 ~~~~~g-~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          523 FQTGSG-IVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             EECSSC-CCSCCEEEEETTEEEEEEEE
T ss_pred             ecCCCC-cccCceEEEECCEEEEEEEc
Confidence            443211 1112246667776 444433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.88  E-value=4.3e-07  Score=81.76  Aligned_cols=182  Identities=5%  Similarity=-0.053  Sum_probs=129.1

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      ....+.|+ ++.++.+.+.+|.|+++|+.+++.++.+ .+.........++++.++++.-.++.+.++|..+.+.+..+.
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            34688887 4566677777889999999999998888 666665544555677788888889999999999998887776


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCC-----CCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-----TAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .....   ..+.++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+.++..-.+..|.+.|..
T Consensus       134 ~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          134 YSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             CSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred             CCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence            54332   2334678888888888999999999999888877422     245677887 67544444457789999987


Q ss_pred             cccccCCCCCCCcceeeecc-----------ccceeeeeEEEcCCCCeEEEee
Q psy2110         393 EVLNAGKDGDPEPIQKLQDL-----------VNKTMWKKCCFSGDGEYVCAGS  434 (622)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~~~~  434 (622)
                      +         .+.+..+...           ......+.++++|+++.|+..+
T Consensus       210 T---------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          210 T---------GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             T---------CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             C---------CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            3         2233332211           1112446789999876665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=1.2e-06  Score=78.89  Aligned_cols=192  Identities=10%  Similarity=0.107  Sum_probs=129.1

Q ss_pred             cEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEE-EEEecCCeEE
Q psy2110         269 ECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHV-VTGNSKGKVL  345 (622)
Q Consensus       269 ~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~  345 (622)
                      +.++.+.|...  ...+.|+  +..++.+.+.++.++.+|+.+++.+..+ ... ........++++.| +..-.++.+.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEE
Confidence            45566666544  4688887  4678888889999999999998777666 322 22222233344444 4445678999


Q ss_pred             EEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce---eeeeEE
Q psy2110         346 VLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---MWKKCC  422 (622)
Q Consensus       346 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  422 (622)
                      +||..+.+.+.++......   ..++++++.|+.+..++.|.++|..+         .+.+..+.-.....   ..+.+.
T Consensus       120 V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T---------~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDG---------FALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTT---------CCEEEEEECEETTEECCCEEEEE
T ss_pred             EEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCC---------CeEEEEEEeCCCCcccccccccE
Confidence            9999999999999864332   23345788888887788999999873         33444443322222   224456


Q ss_pred             EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC------------CCCceeEEEECCCCCEEEEEe
Q psy2110         423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT------------KGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      |. +|+ |.+.......|.+.|..+|+.+..+...            .....+.+||+|+++.|+..+
T Consensus       188 ~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             Ee-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            66 775 5555544779999999999999887642            223478999999877665555

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=3.4e-05  Score=73.70  Aligned_cols=235  Identities=9%  Similarity=-0.017  Sum_probs=147.8

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC----CcEEEEEe-CCCCeE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLT----GECEQKYR-FPSPIL  281 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~----~~~~~~~~-~~~~v~  281 (622)
                      +|+.+. ...|+..++.+......+.. .....+++|++.+..|+.+. ..+.|..+++..    ......+. .-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344443 35689999988766555543 45678999998766665554 457899999876    22222332 224567


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-C-CeEEEEeCCCccEEEEE-
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-K-GKVLVLSCPALELKASF-  358 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-  358 (622)
                      .+++.+.+..++++-...+.|.++++..................++++|.+..|+.... . +.|..+++.. .....+ 
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence            89999877778888788889999998765433333333455678999987666655543 2 6888888753 333333 


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCC
Q psy2110         359 KASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSAR  436 (622)
Q Consensus       359 ~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~  436 (622)
                      ...-...+.+++++++..|..+. ..+.|..++++.          ...+.+... ........+++.  +..|+.+...
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg----------~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~  227 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  227 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC----------CceEEEeecCCccCCcEEEEEE--CCEEEEEECC
Confidence            23345678999999877777665 467899999872          111222111 011112345663  3455555555


Q ss_pred             CCeEEEEECCCCeeEEEEecC
Q psy2110         437 QHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       437 d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      .+.|..++..+|+.+..+...
T Consensus       228 ~~~V~~~~~~~g~~~~~i~~~  248 (316)
T 1ijq_A          228 NEAIFSANRLTGSDVNLLAEN  248 (316)
T ss_dssp             TTEEEEEETTTCCCCEEEECS
T ss_pred             CCeEEEEeCCCCcceEEEecC
Confidence            789999998888766666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.84  E-value=7.5e-06  Score=79.46  Aligned_cols=241  Identities=9%  Similarity=-0.022  Sum_probs=148.1

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCCCc
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGR  164 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~  164 (622)
                      |.+..+ ..+|+.+..  +.|+..++........+.....+                  ..++|++....|+.+ ...+.
T Consensus        38 C~~~~~-~~~ll~~~~--~~I~~i~~~g~~~~~~~~~~~~~------------------~~l~~d~~~~~ly~~D~~~~~   96 (349)
T 3v64_C           38 CKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLNNLENA------------------IALDFHHRRELVFWSDVTLDR   96 (349)
T ss_dssp             EEESSS-CCEEEEECB--SCEEEECTTSCCEEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTE
T ss_pred             cccccc-CceeEeecc--cceEEEeCCCCeeEEeecCCCce------------------EEEEEeccccEEEEEeccCCc
Confidence            445555 345555442  56888887765554444443333                  489999866655544 45678


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  243 (622)
                      |..+++..+.....+....           .....+++.+.+..| ++-...+.|.+.++........+.........++
T Consensus        97 I~r~~~~g~~~~~~~~~~~-----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C           97 ILRANLNGSNVEEVVSTGL-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             EEEEETTSCSCEEEECSSC-----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred             eEEEecCCCCceEEEeCCC-----------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence            9889887654332222111           123578888765555 4445567899999875543333434445678999


Q ss_pred             EcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110         244 WSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS  320 (622)
Q Consensus       244 ~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  320 (622)
                      +.|.+..|+.+.. . +.|..+++.......... .-.....++++|++..++++-...+.|..+++........+....
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~  245 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL  245 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCC
Confidence            9986666655543 4 678888876543333222 234578999999888888888888899999987654333333333


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      .....+++ ..+..+++-...+.|..++..+++.+..+.
T Consensus       246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            44556666 344455555566777777765665544443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.83  E-value=3.9e-06  Score=82.75  Aligned_cols=242  Identities=9%  Similarity=-0.021  Sum_probs=150.5

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEE-eeCCCc
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGR  164 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~  164 (622)
                      |.+..+ ..+|+.+..  +.|+.+++..+.....+.+...+                  ..++|.+.+..|+. -...+.
T Consensus        81 C~~~~~-~~~l~~~~~--~~I~~i~~~~~~~~~~~~~~~~~------------------~gl~~d~~~~~ly~~D~~~~~  139 (386)
T 3v65_B           81 CKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLNNLENA------------------IALDFHHRRELVFWSDVTLDR  139 (386)
T ss_dssp             EEECSS-CCEEEEECB--SCEEEECTTSCCCEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTE
T ss_pred             ECCccc-cceeEeecC--ccceeeccCCCcEEEEecCCCcc------------------EEEEEecCCCeEEEEeCCCCc
Confidence            334444 344544442  56888888766555544444433                  48999986665554 445678


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccCCcCeeEEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAHMHPVCSIS  243 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  243 (622)
                      |..+++..+.....+....           .....+++.+.+..|+ +-...+.|.+.++........+.........++
T Consensus       140 I~r~~~~g~~~~~~~~~~~-----------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gia  208 (386)
T 3v65_B          140 ILRANLNGSNVEEVVSTGL-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA  208 (386)
T ss_dssp             EEEEETTSCCEEEEECSSC-----------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCCcEEEEeCCC-----------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEE
Confidence            9999887654322222111           1235678887655554 444567888888765443333444445678999


Q ss_pred             EcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110         244 WSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS  320 (622)
Q Consensus       244 ~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  320 (622)
                      +.|.+..|+.+.. . +.|..+++.......... .-.....++++|++..++++-...+.|..+++........+....
T Consensus       209 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~  288 (386)
T 3v65_B          209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL  288 (386)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSC
T ss_pred             EEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCC
Confidence            9987766665543 3 678888877544433333 234578999999888888888888899999987644333333333


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      .....+++ ..+..+++....+.|..++..+++.+..+..
T Consensus       289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            44566777 4455555656677888888666665555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.82  E-value=2.6e-06  Score=76.09  Aligned_cols=193  Identities=10%  Similarity=0.119  Sum_probs=128.1

Q ss_pred             cEEEEEeCCC--CeEEEEEeCCCCeEEEEeeCC--CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE-EecCCe
Q psy2110         269 ECEQKYRFPS--PILKVQFHPRNDHMFLVCPMR--HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT-GNSKGK  343 (622)
Q Consensus       269 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~  343 (622)
                      +.+..+.|+.  -...+.|++  ..++.+.+..  ..++.+|+.+++.+.......... .......++.|+. .-.++.
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEESSSSE
T ss_pred             EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEEeCCEEEEEEeeCCE
Confidence            4566666654  466899986  4567776665  489999999988877665443322 2223334555544 456789


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccce---eeee
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT---MWKK  420 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  420 (622)
                      +.+||..+.+.+.++......   ..++++++.|+.+..++.|.++|..+         .+.+..+.-.....   ..+.
T Consensus        87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t---------~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDT---------LQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTT---------CCEEEEEECEETTEECCCEEE
T ss_pred             EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCC---------CeEEEEEEEccCCccccccee
Confidence            999999999999999865433   33445677777776788999999873         33344443322221   2234


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC------------CCCceeEEEECCCCCEEEEEe
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT------------KGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      +.+. +|+ |.+.......|.+.|..+|+.+..+...            .....+.+||+|+++.|+..+
T Consensus       155 Le~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            4554 665 4444434678999999999999887632            233578999999988776666

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.80  E-value=9e-07  Score=95.67  Aligned_cols=240  Identities=7%  Similarity=-0.020  Sum_probs=134.9

Q ss_pred             eeEEEEc-CCCCEEEEecCCC----CeEEEEEcCCC-ceEE-EEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          84 WKKCCFS-GDGEYVCAGSARQ----HALYIWEKSVG-NLVK-ILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        84 ~~~~~~s-p~~~~l~~~~~~~----~~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      +...+|| |||++||.+...+    ..|+++|+.++ +.+. .+..    +                ...++|+|||+.|
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~----~----------------~~~~~WspDg~~l  235 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG----T----------------NGEIVWGPDHTSL  235 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE----E----------------CSCCEECSSTTEE
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC----c----------------eeeEEEecCCCEE
Confidence            4468999 9999999765432    35999999988 6321 0111    1                1377999999988


Q ss_pred             EEeeCC-----CcEEEEecCCccccc--ccccccCCCcccccccccceEEEEECCCCCEEEEEeC---CCeEEEEEcCCC
Q psy2110         157 AVGCND-----GRIVLWDFLTRGIAK--IISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGRIVLWDFLTR  226 (622)
Q Consensus       157 ~s~~~d-----g~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iwd~~~~  226 (622)
                      +....+     ..|.++++.++....  .+.....          .....+.|+|||++|+..+.   ...|+++|+.++
T Consensus       236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----------~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----------LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----------TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----------ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            877665     257777877654221  1111100          12467899999998887653   346888898775


Q ss_pred             c-eE--EEe-ccCCcCeeEEEEcCCCCEEEEEeC-C----CcEEEEECCCC-cEEE-EEeCCCCeEEEEEeCCCCeEEEE
Q psy2110         227 G-IA--KII-SAHMHPVCSISWSRNGYKIISAST-D----NNVCIWDVLTG-ECEQ-KYRFPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       227 ~-~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~-d----~~i~iwd~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~~~  295 (622)
                      . ..  +.+ ........++.|+. |..|+..+. +    ..|..+++.++ +... .+.+...+.--.+.+.+..++++
T Consensus       306 ~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~  384 (751)
T 2xe4_A          306 NAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA  384 (751)
T ss_dssp             TTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE
T ss_pred             CCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE
Confidence            2 22  333 33445556666554 555554443 3    25777787653 3233 34444333323344456778888


Q ss_pred             eeCCCcEE--EEEe-------cCCceeecccCCC-CceEEEEE----eeCCC-EEEEEecC---CeEEEEeCCCccE
Q psy2110         296 CPMRHAAV--LVDT-------DGDHQIVPIDEDS-DLSIVASF----DRRGQ-HVVTGNSK---GKVLVLSCPALEL  354 (622)
Q Consensus       296 ~~~~~~i~--~~d~-------~~~~~~~~~~~~~-~~~~~~~~----~~~~~-~l~~~~~d---g~i~i~d~~~~~~  354 (622)
                      ...++...  ++++       .++.....+.... ..+..+.+    ++++. ++++.+..   ..+..+|+.+++.
T Consensus       385 ~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          385 GRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             EEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             EEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            88777644  5554       2222022222111 11223322    34554 44443332   4677888877653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.79  E-value=7e-07  Score=95.15  Aligned_cols=271  Identities=11%  Similarity=0.060  Sum_probs=153.5

Q ss_pred             EEEEcC-CCCEEEEeeCCC-----------cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe
Q psy2110         146 TCAFNK-RGTLLAVGCNDG-----------RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC  213 (622)
Q Consensus       146 ~~~~s~-d~~~l~s~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  213 (622)
                      ++++.+ ++++++.|+.+.           .+.+||..+++............        ....++++..+|+++++|+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~--------~~~~~~~~~~~g~lyv~GG  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD--------MFCPGISMDGNGQIVVTGG  261 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC--------CSSCEEEECTTSCEEEECS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC--------CccccccCCCCCCEEEeCC
Confidence            667777 888888887543           58899988875433221111100        1123567789999999988


Q ss_pred             C-CCeEEEEEcCCCceEEEeccCCc-CeeEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCcEEEEE-----eCCCCe
Q psy2110         214 N-DGRIVLWDFLTRGIAKIISAHMH-PVCSISWSRNGYKIISAS-TD-----NNVCIWDVLTGECEQKY-----RFPSPI  280 (622)
Q Consensus       214 ~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~~-----~~~~~v  280 (622)
                      . +..+.+||..+.+....-.-+.. .-.+++..++++.++.|+ .+     ..+.+||..+.+....-     .....-
T Consensus       262 ~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~  341 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  341 (656)
T ss_dssp             SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             CCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence            4 46899999987754432221212 123456667899999888 34     46999999887755431     111000


Q ss_pred             EEEEEeCCCCeEEEEeeCC---------CcEEEEEecCCceeecccCC---------CCceEEEEEe-eCCCEEEEEecC
Q psy2110         281 LKVQFHPRNDHMFLVCPMR---------HAAVLVDTDGDHQIVPIDED---------SDLSIVASFD-RRGQHVVTGNSK  341 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~l~~~~~d  341 (622)
                      ....+..++. +++.++.+         ..+..||..+..........         ...-.++.+. .++++++.|+.+
T Consensus       342 ~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~  420 (656)
T 1k3i_A          342 KQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  420 (656)
T ss_dssp             TTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             ccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence            0011122233 44444333         35677887765422221111         1122334443 367788888754


Q ss_pred             C-----------eEEEEeCCCccEEEEE--ecCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEecccccc
Q psy2110         342 G-----------KVLVLSCPALELKASF--KASTTA-IKSIEFARRGNCLLVNTGD-----------RLIRVYNHQEVLN  396 (622)
Q Consensus       342 g-----------~i~i~d~~~~~~~~~~--~~~~~~-i~~~~~s~~~~~l~~~~~d-----------~~i~i~d~~~~~~  396 (622)
                      +           .+.+||..+.+.....  ..+... -.+++..|+++.+++++.+           ..+.+||....  
T Consensus       421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--  498 (656)
T 1k3i_A          421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--  498 (656)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--
T ss_pred             CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--
Confidence            2           6888888776654433  222222 2355677899999998754           46889998631  


Q ss_pred             cCCCCCCCcceeeecccc-ceeeeeEEEcCCCCeEEEeeC
Q psy2110         397 AGKDGDPEPIQKLQDLVN-KTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~  435 (622)
                              ....+..... ......+.+.|||+.++.|+.
T Consensus       499 --------~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          499 --------TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             --------EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             --------ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                    1111111111 111123467799999999885

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=4.1e-06  Score=80.65  Aligned_cols=249  Identities=8%  Similarity=0.028  Sum_probs=140.6

Q ss_pred             eEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecC-----ccccccceeEEEEcC-CCCEEEE
Q psy2110          85 KKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDG-----ALDCISLAVTCAFNK-RGTLLAV  158 (622)
Q Consensus        85 ~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~v~~~~~s~-d~~~l~s  158 (622)
                      ..++++++|+++.++..+ +.|..|+..+++.. .+........  .....+     .......+..+++.+ +++ |+.
T Consensus        22 ~~i~~d~~g~~l~v~~~~-~~i~~~~~~~~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQD-GRVIKYEGPNSGFV-DFAYASPYWN--KAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CCEECCTTCSSEEEECTT-SEEEEECCTTTCEE-EEEESCTTCC--HHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             eEEEEcCCCCEEEEEcCC-CeEEEECCCCCceE-EEeccccccc--ccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            468999999877777654 89999988765443 2221100000  000000     000011236899998 555 555


Q ss_pred             eeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC-CCCEEEEEeC-----------------CCeEEE
Q psy2110         159 GCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK-RGTLLAVGCN-----------------DGRIVL  220 (622)
Q Consensus       159 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-----------------dg~i~i  220 (622)
                      +...+.|..++..++.. ..+......      ........+++.+ +|++.++-..                 .+.|..
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDG------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETT------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCC------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            54445588888765532 222111000      0012357899999 9987665432                 367888


Q ss_pred             EEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCC---cEEEEEeCCCCeEEEEEeCCCCeEEEEe
Q psy2110         221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTG---ECEQKYRFPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       221 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      |+..+++....... ......++++++++.|+.+ ...+.|.+|++...   .........+ ...+++.++|. ++++.
T Consensus       170 ~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~-l~va~  246 (322)
T 2fp8_A          170 YDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH-FWVSS  246 (322)
T ss_dssp             EETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC-EEEEE
T ss_pred             EeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC-EEEEe
Confidence            88776654332222 2345689999999877666 44578999998752   2211112334 78899999987 44444


Q ss_pred             eC----------CCcEEEEEecCCceeecccCC----CCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         297 PM----------RHAAVLVDTDGDHQIVPIDED----SDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       297 ~~----------~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      ..          .+.+..+|.. ++.+..+...    ...+..+++ .+++++++....+.|..+++.
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            33          3557777764 3333333322    133445555 456555555567788888865

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.78  E-value=4.4e-07  Score=96.66  Aligned_cols=231  Identities=10%  Similarity=0.075  Sum_probs=131.3

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee-CC--
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC-ND--  162 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~d--  162 (622)
                      ++++.++++.+++|+.++..+.+||..+++-...-..+.....                .+++..+++++++.|+ .+  
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~----------------~s~~~~~dg~iyv~GG~~~~~  310 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY----------------QSSATMSDGRVFTIGGSWSGG  310 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS----------------CEEEECTTSCEEEECCCCCSS
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc----------------cceEEecCCeEEEEeCcccCC
Confidence            4678899999999997667899999987754432211211111                3566778999999988 34  


Q ss_pred             ---CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC---------CCeEEEEEcCCCceEE
Q psy2110         163 ---GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---------DGRIVLWDFLTRGIAK  230 (622)
Q Consensus       163 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------dg~i~iwd~~~~~~~~  230 (622)
                         ..+.+||..++.....-.....+......       ...+..+++.++.|+.         ...+..||..+.....
T Consensus       311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-------~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-------QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             SCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-------TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cccccceEeCCCCCcceeCCCccccccccccc-------cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence               56999998876432210000000000000       0112234444444433         3457788887766443


Q ss_pred             EeccCCc---------CeeEEEEc-CCCCEEEEEeCCC-----------cEEEEECCCCcEEEEE--eCC-C-CeEEEEE
Q psy2110         231 IISAHMH---------PVCSISWS-RNGYKIISASTDN-----------NVCIWDVLTGECEQKY--RFP-S-PILKVQF  285 (622)
Q Consensus       231 ~~~~~~~---------~v~~~~~s-~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~--~~~-~-~v~~~~~  285 (622)
                      ....+..         .-.++.|. .+++.++.|+.++           .|.+||..+.+.....  ..+ . .-.++..
T Consensus       384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~  463 (656)
T 1k3i_A          384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV  463 (656)
T ss_dssp             EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred             cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEE
Confidence            3322211         22344443 3677777777432           5888898887766554  222 2 2234566


Q ss_pred             eCCCCeEEEEeeCC-----------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec
Q psy2110         286 HPRNDHMFLVCPMR-----------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS  340 (622)
Q Consensus       286 ~~~~~~~~~~~~~~-----------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (622)
                      .|+++ +++.++.+           ..+.+||..+.+-  +............+.+.++|+.++.|+.
T Consensus       464 l~~g~-i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          464 LPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CTTSC-EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCC-EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            67776 56666543           4688999876542  2222222333344556789999999885

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.78  E-value=3.3e-05  Score=73.79  Aligned_cols=225  Identities=10%  Similarity=-0.007  Sum_probs=143.0

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEE
Q psy2110         250 KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIV  325 (622)
Q Consensus       250 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~  325 (622)
                      +|+.+. ...|+..|+.+.+....+.....+..++|++.+..++++....+.|..+++.+    ......+.........
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            344443 35799999998877766666677899999998888888888889999999876    2222222222234567


Q ss_pred             EEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCC
Q psy2110         326 ASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       326 ~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~  402 (622)
                      +++++.+..| ++-...+.|.++++........+.........++++|.+..|+.+...  +.|..++++.        .
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--------~  153 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--------V  153 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------C
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--------C
Confidence            8888755544 555667899999987554443344344567899999977766666543  6788887762        1


Q ss_pred             CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEEe-C
Q psy2110         403 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASIS-S  479 (622)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~-d  479 (622)
                        ....+... .-.....++++|++..|+.+....+.|+.+++........+..  .... ...+++. .+.++++-. .
T Consensus       154 --~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~-P~giav~-~~~ly~~d~~~  228 (316)
T 1ijq_A          154 --DIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVF-EDKVFWTDIIN  228 (316)
T ss_dssp             --CEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEE-TTEEEEEETTT
T ss_pred             --CeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCC-cEEEEEE-CCEEEEEECCC
Confidence              11111110 1122357899999888888877678999999875433222332  1223 6778884 333333333 6


Q ss_pred             CcEEEeecC
Q psy2110         480 GVVSLWAQN  488 (622)
Q Consensus       480 g~v~iw~~~  488 (622)
                      +.|..++..
T Consensus       229 ~~V~~~~~~  237 (316)
T 1ijq_A          229 EAIFSANRL  237 (316)
T ss_dssp             TEEEEEETT
T ss_pred             CeEEEEeCC
Confidence            788887753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=1.6e-05  Score=77.06  Aligned_cols=231  Identities=8%  Similarity=-0.016  Sum_probs=146.8

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED  319 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  319 (622)
                      +|.+..+++ +|+.+ ....|+..++..............+..++|++.+..++++-...+.|..+++............
T Consensus        37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  114 (349)
T 3v64_C           37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  114 (349)
T ss_dssp             CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             cccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence            344444433 44444 3456888888777666666656678999999988888888888889999998765433333323


Q ss_pred             CCceEEEEEeeCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecccccc
Q psy2110         320 SDLSIVASFDRRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-D-RLIRVYNHQEVLN  396 (622)
Q Consensus       320 ~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-~~i~i~d~~~~~~  396 (622)
                      ......+++++.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|..++++.   
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---  191 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---  191 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---
Confidence            3345678898755444 55556778999998755433334344456789999997666665543 4 6788888762   


Q ss_pred             cCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEE
Q psy2110         397 AGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIAS  476 (622)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s  476 (622)
                           .  ....+.. ..-.....++|+|++..|..+....+.|+.+++........+...... ...+++. . ..|+.
T Consensus       192 -----~--~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~-P~giav~-~-~~ly~  260 (349)
T 3v64_C          192 -----S--GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH-PFAITVF-E-DSLYW  260 (349)
T ss_dssp             -----C--SCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS-EEEEEEE-T-TEEEE
T ss_pred             -----C--CcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCC-ceEEEEE-C-CEEEE
Confidence                 1  1111110 011123568999988888888776789999998754433334333333 6778883 3 34444


Q ss_pred             Ee--CCcEEEee
Q psy2110         477 IS--SGVVSLWA  486 (622)
Q Consensus       477 ~~--dg~v~iw~  486 (622)
                      +.  .+.|...+
T Consensus       261 td~~~~~V~~~~  272 (349)
T 3v64_C          261 TDWHTKSINSAN  272 (349)
T ss_dssp             EETTTTEEEEEE
T ss_pred             ecCCCCeEEEEE
Confidence            44  67777666

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.74  E-value=4.2e-05  Score=75.68  Aligned_cols=243  Identities=8%  Similarity=-0.010  Sum_probs=155.8

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCC----cEEEEEe-CCCCeE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTG----ECEQKYR-FPSPIL  281 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~-~~~~v~  281 (622)
                      +|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|+.+++...    .....+. ......
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 4788888887765544443 446788999998666666554 4678888988752    2333333 345678


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEEe
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASFK  359 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  359 (622)
                      .+++.+.+..++++-...+.|.+.++........+.........++++|.+.+|+....  .+.|...++........+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            89999877778888888889999998876554444444455778999997666665542  3689999887544333333


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCCC
Q psy2110         360 ASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQ  437 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~d  437 (622)
                      ..-...+.|++++++..|+.+. ..+.|..++++.          ...+.+... ..-.....+++  ++..|+......
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG----------~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~  310 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------GNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIIN  310 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------CCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC----------CccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCC
Confidence            3345678999999887777764 467899999862          111111111 01111234455  445565555557


Q ss_pred             CeEEEEECCCCeeEEEEecCCCCceeEE
Q psy2110         438 HALYIWEKSVGNLVKILHGTKGELLLDV  465 (622)
Q Consensus       438 ~~i~iwd~~~~~~~~~~~~~~~~~v~~v  465 (622)
                      +.|+.++..+|+.+..+...... ..++
T Consensus       311 ~~V~~~~~~~G~~~~~i~~~~~~-p~~i  337 (400)
T 3p5b_L          311 EAIFSANRLTGSDVNLLAENLLS-PEDM  337 (400)
T ss_dssp             CSEEEEESSSCCCCEEEECSCSC-EEEE
T ss_pred             CeEEEEEcCCCCceEEEecCCCC-CceE
Confidence            88999998888877777654433 4444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.73  E-value=1e-05  Score=79.71  Aligned_cols=224  Identities=8%  Similarity=-0.013  Sum_probs=144.6

Q ss_pred             EEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe
Q psy2110         250 KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD  329 (622)
Q Consensus       250 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  329 (622)
                      +|+.+. ...|+.+++..............+..++|++.+..++++-...+.|+.+++........+.........++++
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd  167 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD  167 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred             eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence            444443 4678889988777666666666789999999888888888888899999987664333333223344568888


Q ss_pred             eCCCEE-EEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecccccccCCCCCCCcc
Q psy2110         330 RRGQHV-VTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG-D-RLIRVYNHQEVLNAGKDGDPEPI  406 (622)
Q Consensus       330 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~  406 (622)
                      +.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.+.. . +.|+.++++.        .  ..
T Consensus       168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--------~--~~  237 (386)
T 3v65_B          168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--------S--GR  237 (386)
T ss_dssp             TTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--------C--SC
T ss_pred             eCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC--------C--Cc
Confidence            755544 55556678999888755433334444456789999997776666643 3 6788888762        1  11


Q ss_pred             eeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEe
Q psy2110         407 QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLW  485 (622)
Q Consensus       407 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw  485 (622)
                      ..+.. ..-.....++|+|++..|+.+....+.|+.+++........+...... ...+++. .+.++++-. .+.|..+
T Consensus       238 ~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~-P~giav~-~~~ly~td~~~~~V~~~  314 (386)
T 3v65_B          238 RIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPH-PFAITVF-EDSLYWTDWHTKSINSA  314 (386)
T ss_dssp             EEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSS-EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCC-ceEEEEE-CCEEEEeeCCCCeEEEE
Confidence            11111 111123568999988888888776889999998754443334333333 6778883 333333333 6777777


Q ss_pred             ec
Q psy2110         486 AQ  487 (622)
Q Consensus       486 ~~  487 (622)
                      +.
T Consensus       315 ~~  316 (386)
T 3v65_B          315 NK  316 (386)
T ss_dssp             ET
T ss_pred             EC
Confidence            63

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.73  E-value=0.00045  Score=72.30  Aligned_cols=365  Identities=5%  Similarity=-0.084  Sum_probs=199.7

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCN  161 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~  161 (622)
                      .+..++|++.+..|..+....+.|+.+++........+.......                 ..+++.+.+..|+ +-..
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P-----------------~GlAvD~~~~~LY~tD~~  100 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP-----------------EGMAVDWLGKNLYWADTG  100 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC-----------------CEEEEETTTTEEEEEETT
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc-----------------ceEEEEeCCCEEEEEECC
Confidence            356799999888777766556899999887554433333221111                 3888887665554 4445


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      .+.|.+.++..... ..+....          ......+++.|....|+....  .+.|...++........+. .-...
T Consensus       101 ~~~I~v~~~dG~~~-~~l~~~~----------l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P  168 (628)
T 4a0p_A          101 TNRIEVSKLDGQHR-QVLVWKD----------LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRA  168 (628)
T ss_dssp             TTEEEEEETTSTTC-EEEECSS----------CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSE
T ss_pred             CCEEEEEecCCCcE-EEEEeCC----------CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCc
Confidence            67888888765432 2221110          123578999996666666553  5678888876544333333 44567


Q ss_pred             eEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--
Q psy2110         240 CSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--  316 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--  316 (622)
                      ..|++++++..|+.+.. .+.|...|+................++++..  ..++++-...+.|...|..++.....+  
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence            89999998777776654 5678888887544322222223344566543  345555444555555553222100000  


Q ss_pred             -----------c--------------------------------------------------------------------
Q psy2110         317 -----------D--------------------------------------------------------------------  317 (622)
Q Consensus       317 -----------~--------------------------------------------------------------------  317 (622)
                                 .                                                                    
T Consensus       247 ~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~  326 (628)
T 4a0p_A          247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE  326 (628)
T ss_dssp             SCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCT
T ss_pred             CCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEeccc
Confidence                       0                                                                    


Q ss_pred             ----------CCCCceEEEEEeeCCCEEEEE-ecCCeEEEEeCCCccEEEEEec------CCCCEEEEEEcCCCCEEEEE
Q psy2110         318 ----------EDSDLSIVASFDRRGQHVVTG-NSKGKVLVLSCPALELKASFKA------STTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       318 ----------~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~  380 (622)
                                ..-..+..+.|++....|+.+ ...+.|+.++.........+..      ......++++...++.|..+
T Consensus       327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t  406 (628)
T 4a0p_A          327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT  406 (628)
T ss_dssp             TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence                      000112233333332222222 1223344444332211111111      12357789998887766544


Q ss_pred             -eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC--eEEEEECCCCeeEEEEecC
Q psy2110         381 -TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH--ALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       381 -~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~  457 (622)
                       +..+.|.+.+++.        .  ....+... .-.....+++.|...+|+.......  .|...++............
T Consensus       407 d~~~~~I~v~~~~G--------~--~~~~l~~~-~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~  475 (628)
T 4a0p_A          407 CEATNVINVTRLDG--------R--SVGVVLKG-EQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSG  475 (628)
T ss_dssp             ETTTTEEEEEETTS--------C--EEEEEEEC-TTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSS
T ss_pred             cCCCCEEEEEECCC--------C--eEEEEEeC-CCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEecc
Confidence             5577888888762        1  11122111 1123467899995555554433233  5777777643333333323


Q ss_pred             CCCceeEEEECCCCCEEEEEe--CCcEEEeecCCc
Q psy2110         458 KGELLLDVVWHPVRPIIASIS--SGVVSLWAQNQV  490 (622)
Q Consensus       458 ~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~~~  490 (622)
                      -.. .+.+++.+....|+.+.  .+.|...++++.
T Consensus       476 l~~-P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~  509 (628)
T 4a0p_A          476 LSK-PIALALDSRLGKLFWADSDLRRIESSDLSGA  509 (628)
T ss_dssp             CSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCC-ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            333 79999999988888776  578888888754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=7.1e-06  Score=82.05  Aligned_cols=242  Identities=11%  Similarity=0.080  Sum_probs=142.8

Q ss_pred             CeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC----cEEEEEecCCce
Q psy2110         238 PVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH----AAVLVDTDGDHQ  312 (622)
Q Consensus       238 ~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~  312 (622)
                      ....++++| ++..|+.+...+.|+.+|+.+++.............++++++++.++++...++    .+..++......
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            457899998 455676666558899999988776666555667889999999987777765433    233344332211


Q ss_pred             -eecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcCCCCEEEEE-eCCCcEEE
Q psy2110         313 -IVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFARRGNCLLVN-TGDRLIRV  388 (622)
Q Consensus       313 -~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i~i  388 (622)
                       ...+. .......++++| +|.++++-...+.|..++...+........ ....-+.++|+|+|++|+++ ...+.|+.
T Consensus       218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence             01111 123345678999 677777766788999999887654332222 22346789999999966555 45778999


Q ss_pred             EecccccccCCCCCCCcceeeecc--------------ccceeeeeEEEc--------CCCCeEEEeeCCCCeEEEEECC
Q psy2110         389 YNHQEVLNAGKDGDPEPIQKLQDL--------------VNKTMWKKCCFS--------GDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~s--------pdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      ++.+...     +.......+...              .-..+...++..        ++|.+.++-. ..+.|+.++ .
T Consensus       297 ~~~d~~~-----~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~-~n~~I~~i~-~  369 (430)
T 3tc9_A          297 SDYDWKT-----KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDR-ENHCIRILT-P  369 (430)
T ss_dssp             EEEETTT-----TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEG-GGTEEEEEC-T
T ss_pred             EeCCccc-----ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEEC-CCcEEEEEC-C
Confidence            8876210     000001111100              000111134443        3455444444 378899998 4


Q ss_pred             CCeeEEEEec----C----CC--------CceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110         447 VGNLVKILHG----T----KG--------ELLLDVVWHPVRPIIASIS--SGVVSLWAQ  487 (622)
Q Consensus       447 ~~~~~~~~~~----~----~~--------~~v~~v~~sp~~~~l~s~~--dg~v~iw~~  487 (622)
                      +|+.......    .    .+        .....++++|++..|+.+.  ...|+..++
T Consensus       370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            5654433321    0    11        1278999999645555444  677877765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=8.3e-06  Score=81.56  Aligned_cols=235  Identities=13%  Similarity=0.114  Sum_probs=144.6

Q ss_pred             ceeEEEEcC-CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-C----
Q psy2110         143 LAVTCAFNK-RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-G----  216 (622)
Q Consensus       143 ~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g----  216 (622)
                      ....++++| ++..|+++...+.|+.+|+..+.........            .....++|+++|++|+++... +    
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~------------~~P~~ia~d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL------------SKVRTICWTHEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC------------SCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC------------CCcceEEEeCCCCEEEEEeCCCCcccc
Confidence            446899998 4566666665578999998776443332211            246789999999966666542 1    


Q ss_pred             eEEEEEcCCCceE--EEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC--CCCeEEEEEeCCCCe
Q psy2110         217 RIVLWDFLTRGIA--KIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECEQKYRF--PSPILKVQFHPRNDH  291 (622)
Q Consensus       217 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~  291 (622)
                      .+.+++. .+...  ..+.. ......++++| +|..+++-...+.|..++..++........  ......++|+|+++.
T Consensus       206 ~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          206 NNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             EEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             eEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence            2333443 33222  22322 23457788999 676666655678999999987765344432  245788999999998


Q ss_pred             EEEEeeCCCcEEEEEecCC-ce---eecccCC---------------CCceE-EEEEe--------eCCCEEEEEecCCe
Q psy2110         292 MFLVCPMRHAAVLVDTDGD-HQ---IVPIDED---------------SDLSI-VASFD--------RRGQHVVTGNSKGK  343 (622)
Q Consensus       292 ~~~~~~~~~~i~~~d~~~~-~~---~~~~~~~---------------~~~~~-~~~~~--------~~~~~l~~~~~dg~  343 (622)
                      ++++....+.|..++.... ..   ...+...               -.... .++..        ++|.++++-...+.
T Consensus       284 lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~  363 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC  363 (430)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred             EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence            8888888899999887642 11   1111100               01122 34443        34666666667788


Q ss_pred             EEEEeCCCccEEEEEec----C-------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q psy2110         344 VLVLSCPALELKASFKA----S-------------TTAIKSIEFARR-GNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~----~-------------~~~i~~~~~s~~-~~~l~~~~~d~~i~i~d~~  392 (622)
                      |+.++ .++........    .             -..-..++++|+ +.++++-..++.|+.++++
T Consensus       364 I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          364 IRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            99998 45654333221    0             124678999995 5544444556778887764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.69  E-value=6.5e-05  Score=74.30  Aligned_cols=244  Identities=7%  Similarity=-0.058  Sum_probs=150.3

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe-eCCCcEEEEecCC
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLT  172 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~vw~~~~  172 (622)
                      .+|+.+.  .+.|+..++........+......                  ..++|++.+..|+.+ ...+.|+.+++..
T Consensus        84 ~~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~------------------~~l~~d~~~~~lywsD~~~~~I~~~~~~g  143 (400)
T 3p5b_L           84 AYLFFTN--RHEVRKMTLDRSEYTSLIPNLRNV------------------VALDTEVASNRIYWSDLSQRMICSTQLDR  143 (400)
T ss_dssp             CEEEEEE--TTEEEEECTTSCSCEEEECSCSCE------------------EEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             ceeEEec--cceeEEEccCCcceeEeccccCcc------------------eEEeeeeccCceEEEecCCCeEEEEEccc
Confidence            3555554  268888888766655544443333                  499999876666554 4567888888765


Q ss_pred             cc----cccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCC
Q psy2110         173 RG----IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRN  247 (622)
Q Consensus       173 ~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  247 (622)
                      ..    ....+...           ......+++.+.+..| ++-...+.|.+.++........+.........|++.|.
T Consensus       144 ~~~~~~~~~~~~~~-----------~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~  212 (400)
T 3p5b_L          144 AHGVSSYDTVISRD-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  212 (400)
T ss_dssp             ----CCCEEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT
T ss_pred             CCCCCcceEEEeCC-----------CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc
Confidence            22    11111111           1235788998854444 44455788999998765544444444456789999997


Q ss_pred             CCEEEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC--CCCc
Q psy2110         248 GYKIISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE--DSDL  322 (622)
Q Consensus       248 ~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~  322 (622)
                      +.+|+.+..  .+.|...++.......... .-.....+++++++..++++-...+.|..+|+...........  .-..
T Consensus       213 ~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~  292 (400)
T 3p5b_L          213 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH  292 (400)
T ss_dssp             TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSS
T ss_pred             cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCC
Confidence            666666553  3689999987554444433 2356789999999888888888888999999876433222221  2233


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEE
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIE  369 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  369 (622)
                      ...+++ ..+..+++....+.|..++..+++.+..+........+++
T Consensus       293 P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          293 PFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             CEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            445555 2334455555667788888777776665554433344443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.67  E-value=1.1e-05  Score=80.65  Aligned_cols=234  Identities=12%  Similarity=0.097  Sum_probs=143.6

Q ss_pred             ceeEEEEcCC--CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC----
Q psy2110         143 LAVTCAFNKR--GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG----  216 (622)
Q Consensus       143 ~v~~~~~s~d--~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg----  216 (622)
                      ....++|+|+  ...|+.+...+.|+.++..++.........            .....++++++|+ |+++...+    
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~------------~~P~giavd~dG~-lyVad~~~~~~~  206 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI------------GQCADVNFTLNGD-MVVVDDQSSDTN  206 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC------------SCEEEEEECTTCC-EEEEECCSCTTS
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC------------CCccEEEECCCCC-EEEEcCCCCccc
Confidence            3469999995  445555544488999998776554433211            2468999999999 54444321    


Q ss_pred             -eEEEEEcCCCce-EEEeccCCcCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEE-EEEeC--CCCeEEEEEeCCCC
Q psy2110         217 -RIVLWDFLTRGI-AKIISAHMHPVCSISWSR-NGYKIISASTDNNVCIWDVLTGECE-QKYRF--PSPILKVQFHPRND  290 (622)
Q Consensus       217 -~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~--~~~v~~~~~~~~~~  290 (622)
                       .+...+...+.. ...+. .......+++++ +|..+++-..++.|+.++..++... ..+..  ......++++|+++
T Consensus       207 ~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          207 TGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             EEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             ceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence             233333222211 01222 223456788999 6665555556788999999878763 33332  22234699999999


Q ss_pred             eEEEEeeCCCcEEEEEecCC--ce--eecccC---------------CCCceEEEEE---------eeCCCEEEEEecCC
Q psy2110         291 HMFLVCPMRHAAVLVDTDGD--HQ--IVPIDE---------------DSDLSIVASF---------DRRGQHVVTGNSKG  342 (622)
Q Consensus       291 ~~~~~~~~~~~i~~~d~~~~--~~--~~~~~~---------------~~~~~~~~~~---------~~~~~~l~~~~~dg  342 (622)
                      .++++-...+.|+.++....  ..  ...+..               .-.....+++         .++|.++++-...+
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            88888888899999887532  10  001100               1123456888         77777777777788


Q ss_pred             eEEEEeCCCccEEEEEecC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecc
Q psy2110         343 KVLVLSCPALELKASFKAS------------------TTAIKSIEFA-RRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       343 ~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .|+.++. ++... ++-+.                  -..-..|+++ ++|.++++-..++.|+.++++
T Consensus       366 ~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 TVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            9999985 55433 33221                  1235688999 566655555567788887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.66  E-value=5.9e-06  Score=89.25  Aligned_cols=197  Identities=9%  Similarity=0.053  Sum_probs=102.4

Q ss_pred             EEEEcCCCCEEEEecCCC----CeEEEEEcCCCce--EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          86 KCCFSGDGEYVCAGSARQ----HALYIWEKSVGNL--VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~----~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      .++|+|||+.|+....+.    ..|+++++.+++.  ...+........                ..+.|||||++|+..
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~----------------~~~~~SpDg~~l~~~  288 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFS----------------AFMYKAADTNTLCIG  288 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCE----------------EEEEECTTSSEEEEE
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceE----------------EEEEECCCCCEEEEE
Confidence            478999999988876542    3688888877642  223322222221                478999999988866


Q ss_pred             eC---CCcEEEEecCCcc-cc--cccccccCCCcccccccccceEEEEECCCCCEEEEEe-CC----CeEEEEEcCCCce
Q psy2110         160 CN---DGRIVLWDFLTRG-IA--KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-ND----GRIVLWDFLTRGI  228 (622)
Q Consensus       160 ~~---dg~i~vw~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~d----g~i~iwd~~~~~~  228 (622)
                      +.   ...|.++|+.++. ..  ..+.....          .....+.|+. |+.|+..+ .+    ..|..+++.++..
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~----------~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~  357 (751)
T 2xe4_A          289 SQSPETAEVHLLDLRKGNAHNTLEIVRPREK----------GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD  357 (751)
T ss_dssp             EECSSCEEEEEEESSSCTTCCCEEESSCCCT----------TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC
T ss_pred             ecCCCCceEEEEECCCCCCCceeEEeecCCC----------CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc
Confidence            53   3458888887752 11  22211110          1234444444 55444443 33    3566777665322


Q ss_pred             EEE-eccCCc--CeeEEEEcCCCCEEEEEeCCCc--EEEEEC-------CCCcEEEEEeCCCCeEEEEE------eCCCC
Q psy2110         229 AKI-ISAHMH--PVCSISWSRNGYKIISASTDNN--VCIWDV-------LTGECEQKYRFPSPILKVQF------HPRND  290 (622)
Q Consensus       229 ~~~-~~~~~~--~v~~~~~s~~~~~l~s~~~d~~--i~iwd~-------~~~~~~~~~~~~~~v~~~~~------~~~~~  290 (622)
                      ... +..+..  .+..+.+. .+..+++...++.  |.++++       .+++....+..+.....+.+      ++++.
T Consensus       358 ~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~  436 (751)
T 2xe4_A          358 WSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEP  436 (751)
T ss_dssp             CCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCS
T ss_pred             ceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCC
Confidence            222 333333  34555554 2334455556664  566675       34441344444433323333      34666


Q ss_pred             eEEEEeeCCC---cEEEEEecCC
Q psy2110         291 HMFLVCPMRH---AAVLVDTDGD  310 (622)
Q Consensus       291 ~~~~~~~~~~---~i~~~d~~~~  310 (622)
                      .++++.+...   .++.+|+.++
T Consensus       437 ~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          437 TFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             CEEEEEEETTEEEEEEEECTTTC
T ss_pred             EEEEEEeCCCCCCEEEEEECCCC
Confidence            5655544332   3455555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.66  E-value=4.1e-05  Score=72.97  Aligned_cols=234  Identities=8%  Similarity=-0.050  Sum_probs=143.1

Q ss_pred             EEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEecC
Q psy2110          95 YVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFL  171 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~  171 (622)
                      +|+.+.  ...|+.+++....  ....+.+....                  ..++|.+.+..|+ +-...+.|..+++.
T Consensus         6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~------------------~~ld~d~~~~~lyw~D~~~~~I~r~~~~   65 (318)
T 3sov_A            6 LLLYAN--RRDLRLVDATNGKENATIVVGGLEDA------------------AAVDFVFSHGLIYWSDVSEEAIKRTEFN   65 (318)
T ss_dssp             EEEEEC--EEEEEEEETTCTTSCCEEEEEEEEEE------------------EEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred             EEEEEc--cCeEEEEECCCCceEEEEEecCCCcc------------------EEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence            455544  2689999987653  22222222222                  3889998655554 44556789888887


Q ss_pred             CcccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCE
Q psy2110         172 TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYK  250 (622)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  250 (622)
                      .+.....+....          ......+++.+.+..| ++-...+.|.++++........+.........+++.|.+.+
T Consensus        66 g~~~~~~~~~~~----------l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~  135 (318)
T 3sov_A           66 KTESVQNVVVSG----------LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF  135 (318)
T ss_dssp             SSSCCCEEEEEC----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTE
T ss_pred             CCCceEEEEcCC----------CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCE
Confidence            653221111110          0124578888755544 44455788999998654433333344456789999987666


Q ss_pred             EEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEE
Q psy2110         251 IISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVAS  327 (622)
Q Consensus       251 l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  327 (622)
                      |+.+..  .+.|...++.......... .-.....+++++++..++++-...+.|..+++..................++
T Consensus       136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla  215 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT  215 (318)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred             EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            666653  4778888876443333332 2345689999998888888888888999999875433322232334455666


Q ss_pred             EeeCCCEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         328 FDRRGQHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       328 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      +. .+..+++-...+.|..++..+++....+.
T Consensus       216 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          216 LF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             Ee-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            64 33445555566788888887776554444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.64  E-value=0.0015  Score=73.29  Aligned_cols=215  Identities=13%  Similarity=0.084  Sum_probs=121.9

Q ss_pred             cEEEEECCCCcEEEEEeCC--CCeEEEE---EeCCCCeEEEEee----------CCCcEEEEEecCCcee-ecccCCCCc
Q psy2110         259 NVCIWDVLTGECEQKYRFP--SPILKVQ---FHPRNDHMFLVCP----------MRHAAVLVDTDGDHQI-VPIDEDSDL  322 (622)
Q Consensus       259 ~i~iwd~~~~~~~~~~~~~--~~v~~~~---~~~~~~~~~~~~~----------~~~~i~~~d~~~~~~~-~~~~~~~~~  322 (622)
                      .|++.|..+.+.+..+...  ..+.+++   |..+...++++|.          ..|.+.+|++...+.. .......+.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            4778888888877776643  3344444   3334345666664          3578999998743211 111223455


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCC
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDG  401 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  401 (622)
                      +++++-- +| +|++|- ...|++|++...+.+. ..... ..|..+.....++++++|..-..|.++..+.        
T Consensus       888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~--------  955 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKP--------  955 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEET--------
T ss_pred             CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEc--------
Confidence            6665432 45 555543 4579999998665443 22212 2233333333577888888777777766542        


Q ss_pred             CCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC--------CeeEEEEecCCCCceeEEE---ECCC
Q psy2110         402 DPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV--------GNLVKILHGTKGELLLDVV---WHPV  470 (622)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~v~~v~---~sp~  470 (622)
                      ....+..+........++++.|-.++ .++.+.. +|.|.+.....        .++...-.-|-+..|+++.   +.+.
T Consensus       956 ~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~-~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~ 1033 (1158)
T 3ei3_A          956 MEGNFEEIARDFNPNWMSAVEILDDD-NFLGAEN-AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ 1033 (1158)
T ss_dssp             TTTEEEEEEECCSCBCEEEEEEEETT-EEEEEET-TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC
T ss_pred             CCCeEEEEEeecccccEEEEEEEccC-cEEEEcC-CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecC
Confidence            22344445444455556667665444 5666665 88999987643        1233333445555588775   3443


Q ss_pred             C---------CEEEEEe-CCcEEEeec
Q psy2110         471 R---------PIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       471 ~---------~~l~s~~-dg~v~iw~~  487 (622)
                      +         ..++.++ +|.|.+.-.
T Consensus      1034 ~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1034 NLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             -------CEEEEEEEEETTSCEEEEEE
T ss_pred             CCccccccccceEEEEecCCEEEEEEE
Confidence            2         2355555 998877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.63  E-value=8.8e-05  Score=70.67  Aligned_cols=246  Identities=9%  Similarity=-0.014  Sum_probs=151.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEE-EEE-eCCCCeEE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTGECE-QKY-RFPSPILK  282 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~-~~~-~~~~~v~~  282 (622)
                      +|+.+. ...|+.+++....  ....+. .......++|.+.+..|+.+ ...+.|..+++..+... ..+ ..-.....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            344443 4678999987653  222222 22456789999865555544 45678999998766321 122 22345678


Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEec
Q psy2110         283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      +++.+.+..++++-...+.|.++++..................++++|.+..|+...  ..+.|..+++...........
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            999987887888877888999999876544333334445567899998766666655  357898888764332222223


Q ss_pred             CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCe
Q psy2110         361 STTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHA  439 (622)
Q Consensus       361 ~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~  439 (622)
                      .-..-+.|++++++..|..+. ..+.|..++++.        .  ..+.+... .......+++.  +..++......+.
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------~--~~~~~~~~-~~~~P~glav~--~~~lywtd~~~~~  230 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------T--NRQAVVKG-SLPHPFALTLF--EDILYWTDWSTHS  230 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C--SCEEEECS-CCSCEEEEEEE--TTEEEEEETTTTE
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------C--ceEEEecC-CCCCceEEEEe--CCEEEEEecCCCe
Confidence            334568999999777776664 567899999872        1  11111110 11112345554  3455555555789


Q ss_pred             EEEEECCCCeeEEEEecCCCCceeEEE-ECC
Q psy2110         440 LYIWEKSVGNLVKILHGTKGELLLDVV-WHP  469 (622)
Q Consensus       440 i~iwd~~~~~~~~~~~~~~~~~v~~v~-~sp  469 (622)
                      |..++..+|+....+...... +.+++ ++|
T Consensus       231 V~~~~~~~G~~~~~i~~~~~~-P~~i~v~~~  260 (318)
T 3sov_A          231 ILACNKYTGEGLREIHSDIFS-PMDIHAFSQ  260 (318)
T ss_dssp             EEEEETTTCCSCEEEECCCSS-CCCEEEECG
T ss_pred             EEEEECCCCCceEEEeCCCCC-CcEEEEecc
Confidence            999999888877776654333 34443 344

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.61  E-value=0.0018  Score=72.54  Aligned_cols=429  Identities=10%  Similarity=0.118  Sum_probs=220.6

Q ss_pred             EEEccCCcEEEeccCCCeEEEEeccccc-e--ecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccc
Q psy2110           7 ASFDRRGQHVVTGNSKGKVLVLSCPALE-L--KASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTM   83 (622)
Q Consensus         7 ~~fspdg~~latg~~dg~v~vwd~~~~~-~--~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (622)
                      ++..|.+-+++.+.....+.-|....+. .  .+.++..++.++ .+.+.++.+...          .........-...
T Consensus       487 vQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~----------~L~~~~~~~l~~e  555 (1158)
T 3ei3_A          487 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ----------ELRQISHTEMEHE  555 (1158)
T ss_dssp             EEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETT----------EEEEEEEEECSSC
T ss_pred             EEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCC----------ceeeecccCCCCc
Confidence            3444555555544434455567654332 1  133455666664 566767665421          1111122223446


Q ss_pred             eeEEEEcCC------CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE
Q psy2110          84 WKKCCFSGD------GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA  157 (622)
Q Consensus        84 ~~~~~~sp~------~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  157 (622)
                      +.|+++.|.      ++++++|...+++++|+++.+.+.+....-....+-             ..+.-+.+ ....+|.
T Consensus       556 vscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p-------------~si~l~~~-~~~~~L~  621 (1158)
T 3ei3_A          556 VACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIP-------------RSILMTTF-ESSHYLL  621 (1158)
T ss_dssp             EEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCE-------------EEEEEEEE-TTEEEEE
T ss_pred             eEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCC-------------cEEEEEEe-CCCcEEE
Confidence            788998864      468999987569999999987665543322111110             00112222 2345788


Q ss_pred             EeeCCCcEEEEecC--CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE-EEecc
Q psy2110         158 VGCNDGRIVLWDFL--TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA-KIISA  234 (622)
Q Consensus       158 s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~-~~~~~  234 (622)
                      .|-.||.+.-+.+.  +|.....-....     +.    ..+.-..+...|..-+.+..+....++.-. ++.. ..+. 
T Consensus       622 igl~dG~l~~~~~d~~tg~l~d~r~~~L-----G~----~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~-  690 (1158)
T 3ei3_A          622 CALGDGALFYFGLNIETGLLSDRKKVTL-----GT----QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVN-  690 (1158)
T ss_dssp             EEETTSEEEEEEECTTTCCEEEEEEEEC-----CS----SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBS-
T ss_pred             EEeCCCeEEEEEEcCCCCccccceeEEc-----CC----CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccC-
Confidence            88899988766554  333321110000     00    112222333334333333334444444432 2222 1111 


Q ss_pred             CCcCe-eEEEEcCC--CCEEEEEeCCCcEEEEECCCC--cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC----------
Q psy2110         235 HMHPV-CSISWSRN--GYKIISASTDNNVCIWDVLTG--ECEQKYRFPSPILKVQFHPRNDHMFLVCPMR----------  299 (622)
Q Consensus       235 ~~~~v-~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------  299 (622)
                       -..+ ....|+..  ..-++..+ ++.++|..+..-  -.++.+.....+..++++|..+.+++..+..          
T Consensus       691 -~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~  768 (1158)
T 3ei3_A          691 -LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT  768 (1158)
T ss_dssp             -SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEE
T ss_pred             -hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccc
Confidence             1122 23345332  23455444 456888877543  2455666778899999999877655544211          


Q ss_pred             --------------------------------------CcEEEEEecCCceeecccCC-CCceEEEE---Eee-CCCEEE
Q psy2110         300 --------------------------------------HAAVLVDTDGDHQIVPIDED-SDLSIVAS---FDR-RGQHVV  336 (622)
Q Consensus       300 --------------------------------------~~i~~~d~~~~~~~~~~~~~-~~~~~~~~---~~~-~~~~l~  336 (622)
                                                            ..++++|..+...+..+.-. ...+.+++   +.. ...+++
T Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lv  848 (1158)
T 3ei3_A          769 ALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFI  848 (1158)
T ss_dssp             ESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEE
T ss_pred             hhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEE
Confidence                                                  12445555444433332221 22233333   222 246888


Q ss_pred             EEe----------cCCeEEEEeCCCccEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCc
Q psy2110         337 TGN----------SKGKVLVLSCPALELKASFK-ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       337 ~~~----------~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                      +|+          ..|.|++|++..+++....+ ...+.+++++-- +| +|+++- ...|++|++..         .+.
T Consensus       849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~---------~~~  916 (1158)
T 3ei3_A          849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTT---------EKE  916 (1158)
T ss_dssp             EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECT---------TSC
T ss_pred             EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCC---------Cce
Confidence            886          35889999987544322222 335778887644 34 455443 47899999973         112


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEE--EECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcE
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYI--WEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVV  482 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~i--wd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v  482 (622)
                      ++.-......  +..+.....|++|++|...+ .|.+  |+...+++...-+......++++.+-.++ .++.+. +|++
T Consensus       917 L~~~~~~~~~--i~~~~l~~~~~~I~vgD~~~-Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl  992 (1158)
T 3ei3_A          917 LRTECNHYNN--IMALYLKTKGDFILVGDLMR-SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNL  992 (1158)
T ss_dssp             EEEEEEECCC--SCEEEEEEETTEEEEEESSB-CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEE
T ss_pred             EEEEeecccc--EEEEEEeccCCEEEEEEhhh-eEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcE
Confidence            2210001111  12223334578899988743 4544  55555555444444333348888887555 555566 8999


Q ss_pred             EEeecCC
Q psy2110         483 SLWAQNQ  489 (622)
Q Consensus       483 ~iw~~~~  489 (622)
                      .+...+.
T Consensus       993 ~vl~~~~  999 (1158)
T 3ei3_A          993 FVCQKDS  999 (1158)
T ss_dssp             EEEEECT
T ss_pred             EEEecCC
Confidence            9988754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.59  E-value=0.00012  Score=78.47  Aligned_cols=249  Identities=10%  Similarity=0.018  Sum_probs=156.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCC----cEEEEEe-CCCCeE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISA-STDNNVCIWDVLTG----ECEQKYR-FPSPIL  281 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~----~~~~~~~-~~~~v~  281 (622)
                      +|+.+ ....|+..++........+. ....+..|+|.+....|+.+ ...+.|+.+++...    .....+. ......
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            44444 34568888877665444443 34667899999865555544 44577888888753    2233333 335677


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec--CCeEEEEeCCCccEEEEEe
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS--KGKVLVLSCPALELKASFK  359 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~  359 (622)
                      .|++.+.+..++++-...+.|.+.++........+.........++++|.+.+|+....  .+.|...++........+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            89999988888888888899999999876544444444455788999998666665542  3689999987544444444


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         360 ASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                      ..-...+.|++++.+..|+.+. ..+.|..+++..        . .....+.....-.....+++  ++.+|+.+....+
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------~-~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~  623 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------G-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINE  623 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C-SCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------C-ceEEEecCCCccCCCCEEEE--eCCEEEEEECCCC
Confidence            4446788999998777777764 456798888863        1 11111111111111123444  4557777766678


Q ss_pred             eEEEEECCCCeeEEEEecCCCCceeEE-EECCC
Q psy2110         439 ALYIWEKSVGNLVKILHGTKGELLLDV-VWHPV  470 (622)
Q Consensus       439 ~i~iwd~~~~~~~~~~~~~~~~~v~~v-~~sp~  470 (622)
                      .|+..+..+|+.+..+...... ...| .++|.
T Consensus       624 ~I~~~dk~tG~~~~~l~~~l~~-P~~i~v~h~~  655 (791)
T 3m0c_C          624 AIFSANRLTGSDVNLLAENLLS-PEDMVLFHNL  655 (791)
T ss_dssp             EEEEEETTTCCCCEEEECSCSC-CCCEEEESGG
T ss_pred             EEEEEeCCCCcceEEeecCCCC-ceeEeeeccc
Confidence            8999998888777777544333 3334 34443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.54  E-value=5.7e-05  Score=75.44  Aligned_cols=240  Identities=10%  Similarity=0.052  Sum_probs=140.0

Q ss_pred             CeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC---C-cEEEEEecCCc
Q psy2110         238 PVCSISWSRN--GYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR---H-AAVLVDTDGDH  311 (622)
Q Consensus       238 ~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~-~i~~~d~~~~~  311 (622)
                      ....++|+++  ...|+.+...+.|+.+|..+++.............+++++++. ++++....   . .+..++.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            4578999984  4456665544899999998888776655556789999999998 66655422   1 23333322211


Q ss_pred             e-eecccCCCCceEEEEEee-CCCEEEEEecCCeEEEEeCCCccEEEEE-ec-CCCCEEEEEEcCCCCEEEEE-eCCCcE
Q psy2110         312 Q-IVPIDEDSDLSIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASF-KA-STTAIKSIEFARRGNCLLVN-TGDRLI  386 (622)
Q Consensus       312 ~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~s~~~~~l~~~-~~d~~i  386 (622)
                      . ...+. .......+++++ +|.++++-..++.|+.++..++.....+ .. ....-..++|+|++++|+++ ...+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1 00111 123344578889 6776666667789999999877763333 21 12223479999999966655 456789


Q ss_pred             EEEecccccccCCCCCCCcceeeecc------c-------cceeeeeEEE---------cCCCCeEEEeeCCCCeEEEEE
Q psy2110         387 RVYNHQEVLNAGKDGDPEPIQKLQDL------V-------NKTMWKKCCF---------SGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       387 ~i~d~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~---------spdg~~l~~~~~~d~~i~iwd  444 (622)
                      +.+++....     +.......+.+.      .       .-.....+++         .++|.+.++-.. .+.|+.++
T Consensus       298 ~~~~~d~~~-----~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-n~~I~~~~  371 (433)
T 4hw6_A          298 YRVDYNRET-----GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-SHTVRVLT  371 (433)
T ss_dssp             EEEEBCTTT-----CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-TTEEEEEC
T ss_pred             EEEeCCCCC-----cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-CCEEEEEC
Confidence            998865210     000000011100      0       0011245788         667766555544 78999998


Q ss_pred             CCCCeeEEEEecCC---------C--------CceeEEEECC-CCCEEEEEe-CCcEEEeec
Q psy2110         445 KSVGNLVKILHGTK---------G--------ELLLDVVWHP-VRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       445 ~~~~~~~~~~~~~~---------~--------~~v~~v~~sp-~~~~l~s~~-dg~v~iw~~  487 (622)
                      . +|.. ..+.+..         +        .....|+++| ++.++++-. .+.|+..++
T Consensus       372 ~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          372 P-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             T-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             C-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            5 5653 3443321         0        1267899994 554444433 677877765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.50  E-value=0.00039  Score=66.72  Aligned_cols=267  Identities=10%  Similarity=0.038  Sum_probs=145.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec----cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS----AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      .+.++.|.+.+..+++| ..|.| +...+.++.-..+.    .....+.++.+.+ +. ++.++..+.|.. ....|+.-
T Consensus        37 ~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~tW  111 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQSW  111 (327)
T ss_dssp             CEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTSSC
T ss_pred             cEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCCCc
Confidence            47888998888877755 56654 33333333212221    1244688999976 43 444455664443 33444433


Q ss_pred             EEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110         272 QKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV  346 (622)
Q Consensus       272 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  346 (622)
                      ....    .+..+..+.+.+++. +++++ .++.++. ....+..- .........+..+.+.+++.+++++...+..+-
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S  188 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST  188 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred             eECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence            3332    234577787776554 44444 3444322 12222111 111223446778899999888877654443333


Q ss_pred             EeC--CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc--ccceeeeeEE
Q psy2110         347 LSC--PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL--VNKTMWKKCC  422 (622)
Q Consensus       347 ~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  422 (622)
                      .|-  .+.+.+.  ......+..+.+.++++.+ .++.+|.+++.+.+..         .....+...  .....+..+.
T Consensus       189 ~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G---------~tW~~~~~~~~~~~~~~~~v~  256 (327)
T 2xbg_A          189 WEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS---------ENWGELLSPLRRNSVGFLDLA  256 (327)
T ss_dssp             ECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE---------EEECCCBCTTSSCCSCEEEEE
T ss_pred             eCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC---------CeeEeccCCcccCCcceEEEE
Confidence            442  2333332  2345678899999998755 5556788777642211         111111111  1122356778


Q ss_pred             EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec---CCCCceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110         423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG---TKGELLLDVVWHPVRPIIASISSGVVSLWA  486 (622)
Q Consensus       423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~v~~sp~~~~l~s~~dg~v~iw~  486 (622)
                      +.+++..++++.  ++.| ++..+.|+.-..+..   .... +.++.|.+++.+++.+.+|.|.-++
T Consensus       257 ~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~-~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          257 YRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSN-FYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             ESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSC-CCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCC-eEEEEEECCCceEEEcCCceEEEEc
Confidence            998888777765  5556 455565655554442   2233 7889998666655555589776654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.49  E-value=0.00012  Score=66.48  Aligned_cols=200  Identities=10%  Similarity=0.091  Sum_probs=126.5

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEec--cCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      .+..++|+|++..|.+....++.|...|.. ++.++.+.-  ..+ .                 ..+++.+++.++++.-
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D-~-----------------EGIa~~~~g~~~vs~E   88 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKD-L-----------------ETIEYIGDNQFVISDE   88 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSS-E-----------------EEEEECSTTEEEEEET
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCC-h-----------------HHeEEeCCCEEEEEEC
Confidence            356799999888777765556899999998 888877642  222 2                 4888889998777766


Q ss_pred             CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC---CceEEEec----
Q psy2110         161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT---RGIAKIIS----  233 (622)
Q Consensus       161 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~---~~~~~~~~----  233 (622)
                      .++.+.++++.....+........+.  .........-.++|+|.++.|+++.......+|.+..   ...+..+.    
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~~~~~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKIKIPL--QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEEECCC--SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             CCCcEEEEEcCCCCeeeeeeeecccc--ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence            77889999876654321111110000  0011123467899999998888777665556666541   11122221    


Q ss_pred             ---cCCcCeeEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCC----------CCeEEEEEeCCCCeEEEEeeCC
Q psy2110         234 ---AHMHPVCSISWSRNGYKII-SASTDNNVCIWDVLTGECEQKYRFP----------SPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       234 ---~~~~~v~~~~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                         .+...+.++++.|....|+ .....+.|.++|.. ++.+..+...          .....+++.++|. ++++ +..
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~  243 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP  243 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC
Confidence               1334678999999655554 44456778889865 6677666633          2678999999996 5555 444


Q ss_pred             CcEEEEE
Q psy2110         300 HAAVLVD  306 (622)
Q Consensus       300 ~~i~~~d  306 (622)
                      +.++.+.
T Consensus       244 n~~y~f~  250 (255)
T 3qqz_A          244 NRFYRFT  250 (255)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            5555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.48  E-value=8.2e-05  Score=67.52  Aligned_cols=203  Identities=14%  Similarity=0.140  Sum_probs=130.6

Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE-  353 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  353 (622)
                      ....+..++++|++..++++...++.|..+|.. +..+..+. ........+++.+++.++++.-.++.+.++++.... 
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            345799999999988888888888899999988 54444442 223456678888888877776667889999876443 


Q ss_pred             --EEEEEe------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-----cccceeeee
Q psy2110         354 --LKASFK------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----LVNKTMWKK  420 (622)
Q Consensus       354 --~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  420 (622)
                        .+....      ..+.....++|+|.++.|+++.......+|.++....     . ..+..+..     ...-.....
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-----~-~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-----S-NELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-----S-SCCEEEECHHHHHTCCSSCCCE
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-----C-CceeeecchhhccccccCCcee
Confidence              223332      2244568999999998888877655556666552100     0 11121111     111123467


Q ss_pred             EEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC--------CceeEEEECCCCCEEEEEeCCcEEEee
Q psy2110         421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG--------ELLLDVVWHPVRPIIASISSGVVSLWA  486 (622)
Q Consensus       421 ~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~s~~dg~v~iw~  486 (622)
                      +++.|....+...+.....|.++|.. |+.+..+.-..+        .....|+|.++|.+.+++.-..++.+.
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence            89999766665555558899999965 666666543321        126889999999855554344455443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.43  E-value=0.00032  Score=75.14  Aligned_cols=224  Identities=7%  Similarity=-0.059  Sum_probs=135.4

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEecCCcc----cccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRG----IAKI  178 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~~----~~~~  178 (622)
                      ..|+..++........+......                  ..++|.+....|+ +-...+.|+.+++....    ....
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~------------------~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNV------------------VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSE------------------EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred             cceeEeeccCCcceeeecCCCce------------------EEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            46777777655544444443333                  4899998655554 44456778888876531    1111


Q ss_pred             cccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-
Q psy2110         179 ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-  256 (622)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-  256 (622)
                      +...           ......+++.+.++.|+.+ ...+.|.+.++........+.........|++.|.+.+|+.+.. 
T Consensus       466 i~~~-----------l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g  534 (791)
T 3m0c_C          466 ISRD-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  534 (791)
T ss_dssp             ECSS-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             EecC-----------CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence            1111           1234678898877655554 45788999998755544444444456889999997666666653 


Q ss_pred             C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCC--CCceEEEEEeeCC
Q psy2110         257 D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED--SDLSIVASFDRRG  332 (622)
Q Consensus       257 d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~  332 (622)
                      . +.|...++........+. .-.....|++.+.+..|+++-.....|..+++........+...  -.....+++  .+
T Consensus       535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~  612 (791)
T 3m0c_C          535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FE  612 (791)
T ss_dssp             SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ET
T ss_pred             CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eC
Confidence            2 678888887555444444 23578899999988888888777888999998765443333221  122334444  33


Q ss_pred             CEEE-EEecCCeEEEEeCCCccEEEEE
Q psy2110         333 QHVV-TGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       333 ~~l~-~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                      .+|+ +-...+.|...+..+++.+..+
T Consensus       613 ~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          613 DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            3443 3345567777776666544444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00024  Score=70.93  Aligned_cols=255  Identities=12%  Similarity=0.073  Sum_probs=143.2

Q ss_pred             ceEEEEECCC-CCEEEEEe-CCCeEEEEEcCCCceEEEeccC---CcCeeEEEE-------cCCCCEEEEEeCCC-----
Q psy2110         196 LAVTCAFNKR-GTLLAVGC-NDGRIVLWDFLTRGIAKIISAH---MHPVCSISW-------SRNGYKIISASTDN-----  258 (622)
Q Consensus       196 ~v~~~~~s~~-g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------s~~~~~l~s~~~d~-----  258 (622)
                      ....++|+|. +..|+++. ..+.|++.|+.++.....+...   ......++|       +++|.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3578999983 44454444 3467888998887766554432   235789999       99999777776554     


Q ss_pred             --cEEEEECCC-CcEE-----EEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec-------CCce-----------
Q psy2110         259 --NVCIWDVLT-GECE-----QKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-------GDHQ-----------  312 (622)
Q Consensus       259 --~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~-------~~~~-----------  312 (622)
                        .|.+++... +...     +.+..-.....++++|++..++++...++.+..+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              266665443 2221     2222112345778899888888888888999999987       3332           


Q ss_pred             ---eecccCCCCceEEEEEeeCCCEEE-EEecCCeEEEEeC--CCccE--EEEEecC---C------------CCEE-EE
Q psy2110         313 ---IVPIDEDSDLSIVASFDRRGQHVV-TGNSKGKVLVLSC--PALEL--KASFKAS---T------------TAIK-SI  368 (622)
Q Consensus       313 ---~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~~--~~~~~~~---~------------~~i~-~~  368 (622)
                         +... ........++++|+|++|+ +-+..+.|+.++.  ..+..  ...+-+.   .            ..-. .+
T Consensus       300 ~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          300 FKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             EEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             cceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence               1111 2234457899999999644 4456678888654  33322  1222221   1            1233 44


Q ss_pred             EEc-------CCCCEEEEEeCCCcEEEEecccccccCCCCCCCc-----ce--ee-ec-ccc---ceeeeeEEEcCCCCe
Q psy2110         369 EFA-------RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP-----IQ--KL-QD-LVN---KTMWKKCCFSGDGEY  429 (622)
Q Consensus       369 ~~s-------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~--~~-~~-~~~---~~~~~~~~~spdg~~  429 (622)
                      +..       +++.++++-..++.|+.++....... ..+....     ..  -+ .+ ...   -.....+++++++..
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~T-iaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVST-YAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEE-EEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeCCCCEEE-EecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            554       45665555566788999985421100 0000000     00  00 00 000   011246788887334


Q ss_pred             EEEeeCCCCeEEEEECCCCeeEE
Q psy2110         430 VCAGSARQHALYIWEKSVGNLVK  452 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~~~~~  452 (622)
                      |+.+....+.|+.++++....+.
T Consensus       458 lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          458 FYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEeCCCCEEEEEECCCCcccc
Confidence            44454457888888877654443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.38  E-value=0.00018  Score=67.71  Aligned_cols=202  Identities=11%  Similarity=0.184  Sum_probs=128.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCC----CCe--E-EEEeeC--CCcEEEEEecC-Cceeecc
Q psy2110         247 NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR----NDH--M-FLVCPM--RHAAVLVDTDG-DHQIVPI  316 (622)
Q Consensus       247 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-~~~~~~--~~~i~~~d~~~-~~~~~~~  316 (622)
                      ...+++.....+-+.+||+ +|+.++.+.. +.+..+..-|.    ++.  + +++...  ++.+.+|++.. ...+..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            4456777777889999999 8888888764 66777777662    221  2 333344  57899998842 2223333


Q ss_pred             cC-------CCCceEEEEE--eeC-CC-EEEEEecCCeEEEEeCC-------CccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         317 DE-------DSDLSIVASF--DRR-GQ-HVVTGNSKGKVLVLSCP-------ALELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       317 ~~-------~~~~~~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      ..       ....++.+|+  ++. ++ ++++...+|.+..|++.       +.++++++... +.+..+...+....|+
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLY  195 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEE
Confidence            11       1145556676  664 44 67888889999998872       34567777754 5688889999888999


Q ss_pred             EEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE--cCCCC-eEEEeeCCCCeEEEEECC-CCeeEEEE
Q psy2110         379 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF--SGDGE-YVCAGSARQHALYIWEKS-VGNLVKIL  454 (622)
Q Consensus       379 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--spdg~-~l~~~~~~d~~i~iwd~~-~~~~~~~~  454 (622)
                      ++-.+.-|..|+.+...    ......+..+....-...+-.+++  .++|+ ||++++..++++.+||.. +.+.+..+
T Consensus       196 v~eEd~GIw~~da~p~~----~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEETTTEEEEEECSTTS----CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EecccceEEEEeCCcCC----CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            99998666666654200    001122322221111112334455  66777 888888667899999996 66777766


Q ss_pred             e
Q psy2110         455 H  455 (622)
Q Consensus       455 ~  455 (622)
                      .
T Consensus       272 ~  272 (355)
T 3amr_A          272 R  272 (355)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00016  Score=72.34  Aligned_cols=240  Identities=12%  Similarity=0.098  Sum_probs=145.9

Q ss_pred             ceeEEEEcC-CCCEEEEeeC-CCcEEEEecCCcccccccccccCCCcccccccccceEEEEE-------CCCCCEEEEEe
Q psy2110         143 LAVTCAFNK-RGTLLAVGCN-DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF-------NKRGTLLAVGC  213 (622)
Q Consensus       143 ~v~~~~~s~-d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~g~~l~~~~  213 (622)
                      ....|+|+| +...|+.+.. .+.|++.|+.++............        ......++|       +++|+.|+++.
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~--------~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP--------TNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS--------CSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc--------cCCCcEEEEeecccccCCCCCEEEEEe
Confidence            346899998 3555555443 467888888876555433321100        124688999       99999777776


Q ss_pred             CCC-------eEEEEEcCC-CceE-----EEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCcE--
Q psy2110         214 NDG-------RIVLWDFLT-RGIA-----KIISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVL-------TGEC--  270 (622)
Q Consensus       214 ~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~-------~~~~--  270 (622)
                      ..+       .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|+.       ++..  
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            554       255665333 2221     222221 23457888995 4445555567789999987       5543  


Q ss_pred             ---------E-EEEe--CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-ee---eccc---CC------------
Q psy2110         271 ---------E-QKYR--FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QI---VPID---ED------------  319 (622)
Q Consensus       271 ---------~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~---~~~~---~~------------  319 (622)
                               . ..+.  .......++|+|+++.++++-...+.|+.++..... .+   ..+.   ..            
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                     1 2233  234568999999999778888888899997765422 11   1110   00            


Q ss_pred             CCceE-EEEEe-------eCCCEEEEEecCCeEEEEeCCCccEEEEEecC------------------------CCCEEE
Q psy2110         320 SDLSI-VASFD-------RRGQHVVTGNSKGKVLVLSCPALELKASFKAS------------------------TTAIKS  367 (622)
Q Consensus       320 ~~~~~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------~~~i~~  367 (622)
                      -.... .++..       ++|.++++-...++|+.++ .++. +.++-+.                        -..-..
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence            01223 44554       5667777777788999998 4564 3344322                        123568


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEeccc
Q psy2110         368 IEFARR-GNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       368 ~~~s~~-~~~l~~~~~d~~i~i~d~~~  393 (622)
                      |+++++ |.++++-+.+..||.+++..
T Consensus       449 Iavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            899986 66555556678899988873

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.31  E-value=0.0026  Score=60.88  Aligned_cols=268  Identities=10%  Similarity=-0.022  Sum_probs=137.7

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .++.|.+++..+++ +..|.| +.....|+.-.........       ....+..+.|.+ +..++ ++..+.|.. ..+
T Consensus        39 ~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~-------~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           39 LDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDH-------SDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             EEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSC-------CCCEEEEEEEET-TEEEE-EEETTEEEE-ESS
T ss_pred             EEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCC-------CCccEEEEEecC-CeEEE-EECCCeEEE-ECC
Confidence            58888877777775 456654 2233333322222111100       012467888876 44444 445564433 223


Q ss_pred             CCceEEEec---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeCC
Q psy2110         225 TRGIAKIIS---AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPMR  299 (622)
Q Consensus       225 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~  299 (622)
                      .++.-..+.   .+.+.+..+.+.+++..++.+ .++.|.. ....|+.-....  ....+..+.+.+++. +++++ ..
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~  182 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SR  182 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TT
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CC
Confidence            333222222   233457788887777655554 4565432 223344333333  445788999999775 34444 44


Q ss_pred             CcEEEE-Ee--cCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----CCCCEEEEEEcC
Q psy2110         300 HAAVLV-DT--DGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----STTAIKSIEFAR  372 (622)
Q Consensus       300 ~~i~~~-d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~  372 (622)
                      +.++.- |-  .+-..+.  ......+..+.++++++.+++ +.+|.+++.+...++....+..    +...+.++++.+
T Consensus       183 G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          183 GSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             SSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             CcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            544433 32  1112221  123456778888888876654 5678777764333443333321    223588999998


Q ss_pred             CCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         373 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       373 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                      ++..++++ .++.|. +..+.         ...-..+.... ....+.++.|.+++++++++.  +|.|.-++
T Consensus       260 ~~~~~~~g-~~g~i~-~S~Dg---------G~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~--~G~i~~~~  319 (327)
T 2xbg_A          260 PNEVWLAG-GAGALL-CSQDG---------GQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ--KGILLRYV  319 (327)
T ss_dssp             SSCEEEEE-STTCEE-EESST---------TSSCEECGGGTTSSSCCCEEEEEETTEEEEECS--TTEEEEEC
T ss_pred             CCEEEEEe-CCCeEE-EeCCC---------CcccEEcCccCCCCCCeEEEEEECCCceEEEcC--CceEEEEc
Confidence            87766554 466663 33331         12222222111 123345677876666555544  77776655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.20  E-value=6.6e-06  Score=87.59  Aligned_cols=214  Identities=6%  Similarity=-0.089  Sum_probs=126.1

Q ss_pred             eEEEEcCCCCEEEEee-CCCcEEEEecCC----cccccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeE
Q psy2110         145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLT----RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRI  218 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i  218 (622)
                      ..++|.+.+..|+.+. ..+.|+.+++..    ......+....           .....+++.+.+..| ++-...+.|
T Consensus       409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-----------~~P~glavD~~~g~LY~tD~~~~~I  477 (699)
T 1n7d_A          409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-----------QAPDGLAVDWIHSNIYWTDSVLGTV  477 (699)
T ss_dssp             CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC-------------CCCEECCCSSSBCEECCTTTSCE
T ss_pred             EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-----------CCcceEEEEeeCCcEEEEeccCCeE
Confidence            4889998776666554 457898888765    11111111100           123467887654444 444456789


Q ss_pred             EEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C-CcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEE
Q psy2110         219 VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D-NNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       219 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d-~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  295 (622)
                      .++++........+.........|++.|.+.+|+.+.. . +.|..+++........+. .-.....|+|+|++..++++
T Consensus       478 ~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             EEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE
T ss_pred             EEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE
Confidence            99998755444434333345678999986665555443 2 678887775433222222 22346789999998888888


Q ss_pred             eeCCCcEEEEEecCCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                      -...+.|..+++........+.  ........+++..+ .++++....+.|..++..+++.+..+........+|++
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence            8888899999987543222221  11122334455443 34445556678999998888877766543323334433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.15  E-value=1.6e-05  Score=84.75  Aligned_cols=218  Identities=10%  Similarity=-0.024  Sum_probs=130.8

Q ss_pred             CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC----CceeecccCCCCceEEEEEeeCC
Q psy2110         257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG----DHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      .+.|+..++.+.+....+.....+..++|++.+..++++-...+.|+.+++.+    ......+.........+++++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            46788888887776655555556778999998887777777788999999875    22222222222234467787544


Q ss_pred             -CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecccccccCCCCCCCcceee
Q psy2110         333 -QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG--DRLIRVYNHQEVLNAGKDGDPEPIQKL  409 (622)
Q Consensus       333 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~  409 (622)
                       +++++-...+.|.++++........+.........|+++|.+.+|+.+..  .+.|.++++..        ..  ...+
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--------~~--~~~l  534 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--------VD--IYSL  534 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--------CC--CCEE
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--------CC--eeEE
Confidence             44444456678999998755444433333345678899997665655543  26777777652        11  1111


Q ss_pred             eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec--CCCCceeEEEECCCCCEEEEEe--CCcEEEe
Q psy2110         410 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG--TKGELLLDVVWHPVRPIIASIS--SGVVSLW  485 (622)
Q Consensus       410 ~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw  485 (622)
                      ... .-.....++|+|++..|+.+....+.|+++++........+..  .... ...|++..+  .|+.+.  .+.|..+
T Consensus       535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~-P~glavd~~--~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFED--KVFWTDIINEAIFSA  610 (699)
T ss_dssp             SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSS-CCCCEEETT--EEEEECSTTTCEEEE
T ss_pred             EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCC-ceEeEEECC--EEEEEeCCCCeEEEE
Confidence            100 1112246899999888877776678999999875443333321  1122 445666443  444443  5778877


Q ss_pred             ecC
Q psy2110         486 AQN  488 (622)
Q Consensus       486 ~~~  488 (622)
                      +..
T Consensus       611 d~~  613 (699)
T 1n7d_A          611 NRL  613 (699)
T ss_dssp             ETT
T ss_pred             Ecc
Confidence            753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.12  E-value=0.0012  Score=63.85  Aligned_cols=225  Identities=12%  Similarity=0.071  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeCC------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCND------  215 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~d------  215 (622)
                      +.++|.|+|+++++ ...|.|++++  ++..........   .   .........++|+|+   +..|+++...      
T Consensus        34 ~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v---~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           34 WALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSV---Y---HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             EEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCC---C---CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             eEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceE---e---ecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            59999999985554 5669999988  333211110000   0   001134688999998   5555555432      


Q ss_pred             CeEEEEEcCCCc-----e-EEEec---cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCC-----
Q psy2110         216 GRIVLWDFLTRG-----I-AKIIS---AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTG-----  268 (622)
Q Consensus       216 g~i~iwd~~~~~-----~-~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~-----  268 (622)
                      +.|..++...+.     . +..+.   ...+....++|.|||.+.++.+..             |.|.-++....     
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            578888876432     1 12232   112234689999999765554321             45555555420     


Q ss_pred             ---------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcE------EEEEecCCc------------------eeec
Q psy2110         269 ---------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAA------VLVDTDGDH------------------QIVP  315 (622)
Q Consensus       269 ---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i------~~~d~~~~~------------------~~~~  315 (622)
                               ..+... .......++|+|+...++++-.....+      .+.-+..+.                  +...
T Consensus       185 pf~~~~~~~~~i~a~-G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          185 PFLGRRGARPEVYSL-GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TTTTCTTSCTTEEEE-CCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             cccCCCCCCccEEEE-cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence                     011111 112356788999444455554333321      122222111                  1111


Q ss_pred             ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE------EEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL------KASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      + .+......++| .+|..+++....+.|...++.....      ...+-.....+..+++.|||.++++..
T Consensus       264 ~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            2 11223456666 5676666666667787777653321      122223346789999999998666653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.11  E-value=0.0012  Score=62.26  Aligned_cols=192  Identities=8%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECC----CCCE--E-EEEe-C--CCeEEEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK----RGTL--L-AVGC-N--DGRIVLW  221 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~~--l-~~~~-~--dg~i~iw  221 (622)
                      ...+++.....+-+.+||+ +|+.++.+....             +..+..-|    .|+.  + ++.. .  +++|.+|
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~-------------~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf  104 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGK-------------LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY  104 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSC-------------EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCC-------------cccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence            3446666677788999999 777777764311             22222222    2332  3 3333 3  5789999


Q ss_pred             EcC--CCceEEEecc------CC-cCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCcEEEEEeCCCCeE
Q psy2110         222 DFL--TRGIAKIISA------HM-HPVCSISW--SRN-GY-KIISASTDNNVCIWDVL-------TGECEQKYRFPSPIL  281 (622)
Q Consensus       222 d~~--~~~~~~~~~~------~~-~~v~~~~~--s~~-~~-~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~v~  281 (622)
                      ++.  ++. +..+..      .. ..+..+++  ++. ++ +++....+|.+..|++.       +.+.++.+...+.+.
T Consensus       105 ~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E  183 (355)
T 3amr_A          105 AIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE  183 (355)
T ss_dssp             EECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE
T ss_pred             EECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc
Confidence            874  333 444421      11 56677888  664 44 67778888999999882       346678888888999


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecC-----Cceeeccc--CCCCceEEEEE--eeCCC-EEEEEe-cCCeEEEEeCC
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDG-----DHQIVPID--EDSDLSIVASF--DRRGQ-HVVTGN-SKGKVLVLSCP  350 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----~~~~~~~~--~~~~~~~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~  350 (622)
                      .+...+.... ++++..+..|..++.+.     ...+..+.  .-...+..+++  .++++ +|++.+ .+++..+||..
T Consensus       184 gcvvDd~~g~-Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          184 GMAADDEYGR-LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTTE-EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEcCCCCe-EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999987765 55566666677777552     23333322  11234666776  45555 566655 56799999986


Q ss_pred             -CccEEEEEe
Q psy2110         351 -ALELKASFK  359 (622)
Q Consensus       351 -~~~~~~~~~  359 (622)
                       +.+.+..|.
T Consensus       263 ~~~~~vg~f~  272 (355)
T 3amr_A          263 GKNKYVADFR  272 (355)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence             566666665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.05  E-value=0.0055  Score=57.19  Aligned_cols=157  Identities=10%  Similarity=0.091  Sum_probs=107.7

Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCC---------CeEEEEE---eCCCCeEEEEee--
Q psy2110         233 SAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPS---------PILKVQF---HPRNDHMFLVCP--  297 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~---------~v~~~~~---~~~~~~~~~~~~--  297 (622)
                      ......-.+++|.+....|+.++ ..++|..|+...+..... ..+.         .+..+.|   .|+++ ++++..  
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~   86 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNA   86 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEET
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEccc
Confidence            33444556789988556666666 689999999876654444 3222         3578999   57744 555433  


Q ss_pred             -----------CCCcEEEEEec---CCceeecccC-------------CCCceEEEEEeeCCCEEEEEecC-CeEEEEeC
Q psy2110         298 -----------MRHAAVLVDTD---GDHQIVPIDE-------------DSDLSIVASFDRRGQHVVTGNSK-GKVLVLSC  349 (622)
Q Consensus       298 -----------~~~~i~~~d~~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~  349 (622)
                                 .+..+..+|+.   +++.+.....             .......++.+++|+..++++.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       25678899998   5554432221             12347789999999999999988 88888886


Q ss_pred             CCccEEEEEec------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         350 PALELKASFKA------STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       350 ~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      ... .+..+..      .....+.|+++|+|+.|++....+.|..+|+.
T Consensus       167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            643 3332221      12236799999999999998779999999987

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.04  E-value=0.006  Score=58.90  Aligned_cols=227  Identities=13%  Similarity=0.090  Sum_probs=121.7

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC----C--
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN----D--  215 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~----d--  215 (622)
                      +.++|.|+|++++ +..+|.|++++ .++.  ..+....  ..   .........++++|+   +..|+++..    +  
T Consensus        32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--VA---NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--ee---ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            5999999998544 45669999987 3443  2221100  00   000124678999998   555555443    2  


Q ss_pred             --CeEEEEEcCCC--c-----eE-EEec-cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCC---
Q psy2110         216 --GRIVLWDFLTR--G-----IA-KIIS-AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTG---  268 (622)
Q Consensus       216 --g~i~iwd~~~~--~-----~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~---  268 (622)
                        ..|..|+....  .     .+ ..+. ...+....|+|.|||.++++.+..             |.|.-++....   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence              56777877644  1     11 1122 112235679999999866664321             34555554321   


Q ss_pred             ------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC---cEEEEEecC----------------CceeecccCCCCce
Q psy2110         269 ------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH---AAVLVDTDG----------------DHQIVPIDEDSDLS  323 (622)
Q Consensus       269 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~----------------~~~~~~~~~~~~~~  323 (622)
                            ..+....+ .....++|+|+...++++-....   .+.+.....                ..++..+.......
T Consensus       183 ~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          183 DNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             TSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence                  01222212 33567999994444555433222   233222110                01112221123345


Q ss_pred             EEEEEe-------eCCCEEEEEecCCeEEEEeCCCc-cEE--EEEe-cCCCCEEEEEEcCCCCEEEEEe
Q psy2110         324 IVASFD-------RRGQHVVTGNSKGKVLVLSCPAL-ELK--ASFK-ASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       324 ~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~-~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      ..++|.       .+|.++++.-..+.|...++... +..  ..+. .....+..+++.|||.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            667773       56777777667778888888753 332  2222 2245789999999997665553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.01  E-value=0.009  Score=57.72  Aligned_cols=232  Identities=16%  Similarity=0.131  Sum_probs=122.0

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe------CCCCeEEEEEeCC---CCeEEEEeeCC-----CcE
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR------FPSPILKVQFHPR---NDHMFLVCPMR-----HAA  302 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~---~~~~~~~~~~~-----~~i  302 (622)
                      .....++|.|+|+. +.+...|.|++++  .++......      .......++++|+   +..++++....     ..|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            35679999999984 4455679999998  444322211      1356889999998   66666665543     567


Q ss_pred             EEEEecCC-----ceeec-cc---CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc--------
Q psy2110         303 VLVDTDGD-----HQIVP-ID---EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL--------  352 (622)
Q Consensus       303 ~~~d~~~~-----~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------  352 (622)
                      ..++....     +.+.. +.   ........++|+|+|.++++.+.             .|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            77777643     11211 22   11223357899999976666432             256666665420        


Q ss_pred             ----cEEEEE-ecCCCCEEEEEEcC-CCCEEEEEeCCCcE------EEEecccccccC---------CCCCCCcceeeec
Q psy2110         353 ----ELKASF-KASTTAIKSIEFAR-RGNCLLVNTGDRLI------RVYNHQEVLNAG---------KDGDPEPIQKLQD  411 (622)
Q Consensus       353 ----~~~~~~-~~~~~~i~~~~~s~-~~~~l~~~~~d~~i------~i~d~~~~~~~~---------~~~~~~~~~~~~~  411 (622)
                          .....+ .++ .....++|+| ++.++++-.....+      .+.-+......+         ..+...++..+  
T Consensus       188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~--  264 (352)
T 2ism_A          188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW--  264 (352)
T ss_dssp             TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--
T ss_pred             CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--
Confidence                000111 122 2356789999 66655554333321      122222111000         00001122222  


Q ss_pred             cccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCee------EEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         412 LVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL------VKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                       ..+.....++| .+|.++++... .+.|...++.....      ...+-..... +.++++.|+|.+.++..
T Consensus       265 -~~~~ap~G~~~-~~G~l~v~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r-p~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 -PQGFPPGNLAF-FRGDLYVAGLR-GQALLRLVLEGERGRWRVLRVETALSGFGR-LREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TTCCCEEEEEE-ETTEEEEEETT-TTEEEEEEEEEETTEEEEEEEEEEEESSCC-EEEEEECTTSCEEEEEC
T ss_pred             -CCCCCCcceEE-ECCEEEEEECC-CCEEEEEEECCCCcceeecchheecccCCC-eeEEEECCCCcEEEEEe
Confidence             11222345666 46665554443 67787777654321      1222222334 89999999998766654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.95  E-value=0.0098  Score=55.77  Aligned_cols=245  Identities=8%  Similarity=0.025  Sum_probs=139.1

Q ss_pred             CCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC--------------CcEEEEECC
Q psy2110         203 NKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD--------------NNVCIWDVL  266 (622)
Q Consensus       203 s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------~~i~iwd~~  266 (622)
                      +.+|..|+....  ++.|+..+... .....+...  .  +--++++|.+|+.+...              ..|+..++.
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg-~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDG-SNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTS-CSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCC-CCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            346777776642  45566666433 333444322  1  23457789988877643              367888887


Q ss_pred             CCcEEEEEeCCCCeEEEEEeCCCCeEEEEe---eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec-CC
Q psy2110         267 TGECEQKYRFPSPILKVQFHPRNDHMFLVC---PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS-KG  342 (622)
Q Consensus       267 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg  342 (622)
                      .++........    +..++++++.++.+.   .....|+..++....... +..+..    .+++++++.|+-.+. ..
T Consensus        97 g~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~-lt~~~~----~~~~~~g~~iy~t~~g~~  167 (302)
T 3s25_A           97 GHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-IKNHYL----FTCNTSDRYFYYNNPKNG  167 (302)
T ss_dssp             SCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE-EESSCC----CCSEEETTEEEEECTTTC
T ss_pred             CCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE-EeCCCc----eEeeEECCEEEEEeCCCc
Confidence            76644433322    236778888877776   344456666665433222 222221    346788888876654 57


Q ss_pred             eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEecccccccCCCCCCCcceeeeccccceeeee
Q psy2110         343 KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD--RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK  420 (622)
Q Consensus       343 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (622)
                      .|.+.++..+.....+.   +... ..++|++.+|+.....  ..|..-+++.          ...+.+..    ..+  
T Consensus       168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG----------~~~~~Lt~----~~~--  227 (302)
T 3s25_A          168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN----------PNPVVLTE----ANI--  227 (302)
T ss_dssp             CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS----------CCCEECSC----SCE--
T ss_pred             eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC----------CCeEEEeC----CCc--
Confidence            88888887665443333   2222 3466999988887654  3455555552          11122211    111  


Q ss_pred             EEEcCCCCeEEEee-CCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe--CCcEEEeec
Q psy2110         421 CCFSGDGEYVCAGS-ARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQ  487 (622)
Q Consensus       421 ~~~spdg~~l~~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~  487 (622)
                      ..|+|+|++|..+. ...+.|+..++..........+   . +.  ++++.+.+|+...  .+.|..-++
T Consensus       228 ~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~-~~--~i~i~~d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          228 EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---E-FC--NINVTSQYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---C-EE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred             ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---c-cc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence            25889999998763 2246788888865443333333   1 33  4555777777776  455443333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.94  E-value=0.0062  Score=56.85  Aligned_cols=202  Identities=9%  Similarity=0.061  Sum_probs=123.1

Q ss_pred             eEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEE---CCCCCEEEEEe-------
Q psy2110         145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF---NKRGTLLAVGC-------  213 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~g~~l~~~~-------  213 (622)
                      .+++|.+....|..++ ..++|..|+...+......-....  ..+  .....+..+.|   .|+++++++..       
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s--~~g--~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS--SNG--DGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC--CSS--CCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc--ccC--CCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            4789988666666666 789999999875543322111100  000  00123578999   68887777543       


Q ss_pred             ------CCCeEEEEEcC---CCceEEEec--c-----------CCcCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCcE
Q psy2110         214 ------NDGRIVLWDFL---TRGIAKIIS--A-----------HMHPVCSISWSRNGYKIISASTD-NNVCIWDVLTGEC  270 (622)
Q Consensus       214 ------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~  270 (622)
                            .+..+..||+.   +++.+....  .           -......++..++|+..++++.. +.|...+......
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence                  15779999998   777655433  1           11347899999999999988888 8887777654433


Q ss_pred             EEEEe-C-----CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce-eeccc--C---CCCceEE-EEEeeCCCEEE-
Q psy2110         271 EQKYR-F-----PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ-IVPID--E---DSDLSIV-ASFDRRGQHVV-  336 (622)
Q Consensus       271 ~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~--~---~~~~~~~-~~~~~~~~~l~-  336 (622)
                      ...+. .     ....+.++++|++..+++..+ .+.+..+|+..... .....  +   ....... +....+|+.++ 
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV  250 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV  250 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence            22221 1     123669999999987777766 99999999885322 01111  1   1122233 34445777744 


Q ss_pred             EEecCCeEEEEeCCC
Q psy2110         337 TGNSKGKVLVLSCPA  351 (622)
Q Consensus       337 ~~~~dg~i~i~d~~~  351 (622)
                      +....+.+.+.+...
T Consensus       251 ~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          251 GARAPYAISFRSWDN  265 (334)
T ss_dssp             EEETTEEEEEECSST
T ss_pred             EcCCCCEEEEECCCC
Confidence            444455555555443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.92  E-value=0.0021  Score=61.53  Aligned_cols=205  Identities=11%  Similarity=0.116  Sum_probs=115.4

Q ss_pred             CeeEEEEcCCCCEEEEE------------eCCCcEEEEECCC--CcEEEEEeC--------CCCeEEEEEeC--CCC-eE
Q psy2110         238 PVCSISWSRNGYKIISA------------STDNNVCIWDVLT--GECEQKYRF--------PSPILKVQFHP--RND-HM  292 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~------------~~d~~i~iwd~~~--~~~~~~~~~--------~~~v~~~~~~~--~~~-~~  292 (622)
                      ....+...++|..++++            ..+|.|.++|..+  ++. ..+..        ......+.+.+  ++. ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            34556667766444443            1688999999873  332 22221        13567777766  344 34


Q ss_pred             EEEeeC--CCcEEEEEecCCce----eecccC-CCCceEEEEEeeCCCEEEEEe-----------------cCCeEEEEe
Q psy2110         293 FLVCPM--RHAAVLVDTDGDHQ----IVPIDE-DSDLSIVASFDRRGQHVVTGN-----------------SKGKVLVLS  348 (622)
Q Consensus       293 ~~~~~~--~~~i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d  348 (622)
                      +++...  +..+.+|++.....    +..+.. .-.....+.+.++|.++++..                 ..|.|.-++
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444333  45677877764321    222222 223467889999998877754                 125566666


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcC-C
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSG-D  426 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-d  426 (622)
                      ..  +.. .+...-..-+.++|+||++.|+++. ..+.|+.|++..      .+.....+.+. .  ....-.+++.+ +
T Consensus       210 ~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~------~g~l~~~~~~~-~--~g~PDGi~vD~e~  277 (355)
T 3sre_A          210 PN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA------NWTLTPLRVLS-F--DTLVDNISVDPVT  277 (355)
T ss_dssp             TT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT------TSCEEEEEEEE-C--SSEEEEEEECTTT
T ss_pred             CC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC------CCcEecCEEEe-C--CCCCceEEEeCCC
Confidence            53  322 2222234568999999999888775 478899999873      11111222221 1  22335678999 5


Q ss_pred             CCeEEEeeCCCCeEEEEECC--CCeeEEEEe
Q psy2110         427 GEYVCAGSARQHALYIWEKS--VGNLVKILH  455 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~--~~~~~~~~~  455 (622)
                      |++.+++..+.+.|..|+..  .+..+..++
T Consensus       278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            98877665323344445443  244444444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.91  E-value=0.0076  Score=56.54  Aligned_cols=210  Identities=10%  Similarity=0.053  Sum_probs=122.7

Q ss_pred             EcCCCCEEEEeeC--CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----------
Q psy2110         149 FNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----------  215 (622)
Q Consensus       149 ~s~d~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----------  215 (622)
                      |+.++.+|+....  ++.|...+.... ....+..               -.+--++++|.+|+.+...           
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~---------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~   84 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSN---------------DTAMYINADKNYVYYVRNNNQKITSQTFFS   84 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEE---------------EEEEEEEECSSEEEEEEECC------CCSS
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccC---------------CceeeEEEcCCEEEEEECCCCcccccceec
Confidence            4456777766542  344444444332 2333322               1234568899988887653           


Q ss_pred             ---CeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCC
Q psy2110         216 ---GRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR  288 (622)
Q Consensus       216 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  288 (622)
                         ..|+..++...+.. .+...    .+..|++++++|+...    ....|...++......+......    ..++++
T Consensus        85 ~n~~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~  155 (302)
T 3s25_A           85 YDRNSLCRIKRNGHGST-VLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTS  155 (302)
T ss_dssp             CCSEEEEEEETTSCCCE-EEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEE
T ss_pred             cCCCeEEEEeCCCCcce-EeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEE
Confidence               35777777655433 23222    1236777899888776    23456777776555444444432    456888


Q ss_pred             CCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC--CeEEEEeCCCccEEEEEecCCCCEE
Q psy2110         289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK--GKVLVLSCPALELKASFKASTTAIK  366 (622)
Q Consensus       289 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~  366 (622)
                      ++.++.+......|...++........+..   .. ...+.|++.+|+-....  ..|..-++..... ..+..  ..+ 
T Consensus       156 g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~-  227 (302)
T 3s25_A          156 DRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI-  227 (302)
T ss_dssp             TTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE-
T ss_pred             CCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc-
Confidence            988887776567888888876654433322   22 23466889888776543  3677777765442 33322  233 


Q ss_pred             EEEEcCCCCEEEEEeC--CCcEEEEecc
Q psy2110         367 SIEFARRGNCLLVNTG--DRLIRVYNHQ  392 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~--d~~i~i~d~~  392 (622)
                       ..|+|++.+|..++.  ...|..-+++
T Consensus       228 -~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          228 -EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             -EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             -ceEEECCCEEEEEECCCCcEEEEEECC
Confidence             347888998887643  3556666665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.89  E-value=0.02  Score=55.14  Aligned_cols=255  Identities=7%  Similarity=0.030  Sum_probs=162.4

Q ss_pred             CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccc
Q psy2110         103 QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH  182 (622)
Q Consensus       103 ~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~  182 (622)
                      +..|.|.|+.++..+.+..-..+                    +.-.+|..+.||.-. ..++.|+|+++...++.+...
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~Ad--------------------sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~  105 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISAD--------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT  105 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCS--------------------EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEECCCCCcceecccccc--------------------eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC
Confidence            35899999987665533322222                    445688888887765 579999999987666655443


Q ss_pred             cCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccCC----cCeeEEEEcCCCCEEEEEeC-
Q psy2110         183 MHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAHM----HPVCSISWSRNGYKIISAST-  256 (622)
Q Consensus       183 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~-  256 (622)
                      .            .|.-=.|-.+ +.|+..+ +..|+-|++.. ..+.+.+..|.    ..|.....+++.++++..+- 
T Consensus       106 e------------~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~  171 (494)
T 1bpo_A          106 D------------DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS  171 (494)
T ss_dssp             S------------CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEE
T ss_pred             C------------CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeec
Confidence            2            1233344333 3454443 56899999974 34556665443    46777788899998875432 


Q ss_pred             ------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeC--CCCeEEEEeeC---CCcEEEEEecCC--------ceeec--
Q psy2110         257 ------DNNVCIWDVLTGECEQKYRFPSPILKVQFHP--RNDHMFLVCPM---RHAAVLVDTDGD--------HQIVP--  315 (622)
Q Consensus       257 ------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~---~~~i~~~d~~~~--------~~~~~--  315 (622)
                            .|.+.+|..+.+.....-.|......+.+..  ....+++.+..   .+.+.+.++...        ++...  
T Consensus       172 ~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~  251 (494)
T 1bpo_A          172 AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF  251 (494)
T ss_dssp             EETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred             ccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence                  3678899887654322211222222222211  11123333322   367888888543        11111  


Q ss_pred             --ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         316 --IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       316 --~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                        -....+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|...+.+....-++.....|.|.--.++
T Consensus       252 fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          252 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             CCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             CCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence              11235556688889888899999999999999999999999888888888777776666667777788887777666

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.88  E-value=0.0019  Score=61.06  Aligned_cols=228  Identities=11%  Similarity=0.089  Sum_probs=117.3

Q ss_pred             CCCEEEEec-CC----CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----
Q psy2110          92 DGEYVCAGS-AR----QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND----  162 (622)
Q Consensus        92 ~~~~l~~~~-~~----~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----  162 (622)
                      ++..++.|+ .+    ...+.+||..+++-...-.......            .    .+++ ..++.+++.|+.+    
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~-~~~~~l~v~GG~~~~~~   76 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR------------Y----VASV-SLHDRIYVIGGYDGRSR   76 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB------------S----CEEE-EETTEEEEECCBCSSCB
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc------------c----ccEE-EECCEEEEEcCCCCCcc
Confidence            456666766 22    1368888987765332111111000            0    1222 2356777777754    


Q ss_pred             -CcEEEEecCCcc---cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceEEE--
Q psy2110         163 -GRIVLWDFLTRG---IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIAKI--  231 (622)
Q Consensus       163 -g~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~~~~~--  231 (622)
                       ..+.+||..++.   -...-.....  .       .....+.+  ++++++.|+.+     ..+.+||+.+.+....  
T Consensus        77 ~~~~~~~d~~~~~~~~W~~~~~~p~~--r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  145 (301)
T 2vpj_A           77 LSSVECLDYTADEDGVWYSVAPMNVR--R-------GLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD  145 (301)
T ss_dssp             CCCEEEEETTCCTTCCCEEECCCSSC--C-------BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCCCCCeeEECCCCCCC--c-------cceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence             468899988765   2222111110  0       11122222  56677777643     3688899887654322  


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----  299 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----  299 (622)
                      +......-..+.+  +++.++.|+.+     ..+.+||+.+.+....-..+.+.  .++...  +..+++.++.+     
T Consensus       146 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~  221 (301)
T 2vpj_A          146 MQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHL  221 (301)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBC
T ss_pred             CCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCccc
Confidence            2211111122222  66667776654     46899999888765543322221  122222  44577777654     


Q ss_pred             CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110         300 HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE  353 (622)
Q Consensus       300 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  353 (622)
                      ..+.+||+.+..-.  ..+........  +..-+++.++.|+.+     ..+.+||+.+.+
T Consensus       222 ~~v~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          222 SSVEAYNIRTDSWTTVTSMTTPRCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ceEEEEeCCCCcEEECCCCCCccccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            46888998765322  22222111112  222367777777655     357788877654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.86  E-value=0.02  Score=56.94  Aligned_cols=308  Identities=10%  Similarity=0.046  Sum_probs=163.6

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCccc---------------cccc-ccceEEEEEC---CCCCEEEEEe-C
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG---------------ALDC-ISLAVTCAFN---KRGTLLAVGC-N  214 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~v~~~~~s---~~g~~l~~~~-~  214 (622)
                      .+.+|+..|.|+|+-+.+++.+..+.........+               .+.. ...-..+++.   -||++|+... .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            46788899999999999887776654332221100               0000 0001123332   2678888876 4


Q ss_pred             CCeEEEEEcCCCceEEEec-cCCcCeeEEEEc--CCCCEEEEEeC-------CCcE------------EEEECCCCcEEE
Q psy2110         215 DGRIVLWDFLTRGIAKIIS-AHMHPVCSISWS--RNGYKIISAST-------DNNV------------CIWDVLTGECEQ  272 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~-------d~~i------------~iwd~~~~~~~~  272 (622)
                      +..|...++...++-+.+. .....+.+++|-  |+..+++.++.       ||..            ...|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            6778888888877665554 345678888886  67788888775       2221            011222222222


Q ss_pred             EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEe--------eCCCEEEEEecCC-e
Q psy2110         273 KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFD--------RRGQHVVTGNSKG-K  343 (622)
Q Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~dg-~  343 (622)
                      ++..+.....+...+++.+.+.++...        +....+..... ...=..+.|+        .+|++-..   +| .
T Consensus       232 Qv~v~gnld~~~~~~~g~~af~t~yNs--------E~~~~l~em~~-~e~D~~~vfn~~~ie~~vk~G~~~~~---~g~g  299 (638)
T 3sbq_A          232 QVIVDGNLDNTDADYTGRFAAATCYNS--------EKAFDLGGMMR-NERDWVVVFDIHAVEAAVKAGDFITL---GDSK  299 (638)
T ss_dssp             EEEESSCCCCEEECSSSSEEEEEESCT--------TCCSSHHHHTC-SSCEEEEEEEHHHHHHHHHTTCCBCC---TTCC
T ss_pred             EEEcCCChhhcCCCCCCCEEEEeeecc--------ccCcChhhcCc-ccccEEEEecHHHHHHHHhcCCeEEE---CCCC
Confidence            222223333344445555433333211        11111111111 1111122222        23443321   21 3


Q ss_pred             EEEEeCCC----ccEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCC--CCCcceeeeccccce
Q psy2110         344 VLVLSCPA----LELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDG--DPEPIQKLQDLVNKT  416 (622)
Q Consensus       344 i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~  416 (622)
                      +.+.|.+.    +..+..+-.-......+..+|||+++++++. +.++.++++......-..+  .++....-+ .....
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae-~e~Gl  378 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE-PELGL  378 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC-CBCCS
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee-ccCCC
Confidence            77888776    3322222223344558899999999998876 7889999998543321111  111111111 11222


Q ss_pred             eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC----------eeEEEEecCCCCceeEEEE------CCCCCEEEEEe
Q psy2110         417 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----------NLVKILHGTKGELLLDVVW------HPVRPIIASIS  478 (622)
Q Consensus       417 ~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~v~~------sp~~~~l~s~~  478 (622)
                      .-...+|.++| ...+.-.-|..|.-|++...          ..+..+.-|..  +-.+.-      .|+|++|++..
T Consensus       379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq--pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ--PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC--CcccccCCCccCCCCccEEEEec
Confidence            33456999999 45455444889999998653          45666766654  344433      68899999875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.81  E-value=0.028  Score=54.19  Aligned_cols=232  Identities=16%  Similarity=0.134  Sum_probs=124.7

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEEe----CCCCeEEEEEeCC---CCeEEEEeeC---C----Cc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGE-CEQKYR----FPSPILKVQFHPR---NDHMFLVCPM---R----HA  301 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~~~~~~~~---~----~~  301 (622)
                      .....++|.|+|+ |+.+..+|.|++++ .+++ .+..+.    .......++++|+   +..++++...   +    ..
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4567899999997 55556679999997 4554 222111    2356889999998   5656665442   3    56


Q ss_pred             EEEEEecCC-------ceeec-cc-CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc-------
Q psy2110         302 AVLVDTDGD-------HQIVP-ID-EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL-------  352 (622)
Q Consensus       302 i~~~d~~~~-------~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-------  352 (622)
                      |..++....       +.+.. +. ........++|.|+|.++++.+.             .|.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543       11111 21 11123456899999987776432             256666665421       


Q ss_pred             -c-EEEEEecCCCCEEEEEEcC-CCCEEEEEeCCC---cEEEEecccccccC---------CCCCCCcceeeecccccee
Q psy2110         353 -E-LKASFKASTTAIKSIEFAR-RGNCLLVNTGDR---LIRVYNHQEVLNAG---------KDGDPEPIQKLQDLVNKTM  417 (622)
Q Consensus       353 -~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~---~i~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  417 (622)
                       . .+. ..++ .....++|+| +++++++-....   .|.+....  ...+         ..+...++..+.  ..+..
T Consensus       187 ~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G--~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a  260 (354)
T 3a9g_A          187 PNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKG--GNYGWPLATGKAGRGEFVDPVIDTG--SETWA  260 (354)
T ss_dssp             TTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTT--CBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred             CCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCC--CcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence             0 111 1233 2345899999 666555443222   23332211  0000         000011222220  12233


Q ss_pred             eeeEEEc-------CCCCeEEEeeCCCCeEEEEECCCC-eeE--EEE-ecCCCCceeEEEECCCCCEEEEEe
Q psy2110         418 WKKCCFS-------GDGEYVCAGSARQHALYIWEKSVG-NLV--KIL-HGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       418 ~~~~~~s-------pdg~~l~~~~~~d~~i~iwd~~~~-~~~--~~~-~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ...++|.       .+|+++++... .+.|...++... +..  ..+ .+... .+.++++.|+|.+.++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~~~-rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLR-GSMLAAVNFGDNMEVRKISTFFKNVFG-RLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETT-TTEEEEEEECGGGCEEEEEEECTTTSC-CEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcC-CCEEEEEEECCCCcccceeeeccCCCC-CeeEEEECCCCcEEEEEe
Confidence            4567773       56766665544 778888888753 332  223 22223 389999999997666553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.79  E-value=0.002  Score=60.85  Aligned_cols=222  Identities=11%  Similarity=0.081  Sum_probs=113.1

Q ss_pred             CCCEEEEee-CC-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEE
Q psy2110         152 RGTLLAVGC-ND-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVL  220 (622)
Q Consensus       152 d~~~l~s~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~i  220 (622)
                      ++.+++.|+ .+     ..+.+||..+++-...-.....  .       .....+.  .++++++.|+.+     ..+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r-------~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~   82 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK--R-------RYVASVS--LHDRIYVIGGYDGRSRLSSVEC   82 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC--C-------BSCEEEE--ETTEEEEECCBCSSCBCCCEEE
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh--h-------ccccEEE--ECCEEEEEcCCCCCccCceEEE
Confidence            445666666 32     3688888877643222111110  0       0112222  246677777654     46889


Q ss_pred             EEcCCCc---eEEE--eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCC
Q psy2110         221 WDFLTRG---IAKI--ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPR  288 (622)
Q Consensus       221 wd~~~~~---~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~  288 (622)
                      ||+.+.+   ....  +.........+.+  +++.++.|+.+     ..+.+||+.+.+....-..+.+.  .+++..  
T Consensus        83 ~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  158 (301)
T 2vpj_A           83 LDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--  158 (301)
T ss_dssp             EETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--
T ss_pred             EECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--
Confidence            9988766   3322  2111112222222  56666666643     35899999888765544332221  122222  


Q ss_pred             CCeEEEEeeCC-----CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEE
Q psy2110         289 NDHMFLVCPMR-----HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKA  356 (622)
Q Consensus       289 ~~~~~~~~~~~-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  356 (622)
                      +..+++.|+.+     ..+..||+.+..-.  ..+........  +...+++.++.|+.+     ..+.+||+.+.+-..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAG--VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccce--EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            34577776654     45788888765322  22222111112  222366777777754     468999998765433


Q ss_pred             EEecC--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecc
Q psy2110         357 SFKAS--TTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQ  392 (622)
Q Consensus       357 ~~~~~--~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~  392 (622)
                      .-...  ......+.+  +++.++.++.+     ..+.+||+.
T Consensus       237 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          237 VTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             CCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCC
Confidence            22111  111122222  56666666544     346777766

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.76  E-value=0.034  Score=53.65  Aligned_cols=230  Identities=9%  Similarity=0.068  Sum_probs=118.2

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC-------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN-------  214 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~-------  214 (622)
                      +.|+|.|+|+.|+++...|.|++++.. +.....+... ...   ..........++++|+   +..|+++..       
T Consensus        21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-~~v---~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-PDV---WAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-CCC---CCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-ccc---ccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            599999999834455567999998743 3221111110 000   0001124578999996   555554432       


Q ss_pred             -CCeEEEEEcCCC--c--eEE-E---ec---cCCcCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc
Q psy2110         215 -DGRIVLWDFLTR--G--IAK-I---IS---AHMHPVCSISWSRNGYKIISASTD-------------NNVCIWDVLTGE  269 (622)
Q Consensus       215 -dg~i~iwd~~~~--~--~~~-~---~~---~~~~~v~~~~~s~~~~~l~s~~~d-------------~~i~iwd~~~~~  269 (622)
                       ...|..|++...  .  ... .   +.   ...+....|+|.|||.+.++.+..             |.|.-++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             235666666532  1  111 1   11   111234679999999655554331             356666654320


Q ss_pred             ------------EEEEEe-CCCCeEEEEEeCCCCeEEEEeeC-CCcEEEEEecCCce-----------------------
Q psy2110         270 ------------CEQKYR-FPSPILKVQFHPRNDHMFLVCPM-RHAAVLVDTDGDHQ-----------------------  312 (622)
Q Consensus       270 ------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~-----------------------  312 (622)
                                  ....+. .......++|+|....++++-.. ++.-.+.-+..+..                       
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                        111111 22346789999944445544322 21112211111100                       


Q ss_pred             --------eecccCCCCceEEEEEee-------CCCEEEEEecCCeEEEEeCCCccEEEEEe---cCCCCEEEEEEcCCC
Q psy2110         313 --------IVPIDEDSDLSIVASFDR-------RGQHVVTGNSKGKVLVLSCPALELKASFK---ASTTAIKSIEFARRG  374 (622)
Q Consensus       313 --------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~  374 (622)
                              +..+. +......+.|..       +|.++++....+.|...++..++......   .....+..+++.|||
T Consensus       256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  334 (353)
T 2g8s_A          256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG  334 (353)
T ss_dssp             SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred             CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence                    00011 112345566653       46677776677888888877654433221   234578999999999


Q ss_pred             CEEEEE
Q psy2110         375 NCLLVN  380 (622)
Q Consensus       375 ~~l~~~  380 (622)
                      .++++.
T Consensus       335 ~lyv~t  340 (353)
T 2g8s_A          335 YLYVLT  340 (353)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            855543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.75  E-value=0.0098  Score=56.20  Aligned_cols=226  Identities=12%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             CEEEEecCC-CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC----CcEEEE
Q psy2110          94 EYVCAGSAR-QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLW  168 (622)
Q Consensus        94 ~~l~~~~~~-~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw  168 (622)
                      ..++.|+.. ...+.+||..+++-...-.......            .    .+++. -++.+++.|+.+    ..+.+|
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~~~~~~~~~~   75 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR------------D----AACVF-WDNVVYILGGSQLFPIKRMDCY   75 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCB------------S----CEEEE-ETTEEEEECCBSSSBCCEEEEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccc------------e----eEEEE-ECCEEEEEeCCCCCCcceEEEE
Confidence            345555532 3578899988765432211000000            0    12222 366777777754    568888


Q ss_pred             ecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC------CeEEEEEcCCCceEEE--eccCCcCee
Q psy2110         169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------GRIVLWDFLTRGIAKI--ISAHMHPVC  240 (622)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~  240 (622)
                      |..+++-...-......         .....+.+  ++++++.|+.+      ..+.+||..+.+-...  +........
T Consensus        76 d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  144 (306)
T 3ii7_A           76 NVVKDSWYSKLGPPTPR---------DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHG  144 (306)
T ss_dssp             ETTTTEEEEEECCSSCC---------BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             eCCCCeEEECCCCCccc---------cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeE
Confidence            88876433221111100         01122222  56677777654      4588999887754332  111111112


Q ss_pred             EEEEcCCCCEEEEEeC---------CCcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----CcEEE
Q psy2110         241 SISWSRNGYKIISAST---------DNNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----HAAVL  304 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----~~i~~  304 (622)
                      .+.  -+++.++.|+.         -..+.+||+.+.+....-..+.+.  .++...  +..+++.|+.+     ..+.+
T Consensus       145 ~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~  220 (306)
T 3ii7_A          145 MVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEY  220 (306)
T ss_dssp             EEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEE
T ss_pred             EEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEE
Confidence            222  25666666653         345899999988655543322221  122222  34577776643     35788


Q ss_pred             EEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110         305 VDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE  353 (622)
Q Consensus       305 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  353 (622)
                      ||+.+..-  +..+.........+.  -+++.++.|+.+     ..+.+||+.+.+
T Consensus       221 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          221 YDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            88876532  222222222222222  267777888744     468889987755

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.74  E-value=0.0049  Score=58.17  Aligned_cols=228  Identities=13%  Similarity=0.116  Sum_probs=114.2

Q ss_pred             CCCEEEEecCCC---CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC-----C
Q psy2110          92 DGEYVCAGSARQ---HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND-----G  163 (622)
Q Consensus        92 ~~~~l~~~~~~~---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g  163 (622)
                      ++..++.|+.+.   ..+.+||..+.+-...-.......            .    .+++. -++.+++.|+.+     .
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~~~~~~   77 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC------------R----AGMVY-MAGLVFAVGGFNGSLRVR   77 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB------------S----CEEEE-ETTEEEEESCBCSSSBCC
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc------------c----ceEEE-ECCEEEEEeCcCCCcccc
Confidence            445666666432   357888887765332211111000            0    12222 267777777754     3


Q ss_pred             cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCceEEE--eccCC
Q psy2110         164 RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-----RIVLWDFLTRGIAKI--ISAHM  236 (622)
Q Consensus       164 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~  236 (622)
                      .+.+||..+.+-...-......         .....+.+  ++++++.|+.++     .+.+||+.+.+....  +....
T Consensus        78 ~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  146 (302)
T 2xn4_A           78 TVDSYDPVKDQWTSVANMRDRR---------STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR  146 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCC---------BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred             ceEEECCCCCceeeCCCCCccc---------cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc
Confidence            5888888776433221111100         01122222  567777776543     477888877654332  11111


Q ss_pred             cCeeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----CcE
Q psy2110         237 HPVCSISWSRNGYKIISASTD-------NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----HAA  302 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----~~i  302 (622)
                      .....+.+  +++.++.|+.+       ..+.+||+.+.+....-..+.+.  .+++..  +..+++.++.+     ..+
T Consensus       147 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  222 (302)
T 2xn4_A          147 SSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSV  222 (302)
T ss_dssp             BSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCE
T ss_pred             cCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceE
Confidence            11122222  56666666542       35899999888765543322221  122222  34577777654     368


Q ss_pred             EEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCcc
Q psy2110         303 VLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALE  353 (622)
Q Consensus       303 ~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  353 (622)
                      .+||+.+..-  +..+....... . +...+++.++.|+.++     .+.+||+.+.+
T Consensus       223 ~~yd~~~~~W~~~~~~~~~r~~~-~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          223 EVYDPTTNAWRQVADMNMCRRNA-G-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSC-E-EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEeCCCCCEeeCCCCCCccccC-e-EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            8899876532  22222111111 1 2223667777777553     47788877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.72  E-value=0.036  Score=53.42  Aligned_cols=245  Identities=11%  Similarity=0.109  Sum_probs=126.2

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--------CCCCeEEEEEeCC---CCeEEEEeeC-------
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------FPSPILKVQFHPR---NDHMFLVCPM-------  298 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~---~~~~~~~~~~-------  298 (622)
                      .....|+|.|+|++|+.+...|.|++++.. ++....+.        .......++++|+   +..++++...       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346789999999844455567999999853 33221111        2345689999996   5656665433       


Q ss_pred             CCcEEEEEecCC-------ceee-ccc---CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCcc-
Q psy2110         299 RHAAVLVDTDGD-------HQIV-PID---EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPALE-  353 (622)
Q Consensus       299 ~~~i~~~d~~~~-------~~~~-~~~---~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-  353 (622)
                      ...|..++....       +.+. .+.   ........++|.|+|.++++.+.             .|.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666666432       1111 111   11122356899999966555433             2467777764320 


Q ss_pred             -----------EEEEEe-cCCCCEEEEEEcC-CCCEEEEEeC-CCcEEEEecccccccC---------C-----------
Q psy2110         354 -----------LKASFK-ASTTAIKSIEFAR-RGNCLLVNTG-DRLIRVYNHQEVLNAG---------K-----------  399 (622)
Q Consensus       354 -----------~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~-d~~i~i~d~~~~~~~~---------~-----------  399 (622)
                                 ....+. ++ .....++|+| +|+++++-.. ++.=.|.-+.....-+         .           
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                       111111 22 3467899999 5654444322 2222232222111100         0           


Q ss_pred             --CCCCCcceeeeccccceeeeeEEEcC-------CCCeEEEeeCCCCeEEEEECCCCeeEEE--EecCCCCceeEEEEC
Q psy2110         400 --DGDPEPIQKLQDLVNKTMWKKCCFSG-------DGEYVCAGSARQHALYIWEKSVGNLVKI--LHGTKGELLLDVVWH  468 (622)
Q Consensus       400 --~~~~~~~~~~~~~~~~~~~~~~~~sp-------dg~~l~~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~v~~s  468 (622)
                        .+...++..+.   .+.....++|..       +|+++++... .+.|...++..++....  +-......+.++++.
T Consensus       256 ~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~  331 (353)
T 2g8s_A          256 IVAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALK-DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG  331 (353)
T ss_dssp             SCTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred             CCCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEcc-CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence              00001111111   122345567753       4666655544 77888888776654433  211112238999999


Q ss_pred             CCCCEEEEEeCCcEEEeec
Q psy2110         469 PVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       469 p~~~~l~s~~dg~v~iw~~  487 (622)
                      |+|.+.++..+..=+||.+
T Consensus       332 pdG~lyv~td~~~g~I~ri  350 (353)
T 2g8s_A          332 PDGYLYVLTDESSGELLKV  350 (353)
T ss_dssp             TTSCEEEEECSTTEEEEEE
T ss_pred             CCCcEEEEEeCCCCEEEEE
Confidence            9998666544223345544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.71  E-value=0.0051  Score=58.22  Aligned_cols=225  Identities=8%  Similarity=0.004  Sum_probs=113.6

Q ss_pred             CEEEEEeC--CCeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEEeCCC
Q psy2110         207 TLLAVGCN--DGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD----NNVCIWDVLTGECEQKYRFPS  278 (622)
Q Consensus       207 ~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~  278 (622)
                      .+++.|+.  ...+.+||..+.+-...  +.........+.  -++..++.|+.+    ..+.+||..+.+....-..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            35555654  35688999887654322  111111112222  256667777654    568999999887655443322


Q ss_pred             Ce--EEEEEeCCCCeEEEEeeCC------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec--------
Q psy2110         279 PI--LKVQFHPRNDHMFLVCPMR------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS--------  340 (622)
Q Consensus       279 ~v--~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------  340 (622)
                      +.  .+++..  +..+++.|+.+      ..+.+||..+..-  +..+....... ++ ...+++.++.|+.        
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GM-VEANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEECCEESCTTTCE
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EE-EEECCEEEEECCCCCCCCccc
Confidence            21  122222  44577777654      4588888876532  22222211111 12 2236677777653        


Q ss_pred             -CCeEEEEeCCCccEEEEEecCCCC-EEEEEEcCCCCEEEEEeCC-----CcEEEEecccccccCCCCCCCcceeeeccc
Q psy2110         341 -KGKVLVLSCPALELKASFKASTTA-IKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLNAGKDGDPEPIQKLQDLV  413 (622)
Q Consensus       341 -dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  413 (622)
                       -..+.+||+.+.+-...-...... -.+++.. +++.++.|+.+     ..+.+||+...       ....+..+... 
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~-------~W~~~~~~p~~-  237 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN-------EWKMVSPMPWK-  237 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT-------EEEECCCCSCC-
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC-------cEEECCCCCCC-
Confidence             345889998876533321111111 1122222 56666666543     45888888731       11111111111 


Q ss_pred             cceeeeeEEEcCCCCeEEEeeCC----CCeEEEEECCCCe
Q psy2110         414 NKTMWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGN  449 (622)
Q Consensus       414 ~~~~~~~~~~spdg~~l~~~~~~----d~~i~iwd~~~~~  449 (622)
                       ......+.+  +++.++.|+.+    -..+.+||..+.+
T Consensus       238 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          238 -GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             -BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             -ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence             111112222  66777777642    2468889988765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.67  E-value=0.042  Score=52.24  Aligned_cols=230  Identities=10%  Similarity=0.039  Sum_probs=118.4

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEE---eCCCeE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVG---CNDGRI  218 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~---~~dg~i  218 (622)
                      +.|+|.|||.++++--..|.|++++...+.........  ..   ..........++++|+   +..|++.   ..++.|
T Consensus        35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~--~v---~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP--GV---SPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--TC---CCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--ce---eecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            69999999997777655899999986555432111000  00   0011134688999995   4445443   234566


Q ss_pred             EEEEcCCC----------ce-EEEec-cCCcCeeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-----
Q psy2110         219 VLWDFLTR----------GI-AKIIS-AHMHPVCSISWSRNGYKIISAST-------------DNNVCIWDVLTG-----  268 (622)
Q Consensus       219 ~iwd~~~~----------~~-~~~~~-~~~~~v~~~~~s~~~~~l~s~~~-------------d~~i~iwd~~~~-----  268 (622)
                      .-|.+..+          +. +..+. ...+.-..|.|.|||.+.++.+.             .|.|.-.+....     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            66666541          11 11222 12234567999999987776542             244544454321     


Q ss_pred             ----cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------------------eecccCCCCceEEE
Q psy2110         269 ----ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------------------IVPIDEDSDLSIVA  326 (622)
Q Consensus       269 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~~~~~~  326 (622)
                          ..+....+ .....++|+|++..++.-.+.++.-.+.-+..+..                  +..+..+......+
T Consensus       190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~  268 (347)
T 3das_A          190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI  268 (347)
T ss_dssp             SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred             CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence                11222212 23567899997663333223333222322222111                  11111111233455


Q ss_pred             EEeeCCCEEEEEecCCeEEEEeCCCccE----EEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         327 SFDRRGQHVVTGNSKGKVLVLSCPALEL----KASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       327 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +|. +|..++..-..+.|....+.....    ...+......+..++..|||.++++..
T Consensus       269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            554 355555555555666666544321    222334456789999999997665543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.62  E-value=0.0062  Score=57.46  Aligned_cols=221  Identities=12%  Similarity=0.099  Sum_probs=111.5

Q ss_pred             CCEEEEeeCC----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEc
Q psy2110         153 GTLLAVGCND----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDF  223 (622)
Q Consensus       153 ~~~l~s~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~  223 (622)
                      +.+++.|+.+    ..+.+||..+.+-... . ..+...       .....+.+  ++++++.|+.+     ..+.+||.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~-~~p~~r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~   84 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQV-A-ELPSRR-------CRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDP   84 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEE-C-CCSSCC-------BSCEEEEE--TTEEEEESCBCSSSBCCCEEEEET
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEc-c-cCCccc-------ccceEEEE--CCEEEEEeCcCCCccccceEEECC
Confidence            4456666643    3578888877643222 1 111100       01112222  56677777644     35888998


Q ss_pred             CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEE
Q psy2110         224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFL  294 (622)
Q Consensus       224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~  294 (622)
                      .+.+....  +.........+.+  +++.++.|+.++     .+.+||+.+.+....-..+.+.  .+++..  +..+++
T Consensus        85 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv  160 (302)
T 2xn4_A           85 VKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYA  160 (302)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEE
Confidence            87654322  1111111122222  566777777553     5888999887765543322221  122222  345666


Q ss_pred             EeeC-------CCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEEEEec
Q psy2110         295 VCPM-------RHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKASFKA  360 (622)
Q Consensus       295 ~~~~-------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~  360 (622)
                      .++.       -..+..||+.+..-  +..+.........  ..-++++++.|+.+     ..+.+||+.+.+-...-..
T Consensus       161 ~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  238 (302)
T 2xn4_A          161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV--GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM  238 (302)
T ss_dssp             ECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE--EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC
Confidence            6654       23578888876532  2222222111222  22367777777654     3689999987654332111


Q ss_pred             --CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecc
Q psy2110         361 --STTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQ  392 (622)
Q Consensus       361 --~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~  392 (622)
                        .......+.  -+++.++.++.+     ..+.+||+.
T Consensus       239 ~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          239 NMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             SSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCC
Confidence              111111222  256666666644     347888876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.55  E-value=0.0085  Score=56.72  Aligned_cols=233  Identities=12%  Similarity=0.043  Sum_probs=117.3

Q ss_pred             EEEcCCCCEEEEecCC---CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC--
Q psy2110          87 CCFSGDGEYVCAGSAR---QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN--  161 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~---~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--  161 (622)
                      .+..-++..++.|+..   -..+.+||..+++-...-.......            .    .+++. .++.+++.|+.  
T Consensus        19 ~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------------~----~~~~~-~~~~lyv~GG~~~   81 (308)
T 1zgk_A           19 HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS------------G----LAGCV-VGGLLYAVGGRNN   81 (308)
T ss_dssp             --CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB------------S----CEEEE-ETTEEEEECCEEE
T ss_pred             cccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc------------c----ceEEE-ECCEEEEECCCcC
Confidence            3444567777777732   1468888987765433211011000            0    12222 25667777765  


Q ss_pred             --C-----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCceE
Q psy2110         162 --D-----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-----GRIVLWDFLTRGIA  229 (622)
Q Consensus       162 --d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~i~iwd~~~~~~~  229 (622)
                        +     ..+.+||..+.+-...-......         .....+.+  ++++++.|+.+     ..+.+||..+.+..
T Consensus        82 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  150 (308)
T 1zgk_A           82 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPR---------NRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH  150 (308)
T ss_dssp             ETTEEEECCCEEEEETTTTEEEECCCCSSCC---------BTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred             CCCCCeecceEEEECCCCCeEeECCCCCcCc---------cccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence              2     46888888776433221111100         11122223  56677776543     45888998776543


Q ss_pred             EE--eccCCcCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCC-
Q psy2110         230 KI--ISAHMHPVCSISWSRNGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMR-  299 (622)
Q Consensus       230 ~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-  299 (622)
                      ..  +......-..+.+  +++.++.|+.+     ..+.+||+.+.+....-..+.+  -.+++..  +..+++.++.+ 
T Consensus       151 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  226 (308)
T 1zgk_A          151 LVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDG  226 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             ECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCC
Confidence            22  1111111122222  56666666654     4689999988765543322221  1122222  44577777654 


Q ss_pred             ----CcEEEEEecCCceee--cccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCcc
Q psy2110         300 ----HAAVLVDTDGDHQIV--PIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALE  353 (622)
Q Consensus       300 ----~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  353 (622)
                          ..+.+||+.+..-..  .+....... .++ .-++++++.|+.+     ..+.+||+.+.+
T Consensus       227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          227 QDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCccceEEEEeCCCCcEEECCCCCCCccce-EEE-EECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence                468889987653222  222111111 222 2366777777643     357778877654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.55  E-value=0.011  Score=56.53  Aligned_cols=223  Identities=10%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             EEEEcCCCCEEEEee------------CCCcEEEEecCCcc-cccccccccCCCcccccccccceEEEEECC--CCC-EE
Q psy2110         146 TCAFNKRGTLLAVGC------------NDGRIVLWDFLTRG-IAKIISAHMHPEFDGALDCISLAVTCAFNK--RGT-LL  209 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~------------~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~-~l  209 (622)
                      .++..|+|..+++++            .+|.|.++|..+.. ....+...........    .....+.+.+  +|+ +|
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~----f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS----FNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGG----CCEEEEEEEECTTCCEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCc----eeeeeeEEEECCCCcEEE
Confidence            667778775554442            68999999987421 1222221110000011    1234555544  454 34


Q ss_pred             EEE-eC--CCeEEEEEcCCCc-e---EEEeccC-CcCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEE
Q psy2110         210 AVG-CN--DGRIVLWDFLTRG-I---AKIISAH-MHPVCSISWSRNGYKIISAST-----------------DNNVCIWD  264 (622)
Q Consensus       210 ~~~-~~--dg~i~iwd~~~~~-~---~~~~~~~-~~~v~~~~~s~~~~~l~s~~~-----------------d~~i~iwd  264 (622)
                      +++ ..  +..|.+|++.... .   +..+.+. -...+.+.+.++|++.++...                 .|.|..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            443 33  5678888876532 2   2333322 245789999999987666531                 23455555


Q ss_pred             CCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce---eecccCCCCceEEEEEee-CCCEEEEEec
Q psy2110         265 VLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ---IVPIDEDSDLSIVASFDR-RGQHVVTGNS  340 (622)
Q Consensus       265 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~~~~~  340 (622)
                      .  ++.......-...+.++|+|+++.++++-+..+.|..|++.....   ...+ ........+++++ +|.+.+++..
T Consensus       210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            4  444333333456789999999999999888899999999864321   1222 2245566788999 5988776654


Q ss_pred             C-CeEEEEeCC--CccEEEEEec---CCCCEEEEEEcCCCCE
Q psy2110         341 K-GKVLVLSCP--ALELKASFKA---STTAIKSIEFARRGNC  376 (622)
Q Consensus       341 d-g~i~i~d~~--~~~~~~~~~~---~~~~i~~~~~s~~~~~  376 (622)
                      + +.|..|+..  .+..+..++.   ....+..+ |..+|+.
T Consensus       287 ~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~  327 (355)
T 3sre_A          287 NGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTV  327 (355)
T ss_dssp             CHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred             CceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence            4 345555543  2444444442   22334443 4445553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.48  E-value=0.025  Score=53.63  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=93.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEE-EeccCCcCeeEEEEcCCCCEEEEEeC-----C------CcEEEEECCCCcEEEEEe
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAK-IISAHMHPVCSISWSRNGYKIISAST-----D------NNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~~~~  275 (622)
                      +++.|+  ..+.+||..+++-.. .+..............++..++.|+.     .      ..+.+||..+.+....-.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  578999998877432 22212122333334457778888873     1      127889998877644333


Q ss_pred             CCCCeE--EEEEeCCCCeEEEEeeCC--------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec-C-
Q psy2110         276 FPSPIL--KVQFHPRNDHMFLVCPMR--------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS-K-  341 (622)
Q Consensus       276 ~~~~v~--~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-  341 (622)
                      .+.+-.  +++..  +..+++.|+.+        ..+.+||..+..-  +..+......  ..+...+++.++.|+. + 
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG--HTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCTT
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc--eeEEEECCEEEEEeCCCCC
Confidence            322221  12222  44577776632        3578888876532  2222221111  1222356677777775 2 


Q ss_pred             ----CeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecc
Q psy2110         342 ----GKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVNTGDR-----LIRVYNHQ  392 (622)
Q Consensus       342 ----g~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~-----~i~i~d~~  392 (622)
                          ..+.+||+.+.+-...-.  ........+.+  +++.++.|+.++     .+.+||+.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence                468999988765332211  11111122222  567777776543     47788876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.44  E-value=0.19  Score=54.18  Aligned_cols=432  Identities=10%  Similarity=0.036  Sum_probs=224.4

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEeccccceecc-------------cCceEEeecCCceEEEeechhhhhcCCCCC
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-------------RGNCLLVNTGDRLIRVYNHQEVLNAGKDGD   68 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~~~-------------~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~   68 (622)
                      ..|.++....+|.+.+ |+.+| +..+|..+.++...             .+..|-+++.+ -+..++.....       
T Consensus        63 ~~i~~i~~d~~g~lWi-gT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~-------  132 (758)
T 3ott_A           63 TRIYCGVIIDNTYLYM-GTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK-------  132 (758)
T ss_dssp             SCEEEEEEETTTEEEE-EETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC-------
T ss_pred             ceEEEEEEcCCCcEEE-EeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe-------
Confidence            3578888888875444 44555 67888765443211             11223333333 24445443210       


Q ss_pred             CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      ...............+.++....+|...+. +.  +-|..++..+++... +......           ......|.++.
T Consensus       133 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~--~Gl~~~~~~~~~~~~-~~~~~~~-----------~~~~~~i~~i~  197 (758)
T 3ott_A          133 LTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TY--NGLCRYIPSNGKFEG-IPLPVHS-----------SQSNLFVNSLL  197 (758)
T ss_dssp             EEEECHHHHCCSCSCEEEEEECTTCCEEEE-ET--TEEEEEETTTTEEEE-ECCCCCT-----------TCSSCCEEEEE
T ss_pred             EEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eC--CCHhhCccCCCceEE-ecCCCcc-----------ccccceeEEEE
Confidence            000100011112334667777777776654 32  357788877665432 2111100           00011235777


Q ss_pred             EcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Q psy2110         149 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  228 (622)
Q Consensus       149 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~  228 (622)
                      ..+++..|..|+. +-+..++..+++... +...          ....|.++....+|.+.+ |+. +-+.+++..++..
T Consensus       198 ~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l----------~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~  263 (758)
T 3ott_A          198 EDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF----------HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL  263 (758)
T ss_dssp             EETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE----------EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC
T ss_pred             EECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC----------CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE
Confidence            7777665555554 457788876654321 1100          012477888888887654 444 4578888766554


Q ss_pred             EEEec-------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--------CCCCeEEEEEeCCCCeEE
Q psy2110         229 AKIIS-------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------FPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       229 ~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~  293 (622)
                      .....       -....|.++....+|. |..|+..| +.++... .. ...+.        ....|.++.-..++.  +
T Consensus       264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~--l  337 (758)
T 3ott_A          264 QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGF--Y  337 (758)
T ss_dssp             EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC--E
T ss_pred             EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCC--E
Confidence            32211       1224588888887776 44555556 5554332 21 11221        123577777777665  3


Q ss_pred             EEeeCCCcEEEEEecCCc--eeeccc-------CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-c---
Q psy2110         294 LVCPMRHAAVLVDTDGDH--QIVPID-------EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-A---  360 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---  360 (622)
                      -.++.+ .+..++..+..  ....+.       .....|.++.-+.+|++.+ |+. +-+..|+..+++...-.. .   
T Consensus       338 WiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~  414 (758)
T 3ott_A          338 WFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTG  414 (758)
T ss_dssp             EEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC-
T ss_pred             EEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcC
Confidence            333444 45556544321  111111       1224577777777776555 454 469999988775433211 1   


Q ss_pred             --CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcc---eeee--ccccceeeeeEEEcCCCCeEEEe
Q psy2110         361 --STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI---QKLQ--DLVNKTMWKKCCFSGDGEYVCAG  433 (622)
Q Consensus       361 --~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~spdg~~l~~~  433 (622)
                        ....|.++...++|+ |.+|+..+-|.+++.......    .....   ..+.  .......+.++...++|+.-+.+
T Consensus       415 ~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~  489 (758)
T 3ott_A          415 TYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQS----TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLL  489 (758)
T ss_dssp             -CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHC----CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCCCceEEEEEEcCCCC-EEEEECCCceEEEcccccccc----CCcceecccccccccccccceeeeEEEcCCCCEEEEc
Confidence              234588888877776 556776667888886521100    00001   0111  11122346677888888866533


Q ss_pred             eCCCCeEEEEECCCCeeEEEEecC--CCCceeEEEECCCCCEEEEEeCCcEEEeecC
Q psy2110         434 SARQHALYIWEKSVGNLVKILHGT--KGELLLDVVWHPVRPIIASISSGVVSLWAQN  488 (622)
Q Consensus       434 ~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~~  488 (622)
                      +..+| |..+|..+++........  ....+.++....+|.+.++...| +..++..
T Consensus       490 ~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~  544 (758)
T 3ott_A          490 YNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPK  544 (758)
T ss_dssp             TTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC-
T ss_pred             cCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecC
Confidence            33244 888998877654332111  11237788888888766544344 7777764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.42  E-value=0.1  Score=50.39  Aligned_cols=264  Identities=8%  Similarity=0.053  Sum_probs=162.7

Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      ..+|.|.|+.++.......-   .--+.-.+|..+.|+.-. ..++.|+|+++.+.++.+....+|.-=.|-.+.. +.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~-l~l  121 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VAL  121 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTE-EEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCe-EEE
Confidence            34799999988654422111   112445678777666654 6799999999999999999888888777876553 333


Q ss_pred             EeeCCCcEEEEEecCC-ceeecccCC----CCceEEEEEeeCCCEEEEEe-------cCCeEEEEeCCCccEEEEEecCC
Q psy2110         295 VCPMRHAAVLVDTDGD-HQIVPIDED----SDLSIVASFDRRGQHVVTGN-------SKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      +  .+..++-|++... .+...+..|    ...|.....+++.++++..+       -.|.+.+|..+. +.-+.+.+|.
T Consensus       122 V--T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha  198 (494)
T 1bpo_A          122 V--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA  198 (494)
T ss_dssp             E--CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred             E--cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence            3  3667999999643 333333322    45566777788888876533       236788998764 4455677775


Q ss_pred             CCEEEEEEcCCC---CEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeC
Q psy2110         363 TAIKSIEFARRG---NCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       363 ~~i~~~~~s~~~---~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      .....+.+.-+.   ..++.+..   .+.++|.++.........-..+.+..+... .....-.++..|+.-..+..-+.
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK  278 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence            544444333221   24444444   378999988632100000000111111111 11122346788888888887776


Q ss_pred             CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                       -|.|++||+.+|.++..-+-..+. |..-+-+....-++... .|.|.--.++
T Consensus       279 -~G~i~lyDleTgt~i~~nrIs~~~-iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          279 -YGYIHLYDLETGTCIYMNRISGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCSSC-EEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             -CceEEEEecccceeeeeecccCCc-eEEecccCCCCcEEEEccCceEEEEEEc
Confidence             899999999999998877755544 66555555555555555 7877766665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.38  E-value=0.014  Score=55.37  Aligned_cols=183  Identities=11%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-----C------CeEEEEEc
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-----D------GRIVLWDF  223 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----d------g~i~iwd~  223 (622)
                      +++.|+  ..+.+||..+++-.. .....+..         .....+...++++++.|+.     .      ..+.+||.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~   74 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP---------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH   74 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSC---------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCC---------ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence            344555  578899988875432 11110000         1122233457788888773     1      12778888


Q ss_pred             CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCe
Q psy2110         224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD--------NNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDH  291 (622)
Q Consensus       224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~  291 (622)
                      .+.+-...  +.........+.+  +++.++.|+.+        ..+.+||..+.+....-..+.+.  .+++. - +..
T Consensus        75 ~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~  150 (315)
T 4asc_A           75 LDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-H-MDL  150 (315)
T ss_dssp             TTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTE
T ss_pred             CCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-E-CCE
Confidence            77654321  1111111112222  56666666632        45899999887654433322221  12222 2 345


Q ss_pred             EEEEeeC-C-----CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCccEE
Q psy2110         292 MFLVCPM-R-----HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALELK  355 (622)
Q Consensus       292 ~~~~~~~-~-----~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~  355 (622)
                      +++.|+. +     ..+.+||..+..-  +..+........  +..-+++.++.|+.++     .+.+||+.+.+-.
T Consensus       151 iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG--ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE--EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE--EEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            7777765 2     3688888876532  222222111112  2233677777777654     5888998876533

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.35  E-value=0.015  Score=55.08  Aligned_cols=230  Identities=8%  Similarity=0.024  Sum_probs=114.5

Q ss_pred             ECCCCCEEEEEeC----CCeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeC----C-----CcEEEEECC
Q psy2110         202 FNKRGTLLAVGCN----DGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISAST----D-----NNVCIWDVL  266 (622)
Q Consensus       202 ~s~~g~~l~~~~~----dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~----d-----~~i~iwd~~  266 (622)
                      ..-++.+++.|+.    -..+.+||..+.+....  +....... +++. .++..++.|+.    +     ..+.+||+.
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            3445667777763    24688899877654322  11111111 2222 25666666664    2     468999998


Q ss_pred             CCcEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEE
Q psy2110         267 TGECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       267 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~  337 (622)
                      +.+....-..+.+  -.+++..  +..+++.|+.+     ..+.+||..+..-.  ..+.........+.  -+++.++.
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~  174 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAV  174 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred             CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEE
Confidence            8765543332211  1122222  34566666543     35778888765322  12222111122222  26777777


Q ss_pred             EecC-----CeEEEEeCCCccEEEE--EecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecccccccCCCCCCCc
Q psy2110         338 GNSK-----GKVLVLSCPALELKAS--FKASTTAIKSIEFARRGNCLLVNTGD-----RLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       338 ~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                      |+.+     ..+.+||+.+.+-...  +.........+.+  +++.++.++.+     ..+.+||+...       ....
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-------~W~~  245 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-------TWTF  245 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-------EEEE
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-------cEEE
Confidence            7654     4588999877653322  1111111222222  56666776553     46888988731       1111


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCC----CCeEEEEECCCCee
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR----QHALYIWEKSVGNL  450 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----d~~i~iwd~~~~~~  450 (622)
                      +..+.   ......+++. -+++.++.|+.+    -..+.+||..+.+-
T Consensus       246 ~~~~p---~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          246 VAPMK---HRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             CCCCS---SCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCCCC---CCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            11111   1111112222 266777777642    23588888877653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.30  E-value=0.17  Score=50.47  Aligned_cols=103  Identities=9%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEEeCC---CCeEEEEeeC------
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---------PSPILKVQFHPR---NDHMFLVCPM------  298 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~~~~~~~~------  298 (622)
                      ...+.|+|.|+|+.+++-...+.|++++..+++.......         ......++|+|+   +..++++.+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            4567999999998666654434788888666654333221         245679999996   6666665542      


Q ss_pred             ------CCcEEEEEecCC-------ceeec-cc-CCCCceEEEEEeeCCCEEEEEe
Q psy2110         299 ------RHAAVLVDTDGD-------HQIVP-ID-EDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       299 ------~~~i~~~d~~~~-------~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                            ...|.-++....       +.+.. +. ........++|.|+|.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  234555555321       11211 21 1234567899999998777644

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.29  E-value=0.03  Score=53.90  Aligned_cols=112  Identities=16%  Similarity=0.223  Sum_probs=75.8

Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc------------EEEEEec------CCCCEEEEEEcCC---CCEEEEE
Q psy2110         322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALE------------LKASFKA------STTAIKSIEFARR---GNCLLVN  380 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~------~~~~i~~~~~s~~---~~~l~~~  380 (622)
                      .+..+..+|+|.+|+..+.. .|.|..+..+.            ..+.+..      ...+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            46678999999999997655 68888887321            1233442      2577999999995   4689999


Q ss_pred             eCCCcEEEEecccccccCCCCCCCcceeeeccc-------cceeeeeEEEcCCCCeEEEee--CCCCeEEEE
Q psy2110         381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-------NKTMWKKCCFSGDGEYVCAGS--ARQHALYIW  443 (622)
Q Consensus       381 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~--~~d~~i~iw  443 (622)
                      ..|+.|++||+....       ..+. .+....       ....+.++||+++|-.|...+  . +|.||-.
T Consensus       146 tsD~~Ir~yDl~~s~-------~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~-~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQ-------EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE-GGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTT-------SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT-SCEEEEE
T ss_pred             ecCCEEEEEEcccCC-------CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC-CCCEEEE
Confidence            999999999998511       1111 121111       114567889999887776644  4 6777643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.24  E-value=0.15  Score=48.48  Aligned_cols=237  Identities=13%  Similarity=0.092  Sum_probs=123.2

Q ss_pred             CCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEEEeCC---CCeEEEEee--CCCcE
Q psy2110         235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQFHPR---NDHMFLVCP--MRHAA  302 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~---~~~~~~~~~--~~~~i  302 (622)
                      .-...+.|+|.|||..+++-...|.|++++..+++......       .......++++|+   +..++++-+  .++.|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34566899999999876666558999999876665432221       2456789999996   444544322  34455


Q ss_pred             EEEEecCC----------ceee-ccc-CCCCceEEEEEeeCCCEEEEEec-------------CCeEEEEeCCCc-----
Q psy2110         303 VLVDTDGD----------HQIV-PID-EDSDLSIVASFDRRGQHVVTGNS-------------KGKVLVLSCPAL-----  352 (622)
Q Consensus       303 ~~~d~~~~----------~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-----  352 (622)
                      .-+.....          +.+. .+. ........+.|.|+|.++++.+.             .|.|.-++....     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            55655431          1111 111 11223456899999987777432             355655565422     


Q ss_pred             ---c-EEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccC------C---CCCCCcceeeeccccceee
Q psy2110         353 ---E-LKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAG------K---DGDPEPIQKLQDLVNKTMW  418 (622)
Q Consensus       353 ---~-~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~  418 (622)
                         . .+. -.+|. ....++|+|+|.++++- +.++.=.|.-+.....-+      .   .+...++..+..  .....
T Consensus       190 Pf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~~ap  265 (347)
T 3das_A          190 PFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DEASP  265 (347)
T ss_dssp             SSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TTCCE
T ss_pred             CCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CCCCC
Confidence               1 111 12343 34589999988765554 223322333222211110      0   000111211111  11123


Q ss_pred             eeEEEcCCCCeEEEeeCCCCeEEEEECCCCe----eEEEEecCCCCceeEEEECCCCCEEEEEe
Q psy2110         419 KKCCFSGDGEYVCAGSARQHALYIWEKSVGN----LVKILHGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       419 ~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ..++|. +|..++..-. .+.|....+..+.    ....+.+..+. +.+|+..|||.++++..
T Consensus       266 ~G~~~~-~g~~~~~~l~-~~~l~~v~~~~~~~~~~~e~~l~~~~gR-~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          266 SGIAYA-EGSVWMAGLR-GERLWRIPLKGTAAAADPQAFLEGEYGR-LRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEEE-TTEEEEEEST-TCSEEEEEEETTEESSCCEEESTTTSSC-EEEEEEEETTEEEEEEC
T ss_pred             cceEEE-cCceeecccc-CCEEEEEEecCCceecceEEeecCCCCC-ccEEEECCCCcEEEEEc
Confidence            455665 3444444333 4556555554432    22334443444 88888888887666654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.23  E-value=0.33  Score=52.39  Aligned_cols=355  Identities=7%  Similarity=0.014  Sum_probs=186.6

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      .+.++....+|. |-.++.  .-+..||..+.+.........                 ..|.++.. .++ .|..++.+
T Consensus        64 ~i~~i~~d~~g~-lWigT~--~Gl~~yd~~~~~f~~~~~~~~-----------------~~i~~i~~-~~g-~lWigt~~  121 (758)
T 3ott_A           64 RIYCGVIIDNTY-LYMGTD--NGILVYNYRADRYEQPETDFP-----------------TDVRTMAL-QGD-TLWLGALN  121 (758)
T ss_dssp             CEEEEEEETTTE-EEEEET--TEEEEEETTTTEECCCSCCCC-----------------SCEEEEEE-ETT-EEEEEETT
T ss_pred             eEEEEEEcCCCc-EEEEeC--CCeEEEeCCCCEEECcccCCC-----------------ceEEEEEe-cCC-cEEEEcCC
Confidence            456666666664 444553  357899987754321000001                 11245543 345 45555555


Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe-cc----CCc
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII-SA----HMH  237 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~-~~----~~~  237 (622)
                       -|..++..+++... +......      .....|.++....+|.+.+ |+.. -+..++..+++..... ..    ...
T Consensus       122 -Gl~~~~~~~~~~~~-~~~~~~~------l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  191 (758)
T 3ott_A          122 -GLYTYQLQSRKLTS-FDTRRNG------LPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL  191 (758)
T ss_dssp             -EEEEEETTTCCEEE-ECHHHHC------CSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred             -cceeEeCCCCeEEE-eccCCCC------cCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence             57888876654322 2100000      0013477888888887665 4444 5778887666543211 11    123


Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .|.++...+++..|..|.. +-+..+|..+++...... ....|.++....++.  +..++. +.+.+++..+.......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~-~Gl~~~~~~~~~~~~~~  267 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--LLAGTD-NGLYVYHNDTTPLQHII  267 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--EEEEET-TEEEEECCTTSCCEEEC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--EEEEeC-CceeEEecCCCcEEEEE
Confidence            4788888777765555553 458889988765433221 233477777776665  333443 45777777654321111


Q ss_pred             -------cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe-----cCCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         317 -------DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK-----ASTTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       317 -------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                             ......|.++..+.+|.+.+ |+..| +.++.....-......     .....|.++.-..+|.+. +|+.+|
T Consensus       268 ~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G  344 (758)
T 3ott_A          268 HDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG  344 (758)
T ss_dssp             CCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE
T ss_pred             cCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc
Confidence                   11234577888777776544 55566 5544332211111111     123568889888888744 455554


Q ss_pred             cEEEEecccccccCCCCCCCcceeee-----ccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe-cC-
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQ-----DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH-GT-  457 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~-  457 (622)
                       +..++....       ....+..+.     .......+.++.-..+|++-+ |+. + -|..|+..+++...... .. 
T Consensus       345 -l~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~-GL~~~~~~~~~~~~~~~~~~~  413 (758)
T 3ott_A          345 -LIRFTDPAG-------ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-G-SINRYDYATRQFIHYNIVDNT  413 (758)
T ss_dssp             -EEEESCTTS-------SCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-T-EEEEEETTTTEEEEEEEECCC
T ss_pred             -ceeeccccc-------ccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-C-cHhhcCcCCCcEEEeecCCCc
Confidence             555654420       001111111     011223456677777777544 443 4 59999998876543221 11 


Q ss_pred             ---CCCceeEEEECCCCCEEEEEeCCcEEEeec
Q psy2110         458 ---KGELLLDVVWHPVRPIIASISSGVVSLWAQ  487 (622)
Q Consensus       458 ---~~~~v~~v~~sp~~~~l~s~~dg~v~iw~~  487 (622)
                         ....|.++.-.+++.+.+....+-+.+++.
T Consensus       414 ~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~  446 (758)
T 3ott_A          414 GTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK  446 (758)
T ss_dssp             --CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred             CCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence               112378888877776555443445666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.21  E-value=0.22  Score=49.74  Aligned_cols=109  Identities=6%  Similarity=0.026  Sum_probs=59.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC---CCEEEEEeC-------
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCN-------  214 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~-------  214 (622)
                      +.|+|.|+|+++++-...+.|++++..++..........  ... ..........++|+|+   +..|+++..       
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~--~~~-~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPE--IVN-DADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT--CCC-CTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCc--ccc-ccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            699999999877765443468888765543321111100  000 0001134678999996   555555442       


Q ss_pred             ------CCeEEEEEcCCC--c-----eE-EEec-cCCcCeeEEEEcCCCCEEEEEeC
Q psy2110         215 ------DGRIVLWDFLTR--G-----IA-KIIS-AHMHPVCSISWSRNGYKIISAST  256 (622)
Q Consensus       215 ------dg~i~iwd~~~~--~-----~~-~~~~-~~~~~v~~~~~s~~~~~l~s~~~  256 (622)
                            ...|.-|++...  .     .+ ..+. ...+....|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  234666665432  1     11 1122 12245789999999987776553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.20  E-value=0.087  Score=49.90  Aligned_cols=224  Identities=10%  Similarity=0.102  Sum_probs=108.3

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC----CC-----
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN----DG-----  163 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----dg-----  163 (622)
                      ..++.|+   ..+.+||..+++-... +.......                 .......++.+++.|+.    ++     
T Consensus        17 ~i~~~GG---~~~~~yd~~~~~W~~~~~~~~~~r~-----------------~~~~~~~~~~lyv~GG~~~~~~~~~~~~   76 (318)
T 2woz_A           17 LILLVND---TAAVAYDPMENECYLTALAEQIPRN-----------------HSSIVTQQNQVYVVGGLYVDEENKDQPL   76 (318)
T ss_dssp             EEEEECS---SEEEEEETTTTEEEEEEECTTSCSS-----------------EEEEECSSSCEEEEESSCC-------CC
T ss_pred             hhhhccc---cceEEECCCCCceecccCCccCCcc-----------------ceEEEEECCEEEEECCcccCccccCCCc
Confidence            3445555   3588999988775431 11111111                 12233456777788773    11     


Q ss_pred             --cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC-------CeEEEEEcCCCceEEE--e
Q psy2110         164 --RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND-------GRIVLWDFLTRGIAKI--I  232 (622)
Q Consensus       164 --~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------g~i~iwd~~~~~~~~~--~  232 (622)
                        .+.+||..+++-...-......         .....+.+  ++++++.|+.+       ..+.+||..+.+-...  +
T Consensus        77 ~~~~~~~d~~~~~W~~~~~~p~~r---------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~  145 (318)
T 2woz_A           77 QSYFFQLDNVSSEWVGLPPLPSAR---------CLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL  145 (318)
T ss_dssp             CBEEEEEETTTTEEEECSCBSSCB---------CSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC
T ss_pred             cccEEEEeCCCCcEEECCCCCccc---------cccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC
Confidence              1667787765433221111100         01122222  56677777653       3477888877654332  1


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCC-----
Q psy2110         233 SAHMHPVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMR-----  299 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~-----  299 (622)
                      ......- +++. .+++.++.|+.      -..+.+||+.+.+....-..+.+.  .+++..  +..+++.|+.+     
T Consensus       146 p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  221 (318)
T 2woz_A          146 PIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLS  221 (318)
T ss_dssp             SSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEE
T ss_pred             CCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCcc
Confidence            1111111 1222 36666666653      235999999988765543322211  122222  33566666543     


Q ss_pred             CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC--------------CeEEEEeCCCccE
Q psy2110         300 HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK--------------GKVLVLSCPALEL  354 (622)
Q Consensus       300 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~  354 (622)
                      ..+.+||+.+..-  +..+.......  .+...+++.++.|+.+              ..+.+||+.+.+-
T Consensus       222 ~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  290 (318)
T 2woz_A          222 ASVEAFDLKTNKWEVMTEFPQERSSI--SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW  290 (318)
T ss_dssp             EEEEEEETTTCCEEECCCCSSCCBSC--EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred             ceEEEEECCCCeEEECCCCCCcccce--EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence            2466788766532  22222111111  1223456677776643              3466777766543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.09  E-value=0.045  Score=51.89  Aligned_cols=182  Identities=10%  Similarity=0.119  Sum_probs=92.2

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----CC-------eEEEEEc
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DG-------RIVLWDF  223 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg-------~i~iwd~  223 (622)
                      +++.|+.  .+..||..+++-.. ........         .....+...++.+++.|+.    ++       .+.+||.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~   85 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYL-TALAEQIP---------RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDN   85 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEE-EEECTTSC---------SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEET
T ss_pred             hhhcccc--ceEEECCCCCceec-ccCCccCC---------ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeC
Confidence            4455553  47888988765433 11110000         0112233456788888873    11       1677887


Q ss_pred             CCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCC-------CcEEEEECCCCcEEEEEeCCCCeE--EEEEeCCCCeE
Q psy2110         224 LTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTD-------NNVCIWDVLTGECEQKYRFPSPIL--KVQFHPRNDHM  292 (622)
Q Consensus       224 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~  292 (622)
                      .+.+....  +...........+  +++.++.|+.+       ..+.+||..+.+....-..+.+..  +++. . +..+
T Consensus        86 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i  161 (318)
T 2woz_A           86 VSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H-NGMI  161 (318)
T ss_dssp             TTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E-TTEE
T ss_pred             CCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E-CCEE
Confidence            77654322  1111111122222  56677777653       258889998877655433332221  1222 2 3456


Q ss_pred             EEEeeC------CCcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccE
Q psy2110         293 FLVCPM------RHAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALEL  354 (622)
Q Consensus       293 ~~~~~~------~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~  354 (622)
                      ++.|+.      -..+.+||+.+..-  +..+....... ++ ..-+++.++.|+.+     ..+.+||+.+.+-
T Consensus       162 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  234 (318)
T 2woz_A          162 YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKW  234 (318)
T ss_dssp             EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred             EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eE-EEECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence            666653      23588889876532  22222211111 22 22366777777643     3577899887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.06  E-value=0.043  Score=53.06  Aligned_cols=236  Identities=11%  Similarity=0.050  Sum_probs=113.9

Q ss_pred             CCCEEEEecCCCCeEEEEEcCC--CceEEEEec-c-CcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-C----
Q psy2110          92 DGEYVCAGSARQHALYIWEKSV--GNLVKILHG-T-KGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-D----  162 (622)
Q Consensus        92 ~~~~l~~~~~~~~~i~vwd~~~--~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-d----  162 (622)
                      +++.++.|+.+...+.++|..+  .+-. .+.. . ....            .    .+++. -++++++.|+. +    
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~------------~----~~~~~-~~~~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRD------------Q----ATSAF-IDGNLYVFGGIGKNSEG   80 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCB------------S----CEEEE-ETTEEEEECCEEECTTS
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCc------------c----ceEEE-ECCEEEEEcCCCCCCCc
Confidence            7777788876667888999864  2221 1111 1 0000            0    12222 25677777765 2    


Q ss_pred             -----CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----------------------
Q psy2110         163 -----GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----------------------  215 (622)
Q Consensus       163 -----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----------------------  215 (622)
                           ..+.+||..+.+-...-... +...       ....++.  .++++++.|+.+                      
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r-------~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  150 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHA-PMGM-------AGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID  150 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCC-SSCC-------SSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cceeeccEEEEeCCCCcEEECCCCC-Cccc-------ccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence                 46888888776433221111 0000       1112222  467777888754                      


Q ss_pred             -----------------CeEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeC------CCcEEEEEC--CCC
Q psy2110         216 -----------------GRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISAST------DNNVCIWDV--LTG  268 (622)
Q Consensus       216 -----------------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~--~~~  268 (622)
                                       ..+.+||..+.+-...  +......-.+++.. +++.++.|+.      ...+.+||+  .+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~  229 (357)
T 2uvk_A          151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL  229 (357)
T ss_dssp             HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred             hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence                             5788999887654332  22111110223322 5566666653      245777887  444


Q ss_pred             cEEEEEeC--CCCe-EEEEEeCCCCeEEEEeeCC----------------------CcEEEEEecCCc--eeecccCCCC
Q psy2110         269 ECEQKYRF--PSPI-LKVQFHPRNDHMFLVCPMR----------------------HAAVLVDTDGDH--QIVPIDEDSD  321 (622)
Q Consensus       269 ~~~~~~~~--~~~v-~~~~~~~~~~~~~~~~~~~----------------------~~i~~~d~~~~~--~~~~~~~~~~  321 (622)
                      +....-..  +... ...+... +..+++.++.+                      ..+.+||+.+..  .+..+.....
T Consensus       230 ~W~~~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  308 (357)
T 2uvk_A          230 KWNKLAPVSSPDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA  308 (357)
T ss_dssp             EEEECCCSSTTTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB
T ss_pred             cEEecCCCCCCcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc
Confidence            44332222  1111 1112222 33467776532                      246788887542  3333332222


Q ss_pred             ceEEEEEeeCCCEEEEEecCC------eEEEEeCCCccEEEEEe
Q psy2110         322 LSIVASFDRRGQHVVTGNSKG------KVLVLSCPALELKASFK  359 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~  359 (622)
                      ..  .+...+++.++.|+.++      .+.++++++++.+....
T Consensus       309 ~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          309 YG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             SS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             cc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            22  22345677888887543      46666887777655433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.98  E-value=0.11  Score=58.14  Aligned_cols=254  Identities=7%  Similarity=0.038  Sum_probs=146.6

Q ss_pred             CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccccccccccc
Q psy2110         104 HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM  183 (622)
Q Consensus       104 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~  183 (622)
                      ..|.|.|+.++..+.+..-...                    +.-.+|..+.||.-. ..++.|+|+++...++.+....
T Consensus        48 ~~vvIidl~~~~~~~rrpi~Ad--------------------sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e  106 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPISAD--------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD  106 (1630)
T ss_pred             ceEEEEECCCCCCcccccccch--------------------hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC
Confidence            5789999987654422211111                    334678888777665 5789999999876665554432


Q ss_pred             CCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceEEEeccC----CcCeeEEEEcCCCCEEEEEe---
Q psy2110         184 HPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-RGIAKIISAH----MHPVCSISWSRNGYKIISAS---  255 (622)
Q Consensus       184 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~---  255 (622)
                                  .|.-=.|-.... |+..+ +..|+.|++.. ..+.+.+..|    ...|..-..+++.++++..+   
T Consensus       107 ------------~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~  172 (1630)
T 1xi4_A          107 ------------DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA  172 (1630)
T ss_pred             ------------CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence                        244445554443 43333 46899999964 2344444444    35677778888999877544   


Q ss_pred             ----CCCcEEEEECCCCcEEEEEeCCCCeEEEEEe--CCCCeEEEEee---CCCcEEEEEecCC---cee-----ec--c
Q psy2110         256 ----TDNNVCIWDVLTGECEQKYRFPSPILKVQFH--PRNDHMFLVCP---MRHAAVLVDTDGD---HQI-----VP--I  316 (622)
Q Consensus       256 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~---~~~~i~~~d~~~~---~~~-----~~--~  316 (622)
                          -.|.+.+|..+.+.....-.|......+...  +....+++.+.   ..+.+.+.++...   .+.     ..  +
T Consensus       173 ~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~  252 (1630)
T 1xi4_A          173 QQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF  252 (1630)
T ss_pred             CCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccC
Confidence                2477888887654321111121111111111  11122222221   2357777777432   110     00  1


Q ss_pred             --cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         317 --DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       317 --~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                        ....+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|...+.+....-++.....|.|.-..++
T Consensus       253 ~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             CcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence              1123445567778877888888999999999999999887766666666555554443334444566666555554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.84  E-value=0.11  Score=50.10  Aligned_cols=226  Identities=11%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             CCCEEEEeeCC-CcEEEEecCC--cccccccccccC-CCcccccccccceEEEEECCCCCEEEEEeC-C---------Ce
Q psy2110         152 RGTLLAVGCND-GRIVLWDFLT--RGIAKIISAHMH-PEFDGALDCISLAVTCAFNKRGTLLAVGCN-D---------GR  217 (622)
Q Consensus       152 d~~~l~s~~~d-g~i~vw~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-d---------g~  217 (622)
                      ++++++.|+.+ ..+.+||..+  .+-. .+.. .+ ...       .....+.+  ++++++.|+. +         ..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~-~p~~~R-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~   87 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAA-FPGGPR-------DQATSAFI--DGNLYVFGGIGKNSEGLTQVFND   87 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCC-CTTCCC-------BSCEEEEE--TTEEEEECCEEECTTSCEEECCC
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCee-ECCC-CCCCcC-------ccceEEEE--CCEEEEEcCCCCCCCccceeecc
Confidence            56666776643 4688888764  2211 1111 11 000       11122223  4666777665 1         45


Q ss_pred             EEEEEcCCCceEEEeccC-CcCeeEEEEcCCCCEEEEEeCC---------------------------------------
Q psy2110         218 IVLWDFLTRGIAKIISAH-MHPVCSISWSRNGYKIISASTD---------------------------------------  257 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d---------------------------------------  257 (622)
                      +.+||..+.+-...-... .......+...+++.++.|+.+                                       
T Consensus        88 v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (357)
T 2uvk_A           88 VHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN  167 (357)
T ss_dssp             EEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCC
T ss_pred             EEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCc
Confidence            888998876543221111 1111111222467777778754                                       


Q ss_pred             CcEEEEECCCCcEEEEEeCCC--Ce-EEEEEeCCCCeEEEEeeC------CCcEEEEEe--cCCc--eeecccCCCCceE
Q psy2110         258 NNVCIWDVLTGECEQKYRFPS--PI-LKVQFHPRNDHMFLVCPM------RHAAVLVDT--DGDH--QIVPIDEDSDLSI  324 (622)
Q Consensus       258 ~~i~iwd~~~~~~~~~~~~~~--~v-~~~~~~~~~~~~~~~~~~------~~~i~~~d~--~~~~--~~~~~~~~~~~~~  324 (622)
                      ..+.+||+.+.+....-..+.  .. .+++..  +..+++.++.      ...+..||+  .+..  .+..+........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            479999998887655544332  22 233333  3456666653      345677776  3322  2222211111112


Q ss_pred             EEEEeeCCCEEEEEecC----------------------CeEEEEeCCCcc--EEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110         325 VASFDRRGQHVVTGNSK----------------------GKVLVLSCPALE--LKASFKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       325 ~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      ..+...++++++.|+.+                      ..+.+||+.+.+  .+..+........+  ..-+++.++.|
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~G  323 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIG  323 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEe
Confidence            22334467777777632                      247789987654  33333222222122  23366777777


Q ss_pred             eCCC------cEEEEecc
Q psy2110         381 TGDR------LIRVYNHQ  392 (622)
Q Consensus       381 ~~d~------~i~i~d~~  392 (622)
                      +.++      .|.+++++
T Consensus       324 G~~~~~~~~~~v~~l~~~  341 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVK  341 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-
T ss_pred             eeCCCCCEeeeEEEEEEc
Confidence            7542      24445555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.82  E-value=0.11  Score=58.07  Aligned_cols=264  Identities=8%  Similarity=0.049  Sum_probs=148.9

Q ss_pred             CCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEE
Q psy2110         215 DGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFL  294 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  294 (622)
                      ..+|.|.|+.++..+....   -.--+.-.+|..+.|+.-. ..++.|+|+.+.+.++.+.++.+|.-=.|-.... +.+
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~l  121 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VAL  121 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEE
Confidence            3478899988765432111   1112334567666555543 6799999999999999998888888778876554 333


Q ss_pred             EeeCCCcEEEEEecCC-ceeecccCC----CCceEEEEEeeCCCEEEEEe-------cCCeEEEEeCCCccEEEEEecCC
Q psy2110         295 VCPMRHAAVLVDTDGD-HQIVPIDED----SDLSIVASFDRRGQHVVTGN-------SKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      +  .+..|+-|++.+. .+...+..|    ...|.....+++.++++..+       -.|.+.+|.... +.-+.+.+|.
T Consensus       122 V--T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha  198 (1630)
T 1xi4_A          122 V--TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA  198 (1630)
T ss_pred             E--cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhH
Confidence            3  3567999999643 333333333    45566677788888876533       347888888764 3344455665


Q ss_pred             CCEEEEEEc--C-CCCEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeeccc-cceeeeeEEEcCCCCeEEEeeC
Q psy2110         363 TAIKSIEFA--R-RGNCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLV-NKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       363 ~~i~~~~~s--~-~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      .....+...  + ....++.+..   .+.++|.++.........-..+.+..+..+. ......++..|+.-..+...+.
T Consensus       199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk  278 (1630)
T 1xi4_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK  278 (1630)
T ss_pred             hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence            544444332  1 1223333322   3689998886421110000001111111110 1112245677887777777775


Q ss_pred             CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                       -|.|++||+.+|.++..-+-.... |...+-+....-++... .|.|.--.++
T Consensus       279 -~G~~~~~d~~t~~~i~~~ris~~~-iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          279 -YGYIHLYDLETGTCIYMNRISGET-IFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             -CceEEEEecccchhhhhccccCCc-eEEeccCCCCCceEEEcCCceEEEEEEc
Confidence             789999999999887654433322 44333333322333333 5655544443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.71  E-value=0.18  Score=48.72  Aligned_cols=153  Identities=12%  Similarity=0.165  Sum_probs=88.9

Q ss_pred             EcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEE
Q psy2110          89 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  168 (622)
Q Consensus        89 ~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw  168 (622)
                      .+.+|..|+++-  ++.||.-++..+...+.++....-.             ...|..+..+|+|++||..+. ..|.|-
T Consensus        28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~-------------f~~i~qlvlSpsG~lLAl~g~-~~V~Vv   91 (452)
T 3pbp_A           28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLV-------------LDDTFHVISSTSGDLLCLFND-NEIFVM   91 (452)
T ss_dssp             EETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCC-------------CCTTCEEEECTTSSEEEEECS-SEEEEE
T ss_pred             EEcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccc-------------cCceeEEEECCCCCEEEEecC-CeEEEE
Confidence            344566666554  2677777776444444444331000             001258999999999999865 589998


Q ss_pred             ecCCcccccc-------cc---cccCCCcccccccccceEEEEECCC---CCEEEEEeCCCeEEEEEcCCCc--eEEEec
Q psy2110         169 DFLTRGIAKI-------IS---AHMHPEFDGALDCISLAVTCAFNKR---GTLLAVGCNDGRIVLWDFLTRG--IAKIIS  233 (622)
Q Consensus       169 ~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~i~iwd~~~~~--~~~~~~  233 (622)
                      .+..+.....       ++   .+..+   ........|..+.|+|-   +..|++-..|+.|++||+....  +. .+.
T Consensus        92 ~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~  167 (452)
T 3pbp_A           92 EVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN  167 (452)
T ss_dssp             ECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES
T ss_pred             EecCccccCcccccccccceeEEEcCC---cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh
Confidence            8874321111       00   00000   00112356999999995   4578888999999999997521  22 232


Q ss_pred             ---------cCCcCeeEEEEcCCCCEEEEEe--CCCcEE
Q psy2110         234 ---------AHMHPVCSISWSRNGYKIISAS--TDNNVC  261 (622)
Q Consensus       234 ---------~~~~~v~~~~~s~~~~~l~s~~--~d~~i~  261 (622)
                               .....|.+++|..++-.|+..+  ..|.|+
T Consensus       168 k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          168 KPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             CCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence                     2225677888887665555433  445444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.018  Score=54.52  Aligned_cols=114  Identities=15%  Similarity=0.074  Sum_probs=71.2

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEE---EECCCCCEEEEE-eCCCeEEEEEcCCCceE
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC---AFNKRGTLLAVG-CNDGRIVLWDFLTRGIA  229 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~  229 (622)
                      .+++.++.||.|.-.|..+|+.+-.+......          .+...   +...++..++.. +.||.|..++..+|...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~----------p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQ----------PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSC----------CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccC----------CcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence            47888999999999999999877776554100          00110   001123333333 57999999998887554


Q ss_pred             EEecc----CCcCeeE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Q psy2110         230 KIISA----HMHPVCS---ISW-----SRNGYKIISASTDNNVCIWDVLTGECEQKYRFP  277 (622)
Q Consensus       230 ~~~~~----~~~~v~~---~~~-----s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  277 (622)
                      ..+..    ...++..   ...     +..+..+++++.+|.+...|+.+|+.+..+...
T Consensus        81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            43321    1112221   000     013457889999999999999999999998854

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.35  E-value=0.86  Score=45.55  Aligned_cols=254  Identities=13%  Similarity=0.130  Sum_probs=141.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccC-------------------------CcCee--EEEEcC---CCCEEEEEeC-
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAH-------------------------MHPVC--SISWSR---NGYKIISAST-  256 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~--~~~~s~---~~~~l~s~~~-  256 (622)
                      .+.+|+..|.|+|+-+.+++.+..+.-.                         .+...  .+++..   ||++|+.-.. 
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3667888999999999888877665210                         01111  233332   6778888765 


Q ss_pred             CCcEEEEECCCCcEEEEEe--CCCCeEEEEEe--CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCC
Q psy2110         257 DNNVCIWDVLTGECEQKYR--FPSPILKVQFH--PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG  332 (622)
Q Consensus       257 d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (622)
                      ...|-..+++..++-+.+.  ....+..+.+-  |+..++++.+-. . +=   +.+......+..            ..
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~-~-~P---~pndg~~~~~~~------------~~  214 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEF-I-IP---HPNDGKVFDLQD------------EN  214 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECS-C-EE---SSCSSSCCCTTS------------TT
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEeccee-e-cc---CCCCCcccccCC------------hh
Confidence            4578888999988887777  44678888886  566654444321 1 10   000000000000            01


Q ss_pred             CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEeccccccc
Q psy2110         333 QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD---------------RLIRVYNHQEVLNA  397 (622)
Q Consensus       333 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------~~i~i~d~~~~~~~  397 (622)
                      ++       +.....|..+.+...++.. .+........++|++.++.+.+               ..+.++|+......
T Consensus       215 ~y-------~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~  286 (638)
T 3sbq_A          215 SY-------TMYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAA  286 (638)
T ss_dssp             EE-------EEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHH
T ss_pred             hc-------eEEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHH
Confidence            11       0122334444444444332 2334445667888887776632               23666766532221


Q ss_pred             CCCCCCCc-----ceeeeccc-------------cceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCC------Cee---
Q psy2110         398 GKDGDPEP-----IQKLQDLV-------------NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV------GNL---  450 (622)
Q Consensus       398 ~~~~~~~~-----~~~~~~~~-------------~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~------~~~---  450 (622)
                      ...+....     +..+....             .......+.++|||+|+++++.-+.++.+++...      +++   
T Consensus       287 vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~  366 (638)
T 3sbq_A          287 VKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP  366 (638)
T ss_dssp             HHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG
T ss_pred             HhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc
Confidence            11111111     11111111             0011135789999999999887788999999873      221   


Q ss_pred             ----EEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         451 ----VKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       451 ----~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                          +.....  +......+|.++|....+.- |..|-.|++.
T Consensus       367 ~~~~~ae~e~--GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~  407 (638)
T 3sbq_A          367 RDVIVGEPEL--GLGPLHTTFDGRGNAYTTLFIDSQVVKWNME  407 (638)
T ss_dssp             GGGEEECCBC--CSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccceEeeccC--CCcccEEEECCCCceEeeeeecceEEEEecc
Confidence                223332  22378999999994334444 9999999986

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.14  E-value=0.4  Score=41.64  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCc--------eEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         278 SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL--------SIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       278 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ..+..++|+|++. +.++  .++.++-.+..+.....-+.. ...        ...+.|+++|.+.++  .||.|+-++.
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            4677999999876 4444  666666555533211110000 111        357889999988888  5699988876


Q ss_pred             CCccE-------EEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110         350 PALEL-------KASFKASTTAIKSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       350 ~~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      .+...       ...-..--..+..|.+.|+|.+.++.  |+.++
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            43211       11111222567899999999977666  77654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.05  E-value=0.51  Score=50.07  Aligned_cols=197  Identities=12%  Similarity=0.127  Sum_probs=106.6

Q ss_pred             CCCCEEEEeeCC----CcEEEEecCCccccccc-cc---ccCCCcccccccccceEEEEECCCCCEEEEEeCC------C
Q psy2110         151 KRGTLLAVGCND----GRIVLWDFLTRGIAKII-SA---HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------G  216 (622)
Q Consensus       151 ~d~~~l~s~~~d----g~i~vw~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g  216 (622)
                      .++.+++.|+.+    ..+.+||..+++....- ..   ......       ..-..+.+..++++++.|+.+      .
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R-------~~hs~~~~~~~~~lyv~GG~~~~~~~~~  468 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR-------MCHTFTTISRNNQLLLIGGRKAPHQGLS  468 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC-------BSCEEEEETTTTEEEEECCBSSTTCBCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc-------cceEEEEEccCCEEEEEcCCCCCCCccc
Confidence            456777777753    46888888776433222 10   011100       112333443367777777643      3


Q ss_pred             eEEEEEcCCCceEEE--eccCCcCeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEe---C---CCCeEEEEEe
Q psy2110         217 RIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIISASTDN--NVCIWDVLTGECEQKYR---F---PSPILKVQFH  286 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~---~---~~~v~~~~~~  286 (622)
                      .+.+||..+.+....  +..... -.+++...+++.++.|+.++  .+.+||..+.+....-.   .   .....++.+.
T Consensus       469 dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             CCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred             cEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence            578899887653322  111111 12233324788888887654  79999999877554332   1   1122335556


Q ss_pred             CCCCeEEEEeeCC-------CcEEEEEecCCce--------eecccCCCCceEEEEEeeCCCEEEEEec--------CCe
Q psy2110         287 PRNDHMFLVCPMR-------HAAVLVDTDGDHQ--------IVPIDEDSDLSIVASFDRRGQHVVTGNS--------KGK  343 (622)
Q Consensus       287 ~~~~~~~~~~~~~-------~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~  343 (622)
                      .+...+++.|+.+       ..+..||+.+..-        +.........-..++...+++.++.|+.        ...
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  627 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS  627 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe
Confidence            5545677777652       3588899887651        1111111111123333333777777774        345


Q ss_pred             EEEEeCCCccEE
Q psy2110         344 VLVLSCPALELK  355 (622)
Q Consensus       344 i~i~d~~~~~~~  355 (622)
                      +.+||+.+.+-.
T Consensus       628 v~~yd~~t~~W~  639 (695)
T 2zwa_A          628 IISLDPLSETLT  639 (695)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCeEE
Confidence            899999877644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.88  E-value=0.14  Score=44.46  Aligned_cols=145  Identities=10%  Similarity=-0.040  Sum_probs=82.5

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE------EEEEeC--CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC------EQKYRF--PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      ..+..++|+|+|.+.+.  .+|.++-.+..+...      ...+..  -....++.|.|++..+ ++  .++.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LY-av--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLY-AV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEE-EE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEE-Ee--CCCEEEEeCCC
Confidence            47789999999985555  677777766654221      122210  0124788899988733 33  55888776653


Q ss_pred             CCceeec-------ccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc------EEEEEe-cCCCCEEEEEEcCCC
Q psy2110         309 GDHQIVP-------IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE------LKASFK-ASTTAIKSIEFARRG  374 (622)
Q Consensus       309 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-~~~~~i~~~~~s~~~  374 (622)
                      +.....-       -...-..+..+.+.|+|.+.++.  ++.++-....+..      ....+- .....-+-+.|.+++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            2211100       01111356789999999888776  7776544333221      111111 233345567799999


Q ss_pred             CEEEEEeCCCcEEEEecc
Q psy2110         375 NCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~  392 (622)
                      ...++.  ++  ++|...
T Consensus       194 ~l~~v~--~g--~~Y~~~  207 (236)
T 1tl2_A          194 TLFGVQ--GG--KFYEDY  207 (236)
T ss_dssp             CEEEEE--TT--EEEEES
T ss_pred             cEEEEe--CC--eEEecC
Confidence            877666  66  444443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.12  Score=48.77  Aligned_cols=112  Identities=13%  Similarity=0.125  Sum_probs=72.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEeCC--CCeEEEEEe--CCCCeEEEEe-eCCCcEEEEEecCCceeecccC----C
Q psy2110         249 YKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFH--PRNDHMFLVC-PMRHAAVLVDTDGDHQIVPIDE----D  319 (622)
Q Consensus       249 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~--~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~----~  319 (622)
                      ..++.++.||.|.-+|..+|+....+...  .++....-.  +.+..+++.. ..+|.++.++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999888754  333321100  1122344444 5789998888776643332221    1


Q ss_pred             CCceEE---EEE-e----eCCCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110         320 SDLSIV---ASF-D----RRGQHVVTGNSKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       320 ~~~~~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      ...+..   ..+ .    ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            111110   000 0    1456889999999999999999999998874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.46  E-value=0.71  Score=48.96  Aligned_cols=189  Identities=12%  Similarity=0.086  Sum_probs=100.6

Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCCCceEEEe-c------cCCcCeeEEEEcC-CCCEEEEEeCC------CcEEEEEC
Q psy2110         204 KRGTLLAVGCND----GRIVLWDFLTRGIAKII-S------AHMHPVCSISWSR-NGYKIISASTD------NNVCIWDV  265 (622)
Q Consensus       204 ~~g~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~~~~s~-~~~~l~s~~~d------~~i~iwd~  265 (622)
                      .++.+++.|+.+    ..+.+||..+++....- .      .....-.+++... +++.++.|+.+      +.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777777743    46888998877644322 1      1111112333333 67777777643      35889999


Q ss_pred             CCCcEEEEEeCCCCe--EEEEEeCCCCeEEEEeeCCC--cEEEEEecCCceeec-----ccCCCCceEEEEEeeC-CCEE
Q psy2110         266 LTGECEQKYRFPSPI--LKVQFHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVP-----IDEDSDLSIVASFDRR-GQHV  335 (622)
Q Consensus       266 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~l  335 (622)
                      .+.+....-..+.+.  .+++...++ .+++.|+.++  .+.+||..+..-...     ..........+.+..+ ++.+
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            887655443322221  222232344 4677766544  688898876532211     1112222233555555 6677


Q ss_pred             EEEec--C-----CeEEEEeCCCccE-----EEEEec---CCCCEEEEEEcCCCCEEEEEeC--------CCcEEEEecc
Q psy2110         336 VTGNS--K-----GKVLVLSCPALEL-----KASFKA---STTAIKSIEFARRGNCLLVNTG--------DRLIRVYNHQ  392 (622)
Q Consensus       336 ~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~~s~~~~~l~~~~~--------d~~i~i~d~~  392 (622)
                      +.|+.  +     ..+.+||+.+.+.     ...+..   ....-.+++...+++.++.|+.        ...|.+||+.
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            77765  2     4688999887661     122211   1111112333333677777763        3458899887


Q ss_pred             c
Q psy2110         393 E  393 (622)
Q Consensus       393 ~  393 (622)
                      +
T Consensus       635 t  635 (695)
T 2zwa_A          635 S  635 (695)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.43  E-value=6.7  Score=38.92  Aligned_cols=114  Identities=12%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             eeEEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCccc-ccccccceEEEEECCC---CCEEEEE-eC--C
Q psy2110         144 AVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG-ALDCISLAVTCAFNKR---GTLLAVG-CN--D  215 (622)
Q Consensus       144 v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~---g~~l~~~-~~--d  215 (622)
                      .+.|+|.|||. .|+++...|.|++++.........+..-......+ ..........++|+|+   ..+|++. +.  +
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            36999999996 56666788999999743221111111000000000 0000134678999996   2333332 21  1


Q ss_pred             ----------CeEEEEEcCCC----------ceEEEec--cCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110         216 ----------GRIVLWDFLTR----------GIAKIIS--AHMHPVCSISWSRNGYKIISASTD  257 (622)
Q Consensus       216 ----------g~i~iwd~~~~----------~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d  257 (622)
                                ..|.-|.+..+          +.+..+.  ...+....|+|.|||.+.++.+..
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence                      13444665421          2222222  223456889999999877766543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.34  E-value=5.8  Score=37.95  Aligned_cols=192  Identities=13%  Similarity=0.120  Sum_probs=99.1

Q ss_pred             CcEEEEECCCC--cEEEEEeCC-------CCeEEEEEe---CC----CCeEEEEeeCCCcEEEEEecCCceeecccCCCC
Q psy2110         258 NNVCIWDVLTG--ECEQKYRFP-------SPILKVQFH---PR----NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSD  321 (622)
Q Consensus       258 ~~i~iwd~~~~--~~~~~~~~~-------~~v~~~~~~---~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  321 (622)
                      -.|.+||+.+.  +.++.+..+       +.+..+.+.   |.    +...+++-.....+.++|+.+++..+.....  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence            36888999999  888888754       236677777   22    2334444445678999999887665544211  


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEeccccccc
Q psy2110         322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR----GNCLLVNTGDRLIRVYNHQEVLNA  397 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~d~~i~i~d~~~~~~~  397 (622)
                            +.|+....++  -+|.-.-           +   ...+..|+++|+    ++.|......+. ++|.+.+....
T Consensus       201 ------~~pd~~~~~~--i~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~  257 (381)
T 3q6k_A          201 ------FKAERPTKFD--YGGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELK  257 (381)
T ss_dssp             ------GSCCSCEEEE--ETTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHS
T ss_pred             ------CccccCcceE--ECCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhh
Confidence                  2233111111  1221111           1   256889999998    788888765542 34444322111


Q ss_pred             CCCCCCCcceeeeccccceeeeeEEEc-CCCCeEEEeeCCCCeEEEEECCC-----CeeEEEEecCCCCceeEEEECCCC
Q psy2110         398 GKDGDPEPIQKLQDLVNKTMWKKCCFS-GDGEYVCAGSARQHALYIWEKSV-----GNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                      ... ....++.+-..........+++. .+|...++-- ..+.|..|+..+     +......+...-.-+..+.+.+++
T Consensus       258 ~~~-~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~-~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g  335 (381)
T 3q6k_A          258 QKG-GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEA-NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG  335 (381)
T ss_dssp             STT-CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEES-SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred             Ccc-hhhceEEeeecCCCCCcceEEEeCCCCeEEEEec-cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence            111 11222222211111222345675 4565454444 488999999875     122222222221225566666555


Q ss_pred             CEEEE
Q psy2110         472 PIIAS  476 (622)
Q Consensus       472 ~~l~s  476 (622)
                      .+.+.
T Consensus       336 ~Lwv~  340 (381)
T 3q6k_A          336 GLWFM  340 (381)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            54333

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.04  E-value=5.9  Score=37.15  Aligned_cols=206  Identities=10%  Similarity=0.023  Sum_probs=104.7

Q ss_pred             cCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCc
Q psy2110          39 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGN  115 (622)
Q Consensus        39 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~  115 (622)
                      ....++.-+..|.+..................++..+..+.....+.++ .+.+  +..++++.+.. |.++--.+..-.
T Consensus        52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~~l~~~~  130 (327)
T 3uc1_A           52 THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKSKLTDFD  130 (327)
T ss_dssp             TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEEEGGGGC
T ss_pred             CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEeEHHHhh
Confidence            3444555555555544443332222222333444444445455555544 4443  57788888865 999988765322


Q ss_pred             e-------EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecC--CcccccccccccCCC
Q psy2110         116 L-------VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL--TRGIAKIISAHMHPE  186 (622)
Q Consensus       116 ~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~  186 (622)
                      .       ...++.. +.+                 ..+........|+..+..|.+..+...  .-.....-   ....
T Consensus       131 ~~~r~G~~~i~lke~-D~l-----------------v~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~---a~Gv  189 (327)
T 3uc1_A          131 SNRSGGIVAVNLRDN-DEL-----------------VGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA---TSGV  189 (327)
T ss_dssp             CCCSSCEESCBCCTT-CCE-----------------EEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT---SBCE
T ss_pred             ccccCceEEEEECCC-CEE-----------------EEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC---CCCe
Confidence            1       1112221 222                 234344445567777888988888766  21111000   0000


Q ss_pred             cccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------eEEEec--cCCcCeeEEEEcCCCCEEEEEeCC
Q psy2110         187 FDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-------IAKIIS--AHMHPVCSISWSRNGYKIISASTD  257 (622)
Q Consensus       187 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~-------~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d  257 (622)
                      ....+.....|.++...+++..|+..+..|.++.-.+..-.       -+..++  .-.+.+..+....+...++..+.+
T Consensus       190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~  269 (327)
T 3uc1_A          190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG  269 (327)
T ss_dssp             ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred             eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence            00111122346666665666788899999999988765321       122222  212345444444444566666777


Q ss_pred             CcEEEEECC
Q psy2110         258 NNVCIWDVL  266 (622)
Q Consensus       258 ~~i~iwd~~  266 (622)
                      |.+.-++..
T Consensus       270 G~~ir~~~~  278 (327)
T 3uc1_A          270 GGVIRTAAR  278 (327)
T ss_dssp             GCEEEEEGG
T ss_pred             CeEEEEehh
Confidence            777666653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.16  E-value=6.9  Score=35.82  Aligned_cols=218  Identities=14%  Similarity=0.066  Sum_probs=106.0

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ..++..... .++. . ||.|..|-......+..-..           ....|..++...... ++. . +|.|+.|-..
T Consensus        27 ~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~-----------~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n   89 (282)
T 3qhy_B           27 DAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAA-----------TQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGN   89 (282)
T ss_dssp             CEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGG-----------GGSCCCEEEECSSEE-EEE-E-TTEEEEEECC
T ss_pred             cEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCcc-----------CCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCC
Confidence            456554332 2333 4 89999997554322211000           012355555554332 333 4 8999998765


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT-GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      ....+..-..-...|..++...+  +.+.-. +|.|+.|-... ++.-........|..++....  +.++. . ++.++
T Consensus        90 ~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l-~-~G~v~  162 (282)
T 3qhy_B           90 EDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAV-K-NGGVI  162 (282)
T ss_dssp             TTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-E-TTEEE
T ss_pred             CCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEE-E-CCEEE
Confidence            43221111111246777776543  333344 89999997653 221111112345655554432  23333 3 68888


Q ss_pred             EEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q psy2110         304 LVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGD  383 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  383 (622)
                      .|-.....++.........+..++...  .+.++- .+|.|+.|-....-.+-.-......|..++-..... ++..  |
T Consensus       163 ~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~  236 (282)
T 3qhy_B          163 AWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK--N  236 (282)
T ss_dssp             EEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--T
T ss_pred             EecCCCCCCCCCceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--C
Confidence            887654322211111123454444433  333333 589999997543211111111123566776554433 3333  9


Q ss_pred             CcEEEEecc
Q psy2110         384 RLIRVYNHQ  392 (622)
Q Consensus       384 ~~i~i~d~~  392 (622)
                      +.|+.|-..
T Consensus       237 g~v~~wG~n  245 (282)
T 3qhy_B          237 GKVIAWGSS  245 (282)
T ss_dssp             TEEEEESTT
T ss_pred             CEEEEecCC
Confidence            999999766

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=91.44  E-value=8.9  Score=35.60  Aligned_cols=192  Identities=13%  Similarity=0.035  Sum_probs=95.2

Q ss_pred             cCCcEEEeccCCCeEEEEeccccce-----------------------ecccCceEEeecCCceEEEeechhhhhcCCCC
Q psy2110          11 RRGQHVVTGNSKGKVLVLSCPALEL-----------------------KASRGNCLLVNTGDRLIRVYNHQEVLNAGKDG   67 (622)
Q Consensus        11 pdg~~latg~~dg~v~vwd~~~~~~-----------------------~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~   67 (622)
                      |+..++++.+.+|.|+--.......                       .......++..+..|.+.-.............
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a   80 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence            4556777778888887654432111                       12234455555666665555444333222222


Q ss_pred             CCccchhhhhhccccceeEE-EEc--CCCCEEEEecCCCCeEEEEEcCCCc-------eEEEEeccCcceeEEEEeecCc
Q psy2110          68 DPEPIQKLQDLVNKTMWKKC-CFS--GDGEYVCAGSARQHALYIWEKSVGN-------LVKILHGTKGELLLDVVEFDGA  137 (622)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~-~~s--p~~~~l~~~~~~~~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~  137 (622)
                      ...+...+..+.....+.++ ...  .++.+++..+.. |.++--.+..-.       ....+..+ +.+          
T Consensus        81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~l----------  148 (307)
T 1zi0_A           81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKTVLTEFNRLRTAGKVAIKLVDG-DEL----------  148 (307)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGTTCCTTCEESSCCCTT-CCE----------
T ss_pred             CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEEEHHHhhccccCCeEEEEECCC-CEE----------
Confidence            23333333334444455544 332  345667777765 899888764211       11112222 222          


Q ss_pred             cccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         138 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       138 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                             ..+....+...|+..+.+|.+..++...-.....   .......-.+.....|.++....++..+++.+..|.
T Consensus       149 -------v~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr---~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~  218 (307)
T 1zi0_A          149 -------IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGC---NTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGY  218 (307)
T ss_dssp             -------EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT---TCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSE
T ss_pred             -------EEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCC---CCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCc
Confidence                   2333334445677777888888777654211110   000000011111234556655555667888888999


Q ss_pred             EEEEEcC
Q psy2110         218 IVLWDFL  224 (622)
Q Consensus       218 i~iwd~~  224 (622)
                      ++-.++.
T Consensus       219 ~Kr~~~~  225 (307)
T 1zi0_A          219 GKRTAVA  225 (307)
T ss_dssp             EEEECGG
T ss_pred             eEEEEHH
Confidence            8888764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.59  E-value=12  Score=35.72  Aligned_cols=150  Identities=8%  Similarity=0.096  Sum_probs=89.6

Q ss_pred             eEEEEEcCCC--ceEEEEeccCcceeEEEEeecCccccccceeEEEEc---CC----CCEEEEee-CCCcEEEEecCCcc
Q psy2110         105 ALYIWEKSVG--NLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFN---KR----GTLLAVGC-NDGRIVLWDFLTRG  174 (622)
Q Consensus       105 ~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s---~d----~~~l~s~~-~dg~i~vw~~~~~~  174 (622)
                      .|.+||+.++  +.++++.-....+.           ..+.+..+++.   |+    +.++..+. ...-|.|+|+.+++
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~-----------~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~  192 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVE-----------KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD  192 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCC-----------CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcc-----------cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc
Confidence            6889999999  99988876544331           11223466665   22    33444333 45789999999987


Q ss_pred             cccccccccCCCcccc-------cccccceEEEEECCC----CCEEEEEeCCCeEEEEEcCC-----Cc---eEEEeccC
Q psy2110         175 IAKIISAHMHPEFDGA-------LDCISLAVTCAFNKR----GTLLAVGCNDGRIVLWDFLT-----RG---IAKIISAH  235 (622)
Q Consensus       175 ~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iwd~~~-----~~---~~~~~~~~  235 (622)
                      ..+.+.....+...+.       +.....+..++++|+    ++.|+.....+. ++|.+.+     ..   .++.+ +.
T Consensus       193 swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~  270 (381)
T 3q6k_A          193 SWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GN  270 (381)
T ss_dssp             EEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EE
T ss_pred             EEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-ee
Confidence            7666543333321111       111246889999998    788887765542 4444332     21   11222 22


Q ss_pred             C---cCeeEEEEc-CCCCEEEEEeCCCcEEEEECCC
Q psy2110         236 M---HPVCSISWS-RNGYKIISASTDNNVCIWDVLT  267 (622)
Q Consensus       236 ~---~~v~~~~~s-~~~~~l~s~~~d~~i~iwd~~~  267 (622)
                      .   ..-..+++. .+|..+++--..+.|..|+..+
T Consensus       271 kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          271 RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            2   233456675 5777777777778999999875

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.49  E-value=20  Score=37.89  Aligned_cols=94  Identities=12%  Similarity=0.142  Sum_probs=54.7

Q ss_pred             CCCeEEEEEcCCCc-------eEEE-ec-cCCcCeeEEEEcCCCCEEEEEeCCC--cEEEEECCCCc-EEEE-EeCC--C
Q psy2110         214 NDGRIVLWDFLTRG-------IAKI-IS-AHMHPVCSISWSRNGYKIISASTDN--NVCIWDVLTGE-CEQK-YRFP--S  278 (622)
Q Consensus       214 ~dg~i~iwd~~~~~-------~~~~-~~-~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~-~~~~-~~~~--~  278 (622)
                      ..+.|...++.++.       ..+. +. .....+..+.|..+ ..+++...++  .|.++++.+++ .... +..+  +
T Consensus       318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~  396 (711)
T 4hvt_A          318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN  396 (711)
T ss_dssp             CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred             CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence            46778899987642       1222 32 23456778888865 5666766666  46777776664 1223 3332  4


Q ss_pred             CeEEEEEeCCCCeEEEEeeC---CCcEEEEEec
Q psy2110         279 PILKVQFHPRNDHMFLVCPM---RHAAVLVDTD  308 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~  308 (622)
                      .+......+++..+++..+.   -..+..+|+.
T Consensus       397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            56666667777666655433   2345555543

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=90.47  E-value=12  Score=35.61  Aligned_cols=145  Identities=17%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             EccCCcEEEeccCCCeEEEEeccccc-----------ee------------cccCceEEeecCCceEEEeechhhhhcCC
Q psy2110           9 FDRRGQHVVTGNSKGKVLVLSCPALE-----------LK------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGK   65 (622)
Q Consensus         9 fspdg~~latg~~dg~v~vwd~~~~~-----------~~------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~   65 (622)
                      +-|+..++++.+.+|.|+--.+....           +.            ......++..+..|.+.-+..........
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r   82 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS   82 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence            44677888999999999975432210           00            22334455555566555444433322222


Q ss_pred             CCCCccchhhhhhccccceeEE-EEc--CCCCEEEEecCCCCeEEEEEcCCCce-------EEEEeccCcceeEEEEeec
Q psy2110          66 DGDPEPIQKLQDLVNKTMWKKC-CFS--GDGEYVCAGSARQHALYIWEKSVGNL-------VKILHGTKGELLLDVVEFD  135 (622)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~-~~s--p~~~~l~~~~~~~~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~  135 (622)
                      .....++..+..+.....+.++ .+.  .++.+|+.++.. |.++...+..-..       ...++. .+.+        
T Consensus        83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~l--------  152 (370)
T 3l6v_A           83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKTPLSEFAFRLARGKIAINLDE-GDAL--------  152 (370)
T ss_dssp             TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGCSCCTTCEESSCCCT-TCCE--------
T ss_pred             ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEeEHHHhhcccCCceEEEEeCC-CCEE--------
Confidence            2233333333233444455544 333  245678888765 8998887643221       111111 1122        


Q ss_pred             CccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCC
Q psy2110         136 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT  172 (622)
Q Consensus       136 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~  172 (622)
                               ..+........|+..+..|.+..+....
T Consensus       153 ---------v~v~~~~~~~~i~l~T~~G~~irf~~~~  180 (370)
T 3l6v_A          153 ---------VGVALTDGDRDVLLFASNGKTVRFGEST  180 (370)
T ss_dssp             ---------EEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred             ---------EEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence                     2333334455677777888887776543

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=90.27  E-value=12  Score=35.02  Aligned_cols=193  Identities=12%  Similarity=0.024  Sum_probs=98.0

Q ss_pred             cCCcEEEeccCCCeEEEEeccccc------------------eecccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110          11 RRGQHVVTGNSKGKVLVLSCPALE------------------LKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI   72 (622)
Q Consensus        11 pdg~~latg~~dg~v~vwd~~~~~------------------~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~   72 (622)
                      |+..++++.+.+|.|+--......                  +.......++..+..|.+.-................++
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i   82 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI   82 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence            566788888899999876543210                  01223445555566666555544433332222233333


Q ss_pred             hhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCc------eEE--EEeccCcceeEEEEeecCccccc
Q psy2110          73 QKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGN------LVK--ILHGTKGELLLDVVEFDGALDCI  141 (622)
Q Consensus        73 ~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~------~~~--~~~~~~~~v~~~~~~~~~~~~~~  141 (622)
                      ..+..+.....+.++ ...+  ++.+|+..+.. |.++.-.+..-.      -+.  .+... +.+              
T Consensus        83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~l--------------  146 (323)
T 1wp5_A           83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKKTELKHYKAQRYSKPLTGINLKND-DQV--------------  146 (323)
T ss_dssp             GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEEEEGGGGCCSCCSSCEECSCCCTT-CCE--------------
T ss_pred             hhccCCCCCCEEEEEEEecccCCCceEEEEeCC-CeEEEeEHHHhhhccccCceEEEEeCCC-CEE--------------
Confidence            333334444445544 4433  25677777765 999888764211      111  12211 222              


Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEEeCCCeEEE
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVGCNDGRIVL  220 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~i  220 (622)
                         ..+........|+..+.+|.+..+....-.....   .........+.....|.++..-+++. .|++.+..|..+.
T Consensus       147 ---v~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR---~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr  220 (323)
T 1wp5_A          147 ---VDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV---RAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKK  220 (323)
T ss_dssp             ---EEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS---SCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred             ---EEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC---CCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence               2333434455677778889888887654211111   00000001111112345554333444 6778888888888


Q ss_pred             EEcCC
Q psy2110         221 WDFLT  225 (622)
Q Consensus       221 wd~~~  225 (622)
                      .++..
T Consensus       221 ~~~~e  225 (323)
T 1wp5_A          221 MKLTE  225 (323)
T ss_dssp             EEGGG
T ss_pred             EEHHH
Confidence            77653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.86  E-value=22  Score=37.51  Aligned_cols=240  Identities=8%  Similarity=0.065  Sum_probs=117.5

Q ss_pred             eEEE-EcCCCCEEEEEeC-C----CcEEEEECCCCcEEEE-EeCCC--------CeEEEEEeCCCCeEEEEee-------
Q psy2110         240 CSIS-WSRNGYKIISAST-D----NNVCIWDVLTGECEQK-YRFPS--------PILKVQFHPRNDHMFLVCP-------  297 (622)
Q Consensus       240 ~~~~-~s~~~~~l~s~~~-d----~~i~iwd~~~~~~~~~-~~~~~--------~v~~~~~~~~~~~~~~~~~-------  297 (622)
                      ..+. ++|++++++.+-. .    ..++++|+.+++.+.. +....        ....++|. +++.++++..       
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBC
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcC
Confidence            3444 7888887665432 2    3699999999886531 11000        11344776 3444555421       


Q ss_pred             ---CCCcEEEEEecCCc--eeecccCCC-CceEEEEEeeCCCE-----EEEEe---cCCeEEEEeCCC--ccEEEEEecC
Q psy2110         298 ---MRHAAVLVDTDGDH--QIVPIDEDS-DLSIVASFDRRGQH-----VVTGN---SKGKVLVLSCPA--LELKASFKAS  361 (622)
Q Consensus       298 ---~~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~  361 (622)
                         ....++.|.+.+..  -...+.... ........++++++     +++.+   ....+++.+...  ++ +..+...
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  289 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP  289 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence               22457778776542  122222222 22334556667662     33333   123566666543  33 2333322


Q ss_pred             CCCEEEEEEcCCCCEEEEE----------eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         362 TTAIKSIEFARRGNCLLVN----------TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       362 ~~~i~~~~~s~~~~~l~~~----------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      ...  .+..+.++.+++..          ...+.|.+.++........  .....+.+-.+.....+..+.+..+ .+++
T Consensus       290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~  364 (711)
T 4hvt_A          290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTES--DKTSLKILFTPTANEVFNFISTTKD-RVFL  364 (711)
T ss_dssp             TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGG--GCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred             Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCccccccc--ccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence            221  22334455554432          1356788888874211000  0112222223333445567788765 4444


Q ss_pred             EeeCCCC--eEEEEECCCCe-eEEE-EecCCCCceeEEEECCCCC-EEEEEe--C--CcEEEeec
Q psy2110         432 AGSARQH--ALYIWEKSVGN-LVKI-LHGTKGELLLDVVWHPVRP-IIASIS--S--GVVSLWAQ  487 (622)
Q Consensus       432 ~~~~~d~--~i~iwd~~~~~-~~~~-~~~~~~~~v~~v~~sp~~~-~l~s~~--d--g~v~iw~~  487 (622)
                      +... ++  .|+++++.+++ .... +.-.....+..+..++++. ++++.+  .  +.+..+++
T Consensus       365 ~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~  428 (711)
T 4hvt_A          365 ATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK  428 (711)
T ss_dssp             EEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence            4443 44  47788876664 2333 3322212266677777765 444433  2  56666665

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=89.77  E-value=13  Score=34.63  Aligned_cols=194  Identities=14%  Similarity=0.092  Sum_probs=95.7

Q ss_pred             ccCCcEEEeccCCCeEEEEecccccee-----------------------cccCceEEeecCCceEEEeechhhhhcCCC
Q psy2110          10 DRRGQHVVTGNSKGKVLVLSCPALELK-----------------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKD   66 (622)
Q Consensus        10 spdg~~latg~~dg~v~vwd~~~~~~~-----------------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~   66 (622)
                      -|+..++++.+.+|.|+--........                       ......++..+..|.+.-............
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            356678888899999987765432111                       122345556666666655554432222112


Q ss_pred             CCCccchhhhhhccccceeEE-EEcC--CCCEEEEecCCCCeEEEEEcCCCce-------EEEEeccCcceeEEEEeecC
Q psy2110          67 GDPEPIQKLQDLVNKTMWKKC-CFSG--DGEYVCAGSARQHALYIWEKSVGNL-------VKILHGTKGELLLDVVEFDG  136 (622)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~-~~sp--~~~~l~~~~~~~~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~  136 (622)
                      ....++.....+.....+.++ ....  +..+|+..+.. |.++...+..-..       ...+.. .+.+         
T Consensus        85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l---------  153 (312)
T 1suu_A           85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS-GKIARFESTDFKAVKSRGVIVIKLND-KDFV---------  153 (312)
T ss_dssp             ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEEEGGGGCC----CEECBCCCT-TCCE---------
T ss_pred             CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC-CeEEEEEHHHhhccCCCcEEEEecCC-CCEE---------
Confidence            222222222233334444444 3321  45667777754 8888887643211       111121 1222         


Q ss_pred             ccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC
Q psy2110         137 ALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG  216 (622)
Q Consensus       137 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  216 (622)
                              ..+....+...++..+.+|.+..+....-.....-   ......-.+.....|..+..-.++..+++.+..|
T Consensus       154 --------v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~---~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G  222 (312)
T 1suu_A          154 --------TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRG---TQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENG  222 (312)
T ss_dssp             --------EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---BCCEECCCCCTTCCEEEEEECTTCSEEEEEETTS
T ss_pred             --------EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCC---CCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCC
Confidence                    24444444557888888999988877542111110   0000000111112355555545566778888899


Q ss_pred             eEEEEEcCC
Q psy2110         217 RIVLWDFLT  225 (622)
Q Consensus       217 ~i~iwd~~~  225 (622)
                      ..+...+..
T Consensus       223 ~~kr~~~~e  231 (312)
T 1suu_A          223 YGKRLNMSK  231 (312)
T ss_dssp             EEEEEEGGG
T ss_pred             ceEEEEHHH
Confidence            999888753

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=88.63  E-value=17  Score=34.64  Aligned_cols=150  Identities=9%  Similarity=0.117  Sum_probs=85.9

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC---------CcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecC-------
Q psy2110         246 RNGYKIISASTDNNVCIWDVLT---------GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDG-------  309 (622)
Q Consensus       246 ~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------  309 (622)
                      ++..++++.+.+|.|+--.+..         +.....++....+..+........++ ..+..|.++.+....       
T Consensus         5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~~r~   83 (370)
T 3l6v_A            5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEAGSN   83 (370)
T ss_dssp             CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCCTT
T ss_pred             cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCCCcc
Confidence            5667888888999888764321         22233334445566665555555444 445566655554321       


Q ss_pred             --Cceee---cccCCCCceEEE-EEe--eCCCEEEEEecCCeEEEEeCCCcc-------EEEEEecCCCCEEEEEEcCCC
Q psy2110         310 --DHQIV---PIDEDSDLSIVA-SFD--RRGQHVVTGNSKGKVLVLSCPALE-------LKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       310 --~~~~~---~~~~~~~~~~~~-~~~--~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~s~~~  374 (622)
                        +.++.   .+.. ...|..+ .+.  .++.+|+..+..|.++...+....       ....+.. ...+..+......
T Consensus        84 a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~  161 (370)
T 3l6v_A           84 ARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD  161 (370)
T ss_dssp             SCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred             cCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence              11111   2222 3344443 332  245689999999999988754321       1122322 3455555555566


Q ss_pred             CEEEEEeCCCcEEEEecccccccC
Q psy2110         375 NCLLVNTGDRLIRVYNHQEVLNAG  398 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~~~~~~~  398 (622)
                      ..++..+.+|.+..+........+
T Consensus       162 ~~i~l~T~~G~~irf~~~~v~~~g  185 (370)
T 3l6v_A          162 RDVLLFASNGKTVRFGESTVRSMG  185 (370)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             ceEEEEeCCCeEEEEEccccCccC
Confidence            678888999998888887654443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.08  E-value=22  Score=35.21  Aligned_cols=102  Identities=14%  Similarity=0.043  Sum_probs=57.8

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCeEEEEEcCCCc---eEEEec---------cCCcCeeEEEEcCC----CCEEEEEeC--
Q psy2110         196 LAVTCAFNKRGT-LLAVGCNDGRIVLWDFLTRG---IAKIIS---------AHMHPVCSISWSRN----GYKIISAST--  256 (622)
Q Consensus       196 ~v~~~~~s~~g~-~l~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~s~~----~~~l~s~~~--  256 (622)
                      ....++|.|+|. .|+++...|.|++++.....   .+..+.         ........|+|+|+    +...++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            357899999996 45566788999999753221   122221         11356789999996    433333221  


Q ss_pred             C----------CcEEEEECCC----------CcEEEEEe---CCCCeEEEEEeCCCCeEEEEee
Q psy2110         257 D----------NNVCIWDVLT----------GECEQKYR---FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       257 d----------~~i~iwd~~~----------~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                      +          ..|.-|.+..          .+.+..+.   .......|.|.||+..++.++.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          1344455432          12233322   2345678999999975444443

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=86.03  E-value=22  Score=33.04  Aligned_cols=192  Identities=8%  Similarity=0.109  Sum_probs=110.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceE---------EEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECC---CCcEE
Q psy2110         204 KRGTLLAVGCNDGRIVLWDFLTRGIA---------KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL---TGECE  271 (622)
Q Consensus       204 ~~g~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~---~~~~~  271 (622)
                      ++..++++.+.+|.|+-..+..-...         ..++.. ..+..+........++..+..|.++-+...   .....
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            34567888899999998876543211         112222 344444444455677777788876666543   11100


Q ss_pred             E---------EEeCCCCeEEEEEeCC--CCeEEEEeeCCCcEEEEEecC-------CceeecccCCCCceEEEEEeeCCC
Q psy2110         272 Q---------KYRFPSPILKVQFHPR--NDHMFLVCPMRHAAVLVDTDG-------DHQIVPIDEDSDLSIVASFDRRGQ  333 (622)
Q Consensus       272 ~---------~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  333 (622)
                      .         .+.....+.++...++  ....++..+..|.++...+..       +.....+.. .+.+..+.......
T Consensus        85 ~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence            0         1223345555544431  233466678888888877642       222333333 44455555545567


Q ss_pred             EEEEEecCCeEEEEeCCCc-------cEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeccccccc
Q psy2110         334 HVVTGNSKGKVLVLSCPAL-------ELKASFKA-STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNA  397 (622)
Q Consensus       334 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~  397 (622)
                      .++..+.+|.+..+....-       +-+..+.. ....|.++..-.++..+++.+..|..+...+.+....
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~  235 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISEL  235 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBC
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhccc
Confidence            7888899999888876431       11222221 2355666666556677888999999999998865443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.62  E-value=26  Score=33.66  Aligned_cols=215  Identities=10%  Similarity=0.035  Sum_probs=98.5

Q ss_pred             CeeEEEEcC-C-CCEEEEEeCCCcEEEEECCCCcEEEEEe--------------------CCCCeEEEEEeCCC-CeEEE
Q psy2110         238 PVCSISWSR-N-GYKIISASTDNNVCIWDVLTGECEQKYR--------------------FPSPILKVQFHPRN-DHMFL  294 (622)
Q Consensus       238 ~v~~~~~s~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~~~v~~~~~~~~~-~~~~~  294 (622)
                      .|.++++.| + ...|+.+...+.|...+ ..++.-..+.                    ....+.++.+.|.. ..+++
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            577889986 2 45566665555555443 2333222221                    11246788898854 33444


Q ss_pred             EeeCCCcEEEEEecCCceeecccC--C-----------CCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEec
Q psy2110         295 VCPMRHAAVLVDTDGDHQIVPIDE--D-----------SDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       295 ~~~~~~~i~~~d~~~~~~~~~~~~--~-----------~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      . ...+.+...+ ..+..-..+..  .           ...+..+.+++. ...|+++...+ |...+ ..++....+..
T Consensus       195 g-~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~  270 (394)
T 3b7f_A          195 G-MSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD  270 (394)
T ss_dssp             E-EETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred             E-ECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence            3 3333333222 11111111110  0           124778888885 35677766554 54444 22333333321


Q ss_pred             --CC---CCEEEEEEcCC-CCEEEEEeC-----------CCcEEEEecccccccCCCCCCCcceeeec-cccc-----ee
Q psy2110         361 --ST---TAIKSIEFARR-GNCLLVNTG-----------DRLIRVYNHQEVLNAGKDGDPEPIQKLQD-LVNK-----TM  417 (622)
Q Consensus       361 --~~---~~i~~~~~s~~-~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~  417 (622)
                        ..   ..+.+++++|. ...|.+++.           ++...+|....        .......+.. ....     ..
T Consensus       271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~D--------gG~tW~~~~~glp~~~~~~~~~  342 (394)
T 3b7f_A          271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRD--------AGESWQRQDRGLPTDQAWLTVK  342 (394)
T ss_dssp             GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESS--------TTSCCEEECBTSCCSSCCCCCC
T ss_pred             CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECC--------CCCCceECCCCCCCccccceEE
Confidence              11   34567888763 334444432           23334554331        0111121111 1110     01


Q ss_pred             eeeEEEcCC-CCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC
Q psy2110         418 WKKCCFSGD-GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH  468 (622)
Q Consensus       418 ~~~~~~spd-g~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s  468 (622)
                      ...++++|. ...|++++. ++.|+.- ...|+--..+..+-.. +.+|+|.
T Consensus       343 ~~~~~~~p~~~~~l~~g~~-~g~l~~S-~D~G~tW~~~~~~lp~-~~~v~~~  391 (394)
T 3b7f_A          343 RQAMTADAHAPVGVYFGTT-GGEIWAS-ADEGEHWQCIASHLPH-IYAVQSA  391 (394)
T ss_dssp             TBSEEECCSSSCCEEEECT-TSCEEEE-SSTTSBCEEEECSCSC-EEEEEEE
T ss_pred             EEEEEECCCCCCEEEEEeC-CCeEEEE-CCCCCCceEcccCCCC-eeEEEEe
Confidence            135788874 345666654 4545432 3445544555444333 7777764

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=84.83  E-value=23  Score=32.19  Aligned_cols=111  Identities=14%  Similarity=0.068  Sum_probs=68.5

Q ss_pred             CCCEEEEEecCCeEEEEeCCCcc------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALE------LKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE  404 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  404 (622)
                      +..+++..+.+|.++...+....      ....+.. ...+..+........++..+..|.+..+...+....+......
T Consensus        79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv  157 (276)
T 3no0_A           79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV  157 (276)
T ss_dssp             SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred             CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence            46789999999999988765432      1112222 3456666666666789999999999999887654443322222


Q ss_pred             cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECC
Q psy2110         405 PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~  446 (622)
                      ....+   .....+..+...+++.+++..+. .|.++...+.
T Consensus       158 ~~i~L---~~~d~vv~~~~~~~~~~ll~~T~-~G~~kr~~~~  195 (276)
T 3no0_A          158 QGIKL---EKNDETSGLRIWNGEPYLLVITA-KGRVKKISHE  195 (276)
T ss_dssp             ECCCC---CTTCCEEEEEEESSCSEEEEEET-TSCEEEEEGG
T ss_pred             EEEcc---CCCCEEEEEEEeCCCCEEEEEeC-CCcEEEeEHH
Confidence            22222   22344444444455667777776 7777777653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.34  E-value=20  Score=39.46  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.9

Q ss_pred             cceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccc
Q psy2110         142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  180 (622)
Q Consensus       142 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~  180 (622)
                      ..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            345677888888999999999999999999998776654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=81.97  E-value=5.2  Score=40.89  Aligned_cols=59  Identities=10%  Similarity=0.177  Sum_probs=46.4

Q ss_pred             eeEEEcCCCCeEEEeeCC-----------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEE
Q psy2110         419 KKCCFSGDGEYVCAGSAR-----------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASI  477 (622)
Q Consensus       419 ~~~~~spdg~~l~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~  477 (622)
                      -.|+|+|.|+++++-...           ...+.+.+..++++.+.+.++.+..++.++|+||++.|+..
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            357999999977765431           23567778888998888999887779999999999977654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	622
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (227), Expect = 5e-21
 Identities = 47/300 (15%), Positives = 104/300 (34%), Gaps = 13/300 (4%)

Query: 197 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS 255
            VT   F+   +++     D  I +WD+ T    + +  H   V  IS+  +G  + S S
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78

Query: 256 TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315
            D  + +WD    EC +        +       N    +         + +    + +  
Sbjct: 79  ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 138

Query: 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN 375
                +   +   ++ G  + + ++   V V      E KA  +     ++ I +A   +
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198

Query: 376 CLLVNTGDRLIRVYNHQE---VLNAGKDG-----DPEPIQKLQDLVNKTMW-KKCCFSGD 426
              ++         + +    +L+  +D      D      L  LV    W +   F   
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 258

Query: 427 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
           G+++ + +     L +W+      +K L+  +   +  + +H   P + + S    V +W
Sbjct: 259 GKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 1e-19
 Identities = 47/300 (15%), Positives = 89/300 (29%), Gaps = 32/300 (10%)

Query: 8   SFDRRGQHVVTGNSKGKVLVLSCPALE----LKASRGNCLLVNTGDRLIRVYNHQEVLNA 63
            F      +V+ +    + V      +    LK    +   ++       + +    +  
Sbjct: 24  IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83

Query: 64  GKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT 123
                           +           +G+++ + S R   + +WE   G  VK   G 
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVKTFTGH 142

Query: 124 KGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM 183
           +                         N+ GTL+A   ND  + +W   T+     +  H 
Sbjct: 143 REW-----------------VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185

Query: 184 HPEFDGALDCISL---------AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA 234
           H     +    S          + T    K G  L  G  D  I +WD  T      +  
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMF 293
           H + V  + +   G  I+S + D  + +WD     C +        +  + FH    ++ 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.7 bits (213), Expect = 3e-19
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 15/188 (7%)

Query: 80  NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALD 139
           ++   +    + DG  + + S  Q  + +W  +       L   +  +       + +  
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQT-VRVWVVATKECKAELREHRHVVECISWAPESSYS 200

Query: 140 CISL---AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL 196
            IS    + T    K G  L  G  D  I +WD  T      +  H +            
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG-------- 252

Query: 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST 256
                F+  G  +    +D  + +WD+  +   K ++AH H V S+ + +    +++ S 
Sbjct: 253 ---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 257 DNNVCIWD 264
           D  V +W+
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 46/358 (12%), Positives = 99/358 (27%), Gaps = 63/358 (17%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             F      + + S     + +W+   G+  + L G                     +V 
Sbjct: 23  VIFHPVFSVMVSAS-EDATIKVWDYETGDFERTLKGHTD------------------SVQ 63

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
                      +  +    +L         K+                    + +    G
Sbjct: 64  D----------ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
             +     D  I +W+  T    K  + H   V  +  +++G  I S S D  V +W V 
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173

Query: 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA 326
           T EC+ + R    +++            +                           S   
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATG----------------------SETK 211

Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI 386
              + G  +++G+    + +          +       ++ + F   G  +L    D+ +
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271

Query: 387 RVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444
           RV++++         +   ++ L    +        F     YV  GS     + +WE
Sbjct: 272 RVWDYK---------NKRCMKTLNAHEHFVT--SLDFHKTAPYVVTGSV-DQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.9 bits (211), Expect = 8e-19
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 26/183 (14%)

Query: 82  TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCI 141
           T             +    A   +  +W+   G   +   G + ++              
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN------------- 230

Query: 142 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCA 201
                  F   G   A G +D    L+D                      + I    + +
Sbjct: 231 ----AICFFPNGNAFATGSDDATCRLFDLRA---------DQELMTYSHDNIICGITSVS 277

Query: 202 FNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVC 261
           F+K G LL  G +D    +WD L    A +++ H + V  +  + +G  + + S D+ + 
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 262 IWD 264
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (210), Expect = 9e-19
 Identities = 41/294 (13%), Positives = 88/294 (29%), Gaps = 16/294 (5%)

Query: 197 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS 255
            +    +     LL     DG++++WD  T      I      V + +++ +G  +    
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 256 TDNNVCIWDVLTGECEQKYRFPSP---ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ 312
            DN   I+++ T E   +                  +D+  +         L D +   Q
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 313 IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFAR 372
                  +   +  S     +  V+G       +        + +F    + I +I F  
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 373 RGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 432
            GN     + D   R+++ +           + +                FS  G  + A
Sbjct: 237 NGNAFATGSDDATCRLFDLR---------ADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
           G        +W+    +   +L G     +  +        +A+ S    + +W
Sbjct: 288 GYD-DFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 1e-13
 Identities = 46/306 (15%), Positives = 90/306 (29%), Gaps = 28/306 (9%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             +  D   + + S     +     +  N V  +      ++                 T
Sbjct: 61  MHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVM-----------------T 102

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
           CA+   G  +A G  D    +++  TR     +S  +         C  L          
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-- 160

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
                   D    LWD  T       + H   V S+S + +    +S + D +  +WDV 
Sbjct: 161 ------SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214

Query: 267 TGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIV 325
            G C Q +    S I  + F P  +            +         +    ++    I 
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 326 A-SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDR 384
           + SF + G+ ++ G       V      +           +  +     G  +   + D 
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 385 LIRVYN 390
            ++++N
Sbjct: 335 FLKIWN 340

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.9 bits (182), Expect = 5e-15
 Identities = 33/275 (12%), Positives = 75/275 (27%), Gaps = 16/275 (5%)

Query: 197 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI--ISAHMHPVCSISWSRNGYKIIS 253
            ++C A+NK  T +A+  N+  + +++       ++  +  H   V  + W+ +  +I++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 254 ASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAV----LVDTDG 309
             TD N  +W +     +            +      +         + V      + + 
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 310 DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIE 369
           D  +    +    S V S D     V+              A   +   + + T   S  
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 370 FARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI---------QKLQDLVNKTMWKK 420
                     ++   +  V                 +                       
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 421 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH 455
             F  +   V AG      L+ ++ + G L     
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR 283

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 29/210 (13%), Positives = 51/210 (24%), Gaps = 29/210 (13%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             ++ D   +       H ++I+EKS    V++             E       ++    
Sbjct: 13  HAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQV------------HELKEHNGQVT---G 56

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
             +      +     D    +W                      L     A    +    
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVWTLKG---------RTWKPTLVILRINRAARCVRWAPNE 107

Query: 207 TLLAVGCNDGRIVLWDFLTRG----IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
              AVG     I +  F           I       V S+ W  N   + + S D    I
Sbjct: 108 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167

Query: 263 WDVLTGECEQKYRFPSPILKVQFHPRNDHM 292
           +     E E++        K+ F       
Sbjct: 168 FSAYIKEVEERPAPTPWGSKMPFGELMFES 197

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP---SPILKVQFHPRN 289
           S  + P+   +W+++  +I     ++ V I++    +  Q +        +  V + P +
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 290 DHMF 293
           + + 
Sbjct: 64  NRIV 67

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 27/194 (13%), Positives = 51/194 (26%), Gaps = 23/194 (11%)

Query: 80  NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALD 139
                     S    +V       +   +   S  + V +    K   +  +      L 
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247

Query: 140 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVT 199
                    F    +L+A G +D   VL+ + +          +      +   ++    
Sbjct: 248 A------VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT---- 296

Query: 200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNG----YKIISAS 255
                          D +         G   + S H + V  IS    G     +  +  
Sbjct: 297 -------ARERFQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTG 348

Query: 256 TDNNVCIWDVLTGE 269
            D  + IWDV + E
Sbjct: 349 MDGGMSIWDVRSLE 362

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 46/352 (13%), Positives = 99/352 (28%), Gaps = 80/352 (22%)

Query: 212 GCNDGRIVLWDFLTRGIAKI----ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
              +   +L++        +       H   VC + +S +G  + +   +    ++ V  
Sbjct: 34  KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD 92

Query: 268 GECEQKYRFPS-------------------PILKVQFHP--------------------- 287
           G    +    S                    I  V F P                     
Sbjct: 93  GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 152

Query: 288 --------------------RNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVAS 327
                                +    +         + D       + +  +  ++ VA 
Sbjct: 153 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 212

Query: 328 FDRRGQHVVTGNSKGKVLVLSCPALEL-------KASFKASTTAIKSIEFARRGNCLLVN 380
               G+++  G+    V V       L         S      ++ S+ F R G  ++  
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 381 TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMW-KKCCFSGDGEYVCAGSARQHA 439
           + DR ++++N Q   N      P         +    +      + + EY+ +GS +   
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRG 331

Query: 440 LYIWEKSVGNLVKILHGTKGELL-----LDVVWHPVRPIIASISS-GVVSLW 485
           +  W+K  GN + +L G +  ++           P   + A+ S      +W
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 4e-14
 Identities = 53/353 (15%), Positives = 104/353 (29%), Gaps = 77/353 (21%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
             FS DGEY+  G  +     ++  S G+LV  L                +     L + 
Sbjct: 68  VKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 147 C-AFNKRGTLLAVGCNDGRIVLWDFLTRGI------------------------------ 175
              F+  G  LA G  D  I +WD   R I                              
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

Query: 176 -AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLT-------RG 227
             +I                 +         G  +A G  D  + +WD  T         
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP 287
             +  + H   V S+ ++R+G  ++S S D +V +W++     +   + P+       + 
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 288 RNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVL 347
            +    L                                +  +  +++++G+    VL  
Sbjct: 306 GHKDFVLSV------------------------------ATTQNDEYILSGSKDRGVLFW 335

Query: 348 SCPALELKASFKASTTAIKSIEFARR------GNCLLVNTGDRLIRVYNHQEV 394
              +       +    ++ S+  A         N     +GD   R++ ++++
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (157), Expect = 7e-12
 Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 15/186 (8%)

Query: 38  SRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC 97
             G  +   + DR +RV++ +     G   +    +      +K       F+ DG+ V 
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSET----GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 98  AGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA 157
           +GS  +       ++  N         G   +  +     +         A  +    + 
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS------VATTQNDEYIL 324

Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
            G  D  ++ WD  +     ++  H       ++  +++A   +      + A G  D +
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGH-----RNSVISVAVANGSSLGPEYNVFATGSGDCK 379

Query: 218 IVLWDF 223
             +W +
Sbjct: 380 ARIWKY 385

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.5 bits (173), Expect = 5e-14
 Identities = 44/350 (12%), Positives = 93/350 (26%), Gaps = 21/350 (6%)

Query: 144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN 203
           +V          +  G +D  I ++D + +     +S H    +              + 
Sbjct: 14  SVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA-----------LKYA 62

Query: 204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI-ISASTDNNVCI 262
             G L++   +    V               +    C         K  ++ S DN + +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 263 WDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA-AVLVDTDGDHQIVPIDEDSD 321
           W +        +        V   P  +  F+     H  +V   +   + +V    D+ 
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT 381
           L +      +  ++++G++      +     +   S    TT              L   
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK------CCFSGDGEYVCAGSA 435
              +  +    + L +             D   K  +          F      + +GS 
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 302

Query: 436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLW 485
            Q    I+    G LV        + +  V +     + A    G   L 
Sbjct: 303 NQ--FNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 51/362 (14%), Positives = 104/362 (28%), Gaps = 25/362 (6%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVT 146
            C   +  YV  G+     + +++      +  L G  G +        G L   S   T
Sbjct: 17  TCLQFEDNYVITGA-DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 75

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
                          +G       L     K I   +    D  L    L       K  
Sbjct: 76  VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL------PKES 129

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
           ++   G      +++         +     H     + S +G  ++S S DN + +WDV 
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 267 TGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVA 326
             +C           ++     +              +   D ++  +        ++V 
Sbjct: 190 QMKCLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 247

Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLI 386
                 + +V+  + G +        +    F    T + +I      + +LV+  +   
Sbjct: 248 LLRLSDKFLVSAAADGSIRGWDAN--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 387 RVYNHQ--EVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE 444
            +YN +  ++++A    D + I  +             F G           Q  L I +
Sbjct: 306 NIYNLRSGKLVHANILKDADQIWSV------------NFKGKTLVAAVEKDGQSFLEILD 353

Query: 445 KS 446
            S
Sbjct: 354 FS 355

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 6e-14
 Identities = 49/375 (13%), Positives = 105/375 (28%), Gaps = 54/375 (14%)

Query: 109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 168
           W +      K+L G                      V       G  +  G +D  + +W
Sbjct: 1   WRRGELKSPKVLKGHDD------------------HVITCLQFCGNRIVSGSDDNTLKVW 42

Query: 169 DFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI 228
             +T    + +  H    +                                L  +     
Sbjct: 43  SAVTGKCLRTLVGHTGGVWS-----------SQMRDNII----ISGSTDRTLKVWNAETG 87

Query: 229 AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPR 288
             I + + H         +  +++S S D  + +WD+ TG+C            V+    
Sbjct: 88  ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA--VRCVQY 145

Query: 289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS 348
           +    +         + D + +  +  +   ++      FD  G HVV+G+    + V  
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWD 203

Query: 349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK 408
                   +     +    +E   + N L+    D  ++++          D       +
Sbjct: 204 VETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIW----------DIKTGQCLQ 251

Query: 409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL----HGTKGELLLD 464
                NK      C   +  +V   S     + +W+   G  ++ L     G  G ++  
Sbjct: 252 TLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 465 VVWHPVRPIIASISS 479
           +     + + A  S 
Sbjct: 311 IRASNTKLVCAVGSR 325

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 50/322 (15%), Positives = 92/322 (28%), Gaps = 23/322 (7%)

Query: 87  CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE---------LLLDVVEFDGA 137
            C    G  + +GS   + L +W    G  ++ L G  G          +++        
Sbjct: 21  TCLQFCGNRIVSGS-DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 79

Query: 138 LDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA 197
               +    C     G    V C           +R     +      +    L     A
Sbjct: 80  KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139

Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
           V C        +  G  D  + +WD  T      +  H + V S+ +  +G  ++S S D
Sbjct: 140 VRCVQYDGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLD 196

Query: 258 NNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID 317
            ++ +WDV TG C         +       +++ +          +     G        
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-----STTAIKSIEFAR 372
            +   S V         V+T +  G V +      E   +        S   +  I  + 
Sbjct: 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315

Query: 373 RGNCLLV----NTGDRLIRVYN 390
                 V     T +  + V +
Sbjct: 316 TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 40/175 (22%)

Query: 13  GQHVVTGNSKGKVLVLSCPALELK-------------ASRGNCLLVNTGDRLIRVYNHQE 59
           G HVV+G+    + V                        + N L+    D  ++++    
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW---- 242

Query: 60  VLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI 119
                 D       +     NK      C   +  +V   S     + +W+   G  ++ 
Sbjct: 243 ------DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKTGEFIRN 295

Query: 120 LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG----RIVLWDF 170
           L           +E  G+   +        +    + AVG  +G    ++++ DF
Sbjct: 296 L---------VTLESGGSGGVVW---RIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 40/293 (13%), Positives = 79/293 (26%), Gaps = 8/293 (2%)

Query: 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST 256
           AV       G  +   CN   +      +    +I + H H       S +GY   S   
Sbjct: 20  AVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 257 DNNVCIWDVLTGECEQKYRFP---SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI 313
             NV IWD        K   P    P+  + +   +  +  V   R     V        
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR 373
                    ++ +   +  +     +      V        K                  
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198

Query: 374 GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG 433
            +  L  +      +  +      G          L+++ +        +S DG  + + 
Sbjct: 199 PDGSLFASTGGDGTIVLYN--GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 434 SARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
           SA +  + IW  +   + K +          +     +  + SIS+ G ++  
Sbjct: 257 SADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 5e-08
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM-HPVCSISWSRNGYKIISASTDN 258
             ++  GT +A    D  I +W+  T  + K I          +        ++S S + 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 259 NVCIWD 264
            +   +
Sbjct: 304 FINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 10/76 (13%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
             ++  GT +A    D  I +W+  T  + K I      E                    
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----------DQQLGIIWTK 293

Query: 207 TLLAVGCNDGRIVLWD 222
             L     +G I   +
Sbjct: 294 QALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 26/306 (8%), Positives = 72/306 (23%), Gaps = 23/306 (7%)

Query: 89  FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC- 147
            +  G+ +   +    ++Y          +I                          T  
Sbjct: 25  NTPAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSH------------------QTTVA 64

Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
             +  G   A G   G + +WD          +  +       +   S +   A    G 
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124

Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
                         +    G A+ +++            +G    + +           T
Sbjct: 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 184

Query: 268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD-GDHQIVPIDEDSDLSIVA 326
                K+              +        + +      T   +   +     S      
Sbjct: 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244

Query: 327 SFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAST-TAIKSIEFARRGNCLLVNTGDRL 385
           ++   G  + + ++   + + +   L+++ +    T    + +        L+  + +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 386 IRVYNH 391
           I   N 
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 33/314 (10%), Positives = 64/314 (20%), Gaps = 37/314 (11%)

Query: 144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC-AF 202
           AV       G  +   CN   +      +    +I + H H              T    
Sbjct: 20  AVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQ------------TTVAKT 66

Query: 203 NKRGTLLAVGCNDGRI--VLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNV 260
           +  G   A G   G +        T  +   I     PV  ISW     +I +       
Sbjct: 67  SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 261 CIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS 320
                L                +                     V               
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR------- 373
           + +      R         S G    +                                 
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246

Query: 374 ---GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV 430
              G  +   + D+ I+++N    +   K       + +  +  +   ++       + +
Sbjct: 247 SPDGTKIASASADKTIKIWN----VATLK-----VEKTI-PVGTRIEDQQLGIIWTKQAL 296

Query: 431 CAGSARQHALYIWE 444
            + SA    +    
Sbjct: 297 VSISA-NGFINFVN 309

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.3 bits (157), Expect = 6e-12
 Identities = 21/195 (10%), Positives = 52/195 (26%), Gaps = 9/195 (4%)

Query: 79  VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGAL 138
            +    K    + +  +  A +    +  ++  S  +L             +VV     +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 223

Query: 139 DCISLAVT-CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA 197
             I  +        R          G   L D   R     +    +         I + 
Sbjct: 224 PLIPGSPNPTKLVPRSMTSE----AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 198 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD 257
                 +           G ++ +D  TR     ++   + +  +  S +   ++    D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDD 335

Query: 258 NNVCIWDVLTGECEQ 272
             +  + +   E E+
Sbjct: 336 GKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 10/101 (9%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 139 DCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAV 198
             I +       +           G ++ +D  TR + ++ +                  
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------------- 320

Query: 199 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV 239
               +     + V  +DG+I  +        + +     P+
Sbjct: 321 --RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 8e-12
 Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 26/324 (8%)

Query: 67  GDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGE 126
           G P   +++  L +  +      S    +V  G      + +W+ S       +      
Sbjct: 37  GIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGC--VKVWDISHPGNKSPV------ 88

Query: 127 LLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE 186
             LD +  D  +        C     G  L VG     + +WD                 
Sbjct: 89  SQLDCLNRDNYIRS------CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 187 FDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR 246
                         A +    +    C+DG I +WD   + + +    H      I  S 
Sbjct: 143 AC---------YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 247 NGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD 306
           +G K+ +   DN V  WD+  G   Q++ F S I  + + P  + + +     +  VL  
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

Query: 307 TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK 366
              D   + + E   LS+   F   G+  V+      +     P        K  ++++ 
Sbjct: 254 NKPDKYQLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVL 310

Query: 367 SIEFARRGNCLLVNTGDRLIRVYN 390
           S + +     ++  +GD+   VY 
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 200 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNN 259
             F   G        D  +  W     G +   S     V S   S +   I++ S D  
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329

Query: 260 VCIWDVL 266
             +++V+
Sbjct: 330 ATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 40/306 (13%), Positives = 76/306 (24%), Gaps = 28/306 (9%)

Query: 2   DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVL 61
           D  I     R  + + T N    V  ++        S     +   G   ++V++     
Sbjct: 31  DALIGPGIPRHARQINTLNHGEVVCAVTI-------SNPTRHVYTGGKGCVKVWDIS--- 80

Query: 62  NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--------------QHALY 107
                G+  P+ +L  L      + C    DG  +  G                   A  
Sbjct: 81  ---HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 108 IWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVL 167
                    + I   +K              D  +  +   F       +          
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 168 WDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG 227
                                   D  S   +  +   G  LAVG     +     + + 
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE-VLHVNKP 256

Query: 228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP 287
               +  H   V S+ ++  G   +S   DN +  W    G    + +  S +L      
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

Query: 288 RNDHMF 293
            + ++ 
Sbjct: 317 DDKYIV 322

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 39/303 (12%), Positives = 77/303 (25%), Gaps = 23/303 (7%)

Query: 144 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAF 202
            V     +     +  G   G + +WD    G    +S       D  +        C  
Sbjct: 53  VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS------CKL 105

Query: 203 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCI 262
              G  L VG     + +WD                    + + +    +  S  ++  I
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 263 WDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
                       +F            ++    +        +   D          D   
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225

Query: 323 SI-VASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT 381
            I    +   G+ +  G     V V        K       + + S++FA  G   +   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEV-LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 382 GDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALY 441
            D L+  +      +  +  +   +              C  S D +Y+  GS  +    
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLS------------CDISVDDKYIVTGSGDKK-AT 331

Query: 442 IWE 444
           ++E
Sbjct: 332 VYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 12/78 (15%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
             F   G        D  +  W     G +   S                 ++C  +   
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS-----------VLSCDISVDD 318

Query: 207 TLLAVGCNDGRIVLWDFL 224
             +  G  D +  +++ +
Sbjct: 319 KYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 8e-06
 Identities = 32/288 (11%), Positives = 72/288 (25%), Gaps = 41/288 (14%)

Query: 235 HMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP------SPILKVQFHPR 288
           H   VC+++ S     + +      V +WD+     +            + I   +  P 
Sbjct: 50  HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 289 NDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLS-IVASFDRRGQHVVTGNSKGKVLVL 347
              + +       ++        +I      S  +    +     +   +  S G + V 
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168

Query: 348 SCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ 407
                 L   F+  T     I+ +  G  L     D  +R ++ +E     +      I 
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228

Query: 408 KLQDLVNKTMWKKCCF-----------------------------SGDGEYVCAGSARQH 438
            L                                           +  G++  +     +
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-DN 287

Query: 439 ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASISS-GVVSLW 485
            L  W    G  +     +    +L          I + S     +++
Sbjct: 288 LLNAWRTPYGASIFQSKESSS--VLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 8/92 (8%), Positives = 27/92 (29%), Gaps = 19/92 (20%)

Query: 80  NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALD 139
           +++      F+  G++  +     + L  W    G  +     +                
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQSKESSS-------------- 308

Query: 140 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL 171
                ++C  +     +  G  D +  +++ +
Sbjct: 309 ----VLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 29/252 (11%), Positives = 64/252 (25%), Gaps = 27/252 (10%)

Query: 38  SRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK---CCFSGDGE 94
             G  +            ++       +        + + +    M ++      + DG 
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 95  YVCAGSARQHALYIWEKSVGNLVKILHGTKG--------ELLLDVVEFDGALDCISLAVT 146
              AG       Y  +   G     L             ++L          +   L   
Sbjct: 158 LYVAGPDI----YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
             F       A        +  D  T        A +   +           T   + + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY----------FTGLRSPKD 263

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL 266
                     R+  +D   R + K  +   H    +++ + G K+    T N++ +++  
Sbjct: 264 PNQIY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 267 TGECEQKYRFPS 278
           T E  +  + P 
Sbjct: 322 TLEKVKNIKLPG 333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 30/338 (8%), Positives = 70/338 (20%), Gaps = 44/338 (13%)

Query: 242 ISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SPILKVQFHPRNDHMFLVCPMR 299
            +       +I  +  NN+ + DV +    +    P           P N   +++    
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 300 HAAVLVDTDGDHQIVPIDEDSDLSI------------------VASFDRRGQHVVTGNSK 341
                +D D        +  S                            +  +       
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 342 GKVLVLSCPALELKASFKA--STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK 399
            ++ V S          +       +  +  A  G+  +       + V   +  +    
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 400 DGDPEPI----------QKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN 449
                                     +M        D +   A +   +     +   G 
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 450 LVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEY 509
                     EL    +  P  P         ++ +               K +      
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD----------LKQRKLIKA-ANL 290

Query: 510 DERESEFDISDEDKSVAQGSDDQDEELEIDVTSVEPVA 547
           D          +   +  G    D  +  +  ++E V 
Sbjct: 291 DHTYYCVAFDKKGDKLYLGGTFNDLAV-FNPDTLEKVK 327

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 29/311 (9%), Positives = 70/311 (22%), Gaps = 31/311 (9%)

Query: 8   SFDRRGQHVVTGNSKGKVLVLSCPALELKASR----------------GNCLLV-NTGDR 50
           +     ++++  N    + V+   +  +  S                      V N    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 51  LIRVYN---HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD---GEYVCAGSARQH 104
            I   +    +   +A     P  + +       +   K  ++              +  
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 105 ALYIWEKSVGNLVKILHGTKGELLLDVVEF--DGALDCISLAVTCAFNKRGTLLAVGCND 162
            L ++  + G   K +        + ++    DG+L      +     K G         
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182

Query: 163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWD 222
                       +      +  P      +   L     F       A        +  D
Sbjct: 183 NWNRKGYSAPDVL------YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236

Query: 223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK 282
             T        A +  +                  N +  +D+   +  +          
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYC 296

Query: 283 VQFHPRNDHMF 293
           V F  + D ++
Sbjct: 297 VAFDKKGDKLY 307

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.4 bits (143), Expect = 6e-10
 Identities = 33/197 (16%), Positives = 55/197 (27%), Gaps = 21/197 (10%)

Query: 162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW 221
            G+I L D  T  I  ++                       +  G  L V   DG++ + 
Sbjct: 41  AGQIALIDGSTYEIKTVLDTGYAVHI------------SRLSASGRYLFVIGRDGKVNMI 88

Query: 222 DFLT---RGIAKII--SAHMHPVCSISWSRNG-YKIISASTDNNVCIWDVLTGECEQKYR 275
           D        +A+I   S       S        Y I  A       I D  T E ++   
Sbjct: 89  DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148

Query: 276 FPSPILKVQ-FHPRNDHMFLVC--PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRG 332
                   Q +HP      ++         V V   G   +V   + ++L        R 
Sbjct: 149 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208

Query: 333 QHVVTGNSKGKVLVLSC 349
            H    +   +  + + 
Sbjct: 209 LHDGGLDGSHRYFITAA 225

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 7e-10
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG-IAKIISAHMHPVC 240
               + +      +            L+A G  D  I ++       I K ++AH   V 
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 241 SISWSRNGYKIISASTDNNVCIWDVL 266
           ++ W      ++S+  D  +  W+V+
Sbjct: 263 NLLWETPS-TLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 36/291 (12%), Positives = 75/291 (25%), Gaps = 23/291 (7%)

Query: 197 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS 255
            +T    N     L  G  DGRI+ W   +         H + + S+  S+       + 
Sbjct: 15  GITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISW 65

Query: 256 TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVP 315
            D              Q     +          ND   L+       ++     +     
Sbjct: 66  DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125

Query: 316 IDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGN 375
           +    +   V   +     V   +       L  P                 I  +    
Sbjct: 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP----------LRAKPSYISISPSET 175

Query: 376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA 435
            +        I +Y+ Q              +                  + + V  GS 
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 436 RQHALYIWE-KSVGNLVKILHGTKGELLLDVVWHPVRPIIASISSGVVSLW 485
               ++I+  K    ++K L+  K  +  +++W     +++S +   +  W
Sbjct: 236 -DTNIFIYSVKRPMKIIKALNAHKDGVN-NLLWETPSTLVSSGADACIKRW 284

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 46/287 (16%)

Query: 142 SLAVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTC 200
           S  V C  ++     +  G  D  I +WD  T    +I++ H         D   +    
Sbjct: 15  SKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72

Query: 201 AFNKRGTLLA---------------------------VGCNDGRIVLWDF-LTRGIAKII 232
           + +                                      D  I +WD      I    
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM 292
               H         +   I+SAS D  + +W+  T E             +      D +
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQYRDRL 190

Query: 293 FLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV------ 346
            +     +   L D +    +  ++   +  +V       + +V+G   GK+ V      
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 347 ---LSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN 390
               +        +    +  +  ++F      ++ ++ D  I +++
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 36/277 (12%), Positives = 82/277 (29%), Gaps = 23/277 (8%)

Query: 88  CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALD-------- 139
           C   D + + +G  R + + IW+K+     +IL G  G +L    +    +         
Sbjct: 20  CLQYDDQKIVSGL-RDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR 78

Query: 140 --CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALD-CISL 196
              ++               +       ++          +       +           
Sbjct: 79  VWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 138

Query: 197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST 256
           A     +     +     D  I +W+  T    + ++ H   +  + +      ++S S+
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS 196

Query: 257 DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRN-------DHMFLVCPMRHAAVLVDTDG 309
           DN + +WD+  G C +       +++              D    V  +  A       G
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 310 DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346
              +  + E S       FD     +V+ +    +L+
Sbjct: 257 TLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 40/301 (13%), Positives = 86/301 (28%), Gaps = 33/301 (10%)

Query: 195 SLAVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIIS 253
           S  V C  ++     +  G  D  I +WD  T    +I++ H   V  + +        S
Sbjct: 15  SKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72

Query: 254 ASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI 313
           + +   V   +         +   + +     +           +    +   TD   + 
Sbjct: 73  SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 314 VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR 373
             +        V  FD +     +G+    + V +    E   +       I  +++  R
Sbjct: 133 -VLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCEFVRTLNGHKRGIACLQY--R 187

Query: 374 GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAG 433
              ++  + D  IR++            D E    L+  V +   +              
Sbjct: 188 DRLVVSGSSDNTIRLW------------DIECGACLR--VLEGHEELVRCIRFDNKRIVS 233

Query: 434 SARQHALYIWEKSVGNLVKILHGTKGELLL--------DVVWHPVRPIIASISS-GVVSL 484
            A    + +W+       +   GT     L         + +   +  I S S    + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILI 291

Query: 485 W 485
           W
Sbjct: 292 W 292

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV----LTGECEQKYRFPSPILKV 283
           I +I  A    +  I    +   ++  S D ++ ++         +  Q  R+  P+L  
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 284 QFHPRNDHMFLVCPMRH 300
            F    D    V  ++ 
Sbjct: 63  NFIDNTDLQIYVGTVQG 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 147 CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRG 206
              +   + L VG N+ ++  +                           +       K  
Sbjct: 154 FTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL-------KYQIRDVALLPKEQ 206

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIIS---------------AHMHPVCSISWSRNGYKI 251
              A    DGR+ +  F  +G     S                  +PV SI +S     +
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266

Query: 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC 296
            +A +D  +  W++ T +  + +   +    V+    ++ + L  
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 30/309 (9%), Positives = 84/309 (27%), Gaps = 22/309 (7%)

Query: 197 AVTC-AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA---HMHPVCSISWSRN-GYKI 251
            ++        +LL +   DG + ++ F  +     +     + HP+   ++  N   +I
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH 311
              +    +   D++     Q        L +    +     L+       + V    ++
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 312 QI-------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA 364
                    +  +     + + + D     ++ G +  +V     P  E        +  
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 365 ----IKSIEFARRGNCLLVNTGDRLIRVY---NHQEVLNAGKDGDPEPIQKLQDLVNKTM 417
                      +       ++ D  + V    +  +  N+ K       +      N   
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 418 WKKC-CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIAS 476
                 FS   +++    +    +  W       +K       + ++ +        +A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311

Query: 477 ISSGVVSLW 485
            S       
Sbjct: 312 -SDDTFKTN 319

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 31/341 (9%), Positives = 73/341 (21%), Gaps = 11/341 (3%)

Query: 153 GTLLAVGCNDGRIVLWDFLTR----GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTL 208
            +       DG + +WD           K  S  +H    G      L           L
Sbjct: 24  NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELCL 81

Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVL-T 267
           +A     G ++ +        K +      +      ++ +  +     N+  +   L  
Sbjct: 82  VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141

Query: 268 GECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVAS 327
            + +                     +         V            +D      ++A+
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIAT 200

Query: 328 FDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIR 387
               G   ++  S  + L        +  +  +  +   S + +        N+   +  
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260

Query: 388 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSV 447
                              Q        + W       D       +     L  W+   
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320

Query: 448 GNLVKILHGTKGE---LLLDVVWHPVRPIIASISSGVVSLW 485
              +  L+    +       +        +A      V   
Sbjct: 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 41/338 (12%), Positives = 89/338 (26%), Gaps = 35/338 (10%)

Query: 19  GNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYN----HQEVLNAGKDGDPEPIQK 74
            +  G   V    A+E  A     +   +    +  Y      +      +  D      
Sbjct: 58  VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117

Query: 75  LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEF 134
            +       W           + A   +            +    L       L      
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 135 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCI 194
           +  +     A +   ++RG L+A G N+G + + +      + +   +        ++  
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL-----STLRPLYNFESQHSMINNS 231

Query: 195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDF----------------LTRGIAKIISAHMHP 238
           +   +  F+ +G+LLA+  +                          +   +    AH   
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-----FPSPILKVQFHPRNDHMF 293
           V S+S++ +G  + SA  D  +  WDV T E                  +     +    
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSL 350

Query: 294 LVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR 331
               +     L       +     + ++       DR 
Sbjct: 351 AEPGVFDVKFL---KKGWRSGMGADLNESLCCVCLDRS 385

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 4/123 (3%)

Query: 229 AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF--PSPILKVQFH 286
           A    AH   + S+S   +    +S S D  + +WD    + E          + K   H
Sbjct: 7   ANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 287 PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV 346
             +    +        ++  T     ++      +         +   + +   K     
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 347 LSC 349
           L  
Sbjct: 125 LKW 127

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-- 239
                 +   + +   +           A    D  I +WD  T    +  +     +  
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298

Query: 240 --CSISWSRNGYKIISASTDNNVCIWDV 265
               +  + NG  IIS S D  +  +++
Sbjct: 299 QQVGVVATGNGR-IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 32/314 (10%), Positives = 76/314 (24%), Gaps = 24/314 (7%)

Query: 88  CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
            +      +     +   +   +     +  +            V+F G    +   V  
Sbjct: 24  SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV------------VQFTGHGSSVVTTVKF 71

Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           +  K    L  G   G++++W +     +  +  ++  EF      IS  ++  F  R  
Sbjct: 72  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRL 130

Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLT 267
            +     D   V   + +      +S H   + +    ++         D+   ++    
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190

Query: 268 GECEQKYR--------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDED 319
                           F   +                           +    I    E 
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250

Query: 320 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCL 377
               I A      Q   T  +   + V      +    +         + +     GN  
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310

Query: 378 LVNTG-DRLIRVYN 390
           +++   D  +  Y 
Sbjct: 311 IISLSLDGTLNFYE 324

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 37/306 (12%), Positives = 73/306 (23%), Gaps = 35/306 (11%)

Query: 88  CFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC 147
             +  G    A   +  +L   +   G  +  +  +  E            + +      
Sbjct: 40  MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE------------ERVKSLFGA 87

Query: 148 AFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT 207
           A +  G  LA+  +  R+ L  F  +     +          A +        A+ + G+
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY------------------ 249
            L     D  ++  +  T    K I +      +       +                  
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 250 ---KIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVD 306
                   +    +   D+ TGE   +      +                         D
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLES-FD 266

Query: 307 TDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIK 366
            + +  I  +        V      G  V  G + G +       LE K        A  
Sbjct: 267 LEKNASIKRVPLPHSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASM 325

Query: 367 SIEFAR 372
           S+   R
Sbjct: 326 SLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 26/242 (10%), Positives = 58/242 (23%), Gaps = 16/242 (6%)

Query: 41  NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGS 100
             L +      + + + +         D E + + +            ++ DG  +    
Sbjct: 94  KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

Query: 101 ARQHALYIWEKSVGNLVKILHGTKGELLLDVVEF---DGALDCISLAVTCAFNKRGTLLA 157
              H +     ++     I            V           +         K      
Sbjct: 154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213

Query: 158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR 217
                  ++  D  T  +A      M   +           + A N   T          
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFY----------FSTAVNPAKTRAF--GAYNV 261

Query: 218 IVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP 277
           +  +D       K +    H   S++ S +G  +       ++  +D  T E + +   P
Sbjct: 262 LESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320

Query: 278 SP 279
             
Sbjct: 321 GN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 18/179 (10%), Positives = 44/179 (24%), Gaps = 21/179 (11%)

Query: 75  LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW---EKSVGNLVKILHGTKGELLLDV 131
           ++D   ++   +     D   V         +       +   +         G L +D+
Sbjct: 167 VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226

Query: 132 ----VEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEF 187
               +             + A N   T          +  +D       K +        
Sbjct: 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNASIKRVPLPHSYY- 283

Query: 188 DGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSR 246
                      +   +  G+ + +G   G +  +D  T      +    +   S++  R
Sbjct: 284 -----------SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 32/318 (10%), Positives = 79/318 (24%), Gaps = 27/318 (8%)

Query: 251 IISASTDNNVCIWDVLTGECEQKYRFPSP---ILKVQFHPRNDHMFLVCPMRHAAVLVDT 307
           I++ +  + + + D      ++           +     P     +       + V +D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 308 DGDHQIVPIDEDSDLSIV-----ASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--A 360
                +  ID  +    V     A+    G+ +    S  ++ +        + +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 361 STTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK 420
           + +  K+ E  R+   L        +        +   + G     + +Q         +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQS-----WEAE 178

Query: 421 CCFSGDGEYVCAGSARQHALYIW---EKSVGNLVKILHGTKGELLLD--------VVWHP 469
                D   V         +       +   +         G L +D             
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 470 VRPIIASISSGVVSLWAQNQVENWSAFAPDFKELDENVEYDERESEFDISDEDKSVAQGS 529
           +     S +       A        +F  +     + V         ++S +  +V  G 
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG 298

Query: 530 DDQDEELEIDVTSVEPVA 547
              D     D  ++E   
Sbjct: 299 ALGDLAA-YDAETLEKKG 315

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 30/301 (9%), Positives = 72/301 (23%), Gaps = 28/301 (9%)

Query: 40  GNCLLV-NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA 98
           G            +   +    L  G+      +   ++ V          S DG+ +  
Sbjct: 45  GRIAYATVNKSESLVKID----LVTGETLGRIDLSTPEERVK--SLFGAALSPDGKTLAI 98

Query: 99  GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAV 158
             +         +     V +                            A+ + G+ L  
Sbjct: 99  YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML-------AWARDGSKLYG 151

Query: 159 GCNDGRIVLWDFLTRGIAKIISAHMHPEF----------DGALDCISLAVTCAFNKRGTL 208
              D  ++  +  T    K I +     +                +         K    
Sbjct: 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211

Query: 209 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG 268
                    ++  D  T G   +    +  V   S + N  K  +    N +  +D+   
Sbjct: 212 ADPTAYRTGLLTMDLET-GEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270

Query: 269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI--VPIDEDSDLSIVA 326
              ++   P     V        ++ +          D +   +   V +  ++ +S+ +
Sbjct: 271 ASIKRVPLPHSYYSVNVSTDGSTVW-LGGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329

Query: 327 S 327
            
Sbjct: 330 V 330

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 4e-08
 Identities = 33/292 (11%), Positives = 83/292 (28%), Gaps = 34/292 (11%)

Query: 228 IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQF 285
           I ++   H   + ++S S +G  + SA  + ++  WD+ TG   + +     + I  ++ 
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 286 HPRNDHMFLVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKV 344
             + D   +        V     G D      ++ S   +  +    G   V    K   
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 345 LVLSCPALELKASFKASTTAIKSIEFA-----------------------------RRGN 375
           +       E+  S+ +S  A+ + +                                   
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 376 CLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA 435
            +  +     +   +    +      +   +         T    C          A  +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 436 RQHALYIWEKSVGNLVKIL--HGTKGELLLDVVWHPVRPIIASISSGVVSLW 485
             +++ +W  +  +   I+         +  V+W     I+++     +  W
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 210 AVGCNDGRIVLWDFLTRGIAKIISAHMHP--VCSISWSRNGYKIISASTDNNVCIWDV 265
           A G  D  +++W+        II    H     +     N   I+SA  D+N+  W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 34/335 (10%), Positives = 77/335 (22%), Gaps = 44/335 (13%)

Query: 113 VGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC-AFNKRGTLLAVGCNDGRIVLWDFL 171
           +G++ ++ +G                     A+T  + +  G  L     +G I  WD  
Sbjct: 1   LGSIDQVRYGHNK------------------AITALSSSADGKTLFSADAEGHINSWDIS 42

Query: 172 T-RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI-A 229
           T          H               +T         L     D  + +      G+ +
Sbjct: 43  TGISNRVFPDVHATM------------ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 90

Query: 230 KIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRN 289
               A+      +  + +    I+ +               E    + S  + +    + 
Sbjct: 91  SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF 150

Query: 290 DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC 349
             +       H   L           +      S+  S +         + K     ++ 
Sbjct: 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210

Query: 350 PALELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQK 408
                  +     TA  +       N  L     D  + V+N            P     
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN---------KPSDHPI 261

Query: 409 LQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIW 443
           +    +           +   + +     + +  W
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSN-IKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 9/66 (13%)

Query: 157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG 216
           A G  D  +++W+        II    H            +V        T +     D 
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS---------SVNSVIWLNETTIVSAGQDS 290

Query: 217 RIVLWD 222
            I  W+
Sbjct: 291 NIKFWN 296

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 14/147 (9%)

Query: 140 CISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVT 199
              L    A++++   L      G+I   D  +     + +     E + A         
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252

Query: 200 -----------CAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNG 248
                           +            +V+ D  T           H + SI+ S++ 
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDE 311

Query: 249 --YKIISASTDNNVCIWDVLTGECEQK 273
                  ++ D  + I D  +GE  + 
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 27/314 (8%), Positives = 69/314 (21%), Gaps = 39/314 (12%)

Query: 207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST---------- 256
              A      +  + D     +  +I     P  +   + +G  I  AST          
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGER 76

Query: 257 DNNVCIWDVLTGECEQKYRFPSPILK--------VQFHPRNDHMFLVCPMRHAAVLVDTD 308
            + V ++D +T         P                 P    +         AV V   
Sbjct: 77  TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 136

Query: 309 GDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS----CPALELKASFKASTTA 364
                  + +  D   +         +   +     +             +         
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 365 IKSIEFARRGNCLLVNTGDRLIRVYNHQE-VLNAGKDGDPEPIQKLQDLVNKTMWKKCCF 423
           I    ++++   L+  T    I   +            +     +  D      W++  +
Sbjct: 197 INHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256

Query: 424 SGDGEYVCAGSARQHA---------LYIWEKSVGNLVKILHGTKGELLLDVVWHP---VR 471
               + +     ++           + + +   G  +       G  +  +         
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPL 314

Query: 472 PIIASISSGVVSLW 485
               S     + + 
Sbjct: 315 LYALSTGDKTLYIH 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 18/179 (10%)

Query: 150 NKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL 209
           +          + G+I L D  ++ I K+I                       +  G  L
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH------------ISRMSASGRYL 76

Query: 210 AVGCNDGRIVLWDFLTRGIAKI-----ISAHMHPVCSISWSRNG-YKIISASTDNNVCIW 263
            V   D RI + D   +   K+              S        Y I  A       I 
Sbjct: 77  LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136

Query: 264 DVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL 322
           D  T E +Q        +  Q +     +  +         +    +   V +    D+
Sbjct: 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 195

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 27/295 (9%), Positives = 77/295 (26%), Gaps = 23/295 (7%)

Query: 161 NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGRIV 219
               I + D  +  +   I    +P            +    +  GT + V   +   + 
Sbjct: 10  ESDNISVIDVTSNKVTATIPVGSNP------------MGAVISPDGTKVYVANAHSNDVS 57

Query: 220 LWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSP 279
           + D  T  +   + A   P             ++    + + + D  +       +    
Sbjct: 58  IIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS 117

Query: 280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN 339
            L +   P    +++         +++T     I  +        +A      +  V   
Sbjct: 118 PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF 177

Query: 340 SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK 399
               + V+      +  + K                     T   +  V  +   ++   
Sbjct: 178 DSMSISVIDTVTNSVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMID 230

Query: 400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL 454
            G  +   ++   V          + DG+ V    +  + + + + +   +   +
Sbjct: 231 TGTNKITARIP--VGPDPAG-IAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 221 WDFLTRGIAKIISAHMHPVCSISWSRNGYKI-ISASTDNNVCIWDVLTGECEQKYRFPSP 279
            D  T  I   I     P   I+ + +G K+ ++ S  N V + D  T            
Sbjct: 229 IDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT------ 281

Query: 280 ILKVQFHPRNDHMFL 294
            + V  +P     F+
Sbjct: 282 -MAVGKNPYASGQFI 295

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 13/137 (9%), Positives = 33/137 (24%), Gaps = 13/137 (9%)

Query: 145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNK 204
                N  G L+    +             +   I  +               +  A  K
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV-AKLK 273

Query: 205 RGTLLAVGCNDG---------RIVLWDFLTRGIAKIISAHMHPVCSISWSRNG--YKIIS 253
               + +   +                      +  IS   H   +I  +++G      +
Sbjct: 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYAN 332

Query: 254 ASTDNNVCIWDVLTGEC 270
           ++    + I+D  + + 
Sbjct: 333 SAGTEVLDIYDAASDQD 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	622
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.73
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.7
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.44
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.4
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.0
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.54
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.52
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.09
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.06
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.04
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.04
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.98
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.96
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.7
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.5
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.47
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.29
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.64
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.14
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.0
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.9
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.83
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.39
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.03
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.82
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.61
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.03
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.03
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	85.41
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.74

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-40  Score=320.50  Aligned_cols=290  Identities=17%  Similarity=0.295  Sum_probs=253.0

Q ss_pred             CccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce-----EEEEeccCcceeEEEEeecCccccccc
Q psy2110          69 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL-----VKILHGTKGELLLDVVEFDGALDCISL  143 (622)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~  143 (622)
                      +...+.+..+.|...|.|++|||+|++|++|+ + |.|+|||+.++..     .....+|.+.|                
T Consensus        39 p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~-d-g~V~iWd~~~~~~~~~~~~~~~~~h~~~I----------------  100 (337)
T d1gxra_          39 PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCLNRDNYI----------------  100 (337)
T ss_dssp             CSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECSCTTSBE----------------
T ss_pred             CCCceEEEECCCCCcEEEEEECCCCCEEEEEE-C-CEEEEEEccCCcccceeEEeeecCCCCcE----------------
Confidence            44555566666778889999999999999997 4 8999999976532     22344677777                


Q ss_pred             eeEEEEcCCCCEEEEeeCCCcEEEEecCCcc--cccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEE
Q psy2110         144 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       144 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                       .+++|+|++++|++|+.||.|++||+....  ....+..+.           ..+.+++|+|++.++++++.++.|++|
T Consensus       101 -~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_         101 -RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----------PACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             -EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----------SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -EEEEEcCCCCEEEEeeccccccccccccccccccccccccc-----------ccccccccccccccccccccccccccc
Confidence             599999999999999999999999987543  333333332           347899999999999999999999999


Q ss_pred             EcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCc
Q psy2110         222 DFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHA  301 (622)
Q Consensus       222 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (622)
                      ++.+++.......|...|.+++|++++..+++++.|+.+++||+++++.+..+.+...|.+++|+|++. ++++++.++.
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~  247 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSN  247 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEccccc-ccceeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887 5778899999


Q ss_pred             EEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q psy2110         302 AVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNT  381 (622)
Q Consensus       302 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  381 (622)
                      +++||++..... ....|...+.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++
T Consensus       248 i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         248 VEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEE
T ss_pred             cccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEe
Confidence            999999877654 456778889999999999999999999999999999999887765 678999999999999999999


Q ss_pred             CCCcEEEEec
Q psy2110         382 GDRLIRVYNH  391 (622)
Q Consensus       382 ~d~~i~i~d~  391 (622)
                      .|+.|+|||+
T Consensus       326 ~D~~I~vWdl  335 (337)
T d1gxra_         326 GDKKATVYEV  335 (337)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-39  Score=313.77  Aligned_cols=318  Identities=15%  Similarity=0.205  Sum_probs=247.3

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEE-cCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCc
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWE-KSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  164 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~  164 (622)
                      +...+++|+........+ .+..=. ....+.++.+ .|...|                 ++++|+|+|++||+|+ ||.
T Consensus        14 ~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~-~H~~~V-----------------~~v~fs~~g~~latg~-dg~   73 (337)
T d1gxra_          14 SFHVTADGQMQPVPFPPD-ALIGPGIPRHARQINTL-NHGEVV-----------------CAVTISNPTRHVYTGG-KGC   73 (337)
T ss_dssp             EEEECSSSCEEECCCCTT-SSSSTTCCSEEEEEEEE-CCSSCC-----------------CEEEECSSSSEEEEEC-BSE
T ss_pred             cccCCCCCCEEeeccCCc-ceecCCCCCCceEEEEC-CCCCcE-----------------EEEEECCCCCEEEEEE-CCE
Confidence            466777777665544332 211000 1122344444 687777                 5999999999999997 799


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCC--ceEEEeccCCcCeeEE
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTR--GIAKIISAHMHPVCSI  242 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~  242 (622)
                      |+|||+.++.....+......      .....|.+++|+|+|++|++++.|+.|++||+...  +....+..|...+..+
T Consensus        74 V~iWd~~~~~~~~~~~~~~~~------~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  147 (337)
T d1gxra_          74 VKVWDISHPGNKSPVSQLDCL------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  147 (337)
T ss_dssp             EEEEETTSTTCCSCSEEEECS------CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred             EEEEEccCCcccceeEEeeec------CCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccc
Confidence            999999876544333221111      11146899999999999999999999999998744  4567788899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCc
Q psy2110         243 SWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDL  322 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  322 (622)
                      +|+|++.++++++.|+.|++|++.++++.....                                          .|...
T Consensus       148 ~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~------------------------------------------~~~~~  185 (337)
T d1gxra_         148 AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ------------------------------------------GHTDG  185 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC------------------------------------------CCSSC
T ss_pred             ccccccccccccccccccccccccccccccccc------------------------------------------ccccc
Confidence            999999999999999999999998876654433                                          12334


Q ss_pred             eEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCC
Q psy2110         323 SIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGD  402 (622)
Q Consensus       323 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  402 (622)
                      +.+++|++++..+++++.++.+++||+++++.+..+. +...|.+++|+|++++|++++.|+.|++||++.         
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~---------  255 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK---------  255 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---------
T ss_pred             cccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccc---------
Confidence            5556666777788888899999999999988877664 678999999999999999999999999999983         


Q ss_pred             CCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCc
Q psy2110         403 PEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGV  481 (622)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~  481 (622)
                      ...   +....+...+.+++|+|+|++|++++. |+.|++||+.+++.+..+. |.+. |++++|+|++++|++++ ||+
T Consensus       256 ~~~---~~~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~~-~~~~-v~~~~~s~d~~~l~t~s~D~~  329 (337)
T d1gxra_         256 PDK---YQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQSK-ESSS-VLSCDISVDDKYIVTGSGDKK  329 (337)
T ss_dssp             SCE---EEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEE-CSSC-EEEEEECTTSCEEEEEETTSC
T ss_pred             ccc---ccccccccccceEEECCCCCEEEEEeC-CCeEEEEECCCCCEEEEcc-CCCC-EEEEEEeCCCCEEEEEeCCCe
Confidence            121   122234456788999999999999997 8999999999999887765 4444 99999999999999999 999


Q ss_pred             EEEeec
Q psy2110         482 VSLWAQ  487 (622)
Q Consensus       482 v~iw~~  487 (622)
                      |+||++
T Consensus       330 I~vWdl  335 (337)
T d1gxra_         330 ATVYEV  335 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=318.51  Aligned_cols=324  Identities=21%  Similarity=0.381  Sum_probs=247.3

Q ss_pred             CCeEEEEEcCCCceE----EEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccc
Q psy2110         103 QHALYIWEKSVGNLV----KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI  178 (622)
Q Consensus       103 ~~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~  178 (622)
                      ++.+.+|+....+..    ....+|.+.|                 ++++|+|||++||+|+ |+.|+||++.+++.+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V-----------------~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~   98 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVV-----------------CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVAR   98 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCC-----------------CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEE
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcE-----------------EEEEECCCCCEEEEEe-CCeEEEEEecccceEee
Confidence            367889987655432    2334688887                 5999999999999987 89999999999888777


Q ss_pred             cccccCCCcc-------cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEE
Q psy2110         179 ISAHMHPEFD-------GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKI  251 (622)
Q Consensus       179 ~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  251 (622)
                      +..+......       ........|.+++|+|+|++|++|+.||.|++|+...++.+..+.+|...|.+++|++++..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_          99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             ECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             ecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccc
Confidence            6554322110       011122458999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC
Q psy2110         252 ISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR  331 (622)
Q Consensus       252 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  331 (622)
                      ++++.++.+++||..+...............+.+++                                          ++
T Consensus       179 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~  216 (388)
T d1erja_         179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP------------------------------------------GD  216 (388)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS------------------------------------------TT
T ss_pred             cccccceeeeeeeccccccccccccccccccccccC------------------------------------------CC
Confidence            999999999999999887776665554444444433                                          34


Q ss_pred             CCEEEEEecCCeEEEEeCCCccEEEEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCC
Q psy2110         332 GQHVVTGNSKGKVLVLSCPALELKASFK-------ASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPE  404 (622)
Q Consensus       332 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  404 (622)
                      +++|++++.||.|++|+..++.....+.       +|...|++++|+|++++|++++.|+.|++||+.............
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence            5667777777777777777766555443       578899999999999999999999999999998533221111111


Q ss_pred             -cceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEE------CCCCCEEEEE
Q psy2110         405 -PIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVW------HPVRPIIASI  477 (622)
Q Consensus       405 -~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~------sp~~~~l~s~  477 (622)
                       .........+...+.+++|+|+|++|++|+. ||.|++||+.+++++..+.+|.+. |+++++      +|++++|+++
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~l~~H~~~-V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNS-VISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEEECCSSC-EEEEEECSSCTTCTTCEEEEEE
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEEeCCCCC-EEEEEEecCcccCCCCCEEEEE
Confidence             1111122233456788999999999999997 999999999999999999999987 998874      6789999999


Q ss_pred             e-CCcEEEeecC
Q psy2110         478 S-SGVVSLWAQN  488 (622)
Q Consensus       478 ~-dg~v~iw~~~  488 (622)
                      + ||+|+||+++
T Consensus       375 s~Dg~I~iW~~~  386 (388)
T d1erja_         375 SGDCKARIWKYK  386 (388)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCEEEEEeee
Confidence            9 9999999973

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-38  Score=307.51  Aligned_cols=282  Identities=17%  Similarity=0.307  Sum_probs=261.2

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      |...|.+++|+|++++|++|+.| ++|+|||+.+++.+..+.+|...|                 ++++|+|++.+++++
T Consensus        16 H~~~I~~l~~sp~~~~l~s~s~D-g~i~iWd~~~~~~~~~~~~h~~~V-----------------~~~~~~~~~~~~~~~   77 (317)
T d1vyhc1          16 HRSPVTRVIFHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSV-----------------QDISFDHSGKLLASC   77 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCE-----------------EEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCcE-----------------EEEeeeccccccccc
Confidence            44568899999999999999975 999999999999999999999988                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      +.++.+.+|+.........+..+.           ..+.++.|+++++.+++++.|+.+++|++.+++....+.+|...+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          78 SADMTIKLWDFQGFECIRTMHGHD-----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             ETTSCCCEEETTSSCEEECCCCCS-----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccccccccccccccc-----------ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            999999999998877666665554           347899999999999999999999999999999999999999999


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCC-------------------eEEEEeeCC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRND-------------------HMFLVCPMR  299 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-------------------~~~~~~~~~  299 (622)
                      .+++|++++.+|++++.|+.|++|++.+++....+. +...+.++.++|+..                   .++++++.|
T Consensus       147 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             eeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            999999999999999999999999999999988887 778899999988643                   357888999


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      +.+++|++++...+..+..|...+.+++++|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++
T Consensus       227 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s  306 (317)
T d1vyhc1         227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT  306 (317)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEe
Q psy2110         380 NTGDRLIRVYN  390 (622)
Q Consensus       380 ~~~d~~i~i~d  390 (622)
                      ++.|++|++||
T Consensus       307 ~s~Dg~i~iWd  317 (317)
T d1vyhc1         307 GSVDQTVKVWE  317 (317)
T ss_dssp             EETTSEEEEEC
T ss_pred             EeCCCeEEEeC
Confidence            99999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-38  Score=306.30  Aligned_cols=277  Identities=13%  Similarity=0.133  Sum_probs=239.4

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND  162 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d  162 (622)
                      ...+++++|+|+.|+.+.  ++.|.+|++.+++..+.+.+|...|                 ++++|+|+|++||+|+.|
T Consensus        19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v-----------------~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQT-----------------TVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCE-----------------EEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCE-----------------EEEEEeCCCCeEeccccC
Confidence            344689999999999987  3689999999999999999999998                 599999999999999999


Q ss_pred             CcEEEEecCCcccccc--cccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccCCcC
Q psy2110         163 GRIVLWDFLTRGIAKI--ISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAHMHP  238 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~  238 (622)
                      |+|+|||+.++.....  +..|.           ..|.+++|+|++++|++++.  +..+++|++++++....+.+|...
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFS-----------GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSS-----------SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             ceEeeeeeecccccccccccccc-----------Cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999988765432  33332           35899999999999999875  456999999999999999999999


Q ss_pred             eeEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         239 VCSISWSRNGYK-IISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       239 v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      |++++|+|++.+ |++|+.|+.|++||+++++....+. +..+|.++.|+|+++ ++++++.|+.+++||.........+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             cccccccccceeeecccccccccccccccccccccccccccccccccccCcccc-ccccccccccccccccccccccccc
Confidence            999999999885 8889999999999999999888887 788999999999887 6778899999999999887655443


Q ss_pred             -------cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCC---CEEEEEEcCCCCEEEEEeCCCcE
Q psy2110         317 -------DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTT---AIKSIEFARRGNCLLVNTGDRLI  386 (622)
Q Consensus       317 -------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~d~~i  386 (622)
                             ..|...|.+++|+|++++|++|+.||.|+|||+++++++.++..|..   .+.++.|  ++..|++++.||.|
T Consensus       228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI  305 (311)
T ss_dssp             BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred             cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEE
Confidence                   34678899999999999999999999999999999999999886643   3444544  56679999999999


Q ss_pred             EEEecc
Q psy2110         387 RVYNHQ  392 (622)
Q Consensus       387 ~i~d~~  392 (622)
                      ++||++
T Consensus       306 ~~wd~d  311 (311)
T d1nr0a1         306 NFVNPE  311 (311)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-38  Score=305.44  Aligned_cols=281  Identities=16%  Similarity=0.216  Sum_probs=237.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE--QKY  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~  274 (622)
                      +..++++|+|+.|+++. ++.|.+|++.++.....+.+|...|++++|+|+|++|++|+.||+|++||+.+++..  ..+
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~   98 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI   98 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc
Confidence            45679999999999885 668999999999999999999999999999999999999999999999999987643  334


Q ss_pred             e-CCCCeEEEEEeCCCCeEEEEee-CCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCE-EEEEecCCeEEEEeCCC
Q psy2110         275 R-FPSPILKVQFHPRNDHMFLVCP-MRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQH-VVTGNSKGKVLVLSCPA  351 (622)
Q Consensus       275 ~-~~~~v~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~  351 (622)
                      . |..+|.+++|+|++..+++++. .+..+++|+..+......+..|...+.+++|+|++++ +++|+.||.|++||+++
T Consensus        99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1          99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             ccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            4 7889999999999986555543 3566899999998888899999999999999999985 78899999999999999


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeec-----cccceeeeeEEEcCC
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-----LVNKTMWKKCCFSGD  426 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~spd  426 (622)
                      ++....+..|...|+++.|+|++++|++++.|+.|++||+...         .....+..     ..+...+.+++|+|+
T Consensus       179 ~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~---------~~~~~~~~~~~~~~~h~~~V~~~~~s~~  249 (311)
T d1nr0a1         179 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---------TKTGVFEDDSLKNVAHSGSVFGLTWSPD  249 (311)
T ss_dssp             BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             cccccccccccccccccccCccccccccccccccccccccccc---------cccccccccccccccccccccccccCCC
Confidence            9999999999999999999999999999999999999998842         22222221     112346788999999


Q ss_pred             CCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecC
Q psy2110         427 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQN  488 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~  488 (622)
                      |++|++|+. |+.|+|||+.++++++.+..|.......+.+.+++..|++++ ||.|++||++
T Consensus       250 ~~~l~tgs~-Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         250 GTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeC-CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            999999997 999999999999999999877643233334444556788888 9999999973

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-38  Score=311.59  Aligned_cols=327  Identities=18%  Similarity=0.240  Sum_probs=255.2

Q ss_pred             eecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccC
Q psy2110          45 VNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  124 (622)
Q Consensus        45 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~  124 (622)
                      ....++...+|+.....       .........+.|...|.|++|||||++||+|+ | +.|+|||+.+++.+..+..+.
T Consensus        33 ~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d-~~i~iW~~~~~~~~~~~~~~~  103 (388)
T d1erja_          33 KKQTNDYYILYNPALPR-------EIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDS  103 (388)
T ss_dssp             EEECSSCEEEECTTSCC-------CEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC--
T ss_pred             ccCCCCcEEEeCCCCCc-------ceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-C-CeEEEEEecccceEeeecccc
Confidence            44455666666653211       11122233345667889999999999999987 4 899999999999998888765


Q ss_pred             cceeEEEE-eecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEEC
Q psy2110         125 GELLLDVV-EFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFN  203 (622)
Q Consensus       125 ~~v~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  203 (622)
                      ........ ...........|++++|+|++++|++|+.||.|++|+...++....+..|.           ..|.+++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~-----------~~v~~~~~~  172 (388)
T d1erja_         104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE-----------QDIYSLDYF  172 (388)
T ss_dssp             ---------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-----------SCEEEEEEC
T ss_pred             cccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccc-----------ccccccccc
Confidence            44321100 000111222346899999999999999999999999999988877776665           358999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--------
Q psy2110         204 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR--------  275 (622)
Q Consensus       204 ~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------  275 (622)
                      +++..+++++.++.+++||+.+.........+...+....+.+++.+|++++.|+.|++|++.++.....+.        
T Consensus       173 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~  252 (388)
T d1erja_         173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG  252 (388)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred             cccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccC
Confidence            999999999999999999999988887777665555444444588999999999999999999998877654        


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce------------eecccCCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ------------IVPIDEDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                      |...|.+++|+|++. ++++++.|+.+++||++....            ......|...+.+++|+|++++|++|+.||.
T Consensus       253 h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~  331 (388)
T d1erja_         253 HKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  331 (388)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence            457899999999887 678899999999999875432            3344567888999999999999999999999


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEE------cCCCCEEEEEeCCCcEEEEecc
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEF------ARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~------s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      |++||+++++++.++++|.+.|.++++      +|++++|++++.||+|+||+++
T Consensus       332 i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999975      5789999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-37  Score=300.52  Aligned_cols=290  Identities=20%  Similarity=0.347  Sum_probs=262.9

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      ......|+||.+.|                 ++++|+|++++||||+.||+|+|||+.+++.+..+..|.          
T Consensus         7 ~~~~~~L~GH~~~I-----------------~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~----------   59 (317)
T d1vyhc1           7 PPEKYALSGHRSPV-----------------TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT----------   59 (317)
T ss_dssp             SSCSCEEECCSSCE-----------------EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCS----------
T ss_pred             CCccEEEcCCCCCe-----------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC----------
Confidence            34456789999998                 599999999999999999999999999999988887765          


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                       ..|.+++|+|++.+++++..++.+.+|+....+....+..|...+.++.|++++..+++++.|+.+++||+++++....
T Consensus        60 -~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          60 -DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             -CcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeE
Confidence             3589999999999999999999999999999998888999999999999999999999999999999999999999888


Q ss_pred             Ee-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC--------------------C
Q psy2110         274 YR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR--------------------G  332 (622)
Q Consensus       274 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~  332 (622)
                      +. +...+.+++|+|++. ++++++.++.+++|+..+......+..+...+..+.++++                    +
T Consensus       139 ~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (317)
T d1vyhc1         139 FTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG  217 (317)
T ss_dssp             EECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred             EccCCCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCC
Confidence            87 778899999999887 6788999999999999999988888888888888888765                    3


Q ss_pred             CEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeecc
Q psy2110         333 QHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL  412 (622)
Q Consensus       333 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  412 (622)
                      .++++++.|+.|++|++++++++..+.+|...|.+++|+|++++|++++.||.|++||+.         ..+.+..+..+
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~h  288 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---------NKRCMKTLNAH  288 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---------TSCCCEEEECC
T ss_pred             ceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC---------CCcEEEEEcCC
Confidence            578999999999999999999999999999999999999999999999999999999998         34566666654


Q ss_pred             ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         413 VNKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       413 ~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                      .  ..+.+++|+|++++|++|+. |++|+|||
T Consensus       289 ~--~~V~~~~~s~~~~~l~s~s~-Dg~i~iWd  317 (317)
T d1vyhc1         289 E--HFVTSLDFHKTAPYVVTGSV-DQTVKVWE  317 (317)
T ss_dssp             S--SCEEEEEECSSSSCEEEEET-TSEEEEEC
T ss_pred             C--CCEEEEEEcCCCCEEEEEeC-CCeEEEeC
Confidence            3  46788999999999999997 99999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-37  Score=298.12  Aligned_cols=279  Identities=15%  Similarity=0.233  Sum_probs=244.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc----E
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE----C  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~  270 (622)
                      ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++.++++++.|+.+++|+.....    .
T Consensus        56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  135 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV  135 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCE
T ss_pred             CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccccccc
Confidence            459999999999999999999999999999999999999999999999999999999999999999999976543    3


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      ...+. +...........+ . .+.....+.....+.............+...+....+.+.+.++++++.++.|++||+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~  213 (340)
T d1tbga_         136 SRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV  213 (340)
T ss_dssp             EEEECCCSSCEEEEEEEET-T-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ceecccccccccccccccc-c-ccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC
Confidence            34444 3334444444433 2 5677788888888988888777777788888999999999999999999999999999


Q ss_pred             CCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCe
Q psy2110         350 PALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEY  429 (622)
Q Consensus       350 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  429 (622)
                      ++++++..+.+|...|++++|+|++++|++++.|+.|++|++.         ....+..+........+.+++|+|+|++
T Consensus       214 ~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR---------ADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------TTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec---------ccccccccccccccCceEEEEECCCCCE
Confidence            9999999999999999999999999999999999999999998         3344455555555567788999999999


Q ss_pred             EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         430 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      |++|+. ||.|++||+.+++++..+.+|.+. |++++|+|++++|++++ ||+|+|||
T Consensus       285 l~~g~~-dg~i~iwd~~~~~~~~~~~~H~~~-V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         285 LLAGYD-DFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEET-TSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEC-CCEEEEEECCCCcEEEEEcCCCCC-EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999997 899999999999999999999886 99999999999999999 99999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=285.58  Aligned_cols=328  Identities=15%  Similarity=0.303  Sum_probs=265.5

Q ss_pred             EEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcc
Q psy2110         109 WEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFD  188 (622)
Q Consensus       109 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  188 (622)
                      |+..+.++.+.++||.+.|.                 + +++++|++||||+.||+|+|||+.+++.+..+..|.     
T Consensus         1 W~~~~~~~~~~l~GH~~~V~-----------------s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~-----   57 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVI-----------------T-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-----   57 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCE-----------------E-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCS-----
T ss_pred             CCCCCCCcCEEECCcCCceE-----------------E-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCC-----
Confidence            55566678889999999884                 3 356679999999999999999999999988888775     


Q ss_pred             cccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy2110         189 GALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG  268 (622)
Q Consensus       189 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~  268 (622)
                            ..|.+++|+|+  +|++++.|+.+++|+............+...+......  ...++.+..|+.+.+|+..++
T Consensus        58 ------~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~  127 (342)
T d2ovrb2          58 ------GGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG  127 (342)
T ss_dssp             ------SCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             ------CCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccc
Confidence                  35899999874  99999999999999998888777777776666665554  457888999999999999999


Q ss_pred             cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      +....+............. . ..++.++.++.+++||......+..+..|...+..  +++++.++++++.||.|++||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         128 QCLHVLMGHVAAVRCVQYD-G-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             CEEEEEECCSSCEEEEEEC-S-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEE
T ss_pred             cceeeeecccccceeeccc-c-ceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEee
Confidence            9888877554444433332 2 25788889999999999998888888887766554  556789999999999999999


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccc-eeeeeEEEcCCC
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK-TMWKKCCFSGDG  427 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg  427 (622)
                      ++.++++..+..|...+.++++++  ++|++++.|+.|++||+..         ......+..+..+ ..+.  ++++++
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~  270 (342)
T d2ovrb2         204 VETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKT---------GQCLQTLQGPNKHQSAVT--CLQFNK  270 (342)
T ss_dssp             TTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTT---------CCEEEEECSTTSCSSCEE--EEEECS
T ss_pred             cccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccc---------ccccccccccceeeecee--ecccCC
Confidence            999999999999999999888765  5899999999999999883         3344444433332 2233  445567


Q ss_pred             CeEEEeeCCCCeEEEEECCCCeeEEEEe-----cCCCCceeEEEECCCCCEEEEEe-CCc----EEEeecC
Q psy2110         428 EYVCAGSARQHALYIWEKSVGNLVKILH-----GTKGELLLDVVWHPVRPIIASIS-SGV----VSLWAQN  488 (622)
Q Consensus       428 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~v~~sp~~~~l~s~~-dg~----v~iw~~~  488 (622)
                      +++++++. ||.|++||+.++++++.+.     +|.+ .|++++|+|++.+||+++ ||+    |++||++
T Consensus       271 ~~~~s~s~-Dg~i~iwd~~tg~~i~~~~~~~~~~~~~-~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         271 NFVITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGG-VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             SEEEEEET-TSEEEEEETTTCCEEEEEEECTTGGGTC-EEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CeeEEEcC-CCEEEEEECCCCCEEEEEecccCCCCCC-CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            89999997 9999999999999998875     3444 499999999999999998 885    9999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.9e-36  Score=296.38  Aligned_cols=283  Identities=14%  Similarity=0.152  Sum_probs=229.1

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCc--eEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGN--LVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      .+++|++|||||++||+++.+ +.|+|||+.+++  .+..+++|.+.|                 ++++|+|++++|++|
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~-~~i~iw~~~~~~~~~~~~l~gH~~~V-----------------~~l~fsp~~~~l~s~   69 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQV-----------------TGVDWAPDSNRIVTC   69 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCE-----------------EEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCC-CEEEEEECCCCCEEEEEEecCCCCCE-----------------EEEEECCCCCEEEEE
Confidence            347899999999999999875 899999998775  667789999998                 599999999999999


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce----EEEeccC
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI----AKIISAH  235 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~  235 (622)
                      +.|++|+||++.++.....+......         ..|.+++|+|+++.|++++.++.+++|++.....    ......|
T Consensus        70 s~D~~i~vWd~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~  140 (371)
T d1k8kc_          70 GTDRNAYVWTLKGRTWKPTLVILRIN---------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI  140 (371)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCS---------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred             ECCCeEEEEeeccccccccccccccc---------ccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence            99999999999876544333222111         3589999999999999999999999999876543    3445678


Q ss_pred             CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------------EEEEEe-CCCCeEEEEEeCCCCeEEEEe
Q psy2110         236 MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGE------------------CEQKYR-FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      ...|.+++|+|++++|++|+.|+.|++|+.....                  ...... +...+.+++|+|+++ .++++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~  219 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWV  219 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-ccccc
Confidence            8999999999999999999999999999986432                  333333 677899999999987 57788


Q ss_pred             eCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe--CCCccEEEE-----------------
Q psy2110         297 PMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS--CPALELKAS-----------------  357 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~-----------------  357 (622)
                      +.|+.+++||+.....+..+..|...+.+++|+|++++|++|. |+.+++|.  ...+.....                 
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR  298 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred             ccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccce
Confidence            8999999999999999999999999999999999998887765 66555554  322221100                 


Q ss_pred             ----------------------EecCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeccc
Q psy2110         358 ----------------------FKASTTAIKSIEFARRG----NCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       358 ----------------------~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~i~d~~~  393 (622)
                                            ...|.+.|+++++.+.+    ..|++++.||.|++||++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                  01377889999997754    3689999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=291.86  Aligned_cols=320  Identities=14%  Similarity=0.226  Sum_probs=252.4

Q ss_pred             EEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccc
Q psy2110         117 VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISL  196 (622)
Q Consensus       117 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (622)
                      ..+|+||...|.                +|++|  ++++||||+.||+|+|||+.+++.+..+..|.           ..
T Consensus         5 ~~tL~GH~~~vi----------------tc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~-----------~~   55 (355)
T d1nexb2           5 RTTLRGHMTSVI----------------TCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD-----------GG   55 (355)
T ss_dssp             EEEEECCSSSCE----------------EEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCS-----------SC
T ss_pred             cEEECCcCCCcE----------------EEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-----------CC
Confidence            456899988874                45555  68899999999999999999999999888775           35


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCC--cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHM--HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY  274 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  274 (622)
                      |.+++|+|+ .+|++|+.|+.|++|++...+.......+.  .......+++++.++++++.|+.|++||+.+.......
T Consensus        56 V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~  134 (355)
T d1nexb2          56 VWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  134 (355)
T ss_dssp             EEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred             EEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence            899999986 589999999999999999888776655433  34556677889999999999999999999876544332


Q ss_pred             e------------------------CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEee
Q psy2110         275 R------------------------FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDR  330 (622)
Q Consensus       275 ~------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  330 (622)
                      .                        +...+  ..+.+++. +++.+..++.+++||+++...+.....+...+.++.+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~-~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  211 (355)
T d1nexb2         135 GEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH  211 (355)
T ss_dssp             ----CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             cccceeccceeccccccceeeeeeeccccc--cccccccc-eeeeecccceeeeeecccccceeeeeccccccccccccc
Confidence            2                        11112  22334444 688889999999999999998888888899999999999


Q ss_pred             CCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ  410 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  410 (622)
                      ++.++++++.|+.|++||++++..+..+.+|...|.++++++  ++|++++.||.|++||+.+           ....+.
T Consensus       212 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-----------~~~~~~  278 (355)
T d1nexb2         212 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND-----------YSRKFS  278 (355)
T ss_dssp             TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTT-----------CCEEEE
T ss_pred             cceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccc-----------cceecc
Confidence            999999999999999999999999999999999999999974  6899999999999999983           122222


Q ss_pred             ccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE-EecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         411 DLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       411 ~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      .+... .....++++++++|++|+  |+.|+|||+++|+++.. +.+|.+. |++++|+|+ .++++++ ||+++||.+
T Consensus       279 ~~~~~-~~~~~~~~~~~~~l~~g~--d~~i~vwd~~tg~~~~~~~~~~~~~-V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         279 YHHTN-LSAITTFYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQ-IWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EECTT-CCCCCEEEECSSEEEEEE--TTEEEEEETTTCCBCCSCTTTTCSE-EEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             cccCC-ceEEEEEcCCCCEEEEEe--CCEEEEEECCCCCEEEEEecCCCCC-EEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            22221 112236788888887775  78999999999998854 5667665 999999987 4677777 999777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-35  Score=285.74  Aligned_cols=289  Identities=18%  Similarity=0.290  Sum_probs=247.4

Q ss_pred             hhhhccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCC
Q psy2110          75 LQDLVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG  153 (622)
Q Consensus        75 ~~~~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~  153 (622)
                      .+++.+| ..|.+++|+|++++||+|+.| |+|+|||+.+++.+..+.+|...|                 .+++|+|++
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~D-g~v~iWd~~~~~~~~~~~~~~~~v-----------------~~v~~~~~~  109 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQD-GKLIIWDSYTTNKVHAIPLRSSWV-----------------MTCAYAPSG  109 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEEEEECSCSCE-----------------EEEEECTTS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECC-CceeeeecccceeEEEEecccccE-----------------EeeEeeccc
Confidence            3445544 558899999999999999975 999999999999999999999988                 599999999


Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      .++++|+.|+.+++|+................        ............+..++....+.....+............
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAG--------HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECC--------CSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeecccceeecccccccccccccceeccc--------cccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999998765433222111100        0122333444455677788889999999988888888888


Q ss_pred             cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         234 AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      .+...+....+.+.+.++++++.|+.|++||+++++++..+. |...|.+++|+|++. ++++++.|+.+++|+++....
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE
T ss_pred             ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccccc
Confidence            888999999999999999999999999999999999998887 788999999999887 678899999999999998776


Q ss_pred             eecc--cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy2110         313 IVPI--DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYN  390 (622)
Q Consensus       313 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d  390 (622)
                      ...+  ..+...+..++|+|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            6543  45667789999999999999999999999999999999999999999999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.5e-35  Score=289.94  Aligned_cols=280  Identities=14%  Similarity=0.177  Sum_probs=226.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRG--IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQ  272 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  272 (622)
                      .+|+|++|+|+|++||+|+.++.|++|++.+++  .+..+++|.++|++++|+|++++|++++.|++|++||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            458999999999999999999999999998775  567788999999999999999999999999999999999887655


Q ss_pred             EEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce----eecccCCCCceEEEEEeeCCCEEEEEecCCeEE
Q psy2110         273 KYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ----IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVL  345 (622)
Q Consensus       273 ~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  345 (622)
                      .+.   +...+.+++|+|+++ .+++++.++.+++|++.....    ......|...+.+++|+|++++|++|+.|+.|+
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            543   567899999999987 578888999999999876532    334556788999999999999999999999999


Q ss_pred             EEeCCC------------------ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         346 VLSCPA------------------LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       346 i~d~~~------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      +|+...                  ++.+.....|...|.+++|+|++++|++++.|+.|++||+..         ...+.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~---------~~~~~  237 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK---------KMAVA  237 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG---------TTEEE
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec---------cccee
Confidence            999754                  345667778999999999999999999999999999999983         34455


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEE--EECCCCeeEEE--------------------------------
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYI--WEKSVGNLVKI--------------------------------  453 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~i--wd~~~~~~~~~--------------------------------  453 (622)
                      .+..  +..++.+++|+|+|++|++|.  |+.+++  |+...+.....                                
T Consensus       238 ~~~~--~~~~v~s~~fs~d~~~la~g~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (371)
T d1k8kc_         238 TLAS--ETLPLLAVTFITESSLVAAGH--DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  313 (371)
T ss_dssp             EEEC--SSCCEEEEEEEETTEEEEEET--TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             eeec--ccccceeeeecCCCCEEEEEc--CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecc
Confidence            5543  234578899999999988776  444444  44333222100                                


Q ss_pred             -------EecCCCCceeEEEECCCCC----EEEEEe-CCcEEEeecCC
Q psy2110         454 -------LHGTKGELLLDVVWHPVRP----IIASIS-SGVVSLWAQNQ  489 (622)
Q Consensus       454 -------~~~~~~~~v~~v~~sp~~~----~l~s~~-dg~v~iw~~~~  489 (622)
                             ...|.+. |++++++|.+.    .|+|++ ||.|+||+++.
T Consensus       314 ~~~~~~~~~~H~~~-I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         314 AAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             ----CCCSSSSSSC-EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccceecccccCC-EEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                   0125555 99999987553    688999 99999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-34  Score=277.88  Aligned_cols=290  Identities=12%  Similarity=0.127  Sum_probs=228.3

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      |+..+.+.||...|                 ++++|+|++++|++|+.||+|++||+.+++....+.....         
T Consensus         2 g~~~~~~~GH~~~V-----------------~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~---------   55 (299)
T d1nr0a2           2 GSIDQVRYGHNKAI-----------------TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA---------   55 (299)
T ss_dssp             TEEEEEECCCSSCE-----------------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS---------
T ss_pred             CccceEcCCCCCCc-----------------EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC---------
Confidence            67788999999998                 5999999999999999999999999999887776643211         


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce---EEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI---AKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                       ..|.+++|+|+|+++ +++.|+.+++|+......   ......+...+.+++|+++++.+++++ ++.+++|+..   .
T Consensus        56 -~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~---~  129 (299)
T d1nr0a2          56 -TMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG---K  129 (299)
T ss_dssp             -SCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT---E
T ss_pred             -CcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccc---c
Confidence             358999999999755 556799999999865432   222345677899999999998777665 5789999854   2


Q ss_pred             EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee-ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeC
Q psy2110         271 EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI-VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSC  349 (622)
Q Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  349 (622)
                      .........+.+++|+|++. ++++++.++.+++||+++.... .....|...+.+++|+|+++++++++.++.|++||+
T Consensus       130 ~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  208 (299)
T d1nr0a2         130 LTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  208 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445667789999999887 6778899999999999876543 344567888999999999999999999999999999


Q ss_pred             CCccEEE---EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCC
Q psy2110         350 PALELKA---SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD  426 (622)
Q Consensus       350 ~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  426 (622)
                      .++....   .+..|...|++++|+|++++|++++.|+.|++||+..         ...........+......+.++++
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~v~~~~~~~  279 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK---------PSDHPIIIKGAHAMSSVNSVIWLN  279 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---------TTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceEEEcCCCEEEEEECCC---------CCcceEEEecCCCCCcEEEEEECC
Confidence            8776553   4557889999999999999999999999999999983         111122222222222233345567


Q ss_pred             CCeEEEeeCCCCeEEEEECC
Q psy2110         427 GEYVCAGSARQHALYIWEKS  446 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~  446 (622)
                      +++|++++. |+.|++||+.
T Consensus       280 ~~~l~s~s~-D~~i~iWdl~  298 (299)
T d1nr0a2         280 ETTIVSAGQ-DSNIKFWNVP  298 (299)
T ss_dssp             TTEEEEEET-TSCEEEEECC
T ss_pred             CCEEEEEeC-CCEEEEEecc
Confidence            889999997 9999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-34  Score=275.65  Aligned_cols=287  Identities=15%  Similarity=0.193  Sum_probs=221.9

Q ss_pred             ccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcCCCCEEE
Q psy2110         174 GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSRNGYKII  252 (622)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  252 (622)
                      ...+.+.+|.           ..|++++|+|+|++|++|+.||.|++||+.+++..+.+. .|...|++++|+|+++ ++
T Consensus         3 ~~~~~~~GH~-----------~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~   70 (299)
T d1nr0a2           3 SIDQVRYGHN-----------KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LF   70 (299)
T ss_dssp             EEEEEECCCS-----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EE
T ss_pred             ccceEcCCCC-----------CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-ee
Confidence            4456666765           359999999999999999999999999999999888875 6899999999999997 55


Q ss_pred             EEeCCCcEEEEECCCCcE----EEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEE
Q psy2110         253 SASTDNNVCIWDVLTGEC----EQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASF  328 (622)
Q Consensus       253 s~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  328 (622)
                      +++.|+.+++|+......    .....+...+.+++++|++..+  +++.++.+.+|+.......    .....+.++++
T Consensus        71 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~--~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~  144 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA--VAACYKHIAIYSHGKLTEV----PISYNSSCVAL  144 (299)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE--EEEESSEEEEEETTEEEEE----ECSSCEEEEEE
T ss_pred             cccceeeEEEeccCCccccccccccccccccccccccccccccc--ccccccccccccccccccc----ccccccccccc
Confidence            667799999999865432    1223367788999999998743  3344668999985432211    12345678999


Q ss_pred             eeCCCEEEEEecCCeEEEEeCCCccEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcce
Q psy2110         329 DRRGQHVVTGNSKGKVLVLSCPALELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQ  407 (622)
Q Consensus       329 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  407 (622)
                      +|+++++++|+.+|.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+......      ....
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------~~~~  218 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL------AHTN  218 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE------SCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccc
Confidence            9999999999999999999998877554 44578899999999999999999999999999998742111      1111


Q ss_pred             eeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeE--EEEecCCCCceeEEEECCCCCEEEEEe-CCcEEE
Q psy2110         408 KLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV--KILHGTKGELLLDVVWHPVRPIIASIS-SGVVSL  484 (622)
Q Consensus       408 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~i  484 (622)
                      .+..  +...+.+++|+|+|++|++|+. |+.|++||+.++...  .....|....+..+.|. ++++|++++ ||+|++
T Consensus       219 ~~~~--h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         219 SWTF--HTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCC--CSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEE
T ss_pred             cccc--cccccccccccccccceEEEcC-CCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEEEE
Confidence            1211  2346788999999999999997 899999999876543  33344555547777664 567888888 999999


Q ss_pred             eecC
Q psy2110         485 WAQN  488 (622)
Q Consensus       485 w~~~  488 (622)
                      |++.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-34  Score=278.63  Aligned_cols=318  Identities=16%  Similarity=0.271  Sum_probs=241.9

Q ss_pred             hccc-cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE
Q psy2110          78 LVNK-TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL  156 (622)
Q Consensus        78 ~~~~-~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  156 (622)
                      +.+| ..+.+ ++++++++|++|+.| ++|+|||+.+++++..+.+|.+.|                 ++++|+|+ .+|
T Consensus         8 L~GH~~~vit-c~~~~~~~l~tgs~D-g~i~vWd~~~~~~~~~l~~H~~~V-----------------~~l~~s~~-~~l   67 (355)
T d1nexb2           8 LRGHMTSVIT-CLQFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGV-----------------WALKYAHG-GIL   67 (355)
T ss_dssp             EECCSSSCEE-EEEEETTEEEEEETT-TEEEEEETTTTEEEEEEECCSSCE-----------------EEEEEETT-TEE
T ss_pred             ECCcCCCcEE-EEEECCCEEEEEeCC-CeEEEEECCCCcEEEEEECCCCCE-----------------EEEEEcCC-CEE
Confidence            4445 33432 345578999999975 999999999999999999999998                 59999986 589


Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEE-----
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKI-----  231 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~-----  231 (622)
                      ++|+.|++|++|+................         .......++++++++++++.|+.|++|++.+......     
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~  138 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTHVFEGHNST---------VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH  138 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSC---------EEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------
T ss_pred             EEEeccccccccccccccccccccccccc---------ccccccccccccceeeeecCCCcEEEEEccCCceeccccccc
Confidence            99999999999999887665554433322         2355677889999999999999999999876543221     


Q ss_pred             ------------------eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeE
Q psy2110         232 ------------------ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHM  292 (622)
Q Consensus       232 ------------------~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~  292 (622)
                                        ...|...+.  .+.+++++++++..|+.|++||+.+++.+.... +...+.++.++|++. .
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  215 (355)
T d1nexb2         139 DYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-R  215 (355)
T ss_dssp             CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-E
T ss_pred             eeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-e
Confidence                              122333333  345578899999999999999999999888776 677899999999887 5


Q ss_pred             EEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEE-EEc
Q psy2110         293 FLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSI-EFA  371 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-~~s  371 (622)
                      +++++.++.+++|+.++...+..+..|...+.+++++  +++|++++.||.|++||++++....  ..|...+.++ .++
T Consensus       216 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~  291 (355)
T d1nexb2         216 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFY  291 (355)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEE
T ss_pred             eecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEEEc
Confidence            7788899999999999999999999999999998876  5799999999999999999876544  4455555555 456


Q ss_pred             CCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEE
Q psy2110         372 RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWE  444 (622)
Q Consensus       372 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd  444 (622)
                      +++++|+++ .|+.|++||+++         .+.+.... ..+...+.+++|+|+ .++++++. ||.++||-
T Consensus       292 ~~~~~l~~g-~d~~i~vwd~~t---------g~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~-dg~~~l~~  351 (355)
T d1nexb2         292 VSDNILVSG-SENQFNIYNLRS---------GKLVHANI-LKDADQIWSVNFKGK-TLVAAVEK-DGQSFLEI  351 (355)
T ss_dssp             ECSSEEEEE-ETTEEEEEETTT---------CCBCCSCT-TTTCSEEEEEEEETT-EEEEEEES-SSCEEEEE
T ss_pred             CCCCEEEEE-eCCEEEEEECCC---------CCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEEC-CCcEEEEE
Confidence            677765555 589999999983         22232111 112356788999986 46666775 88866654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-34  Score=275.66  Aligned_cols=289  Identities=11%  Similarity=0.144  Sum_probs=231.3

Q ss_pred             ceeEEEEcCCCCEEEEecCCCCeEEEEEcCC--CceEEEEeccCc-ceeEEEEeecCccccccceeEEEEcC--CCCEEE
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQHALYIWEKSV--GNLVKILHGTKG-ELLLDVVEFDGALDCISLAVTCAFNK--RGTLLA  157 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~--~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~  157 (622)
                      .+++++|+|+++.|++++.+...|+.|+...  ...+..+.+|.. .+                 ++++|+|  ++.+|+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v-----------------~~v~fsP~~~g~~la   81 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVV-----------------TTVKFSPIKGSQYLC   81 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCE-----------------EEEEECSSTTCCEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCE-----------------EEEEEeeCCCCCEEE
Confidence            4567999999999999875433455666433  345677888865 45                 6999998  567999


Q ss_pred             EeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC--CCeEEEEEcCCCceEEEeccC
Q psy2110         158 VGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN--DGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       158 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      +|+.||+|+|||+..++....+..+......   .....|.+++|++++++|++++.  ++.+.+|+..+++.+..+.+|
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQ---VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEE---CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccc---cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence            9999999999999887665554433221110   11245899999999999988764  678999999999999999999


Q ss_pred             CcCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEe----CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         236 MHPVCSISWSRNGYK-IISASTDNNVCIWDVLTGECEQKYR----FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      ...|.+++|+|++.+ +++++.|+.+++||+...+....+.    +...|.+++|+|++..++++++.|+.|++||+++.
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc
Confidence            999999999998765 7789999999999999888776654    45679999999998888999999999999999999


Q ss_pred             ceeecccCCCCceEEEEEe---eCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC--EEEEEEcCC-CCEEEEEeCCC
Q psy2110         311 HQIVPIDEDSDLSIVASFD---RRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA--IKSIEFARR-GNCLLVNTGDR  384 (622)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--i~~~~~s~~-~~~l~~~~~d~  384 (622)
                      ..+..+..|...+..+.|+   ++|++|++++.|+.|+|||+++++++..+..|...  +..+++.+. +.+|++++.||
T Consensus       239 ~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            9888888887776655555   68999999999999999999999999988866554  334444332 34789999999


Q ss_pred             cEEEEec
Q psy2110         385 LIRVYNH  391 (622)
Q Consensus       385 ~i~i~d~  391 (622)
                      .|++||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-32  Score=263.95  Aligned_cols=320  Identities=16%  Similarity=0.279  Sum_probs=249.4

Q ss_pred             hhhhhccccc-eeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCC
Q psy2110          74 KLQDLVNKTM-WKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKR  152 (622)
Q Consensus        74 ~~~~~~~~~~-~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d  152 (622)
                      ....+.+|.. |.+ +++++|++||+|+.| |+|+|||+.++++++.+.+|.+.|                 ++++|+|+
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~D-g~i~vWd~~~~~~~~~~~~h~~~V-----------------~~v~~~~~   68 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGV-----------------WSSQMRDN   68 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCE-----------------EEEEEETT
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCC-CeEEEEECCCCCEEEEEeCCCCCE-----------------EEEEeCCC
Confidence            3344556654 444 477789999999975 999999999999999999999998                 49999875


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                        +|++|+.|+.+++|+...............           .+.....  ....++.+..++.+.+|+..+++....+
T Consensus        69 --~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~  133 (342)
T d2ovrb2          69 --IIISGSTDRTLKVWNAETGECIHTLYGHTS-----------TVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL  133 (342)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECCCSS-----------CEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             --ccccceecccccccccccccceecccccce-----------eEeeeec--ccccccccccceeEEEeecccccceeee
Confidence              999999999999999887654443333221           2333333  3467788899999999999999888777


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ..+......  +......+++++.|+.|++||....+.+..+. +...+..+.+  ++. .+++++.|+.+++||++...
T Consensus       134 ~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~  208 (342)
T d2ovrb2         134 MGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGN  208 (342)
T ss_dssp             ECCSSCEEE--EEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCC
T ss_pred             eccccccee--eccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeecccce
Confidence            655444333  34456789999999999999999998888776 4455554444  444 68899999999999999999


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec---CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA---STTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      .+..+..|...+.+++++  ++++++++.||.|++||+...+....+..   |...+.++.++  ++++++++.||.|++
T Consensus       209 ~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~i  284 (342)
T d2ovrb2         209 CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL  284 (342)
T ss_dssp             EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred             eeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEE
Confidence            999999999888776654  57999999999999999999988887774   45566666665  568999999999999


Q ss_pred             EecccccccCCCCCCCcceeeec---cccceeeeeEEEcCCCCeEEEeeCCCC----eEEEEECC
Q psy2110         389 YNHQEVLNAGKDGDPEPIQKLQD---LVNKTMWKKCCFSGDGEYVCAGSARQH----ALYIWEKS  446 (622)
Q Consensus       389 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~d~----~i~iwd~~  446 (622)
                      ||++         ..+.++.+..   ......+.+++|+|++.+|++|+. ||    .|++||+.
T Consensus       285 wd~~---------tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~-dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         285 WDLK---------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR-NGTEETKLLVLDFD  339 (342)
T ss_dssp             EETT---------TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS-SSSSCCEEEEEECC
T ss_pred             EECC---------CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeC-CCCCeeEEEEEeCC
Confidence            9998         3345555532   223456889999999999999986 66    49999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-32  Score=262.63  Aligned_cols=283  Identities=14%  Similarity=0.157  Sum_probs=223.2

Q ss_pred             ceeEEEEcCCCCEEEEeeCCC-cEEEEecCCccc--ccccccccCCCcccccccccceEEEEECC--CCCEEEEEeCCCe
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDG-RIVLWDFLTRGI--AKIISAHMHPEFDGALDCISLAVTCAFNK--RGTLLAVGCNDGR  217 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg-~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~dg~  217 (622)
                      .+++++|+|+++.|+.++.+. .|+.|+......  ...+.+|..          ..|++++|+|  +|++|++|+.||+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~----------~~v~~v~fsP~~~g~~lasgs~Dg~   88 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS----------SVVTTVKFSPIKGSQYLCSGDESGK   88 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT----------SCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCC----------CCEEEEEEeeCCCCCEEEEEeCCCC
Confidence            346899999999999887554 356666544322  333333322          3589999998  5689999999999


Q ss_pred             EEEEEcCCCceE--------EEeccCCcCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEe
Q psy2110         218 IVLWDFLTRGIA--------KIISAHMHPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFH  286 (622)
Q Consensus       218 i~iwd~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  286 (622)
                      |++||+..++..        ..+..|.++|.+++|++++++|++++.  ++.+++|+..+++++..+. |...+.+++|+
T Consensus        89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  168 (325)
T d1pgua1          89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK  168 (325)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred             EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence            999998754422        234578899999999999999988765  5789999999999988887 78899999999


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecCCceee---cccCCCCceEEEEEeeC-CCEEEEEecCCeEEEEeCCCccEEEEEecCC
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDGDHQIV---PIDEDSDLSIVASFDRR-GQHVVTGNSKGKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  362 (622)
                      |+++.++++++.|+.+++|+....+...   ....+...+.+++|+|+ +.++++++.||.|++||+++++.+..+.+|.
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~  248 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ  248 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred             ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc
Confidence            9999889999999999999987655433   34566788999999996 6889999999999999999999999999988


Q ss_pred             CCEEEEEEc---CCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCC-CCeEEEeeCCCC
Q psy2110         363 TAIKSIEFA---RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD-GEYVCAGSARQH  438 (622)
Q Consensus       363 ~~i~~~~~s---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~d~  438 (622)
                      ..+.++.|+   |++++|++++.|+.|+|||++         ..+.++.+..+........+++.+. +.+|++++. ||
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg  318 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVT---------TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DG  318 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETT---------TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TS
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECC---------CCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CC
Confidence            887766665   789999999999999999998         3455666655444433333344332 347888887 89


Q ss_pred             eEEEEEC
Q psy2110         439 ALYIWEK  445 (622)
Q Consensus       439 ~i~iwd~  445 (622)
                      .|+|||+
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=3.4e-31  Score=260.75  Aligned_cols=316  Identities=12%  Similarity=0.064  Sum_probs=215.5

Q ss_pred             EEEEcC-CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC-
Q psy2110          86 KCCFSG-DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-  163 (622)
Q Consensus        86 ~~~~sp-~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-  163 (622)
                      .-.||| ||+++|+++  +|.|++||+.++..++.  +|...+                 ++++|+|||++|++++.+. 
T Consensus         7 ~~~fSP~dG~~~a~~~--~g~v~v~d~~~~~~~~~--~~~~~v-----------------~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV--PEPLRI-----------------RYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             EEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC--SCCSCE-----------------EEEEECSSSEEEEEEEETTE
T ss_pred             cccccCCCCCEEEEEE--CCeEEEEECCCCcEEEc--cCCCCE-----------------EEEEECCCCCEEEEEEcCCC
Confidence            358999 999999987  38999999998877653  687777                 5999999999998877653 


Q ss_pred             -cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110         164 -RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSI  242 (622)
Q Consensus       164 -~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  242 (622)
                       .|++||..+++.... ..+.           ..+.+++|+|+|++|++++.++.+++|++.+++....+..|...+.++
T Consensus        66 ~~v~v~d~~~~~~~~~-~~~~-----------~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKF-EENL-----------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             EEEEEEETTTCCEEEC-CCCC-----------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CEEEEEECCCCcEEEe-eCCC-----------ceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence             799999988765543 3332           358999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         243 SWSRNGYKIISAST----------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       243 ~~s~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      +|+|+|++|+.+..          ++.+++||+.+++......+...+..++|+|                         
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~sp-------------------------  188 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-------------------------  188 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECT-------------------------
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccC-------------------------
Confidence            99999999987643          2346666666665554444444444455555                         


Q ss_pred             eecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc-------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy2110         313 IVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE-------LKASFKASTTAIKSIEFARRGNCLLVNTGDRL  385 (622)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~  385 (622)
                                        +|++|++++.++.+.+|+.....       ....+..+...+..+.|++++..++++..+..
T Consensus       189 ------------------dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  250 (360)
T d1k32a3         189 ------------------DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN  250 (360)
T ss_dssp             ------------------TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred             ------------------CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeec
Confidence                              44455555555555555443222       22333445555556667777776655443211


Q ss_pred             ---EEEEecccccccCCCCCCCcceeeeccccce-eeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCc
Q psy2110         386 ---IRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT-MWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGEL  461 (622)
Q Consensus       386 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  461 (622)
                         .++|.+..        .......+.....+. .+..+.+++++.+++.++. ++.|++||+.+++.. .+.   +. 
T Consensus       251 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~-~~~---~~-  316 (360)
T d1k32a3         251 DMYKRSSPINV--------DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE-KGVLLKYDVKTRKVT-EVK---NN-  316 (360)
T ss_dssp             TGGGGCEECSC--------CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCC-CEEEEEEETTTCCEE-EEE---EE-
T ss_pred             ccccceeeccc--------CcCceeEeeecCCCceEEEEEecCCCeeEEEecCC-CCEEEEEECCCCeEE-Eec---CC-
Confidence               22333221        111112222222221 1112233334446666665 889999999987743 332   23 


Q ss_pred             eeEEEECCCCCEEEEEe-CCcEEEeecCCcc
Q psy2110         462 LLDVVWHPVRPIIASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       462 v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~  491 (622)
                      |.+++|+|||++|++++ ||.|++|++...+
T Consensus       317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             cCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            89999999999999999 9999999996543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.3e-30  Score=244.34  Aligned_cols=280  Identities=16%  Similarity=0.224  Sum_probs=222.2

Q ss_pred             CceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCccccccc
Q psy2110         114 GNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDC  193 (622)
Q Consensus       114 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  193 (622)
                      .+++++++||..+|                 ++++|+|    |+||+.||+|++||+.++.     ..|.          
T Consensus         3 ~~~i~~l~gH~~~I-----------------~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~----------   46 (287)
T d1pgua2           3 DEVLKTISGHNKGI-----------------TALTVNP----LISGSYDGRIMEWSSSSMH-----QDHS----------   46 (287)
T ss_dssp             EEEEEEECCCSSCE-----------------EEEETTT----TEEEETTSCEEETTTTEEE-----CCCC----------
T ss_pred             cceeEEECCCCCce-----------------EEEEECc----EEEEeCCCeEEEEECCCCC-----CCCC----------
Confidence            56889999999999                 5999987    9999999999999987643     2222          


Q ss_pred             ccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         194 ISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       194 ~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                       ..|.++++++++ .+++++.|+++++|++...+       ....+..+++++++..++++ .++.+.+|+..+++....
T Consensus        47 -~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  116 (287)
T d1pgua2          47 -NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKS  116 (287)
T ss_dssp             -SCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEE
T ss_pred             -CCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeee
Confidence             358899998765 57889999999999875422       23457788899888766655 567799999999999998


Q ss_pred             EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc-cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         274 YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI-DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       274 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      +.....+.  ++++++..+++.+..++.+++|++......... ..+...+.+++|+|++.+|++|+.+|.|++||+.++
T Consensus       117 ~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         117 VRLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             EECSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ccccceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc
Confidence            88776654  456667766666666678999998765544443 346778999999999999999999999999999988


Q ss_pred             cEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEE
Q psy2110         353 ELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVC  431 (622)
Q Consensus       353 ~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  431 (622)
                      +... .+..|...|.+++|+|.+...                                           ..+.+++.+|+
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~p~~~~~-------------------------------------------~~~~~~~~~l~  231 (287)
T d1pgua2         195 EVKTSRWAFRTSKINAISWKPAEKGA-------------------------------------------NEEEIEEDLVA  231 (287)
T ss_dssp             EEEECCSCCCSSCEEEEEECCCC-------------------------------------------------CCSCCEEE
T ss_pred             ccccccccccccccceeeeccccccc-------------------------------------------ccccCCCCeeE
Confidence            8665 467889999999999876521                                           14456788999


Q ss_pred             EeeCCCCeEEEEECCC-CeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         432 AGSARQHALYIWEKSV-GNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       432 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      +|+. |+.|+|||+.+ ++.+..+.+|.+. |++++|+|++. |++++ ||+|++|++
T Consensus       232 sgs~-D~~i~iw~~~~~~~~~~~~~~h~~~-V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         232 TGSL-DTNIFIYSVKRPMKIIKALNAHKDG-VNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEET-TSCEEEEESSCTTCCEEETTSSTTC-EEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             eecC-CCeEEEEECCCCCeEEEEeCCCCCC-eEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            9997 89999999876 5677778889887 99999999874 67777 999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=234.14  Aligned_cols=265  Identities=17%  Similarity=0.299  Sum_probs=219.5

Q ss_pred             cceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          82 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        82 ~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      ..|.|  +++||++||+|+.| |+|+|||+.++++++++++|.+.|                 ++++|  ++++|++|+.
T Consensus        16 ~~V~c--~~~d~~~l~sgs~D-g~i~vWd~~~~~~~~~l~~H~~~V-----------------~~v~~--~~~~l~s~s~   73 (293)
T d1p22a2          16 KGVYC--LQYDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSV-----------------LCLQY--DERVIITGSS   73 (293)
T ss_dssp             CCEEE--EECCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCE-----------------EEEEC--CSSEEEEEET
T ss_pred             CCEEE--EEEcCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCCE-----------------eeeec--ccceeecccc
Confidence            44555  45689999999976 999999999999999999999998                 47776  5789999999


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCce---EEEeccCCcC
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI---AKIISAHMHP  238 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~  238 (622)
                      |+.|++|++..+...........             ....+.+....++++..++.+.+|+..+...   ...+..|...
T Consensus        74 D~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIHHCE-------------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECCCCS-------------CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             ccccccccccccccccccccccc-------------ccccccccccceeecccccceeEeeccccccccccccccccccc
Confidence            99999999998866655544322             2334556667889999999999999887553   4556678888


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc
Q psy2110         239 VCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID  317 (622)
Q Consensus       239 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  317 (622)
                      +..+.+.  ...+++++.|+.|++||+++++.+..+. +...+..+.+++.   .+++++.|+.+++||+++...+....
T Consensus       141 v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~  215 (293)
T d1p22a2         141 VNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECGACLRVLE  215 (293)
T ss_dssp             EEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCC---eEEEecCCCEEEEEecccceeeeeec
Confidence            8888775  4578899999999999999999988887 5667777777643   68899999999999999998888888


Q ss_pred             CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC---------ccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         318 EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA---------LELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       318 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                      .+...+..  +++++.+|++|+.||.|++||+..         ..++..+.+|...|++++|+  +++|++++.|++|++
T Consensus       216 ~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~i  291 (293)
T d1p22a2         216 GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI  291 (293)
T ss_dssp             CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEE
T ss_pred             ccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEE
Confidence            88877754  567889999999999999999643         35788899999999999995  568999999999999


Q ss_pred             Ee
Q psy2110         389 YN  390 (622)
Q Consensus       389 ~d  390 (622)
                      ||
T Consensus       292 WD  293 (293)
T d1p22a2         292 WD  293 (293)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-28  Score=233.36  Aligned_cols=264  Identities=17%  Similarity=0.279  Sum_probs=212.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         196 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      .|+|++  ++|++||+|+.||.|++||+.++++++.+.+|.+.|++++|  ++++|++|+.|+.|++|++..+.......
T Consensus        17 ~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          17 GVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             CEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence            477765  57999999999999999999999999999999999999987  67899999999999999999998877776


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc---eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCc
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH---QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPAL  352 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  352 (622)
                      .......... +... .++++..++.+.+|+.....   ....+..+...+....+  ....+++++.|+.+++||++++
T Consensus        93 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~  168 (293)
T d1p22a2          93 HHCEAVLHLR-FNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC  168 (293)
T ss_dssp             CCCSCEEEEE-CCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred             cccccccccc-cccc-ceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeecCCCC
Confidence            5444333333 3333 57888899999999997654   33445566666665554  4568889999999999999999


Q ss_pred             cEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         353 ELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       353 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      +.+..+.++...+..+.++  +.++++++.|+.|++||++.         ...+..+..+...    ...+++++.+|++
T Consensus       169 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~----v~~~~~~~~~l~s  233 (293)
T d1p22a2         169 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---------GACLRVLEGHEEL----VRCIRFDNKRIVS  233 (293)
T ss_dssp             CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT---------CCEEEEECCCSSC----EEEEECCSSEEEE
T ss_pred             cEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccc---------ceeeeeeccccee----eeeccccceEEEE
Confidence            9999999999999888775  56899999999999999983         3344444332221    1367889999999


Q ss_pred             eeCCCCeEEEEECCC---------CeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEee
Q psy2110         433 GSARQHALYIWEKSV---------GNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWA  486 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~  486 (622)
                      ++. ||.|++||+..         ..++..+.+|.+. |++++|+  +.+|++++ ||+|+|||
T Consensus       234 g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~-V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         234 GAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-VFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-CCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EcC-CCEEEEEECCCCccccccCCceeeEEecCCCCC-EEEEEEc--CCEEEEEecCCEEEEeC
Confidence            997 99999999643         3567889999887 9999995  56899999 99999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.3e-30  Score=255.34  Aligned_cols=321  Identities=16%  Similarity=0.095  Sum_probs=211.4

Q ss_pred             CcceEEEEccCCcEEEeccCCCeEEEEecccccee----------------------------cccCceEEeecCCceEE
Q psy2110           2 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK----------------------------ASRGNCLLVNTGDRLIR   53 (622)
Q Consensus         2 ~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~~----------------------------~~~~~~l~~~~~d~~i~   53 (622)
                      +.|.++++++  ++|+||+.|++|+|||.......                            ...+.++++++.|+.++
T Consensus        15 ~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~   92 (393)
T d1sq9a_          15 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL   92 (393)
T ss_dssp             SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred             CccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEE
Confidence            5789999875  68999999999999996543210                            01234677889999999


Q ss_pred             EeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCC-----CCEEEEecCCCCeEEEEEcCCCce-EEEEeccCcce
Q psy2110          54 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGD-----GEYVCAGSARQHALYIWEKSVGNL-VKILHGTKGEL  127 (622)
Q Consensus        54 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-----~~~l~~~~~~~~~i~vwd~~~~~~-~~~~~~~~~~v  127 (622)
                      +|++.......... ......+........+..++|+++     +.++++++.+ +.+++|++..... ...+..+....
T Consensus        93 ~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~  170 (393)
T d1sq9a_          93 FYRITREDETKKVI-FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-GTTYIWKFHPFADESNSLTLNWSPT  170 (393)
T ss_dssp             EEEEEECTTTCCEE-EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-SCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             EEEccCCCceeeee-ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC-CcEEEEEeecCCcccceeeeeeccc
Confidence            99975432111000 001111122223334456677665     4678888865 9999999853211 11111111111


Q ss_pred             eEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC
Q psy2110         128 LLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT  207 (622)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  207 (622)
                      ................+.+++|+|++ +||+|+.||+|+|||+.+++.+..+......     ......|.+++|+|+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l-----~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         171 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM-----INNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--------CCCCCEEEEEECSSTT
T ss_pred             eecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccc-----ccccceEEEcccccccc
Confidence            11111112222233345799999998 8999999999999999998776655432110     01124699999999999


Q ss_pred             EEEEEeCCC---eEEEEEcCCCceEEEec-------------cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q psy2110         208 LLAVGCNDG---RIVLWDFLTRGIAKIIS-------------AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECE  271 (622)
Q Consensus       208 ~l~~~~~dg---~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~  271 (622)
                      +|++|+.|+   .|++||+.+++.+..+.             +|.+.|++++|+|++++|++++.|++|++||+.+++++
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            999999886   48999999988877664             79999999999999999999999999999999999999


Q ss_pred             EEEe-CCCCeE----EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110         272 QKYR-FPSPIL----KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLV  346 (622)
Q Consensus       272 ~~~~-~~~~v~----~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  346 (622)
                      +.+. |...|.    .++|+|++..+. ++   +...++...........            ....+.+++++.|+.|++
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~d~~ir~  388 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLA-EP---GVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDRSIRW  388 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCS-SC---CEEEEEEECTTTSBSTT------------CTTSCEEEEEETTTEEEE
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEE-Ec---ccceEEECccCceeccc------------cCCCCEEEEEEcCCeEEE
Confidence            9998 655554    578888887432 11   22222222221111100            112456788889999999


Q ss_pred             Ee
Q psy2110         347 LS  348 (622)
Q Consensus       347 ~d  348 (622)
                      |.
T Consensus       389 ~~  390 (393)
T d1sq9a_         389 FR  390 (393)
T ss_dssp             EE
T ss_pred             Ee
Confidence            85

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=4.4e-30  Score=252.73  Aligned_cols=332  Identities=11%  Similarity=0.112  Sum_probs=230.0

Q ss_pred             ceEEEEcc-CCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhcccc
Q psy2110           4 SIVASFDR-RGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKT   82 (622)
Q Consensus         4 V~~~~fsp-dg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (622)
                      +.+-.||| ||+++|+++ +|.|.|||+..+...                                        ...+..
T Consensus         5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~----------------------------------------~~~~~~   43 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL----------------------------------------KVPEPL   43 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE----------------------------------------ECSCCS
T ss_pred             hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEE----------------------------------------EccCCC
Confidence            34678999 999999976 489999986432211                                        012334


Q ss_pred             ceeEEEEcCCCCEEEEecCCC-CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC
Q psy2110          83 MWKKCCFSGDGEYVCAGSARQ-HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN  161 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~~-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~  161 (622)
                      .+.+++|||||++|++++.++ ..|++||+.+++.. .+..|...+                 .+++|+||+++|++++.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v-----------------~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNV-----------------FAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSE-----------------EEEEECTTSSEEEEEET
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceE-----------------Eeeeecccccccceecc
Confidence            567899999999999877654 37999999877654 567788877                 59999999999999999


Q ss_pred             CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe----------CCCeEEEEEcCCCceEEE
Q psy2110         162 DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC----------NDGRIVLWDFLTRGIAKI  231 (622)
Q Consensus       162 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----------~dg~i~iwd~~~~~~~~~  231 (622)
                      ++.+++|++.+++....+..+..           .+.+++|+|+|++|+.+.          .++.+++|++.+++... 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-  173 (360)
T d1k32a3         106 RFEIMTVDLETGKPTVIERSREA-----------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-  173 (360)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSS-----------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-
T ss_pred             ccccccccccccceeeeeecccc-----------cccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-
Confidence            99999999999887776665542           367899999999998654          34568999998876544 


Q ss_pred             eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         232 ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       232 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      +..|...+..++|+|||++|++++.++.+.+|+.......  +.....+..+.++++..                     
T Consensus       174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~---------------------  230 (360)
T d1k32a3         174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS--FEVVSKPFVIPLIPGSP---------------------  230 (360)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE--CCSCBEEEEEESSTTCC---------------------
T ss_pred             ecccccccccccccCCCCEEEEEeCCCceEccccccccee--eccccceEEEecccCcc---------------------
Confidence            4556788899999999999999999999999997654321  11112222222222211                     


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEecC-----CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC---CEEEEEeCC
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSK-----GKVLVLSCPALELKASFKASTTAIKSIEFARRG---NCLLVNTGD  383 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~d  383 (622)
                                  ..+.+++++..++++..+     ..+..++...+.. ..+..+...+..+.+.+.+   .++++++.+
T Consensus       231 ------------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (360)
T d1k32a3         231 ------------NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEK  297 (360)
T ss_dssp             ------------CGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             ------------ccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCC
Confidence                        111223333332222211     1233334343332 2344444555555555544   357778889


Q ss_pred             CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC
Q psy2110         384 RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       384 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  458 (622)
                      +.|++||+..          .....+.     ..+..++|||||++|++++. ||.|++||++.++....+..+.
T Consensus       298 ~~i~~~d~~~----------~~~~~~~-----~~v~~~~~SpDG~~l~~~~~-Dg~i~v~d~~~~~~~~~~~~d~  356 (360)
T d1k32a3         298 GVLLKYDVKT----------RKVTEVK-----NNLTDLRLSADRKTVMVRKD-DGKIYTFPLEKPEDERTVETDK  356 (360)
T ss_dssp             EEEEEEETTT----------CCEEEEE-----EEEEEEEECTTSCEEEEEET-TSCEEEEESSCTTSCEECCCCS
T ss_pred             CEEEEEECCC----------CeEEEec-----CCcCEEEECCCCCEEEEEEC-CCeEEEEECCCCCcceEEEecc
Confidence            9999999873          1122221     34578899999999999997 9999999999998877776544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=3.4e-29  Score=251.29  Aligned_cols=359  Identities=11%  Similarity=-0.012  Sum_probs=253.9

Q ss_pred             EeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE--EEEe
Q psy2110          44 LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV--KILH  121 (622)
Q Consensus        44 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~--~~~~  121 (622)
                      ++.+.++.|.+||..            +.+.+..+..+..+..++|||||++|++++.+ +.|++||+.+++..  ..+.
T Consensus        36 v~~~d~g~v~v~D~~------------t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~d-g~v~~~d~~t~~~~~~~~i~  102 (432)
T d1qksa2          36 VTLRDAGQIALIDGS------------TYEIKTVLDTGYAVHISRLSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIK  102 (432)
T ss_dssp             EEETTTTEEEEEETT------------TCCEEEEEECSSCEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEE
T ss_pred             EEEcCCCEEEEEECC------------CCcEEEEEeCCCCeeEEEECCCCCEEEEEcCC-CCEEEEEeeCCCceEEEEEe
Confidence            455555555555554            22233333344456789999999999998864 99999999887643  3332


Q ss_pred             ---ccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecCCcccccccccccCCCcccccccccce
Q psy2110         122 ---GTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA  197 (622)
Q Consensus       122 ---~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  197 (622)
                         +|.+.+                 .+.+|+|||++| ++++.+++|++||..+++.+..+..+........+......
T Consensus       103 ~~~~~~~~~-----------------~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         103 IGSEARSIE-----------------TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             CCSEEEEEE-----------------ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             cCCCCCCeE-----------------EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence               344433                 467889999976 67888999999999999888877765544333344444567


Q ss_pred             EEEEECCCCCEEEE-EeCCCeEEEEEcCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCcEEEEE
Q psy2110         198 VTCAFNKRGTLLAV-GCNDGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTD-NNVCIWDVLTGECEQKY  274 (622)
Q Consensus       198 ~~~~~s~~g~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~  274 (622)
                      ..+.++|+|+.+++ ...++.|.+|+..+.+...... .+...+..++|+|+|+++++++.+ +.+.++|..+++....+
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~  245 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE  245 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence            78899999987654 5567999999998877554333 345678899999999988887764 57999999999888877


Q ss_pred             eCC------CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEe
Q psy2110         275 RFP------SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLS  348 (622)
Q Consensus       275 ~~~------~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  348 (622)
                      ...      .......+...+.........++.+.+|......    ...+...+....+++++..+++++.+...++|.
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             ECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             ccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence            632      2333444443333333333347788888765432    234555678889999999999999999999998


Q ss_pred             CCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCC
Q psy2110         349 CPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGE  428 (622)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  428 (622)
                      ..+..      .|.....++++ ||++.|++++.|+.+++|++.+....            .  .+...+..++|||||+
T Consensus       322 ~~~~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l------------~--~~~~~v~~~~fS~DG~  380 (432)
T d1qksa2         322 DATLN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI------------T--EGQPRVVQGEFNKDGT  380 (432)
T ss_dssp             ECTTC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC------------C--SSCCEEEEEEECTTSS
T ss_pred             cccCC------CCCCeeeEEEE-EechhhcccccCCceEeccccccccc------------C--CCCCcEEEeEECCCCC
Confidence            65432      23333345555 89999999999999999998742111            1  1223456789999999


Q ss_pred             eEEEeeC----CCCeEEEEECCCCeeEEEEecC
Q psy2110         429 YVCAGSA----RQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       429 ~l~~~~~----~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      +|+.+..    +++.|.|||..++++...+++.
T Consensus       381 ~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         381 EVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            9966542    3689999999999998888775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=5.2e-29  Score=249.91  Aligned_cols=359  Identities=11%  Similarity=0.028  Sum_probs=262.5

Q ss_pred             EEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcEEEEecCCccc
Q psy2110          96 VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGI  175 (622)
Q Consensus        96 l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~  175 (622)
                      +++.+ ++|.|.|||..+++++..+..|.. +                 ..++|||||++|++++.|++|++||+.+++.
T Consensus        35 ~v~~~-d~g~v~v~D~~t~~v~~~~~~g~~-~-----------------~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~   95 (432)
T d1qksa2          35 SVTLR-DAGQIALIDGSTYEIKTVLDTGYA-V-----------------HISRLSASGRYLFVIGRDGKVNMIDLWMKEP   95 (432)
T ss_dssp             EEEET-TTTEEEEEETTTCCEEEEEECSSC-E-----------------EEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEEc-CCCEEEEEECCCCcEEEEEeCCCC-e-----------------eEEEECCCCCEEEEEcCCCCEEEEEeeCCCc
Confidence            35555 569999999999999999988754 4                 4999999999999999999999999988764


Q ss_pred             ccccccccCCCcccccccccceEEEEECCCCCEE-EEEeCCCeEEEEEcCCCceEEEeccC-----------CcCeeEEE
Q psy2110         176 AKIISAHMHPEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLTRGIAKIISAH-----------MHPVCSIS  243 (622)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~~~  243 (622)
                      ..........      .+...+.+.+|+|||++| ++++.++.|++||..+++.+..+..|           ......+.
T Consensus        96 ~~~~~i~~~~------~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2          96 TTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             CEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             eEEEEEecCC------CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence            3322211110      001245666789999986 67778999999999999988776543           34566788


Q ss_pred             EcCCCCEEE-EEeCCCcEEEEECCCCcEEE--EEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC--
Q psy2110         244 WSRNGYKII-SASTDNNVCIWDVLTGECEQ--KYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE--  318 (622)
Q Consensus       244 ~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--  318 (622)
                      ++++|..++ +...++.|.+||..+++...  .+.....+..++|+|+++++++++..++.+.++|..+......+..  
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~  249 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  249 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence            999998765 45557899999999887554  4456778899999999999888888899999999988766544332  


Q ss_pred             ---CCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccc
Q psy2110         319 ---DSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEV  394 (622)
Q Consensus       319 ---~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~  394 (622)
                         +........+...+...++.. .++.+.+|+.....    ...|...+....++|++..+++++.+...++|.... 
T Consensus       250 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-  324 (432)
T d1qksa2         250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-  324 (432)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-
T ss_pred             cccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeeccc-
Confidence               233333444444444444433 37789999876543    235666788999999999999999999999998652 


Q ss_pred             cccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEE
Q psy2110         395 LNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPII  474 (622)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l  474 (622)
                              ...        ......++++ ||++.+++++. |+.+++|++.++..   +..|... |.+++|+|||++|
T Consensus       325 --------~~~--------~~~~~~sv~v-pDg~~la~~s~-d~~~k~w~~~~~~~---l~~~~~~-v~~~~fS~DG~~v  382 (432)
T d1qksa2         325 --------LNP--------EAEISGSVAV-FDIKAMTGDGS-DPEFKTLPIAEWAG---ITEGQPR-VVQGEFNKDGTEV  382 (432)
T ss_dssp             --------TCS--------SHHHHTCEEE-EEGGGCCCSSS-CCCEEEECHHHHHT---CCSSCCE-EEEEEECTTSSEE
T ss_pred             --------CCC--------CCCeeeEEEE-Eechhhccccc-CCceEecccccccc---cCCCCCc-EEEeEECCCCCEE
Confidence                    111        0111123454 89999999997 88999999865533   2345555 8999999999977


Q ss_pred             EEEe------CCcEEEeecCCccccc------ccCCCCceeccc
Q psy2110         475 ASIS------SGVVSLWAQNQVENWS------AFAPDFKELDEN  506 (622)
Q Consensus       475 ~s~~------dg~v~iw~~~~~~~~~------~~s~~~~~l~~~  506 (622)
                      +.+.      +|.|.|||..+.+.|.      .++|+|+....|
T Consensus       383 ~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~~~tp~G~~~~~~  426 (432)
T d1qksa2         383 WFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYN  426 (432)
T ss_dssp             EEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEEEHHH
T ss_pred             EEEEecCCCCCCcEEEEECCCceEEeEecCCCccCCCeeEEEEE
Confidence            5442      4789999998776553      556777765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=245.46  Aligned_cols=285  Identities=13%  Similarity=0.150  Sum_probs=204.9

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCce------EEEEeccCcceeEEEEeecCccccccceeEEEEcC-C
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNL------VKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK-R  152 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~-d  152 (622)
                      |...|.++++++  ++|++++.| ++|+|||..+.+.      ......|...+.           .......+..+. +
T Consensus        13 H~~~I~~v~~~~--~~l~S~S~D-~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~   78 (393)
T d1sq9a_          13 HDADIFSVSACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-----------HVDVLQAIERDAFE   78 (393)
T ss_dssp             SSSCEEEEEECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEE-----------EEEEEEEEETTTEE
T ss_pred             ccCccEEEEEeC--CEEEEEECC-CeEEEEECCCCCCCcccceeEeeeeccCCce-----------EeeeEeeeccCCCC
Confidence            445677888764  699999975 9999999865532      222223332221           111111222222 3


Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCC-----CCEEEEEeCCCeEEEEEcCCCc
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKR-----GTLLAVGCNDGRIVLWDFLTRG  227 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~iwd~~~~~  227 (622)
                      +.++++++.||.|++|++........+..+......... ....+..++|.++     +.++++++.||.+++|++....
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~  157 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA  157 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeecc-CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCC
Confidence            457889999999999998765544333322211111111 1123566777665     4688999999999999985321


Q ss_pred             ------------------eEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEE
Q psy2110         228 ------------------IAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILK  282 (622)
Q Consensus       228 ------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~  282 (622)
                                        .......+...+.+++|+|++ +|++|+.|++|++||+.+++++..+.       |..+|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             cccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                              111122455678999999998 89999999999999999999877654       5678999


Q ss_pred             EEEeCCCCeEEEEeeCCC---cEEEEEecCCceeecc-------------cCCCCceEEEEEeeCCCEEEEEecCCeEEE
Q psy2110         283 VQFHPRNDHMFLVCPMRH---AAVLVDTDGDHQIVPI-------------DEDSDLSIVASFDRRGQHVVTGNSKGKVLV  346 (622)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  346 (622)
                      ++|+|+++ ++++++.|+   .+++||+.++..+..+             .+|...|++++|+|++++|++++.|++|++
T Consensus       237 l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         237 VKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  315 (393)
T ss_dssp             EEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             cccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE
Confidence            99999998 567777665   4899999887665544             368899999999999999999999999999


Q ss_pred             EeCCCccEEEEEecCCCCEE----EEEEcCCCCEEEEEe
Q psy2110         347 LSCPALELKASFKASTTAIK----SIEFARRGNCLLVNT  381 (622)
Q Consensus       347 ~d~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~  381 (622)
                      ||+.+++++.++++|...|.    .++|++++..+++++
T Consensus       316 Wd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         316 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999999999988775    488999998776443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=239.39  Aligned_cols=290  Identities=10%  Similarity=0.073  Sum_probs=211.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE---EEeccCCcCeeEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE
Q psy2110         195 SLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA---KIISAHMHPVCSISWSRN-GYKIISASTDNNVCIWDVLTGEC  270 (622)
Q Consensus       195 ~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~  270 (622)
                      ..|++++|+|++++||+|+.||+|++||+.++...   ....+|.++|.+++|+++ +.+|++|+.|+.|++|++..+..
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            35999999999999999999999999999876543   233469999999999986 45899999999999999998877


Q ss_pred             EEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce----eeccc--CCCCceEEEEEeeCCCEEEEEecCCe
Q psy2110         271 EQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ----IVPID--EDSDLSIVASFDRRGQHVVTGNSKGK  343 (622)
Q Consensus       271 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~  343 (622)
                      ..... +........+.+.+...+++++.++.+++||++....    .....  ..........+.+.+..+++++.++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  171 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQ  171 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTE
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCc
Confidence            76665 3333333333333445788999999999999864322    11111  12233445677888999999999999


Q ss_pred             EEEEeCCCccEE---EEEecCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeee---cc-ccc
Q psy2110         344 VLVLSCPALELK---ASFKASTTAIKSIEFA-RRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ---DL-VNK  415 (622)
Q Consensus       344 i~i~d~~~~~~~---~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~-~~~  415 (622)
                      |++|++...+..   .....+...+.+..+. .++..+++++.||.+.+|+....................   .. ...
T Consensus       172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            999999866532   2233444556665554 467789999999999999987432221111111111111   11 122


Q ss_pred             eeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeec
Q psy2110         416 TMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQ  487 (622)
Q Consensus       416 ~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~  487 (622)
                      ..+.+++|+|++++||+|+. ||.|+|||+.+++.+..+..++.  +..++|+|++++|++++ |+++++|..
T Consensus       252 ~~v~~l~~sp~~~~lasg~~-Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSS--SEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ccceeEEecCCccEEEEECC-CCEEEEEECCCCcEEEEecCCCC--CEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            34678999999999999997 99999999999999988876543  56688889999999887 888888765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.2e-27  Score=240.80  Aligned_cols=337  Identities=12%  Similarity=0.089  Sum_probs=238.0

Q ss_pred             EEcCCCC--EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcE
Q psy2110          88 CFSGDGE--YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI  165 (622)
Q Consensus        88 ~~sp~~~--~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  165 (622)
                      .++.|.+  ++++.+ ++|+|+|||+.+++.+.++..|.. +                 ..++|||||++|++++.|++|
T Consensus        25 ~~~~d~~~~~~V~~~-~dg~v~vwD~~t~~~~~~l~~g~~-~-----------------~~vafSPDGk~l~~~~~d~~v   85 (426)
T d1hzua2          25 LNDLDLPNLFSVTLR-DAGQIALVDGDSKKIVKVIDTGYA-V-----------------HISRMSASGRYLLVIGRDARI   85 (426)
T ss_dssp             CSCCCGGGEEEEEET-TTTEEEEEETTTCSEEEEEECCSS-E-----------------EEEEECTTSCEEEEEETTSEE
T ss_pred             cccCCCCeEEEEEEc-CCCEEEEEECCCCcEEEEEeCCCC-e-----------------eEEEECCCCCEEEEEeCCCCE
Confidence            3555543  334455 469999999999999999998864 4                 499999999999999999999


Q ss_pred             EEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCe-----
Q psy2110         166 VLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPV-----  239 (622)
Q Consensus       166 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v-----  239 (622)
                      ++||+.+++...........      .+...+.+++|+|||++++++ ..++.+++||..++.+...+..|...+     
T Consensus        86 ~vwd~~t~~~~~~~~i~~~~------~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~  159 (426)
T d1hzua2          86 DMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  159 (426)
T ss_dssp             EEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EEEEccCCceeEEEEEeCCC------CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee
Confidence            99999998755433221111      011345677889999987555 478999999999998888776655443     


Q ss_pred             ------eEEEEcCCCCEEEEEeCC-CcEEEEECCCCc--EEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         240 ------CSISWSRNGYKIISASTD-NNVCIWDVLTGE--CEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       240 ------~~~~~s~~~~~l~s~~~d-~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                            ..+.+++++..++....+ +.+.+++.....  ....+.+...+..+.++|++++++++......+.+++..+.
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence                  445555666555544433 455556555544  23344577788999999999998888888999999999988


Q ss_pred             ceeecccCC--CCceEEEEEeeCCCE-E--EEEecCCeEEEEeCCC-------ccEEEEEecCCCCEEEEEEcCCCCEEE
Q psy2110         311 HQIVPIDED--SDLSIVASFDRRGQH-V--VTGNSKGKVLVLSCPA-------LELKASFKASTTAIKSIEFARRGNCLL  378 (622)
Q Consensus       311 ~~~~~~~~~--~~~~~~~~~~~~~~~-l--~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~  378 (622)
                      .........  ........+...+.. +  +....++.+.+|+...       ++....+.+|...+..++|+|++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence            766544322  222223333333322 2  2334577888887653       478889999999999999999999999


Q ss_pred             EE-------eCCCcEEEEecccccccCCCCCCCcceeee------c-cccceeeeeEEEcCCCCeEEEee----CCCCeE
Q psy2110         379 VN-------TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQ------D-LVNKTMWKKCCFSGDGEYVCAGS----ARQHAL  440 (622)
Q Consensus       379 ~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~spdg~~l~~~~----~~d~~i  440 (622)
                      +.       +.+++|+|||+.+.         +....+.      . ..+...+..++|||||++|+.+.    ..++.|
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~---------~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i  390 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNL---------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL  390 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCT---------TSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEE
T ss_pred             EeecCCCCcccCCEEEEEECCCC---------CcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeE
Confidence            63       34789999999842         2222221      1 12233456789999999885432    247899


Q ss_pred             EEEECCCCeeEEEEecCC
Q psy2110         441 YIWEKSVGNLVKILHGTK  458 (622)
Q Consensus       441 ~iwd~~~~~~~~~~~~~~  458 (622)
                      +|||.++++....+.++.
T Consensus       391 ~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         391 VVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             EEEETTTTEEEEEECCTT
T ss_pred             EEEECCCCeEEEEECCCC
Confidence            999999999999998875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.1e-29  Score=240.98  Aligned_cols=284  Identities=14%  Similarity=0.095  Sum_probs=218.0

Q ss_pred             cccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceE---EEEeccCcceeEEEEeecCccccccceeEEEEcCCC-CE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLV---KILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRG-TL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~-~~  155 (622)
                      +...|.+++|||++++||+|+.| |+|+|||+.++...   ....+|..+|                 .+++|+|++ .+
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~D-g~v~iwd~~~~~~~~~~~~~~~h~~~V-----------------~~v~f~~~~~~~   71 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPL-----------------LCCNFIDNTDLQ   71 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCE-----------------EEEEEEESSSEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEECC-CeEEEEEccCCCcceEEEEecCCCCCE-----------------EEEEEeCCCCCE
Confidence            34567899999999999999975 99999999766543   3334688887                 599999874 58


Q ss_pred             EEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceE----EE
Q psy2110         156 LAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIA----KI  231 (622)
Q Consensus       156 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~----~~  231 (622)
                      |++|+.||.|++|++..+........+...          ......+.++...+++++.++.+++||+.++...    ..
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEAN----------LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCC----------SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             EEEcccccceeeeecccccccccccccccc----------cccccccccccccccccccccccceeeccccccceeeecc
Confidence            999999999999999887666555444322          2345566778889999999999999998754332    22


Q ss_pred             eccC--CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE----EeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEE
Q psy2110         232 ISAH--MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK----YRFPSPILKVQFHPRNDHMFLVCPMRHAAVLV  305 (622)
Q Consensus       232 ~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~  305 (622)
                      ...+  ......+.+.+++..+++++.|+.|++||+...+....    ......+.+..+.+.....+++++.++.+.+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~  221 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEE
Confidence            2222  23445667778889999999999999999987654322    22456677778888777789999999999999


Q ss_pred             EecCCcee---------------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEE
Q psy2110         306 DTDGDHQI---------------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEF  370 (622)
Q Consensus       306 d~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  370 (622)
                      +.......               .....|...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~  300 (342)
T d1yfqa_         222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKI  300 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEE
T ss_pred             EecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEE
Confidence            98643221               112345567889999999999999999999999999999999888654 34556788


Q ss_pred             cCCCCEEEEEeCCCcEEEEecc
Q psy2110         371 ARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       371 s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      +|++++|++++.|+.+++|...
T Consensus       301 s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         301 ACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EECSSEEEEEEECTHHHHCSSS
T ss_pred             EeCCCEEEEEEcCCcEEEeeee
Confidence            8999999999999888877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.9e-28  Score=229.97  Aligned_cols=251  Identities=14%  Similarity=0.190  Sum_probs=200.9

Q ss_pred             CCcceEEEEccCCcEEEeccCCCeEEEEeccccce---------ecccCceEEeecCCceEEEeechhhhhcCCCCCCcc
Q psy2110           1 SDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL---------KASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEP   71 (622)
Q Consensus         1 t~~V~~~~fspdg~~latg~~dg~v~vwd~~~~~~---------~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~   71 (622)
                      ++.|+|++|+|    |+||+.||+|++||+.+...         ....+..+++++.|+++++|+.....          
T Consensus        13 ~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~----------   78 (287)
T d1pgua2          13 NKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE----------   78 (287)
T ss_dssp             SSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE----------
T ss_pred             CCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccc----------
Confidence            46899999998    99999999999999876432         24567788999999999999985311          


Q ss_pred             chhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC
Q psy2110          72 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK  151 (622)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~  151 (622)
                              ....+.++++++++..++++..  +.+.+|+..+++.+..+..+..                    ..++++
T Consensus        79 --------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~  128 (287)
T d1pgua2          79 --------FGSQPKVASANNDGFTAVLTND--DDLLILQSFTGDIIKSVRLNSP--------------------GSAVSL  128 (287)
T ss_dssp             --------CSSCEEEEEECSSSEEEEEETT--SEEEEEETTTCCEEEEEECSSC--------------------EEEEEE
T ss_pred             --------cccceeeeeeccCCceEEEeec--ccceeeeccceeeeeeccccce--------------------eeeeec
Confidence                    1223457899999988888763  6799999999998888775543                    446778


Q ss_pred             CCCEEEEeeCCC-cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         152 RGTLLAVGCNDG-RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       152 d~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      ++..+++++.++ .+++|++........+.....          ..+.+++|+|++++|++|+.+|.|++||+.++....
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~  198 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR----------AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT  198 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccC----------CceeEEEeccCccccccccccccccceeeccccccc
Confidence            888888888765 799999876554443332211          358999999999999999999999999999887654


Q ss_pred             -EeccCCcCeeEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CcEEEEEe-CCCCeEEEEEeCCCCeEEEEee
Q psy2110         231 -IISAHMHPVCSISWSRN----------GYKIISASTDNNVCIWDVLT-GECEQKYR-FPSPILKVQFHPRNDHMFLVCP  297 (622)
Q Consensus       231 -~~~~~~~~v~~~~~s~~----------~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  297 (622)
                       .+.+|...|.+++|+|.          +.+|++|+.|++|++||+++ .+.+..+. |...|.+++|+|++  .+++++
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g  276 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSG  276 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT--EEEEEE
T ss_pred             ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEE
Confidence             46789999999999874          46899999999999999977 44555554 88999999999976  478888


Q ss_pred             CCCcEEEEEe
Q psy2110         298 MRHAAVLVDT  307 (622)
Q Consensus       298 ~~~~i~~~d~  307 (622)
                      .|+.+++|++
T Consensus       277 ~D~~v~iW~i  286 (287)
T d1pgua2         277 ADACIKRWNV  286 (287)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=4.8e-27  Score=236.24  Aligned_cols=300  Identities=11%  Similarity=0.078  Sum_probs=217.6

Q ss_pred             hhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEE--e---ccCcceeEEEEeecCccccccceeEEEEc
Q psy2110          76 QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL--H---GTKGELLLDVVEFDGALDCISLAVTCAFN  150 (622)
Q Consensus        76 ~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~--~---~~~~~v~~~~~~~~~~~~~~~~v~~~~~s  150 (622)
                      ..+..+..+..++|||||++|++++.+ ++|++||+.+++.....  +   +|.+.+                 .+++|+
T Consensus        56 ~~l~~g~~~~~vafSPDGk~l~~~~~d-~~v~vwd~~t~~~~~~~~i~~~~~~~~~~-----------------~s~~~s  117 (426)
T d1hzua2          56 KVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIGIEARSVE-----------------SSKFKG  117 (426)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECCSEEEEEE-----------------ECCSTT
T ss_pred             EEEeCCCCeeEEEECCCCCEEEEEeCC-CCEEEEEccCCceeEEEEEeCCCCCcceE-----------------Eeeeec
Confidence            333444556789999999999999865 99999999998755433  2   344433                 478899


Q ss_pred             CCCCEEEEe-eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCCCce
Q psy2110         151 KRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLTRGI  228 (622)
Q Consensus       151 ~d~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~~~~  228 (622)
                      |||++|+++ ..++.+++||..++.....+..+........+........+.+++++..++.... .+.+.+++......
T Consensus       118 pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         118 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc
Confidence            999987554 5789999999999988777766544332233333344567788899888776654 45677777665543


Q ss_pred             E-EEeccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeC---CCCeEEEEEeCCCCeE--EEEeeCCCc
Q psy2110         229 A-KIISAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYRF---PSPILKVQFHPRNDHM--FLVCPMRHA  301 (622)
Q Consensus       229 ~-~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~--~~~~~~~~~  301 (622)
                      . .....+...+..+.|+|++++++++.. +..+.+++..+++.......   ........+...+...  .+....++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  277 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS  277 (426)
T ss_dssp             CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCE
T ss_pred             eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCce
Confidence            2 334467788999999999998888765 46799999999998887762   2333344444433322  333455778


Q ss_pred             EEEEEecCC-------ceeecccCCCCceEEEEEeeCCCEEEE-------EecCCeEEEEeCCCccEEEEEe--------
Q psy2110         302 AVLVDTDGD-------HQIVPIDEDSDLSIVASFDRRGQHVVT-------GNSKGKVLVLSCPALELKASFK--------  359 (622)
Q Consensus       302 i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~--------  359 (622)
                      +.+++....       +....+..|...+..++|+|++++|++       +..+++|++||+.+++...++.        
T Consensus       278 v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~  357 (426)
T d1hzua2         278 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL  357 (426)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred             EEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhccc
Confidence            888887543       556677888889999999999999995       4557899999999988665542        


Q ss_pred             -cCCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEeccc
Q psy2110         360 -ASTTAIKSIEFARRGNCLLVN-----TGDRLIRVYNHQE  393 (622)
Q Consensus       360 -~~~~~i~~~~~s~~~~~l~~~-----~~d~~i~i~d~~~  393 (622)
                       .+...|.+++|||||++++++     +.++.|+|||..+
T Consensus       358 ~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             CSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             CCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence             456679999999999987654     2478899999884

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.2e-23  Score=200.52  Aligned_cols=265  Identities=10%  Similarity=0.132  Sum_probs=214.0

Q ss_pred             EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCcEEEEecCCc
Q psy2110          95 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTR  173 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~  173 (622)
                      |+.+....+++|.+||+.+++.++++.....+                  ..++|+|||++|+ +++.++.|++||+.++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p------------------~~va~spdG~~l~v~~~~~~~i~v~d~~t~   64 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNP------------------MGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSE------------------EEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCc------------------eEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            44444334589999999999999998866543                  4899999999875 6667899999999999


Q ss_pred             ccccccccccCCCcccccccccceEEEEECCCCCEEEE-EeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEE
Q psy2110         174 GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAV-GCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKII  252 (622)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  252 (622)
                      +.+..+..+.            .+..++|+++++.+++ +..++.+.+|+..+++....+..+ ....++.|+|++..++
T Consensus        65 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~  131 (301)
T d1l0qa2          65 NVIATVPAGS------------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (301)
T ss_dssp             EEEEEEECSS------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             ceeeeeeccc------------cccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeee
Confidence            8887776553            3578999999986655 456788999999999888888755 5678899999999876


Q ss_pred             EE-eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeC
Q psy2110         253 SA-STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRR  331 (622)
Q Consensus       253 s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  331 (622)
                      .+ ..++.+.+|+..+++....+.....+..+.++|++..++++......+.+++............ ......++++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  210 (301)
T d1l0qa2         132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE  210 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred             eeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccc-cCCcceeecccc
Confidence            55 4577899999999999999998888999999999998877777777788888777655554443 345667899999


Q ss_pred             CCEEEEEec---CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecc
Q psy2110         332 GQHVVTGNS---KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLL-VNTGDRLIRVYNHQ  392 (622)
Q Consensus       332 ~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i~d~~  392 (622)
                      +..++++..   ++.|++||+.+++.+..+..+ ..+.+++|+|||++|+ +++.++.|++||+.
T Consensus       211 g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            998876543   468999999999998887765 5679999999999875 56678999999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1e-23  Score=201.16  Aligned_cols=273  Identities=10%  Similarity=0.116  Sum_probs=219.6

Q ss_pred             EEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEeccC
Q psy2110         157 AVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKIISAH  235 (622)
Q Consensus       157 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~  235 (622)
                      ++++.|++|.+||+.+++.+..+....            .+..++|+|||++|+ +++.++.|++||+.+++.+..+..+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~------------~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~   73 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS------------NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG   73 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS------------SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC------------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc
Confidence            456788999999999998888776542            357899999999875 5667899999999999999988877


Q ss_pred             CcCeeEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee
Q psy2110         236 MHPVCSISWSRNGYKIISA-STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV  314 (622)
Q Consensus       236 ~~~v~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  314 (622)
                      . .+..++|++++.+++++ ..++.+.+|+..+++....+........+.++|++..+++++..+..+.+|+..+.....
T Consensus        74 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2          74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (301)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             c-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee
Confidence            5 56899999999876655 456789999999999999999888899999999999988999999999999999887777


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecC-CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEe
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSK-GKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG---DRLIRVYN  390 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~i~d  390 (622)
                      .+..+. ....+++++++..+++++.+ +.+.+|+....+....+..+ .....++|+++++.+++++.   ++.|++||
T Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         153 TVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             EEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             ecccCC-CceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeee
Confidence            666543 46788999999988887765 67778887777766666554 55778999999998877643   46799999


Q ss_pred             cccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  456 (622)
                      +.+         .+.+..+..   ......++|||||++|++++..++.|++||+++++++..+..
T Consensus       231 ~~t---------~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         231 TGT---------NKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TTT---------TEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cCC---------CeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            873         333333332   233467899999999865554589999999999999988864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=8.1e-25  Score=213.30  Aligned_cols=316  Identities=13%  Similarity=0.041  Sum_probs=233.8

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEecc-CcceeEEEEeecCccccccceeEEEEcCCCCEEE-EeeCCCc
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT-KGELLLDVVEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGR  164 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~  164 (622)
                      ++|++++++|++++.+ ++|.+||+.+++++++++.+ ....                 .+++|+|||++++ +++.++.
T Consensus         2 ~a~~~~~~~l~~~~~~-~~v~v~D~~t~~~~~t~~~~~~~~p-----------------~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGP-----------------GTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSS-----------------CEEEECTTSSEEEEEETTTTE
T ss_pred             ccCCCCCcEEEEEcCC-CEEEEEECCCCCEEEEEEcCCCCCc-----------------ceEEECCCCCEEEEEECCCCc
Confidence            4789999999999976 89999999999999988753 3333                 4999999999875 5567899


Q ss_pred             EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------------CCCeEEEEEcCCCceEEEe
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------------NDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~dg~i~iwd~~~~~~~~~~  232 (622)
                      |++||+.+++....+........     ....+..++|+|||+++++++            .++.+.+|+..+++....+
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~-----~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGE-----VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTE-----EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             EEEEeCccCeeeeeecccccccc-----cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            99999999887766544322110     001245689999999988765            4678899999887765444


Q ss_pred             ccC--CcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCC
Q psy2110         233 SAH--MHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGD  310 (622)
Q Consensus       233 ~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  310 (622)
                      ..+  ...+..+.+++++..++++   +.+.+|++.+++....+........+.++|++..+++....++.+.+++... 
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  214 (346)
T d1jmxb_         139 RTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA-  214 (346)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE-
T ss_pred             EeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeee-
Confidence            322  3456667788888765543   5689999999999999887777778888999887777776666666655321 


Q ss_pred             ceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEE-EecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy2110         311 HQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKAS-FKASTTAIKSIEFARRGNCLLVNTGDRLIRVY  389 (622)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~  389 (622)
                                      .+......++++..++.+.+|+..++..... +..+...+..+.+++++.++++... +.|++|
T Consensus       215 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~  277 (346)
T d1jmxb_         215 ----------------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKY  277 (346)
T ss_dssp             ----------------EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEE
T ss_pred             ----------------eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEE
Confidence                            1223344555666677899999998876544 5577888999999999988877664 579999


Q ss_pred             ecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCC
Q psy2110         390 NHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKG  459 (622)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  459 (622)
                      |...         .+.+..+..   ...+.+++|||||++|++++. ++.|+|||..+++.+..+..+.+
T Consensus       278 d~~~---------~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~-d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         278 DLKQ---------RKLIKAANL---DHTYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ETTT---------TEEEEEEEC---SSCCCEEEECSSSSCEEEESB-SSEEEEEETTTTEEEEEEECSSS
T ss_pred             ECCC---------CcEEEEEcC---CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECccCCEEEEEECCCC
Confidence            9873         333333332   234568999999999999997 89999999999999999986654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.7e-24  Score=208.67  Aligned_cols=305  Identities=13%  Similarity=0.097  Sum_probs=221.8

Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEE-EEeeCCCcEEEEecCC
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLL-AVGCNDGRIVLWDFLT  172 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~~  172 (622)
                      +|+++++.+ ++|.|||+.+++.+..+..+....               .+.+++|+|||++| ++++.++.|.+||+.+
T Consensus         2 ~~~vt~~~d-~~v~v~D~~s~~~~~~i~~~~~~~---------------~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           2 DYILAPARP-DKLVVIDTEKMAVDKVITIADAGP---------------TPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETT-TEEEEEETTTTEEEEEEECTTCTT---------------CCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCC-CEEEEEECCCCeEEEEEECCCCCC---------------CccEEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            578898875 899999999999999987654311               01489999999987 4667889999999999


Q ss_pred             cccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------------CCCeEEEEEcCCCceEEEeccCCcCee
Q psy2110         173 RGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------------NDGRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      ++.+..+..+......      ..+..++|+|++++++++.            .+..+.+||..+++....+..+ ..+.
T Consensus        66 ~~~~~~~~~~~~~~~~------~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~  138 (337)
T d1pbyb_          66 GETLGRIDLSTPEERV------KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQIT  138 (337)
T ss_dssp             CCEEEEEECCBTTEEE------ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCC
T ss_pred             CcEEEEEecCCCcccc------cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCce
Confidence            9888777655322110      1234689999999998875            3577899999999988888754 5688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCC
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS  320 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  320 (622)
                      +++|++||+++++++  +.+.+||..+++....+..........+.|++..+...+...+....+..             
T Consensus       139 ~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  203 (337)
T d1pbyb_         139 MLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY-------------  203 (337)
T ss_dssp             CEEECTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEE-------------
T ss_pred             EEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeee-------------
Confidence            999999999999986  45789999999988888755444444555655443333333332222221             


Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCC
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA-SFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK  399 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~  399 (622)
                            ....+......+..++.+.+|+..++.... .+..+...+..+.+++++.+++.+  ++.|++||+..      
T Consensus       204 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~------  269 (337)
T d1pbyb_         204 ------TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK------  269 (337)
T ss_dssp             ------EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT------
T ss_pred             ------eeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC------
Confidence                  111122222233445679999999887654 455677888899999999988766  47899999983      


Q ss_pred             CCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         400 DGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                         ...+..+.   ....+.+++|+|||++|++++. ++.|+|||..+++.+..+..+
T Consensus       270 ---~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         270 ---NASIKRVP---LPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             ---TEEEEEEE---CSSCCCEEEECTTSCEEEEESB-SSEEEEEETTTCCEEEEEECG
T ss_pred             ---CcEEEEEc---CCCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcEEEEEECC
Confidence               33444443   2234567899999999999987 899999999999999988754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=3.2e-23  Score=201.84  Aligned_cols=294  Identities=11%  Similarity=0.011  Sum_probs=211.7

Q ss_pred             EEEccCCcEEEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeechhhhhcCCCCCCccchhhhhhccccceeE
Q psy2110           7 ASFDRRGQHVVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK   86 (622)
Q Consensus         7 ~~fspdg~~latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (622)
                      ++|+++++||++++.+++|.|||+.+.++.                +...+                     .+...+.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~----------------~t~~~---------------------~~~~~p~~   44 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVY----------------KSCVM---------------------PDKFGPGT   44 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEE----------------EEEEC---------------------SSCCSSCE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEE----------------EEEEc---------------------CCCCCcce
Confidence            589999999999999999999998654432                11111                     11122357


Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee------
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC------  160 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------  160 (622)
                      ++|+|||+++++++..++.|++||+.+++.+..+........           ....+..++|+|||+++++++      
T Consensus        45 l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~-----------~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-----------VGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE-----------EEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc-----------cCCceEEEEEecCCCEEEEEecCCcce
Confidence            999999999876655569999999999999887765443221           011235889999999988765      


Q ss_pred             ------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc
Q psy2110         161 ------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA  234 (622)
Q Consensus       161 ------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~  234 (622)
                            .++.+.+|+..+++....+..+..+         ..+..+.+++++++++++   +.+.+|++.+++....+..
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  181 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---------RQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPL  181 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECC---------SSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECS
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeecc---------CceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEec
Confidence                  4678999999888766655443322         124456778888766543   5689999999888887765


Q ss_pred             CCcCeeEEEEcCCCCE--------------------------EEEEeCCCcEEEEECCCCcEEEEEe--CCCCeEEEEEe
Q psy2110         235 HMHPVCSISWSRNGYK--------------------------IISASTDNNVCIWDVLTGECEQKYR--FPSPILKVQFH  286 (622)
Q Consensus       235 ~~~~v~~~~~s~~~~~--------------------------l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~  286 (622)
                      +. ....+.++|++..                          ++++..++.+.+||+.++.......  +...+..+.++
T Consensus       182 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (346)
T d1jmxb_         182 RN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  260 (346)
T ss_dssp             TT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             CC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEe
Confidence            43 2333444444432                          2233344568889998887665443  67788899999


Q ss_pred             CCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCC
Q psy2110         287 PRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTA  364 (622)
Q Consensus       287 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  364 (622)
                      +++..++...  .+.+.+||..+.+.+..+.. ...+.+++|+|||+++++++.++.|++||+.+++.+.+++.+.+.
T Consensus       261 ~~~~~~~~~~--~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         261 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CCCCEEEEec--CCeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            9988765443  45799999998887766653 446889999999999999999999999999999999998865443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.3e-22  Score=194.86  Aligned_cols=291  Identities=9%  Similarity=0.029  Sum_probs=205.2

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEE-EEeCCCeEEEEEcCCCceEEEe
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLA-VGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      .+|++++.|++|++||+.+++.+..+..+...         ..+..++|+|||++++ +++.++.|.+||+.+++.+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~---------~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~   72 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---------PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---------TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCC---------CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence            48999999999999999999888877654322         1356789999999875 5677899999999999998887


Q ss_pred             ccCC-----cCeeEEEEcCCCCEEEEEe------------CCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEE
Q psy2110         233 SAHM-----HPVCSISWSRNGYKIISAS------------TDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLV  295 (622)
Q Consensus       233 ~~~~-----~~v~~~~~s~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  295 (622)
                      ..+.     ..+..++|+|++++++++.            .+..+.+||..+++....+.....+..++|+|+++.+++.
T Consensus        73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred             ecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE
Confidence            6553     3456899999999998775            3577999999999999999988889999999999976654


Q ss_pred             eeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC-CeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC
Q psy2110         296 CPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK-GKVLVLSCPALELKASFKASTTAIKSIEFARRG  374 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  374 (622)
                      +   +...+||..+......+..+.... ...+++++..+...... +....++                   .....+.
T Consensus       153 ~---~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  209 (337)
T d1pbyb_         153 G---RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPF-------------------YTARKDI  209 (337)
T ss_dssp             S---SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEE-------------------EEEBTTS
T ss_pred             c---CCcceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeee-------------------eeeeecc
Confidence            3   457789988876665554433221 22334444333222211 1111111                   1112222


Q ss_pred             CEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEE
Q psy2110         375 NCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKIL  454 (622)
Q Consensus       375 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~  454 (622)
                      ..+...+.++.+.+|+...         ... ..............+.++|++.+++.+.   +.|++||+.+++.+..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         210 DPADPTAYRTGLLTMDLET---------GEM-AMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV  276 (337)
T ss_dssp             CTTSGGGEEEEEEEEETTT---------CCE-EEEEEEECSSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEE
T ss_pred             ceeeecccCccEEEEEcCC---------CcE-EEEEecCCCcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEE
Confidence            2233334456788888763         111 1111112223345678999999987664   58999999999999888


Q ss_pred             ecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCcc
Q psy2110         455 HGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       455 ~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~  491 (622)
                      .... . +.+++|+|+|++|++++ |++|++||....+
T Consensus       277 ~~~~-~-~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         277 PLPH-S-YYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ECSS-C-CCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             cCCC-C-EEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            6543 3 89999999999999998 9999999997543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=1.6e-19  Score=177.59  Aligned_cols=326  Identities=9%  Similarity=-0.020  Sum_probs=215.1

Q ss_pred             cccceeEEEEcCCCCEEEEecC----CCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCE
Q psy2110          80 NKTMWKKCCFSGDGEYVCAGSA----RQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTL  155 (622)
Q Consensus        80 ~~~~~~~~~~sp~~~~l~~~~~----~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~  155 (622)
                      ....+.+++++|||+.+++...    ..+.|.+||..+++.+.++..+..                   ..++|+|||++
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~-------------------~~~a~SpDG~~   79 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-------------------PNPVAAHSGSE   79 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC-------------------ccEEEcCCCCE
Confidence            3444567899999999876532    125799999999999998877654                   26899999999


Q ss_pred             EEEee----------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe--CCCeEEEEEc
Q psy2110         156 LAVGC----------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC--NDGRIVLWDF  223 (622)
Q Consensus       156 l~s~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iwd~  223 (622)
                      |++++          .++.|.+||..+++....+..+........    .....+.|+++++.+++..  .++.+.+|+.
T Consensus        80 l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  155 (373)
T d2madh_          80 FALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG----PYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             EEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec----cCCCcEEEEeCCCcEEEEEEcCCCceEEeec
Confidence            99875          357899999999988777655543211111    1234678999999776654  3567889998


Q ss_pred             CCCceEEEeccCCcCeeEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEEeC-----CCC--eEEEEEeCCCCeEEEE
Q psy2110         224 LTRGIAKIISAHMHPVCSISWSRNGYKI-ISASTDNNVCIWDVLTGECEQKYRF-----PSP--ILKVQFHPRNDHMFLV  295 (622)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~--v~~~~~~~~~~~~~~~  295 (622)
                      .+.+.....    ....++.++++|+.+ ++.+.|+.+.+|+...++.......     ...  ...+.+.+++  .++.
T Consensus       156 ~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  229 (373)
T d2madh_         156 GGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVW  229 (373)
T ss_pred             cCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEE
Confidence            877655433    345678899998755 6778899999999998887765541     112  2233444433  4566


Q ss_pred             eeCCCcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         296 CPMRHAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       296 ~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      .+.++.+.+|+.......  ..............+.|.+...+..+.++..                      ...+.++
T Consensus       230 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----------------------~~~~~~~  287 (373)
T d2madh_         230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG----------------------IYLLTSE  287 (373)
T ss_pred             ecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe----------------------EEEecCC
Confidence            677888888887765322  2222222223333333333333333333211                      1123445


Q ss_pred             CCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeE--EEeeCCCCeEEEEECCCCeeE
Q psy2110         374 GNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYV--CAGSARQHALYIWEKSVGNLV  451 (622)
Q Consensus       374 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l--~~~~~~d~~i~iwd~~~~~~~  451 (622)
                      +..++....++.+.+||...         .+.+..+.   .......++|||||+++  ++++. ++.|+|||+.+++.+
T Consensus       288 ~~~~~~~~~~~~v~~~d~~t---------~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~-d~~v~v~D~~tg~~~  354 (373)
T d2madh_         288 QSAWKLHAAAKEVTSVTGLV---------GQTSSQIS---LGHDVDAISVAQDGGPDLYALSAG-TEVLHIYDAGAGDQD  354 (373)
T ss_pred             CceEEeecCCCeEEEEECCC---------CcEEEEec---CCCCeeEEEECCCCCEEEEEEeCC-CCeEEEEECCCCCEE
Confidence            55667777788999999873         33334332   22345678999999853  45554 899999999999999


Q ss_pred             EEEecCCCCceeEEEECCC
Q psy2110         452 KILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       452 ~~~~~~~~~~v~~v~~sp~  470 (622)
                      +.+.++... .+.+++.++
T Consensus       355 ~~~~~~g~~-P~~l~~~~~  372 (373)
T d2madh_         355 QSTVELGSG-PQVLSVMNE  372 (373)
T ss_pred             EEECCCCCC-CcEEEEecC
Confidence            999877655 667766543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.7e-20  Score=177.55  Aligned_cols=280  Identities=15%  Similarity=0.149  Sum_probs=192.9

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEEEe-
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKII-  232 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~-  232 (622)
                      .+++++.|++|++|++.....+..+.....+         ..+..++|+|||++|++++ .++.|++|++........+ 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---------~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP---------GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECS---------SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCC---------CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe
Confidence            4567778999999999765443333211111         2467899999999996655 4899999999865433222 


Q ss_pred             --ccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEE
Q psy2110         233 --SAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVCPMRHAAVLVD  306 (622)
Q Consensus       233 --~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d  306 (622)
                        ..+...+..++|+|||++|++++. ++.+.+|+...........   +...+.++.++|+++.++.....+..+.+|+
T Consensus        77 ~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          77 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             eecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence              234456788999999999999885 6689999887766544433   5667889999999998888888888899999


Q ss_pred             ecCCceee------cccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCcc----EEEEEe------cCCCCEEEEE
Q psy2110         307 TDGDHQIV------PIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALE----LKASFK------ASTTAIKSIE  369 (622)
Q Consensus       307 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~------~~~~~i~~~~  369 (622)
                      ........      ...........++|++++.+++... ..+...+++.....    ....+.      ........++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         157 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             eccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            87653221      1223345567899999998887654 45677777764322    222222      2234567789


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEecccccccCCCCCCCcceeeec-cccceeeeeEEEcCCCCeEEEeeCCCCeEEEE--EC
Q psy2110         370 FARRGNCLLVNT-GDRLIRVYNHQEVLNAGKDGDPEPIQKLQD-LVNKTMWKKCCFSGDGEYVCAGSARQHALYIW--EK  445 (622)
Q Consensus       370 ~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iw--d~  445 (622)
                      +++++++++... .++.+.+|++..         ......... .........++|+|||++|++++.+++.|.+|  |.
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSE---------DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECT---------TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EecccCceeeecccCCeEEEEEEcC---------CCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            999999777664 577899999873         111222221 11222345689999999998888778899998  55


Q ss_pred             CCCeeEE
Q psy2110         446 SVGNLVK  452 (622)
Q Consensus       446 ~~~~~~~  452 (622)
                      .+|++..
T Consensus       308 ~tG~l~~  314 (333)
T d1ri6a_         308 EQGLLHE  314 (333)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            6776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.5e-19  Score=171.93  Aligned_cols=275  Identities=9%  Similarity=0.092  Sum_probs=191.9

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEe--ccCCcCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCcE----EEEEeCCCCe
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKII--SAHMHPVCSISWSRNGYKIISAST-DNNVCIWDVLTGEC----EQKYRFPSPI  280 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~-d~~i~iwd~~~~~~----~~~~~~~~~v  280 (622)
                      .+++++.+++|++|++.+...+..+  ..|.+.+..|+|+|||++|++++. |+.|++|++.....    .........+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3567778999999999865444333  367789999999999999966654 79999999976542    2233355677


Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEEecCCcee--ecccCCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCccEEEE
Q psy2110         281 LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQI--VPIDEDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPALELKAS  357 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~  357 (622)
                      ..++|+|+|+.+++++..++.+.+|+.......  .....+...+.++.++|+++++++++. +..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            889999999988887778889999998766433  333455666778899999998887764 45799999765432221


Q ss_pred             ------EecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeeec----cccceeeeeEEEcCC
Q psy2110         358 ------FKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQD----LVNKTMWKKCCFSGD  426 (622)
Q Consensus       358 ------~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~spd  426 (622)
                            ..........++|++++.+++.... .+...+|+......     ..........    .........+++++|
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  240 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-----NIECVQTLDMMPENFSDTRWAADIHITPD  240 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----CCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc-----ceeeeeeeeeeecCCCccccceeEEEecc
Confidence                  1134456789999999998877654 56678887652110     1111111111    111223345789999


Q ss_pred             CCeEEEeeCCCCeEEEEECCCCeeEEEEe---cCCCCceeEEEECCCCCEEEEEe--CCcEEEeecC
Q psy2110         427 GEYVCAGSARQHALYIWEKSVGNLVKILH---GTKGELLLDVVWHPVRPIIASIS--SGVVSLWAQN  488 (622)
Q Consensus       427 g~~l~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~v~~sp~~~~l~s~~--dg~v~iw~~~  488 (622)
                      +++++.....++.+.+|++........+.   ..... +.+++|+|||++|++++  +++|++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         241 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             cCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCC-eeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            99988887768899999887644333322   22233 78999999999888776  6899999774

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=2e-18  Score=169.60  Aligned_cols=294  Identities=12%  Similarity=-0.007  Sum_probs=209.0

Q ss_pred             eEEEEcCCCCEEEEee-----CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe------
Q psy2110         145 VTCAFNKRGTLLAVGC-----NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC------  213 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------  213 (622)
                      ..++++|||+.+++..     ..+.|.+||..+++.+..+..+.             ...++|+|||++|++++      
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-------------~~~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-------------LPNPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-------------CccEEEcCCCCEEEEEeecCCcc
Confidence            5889999999887642     34679999999998888765543             23689999999998875      


Q ss_pred             ----CCCeEEEEEcCCCceEEEeccCCcCe-------eEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCCCCe
Q psy2110         214 ----NDGRIVLWDFLTRGIAKIISAHMHPV-------CSISWSRNGYKIISAS--TDNNVCIWDVLTGECEQKYRFPSPI  280 (622)
Q Consensus       214 ----~dg~i~iwd~~~~~~~~~~~~~~~~v-------~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~v  280 (622)
                          .++.|.+||..+++....+..+....       ..+.|+++++.++...  .++.+.+|+....+......   ..
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~  167 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---SP  167 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---cc
Confidence                35789999999999888877665433       4578889998776654  35678999988776654443   45


Q ss_pred             EEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC------CCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         281 LKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE------DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      .++.++|+++.++++...++.+.+|+............      .........+++++.+ +..+.++.+.+|+..+...
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGA  246 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeE
Confidence            67889999999999999999999999987655443322      1222334455555544 4456778899999887654


Q ss_pred             E--EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEE
Q psy2110         355 K--ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       355 ~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  432 (622)
                      .  .....+........+.|.+...+..+.|+....                                 .+.+++..++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------------------------------~~~~~~~~~~~  293 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY---------------------------------LLTSEQSAWKL  293 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEE---------------------------------EecCCCceEEe
Confidence            3  333344455556666666555555555443221                                 23334555556


Q ss_pred             eeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCE--EEEEe-CCcEEEeecCCcc
Q psy2110         433 GSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPI--IASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~--l~s~~-dg~v~iw~~~~~~  491 (622)
                      ... ++.+.+||..+++.+..+.... . +..++|+|||+.  +++++ |++|++||+.+.+
T Consensus       294 ~~~-~~~v~~~d~~t~~~~~~~~~~~-~-~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         294 HAA-AKEVTSVTGLVGQTSSQISLGH-D-VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ecC-CCeEEEEECCCCcEEEEecCCC-C-eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            655 7789999999999988876443 3 899999999984  35666 9999999997543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.3e-19  Score=176.72  Aligned_cols=294  Identities=13%  Similarity=0.081  Sum_probs=206.1

Q ss_pred             EEEEcCCCCEEEEee-----CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------
Q psy2110         146 TCAFNKRGTLLAVGC-----NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------  213 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------  213 (622)
                      -.+.+||++.+++..     .++.|.+||..+++.+..+....             ...++|+|||++|++.+       
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-------------~~~~a~SpDg~~l~v~~~~~~~~~   72 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-------------LPNPVVADDGSFIAHASTVFSRIA   72 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-------------SCEEEECTTSSCEEEEEEEEEETT
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-------------CCceEEcCCCCEEEEEeCCCcccc
Confidence            346789999887653     45679999999998887775443             23689999999887653       


Q ss_pred             ---CCCeEEEEEcCCCceEEEeccCC-------cCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCC---
Q psy2110         214 ---NDGRIVLWDFLTRGIAKIISAHM-------HPVCSISWSRNGYKIISAST--DNNVCIWDVLTGECEQKYRFPS---  278 (622)
Q Consensus       214 ---~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~---  278 (622)
                         .++.|++||+.+++....+..+.       .....++|++++++++.++.  +..+.+|+..+++....+....   
T Consensus        73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence               47889999999999887765432       23456899999999887754  5689999999999888776443   


Q ss_pred             -----CeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCcc
Q psy2110         279 -----PILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALE  353 (622)
Q Consensus       279 -----~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  353 (622)
                           ....+.+++++..+++....++.+.+++......     .+...+....+.+++..++.++.++.+++|++..++
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence                 2344667777776666666666666665544322     122233445677888899999999999999998776


Q ss_pred             EEE--EEecC----------CCCEEEEEEcCCCCEEEEEeCC----------CcEEEEecccccccCCCCCCCcceeeec
Q psy2110         354 LKA--SFKAS----------TTAIKSIEFARRGNCLLVNTGD----------RLIRVYNHQEVLNAGKDGDPEPIQKLQD  411 (622)
Q Consensus       354 ~~~--~~~~~----------~~~i~~~~~s~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~  411 (622)
                      ...  ....+          ......+++++++..++....+          ..|.+||...         .+.+..+. 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t---------~~~~~~~~-  297 (355)
T d2bbkh_         228 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT---------GERLAKFE-  297 (355)
T ss_dssp             CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---------CCEEEEEE-
T ss_pred             EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC---------CcEEEEec-
Confidence            432  12111          1223458899999988776543          3689999883         33444443 


Q ss_pred             cccceeeeeEEEcCCCCe-EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         412 LVNKTMWKKCCFSGDGEY-VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       412 ~~~~~~~~~~~~spdg~~-l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                        ......+++|+|||+. +++++..++.|++||+.+++.++.+.++... ...+.+.++
T Consensus       298 --~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~-p~~i~~~d~  354 (355)
T d2bbkh_         298 --MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG-PQVITTADM  354 (355)
T ss_dssp             --EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS-CCEEECCCC
T ss_pred             --CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC-ccEEEeCCC
Confidence              2344568899999984 3444444899999999999999999866443 555555544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.1e-17  Score=162.83  Aligned_cols=275  Identities=11%  Similarity=0.057  Sum_probs=187.1

Q ss_pred             EECCCCCEEEEEe-----CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe----------CCCcEEEEEC
Q psy2110         201 AFNKRGTLLAVGC-----NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS----------TDNNVCIWDV  265 (622)
Q Consensus       201 ~~s~~g~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------~d~~i~iwd~  265 (622)
                      +.+|||+.+++..     ....|.+||..+++.+.++..+..  ..++|||||++|++++          .++.|++||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            5689999987763     356799999999999988876544  4799999999887653          4788999999


Q ss_pred             CCCcEEEEEeC--------CCCeEEEEEeCCCCeEEEEe-eCCCcEEEEEecCCceeecccCCCCc-------eEEEEEe
Q psy2110         266 LTGECEQKYRF--------PSPILKVQFHPRNDHMFLVC-PMRHAAVLVDTDGDHQIVPIDEDSDL-------SIVASFD  329 (622)
Q Consensus       266 ~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~  329 (622)
                      .+++....+..        ......++|+|+++.+++.. ..+..+.+|+..+...+..+......       ...+.++
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            99998887752        12345689999999876654 44567889999988776665543321       1223444


Q ss_pred             eCCCEEEEEe-cCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCccee
Q psy2110         330 RRGQHVVTGN-SKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQK  408 (622)
Q Consensus       330 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  408 (622)
                      ++++.++... .++.+.+++.....     ..+...+....+.+++..++.++.++.+++|++.....       ..+..
T Consensus       166 ~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~  233 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-------KFLPA  233 (355)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-------EECCC
T ss_pred             CCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-------EEEec
Confidence            5544443322 22233333332221     12334455677888888999999999999999874211       11111


Q ss_pred             eecc--------ccceeeeeEEEcCCCCeEEEeeCC---------CCeEEEEECCCCeeEEEEecCCCCceeEEEECCCC
Q psy2110         409 LQDL--------VNKTMWKKCCFSGDGEYVCAGSAR---------QHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVR  471 (622)
Q Consensus       409 ~~~~--------~~~~~~~~~~~spdg~~l~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~  471 (622)
                      ....        ........+++++++..++....+         ...|++||..+++.+..+..+. . +.+++|+|||
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-~-~~~~a~spDG  311 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-IDSINVSQDE  311 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-ECEEEECCSS
T ss_pred             cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC-C-EEEEEEcCCC
Confidence            1100        001112347999999998876542         2479999999999988887543 2 8999999999


Q ss_pred             C--EEEEEe-CCcEEEeecCCcc
Q psy2110         472 P--IIASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       472 ~--~l~s~~-dg~v~iw~~~~~~  491 (622)
                      +  ++++++ |+.|++||+.+.+
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCC
T ss_pred             CeEEEEEECCCCEEEEEECCCCC
Confidence            7  345555 8999999997543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.73  E-value=8.6e-16  Score=155.50  Aligned_cols=333  Identities=12%  Similarity=0.069  Sum_probs=194.3

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC----
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN----  161 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----  161 (622)
                      .+.|.++++++...   ++.|.+||+.+++....+..+.-.-            ....|.++.|||||++|+.++.    
T Consensus        21 ~~~W~~d~~~~~~~---~~~~~~~~~~t~~~~~~~~~~~~~~------------~~~~i~~~~~SpDg~~i~~~~~~~~~   85 (470)
T d2bgra1          21 SLRWISDHEYLYKQ---ENNILVFNAEYGNSSVFLENSTFDE------------FGHSINDYSISPDGQFILLEYNYVKQ   85 (470)
T ss_dssp             CCEECSSSEEEEES---SSCEEEEETTTCCEEEEECTTTTTT------------SSSCCCEEEECTTSSEEEEEEEEEEC
T ss_pred             CCEeCCCCEEEEEc---CCcEEEEECCCCCEEEEEchhhhhh------------ccCccceeEECCCCCEEEEEECCcce
Confidence            57899999988653   4789999999999877666543110            0112369999999999998753    


Q ss_pred             -----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccC-
Q psy2110         162 -----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAH-  235 (622)
Q Consensus       162 -----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-  235 (622)
                           ++.+.+||+.+++... +..+.           ..+..+.|||||+.+|... ++.+++|+..+++..+....+ 
T Consensus        86 ~r~s~~~~~~l~d~~~~~~~~-l~~~~-----------~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1          86 WRHSYTASYDIYDLNKRQLIT-EERIP-----------NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             SSSCEEEEEEEEETTTTEECC-SSCCC-----------TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB
T ss_pred             eeeccCceEEEEECCCCcccc-cccCC-----------ccccccccccCcceeeEee-cccceEEECCCCceeeeeeccC
Confidence                 5678999999886443 33332           2478899999999999864 678999999888766544322 


Q ss_pred             -----------------CcCeeEEEEcCCCCEEEEEeCCCc-EEEEEC---CCC---c-E-----------------EEE
Q psy2110         236 -----------------MHPVCSISWSRNGYKIISASTDNN-VCIWDV---LTG---E-C-----------------EQK  273 (622)
Q Consensus       236 -----------------~~~v~~~~~s~~~~~l~s~~~d~~-i~iwd~---~~~---~-~-----------------~~~  273 (622)
                                       .+....+.|||||++|++...|.. +..|.+   ...   . .                 +..
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v  232 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEE
Confidence                             233466889999999998876533 333322   100   0 0                 000


Q ss_pred             Ee-----------------------CCCCeEEEEEeCCCCeEEEEeeCCC---cEEEEEe--cCCceeecc---------
Q psy2110         274 YR-----------------------FPSPILKVQFHPRNDHMFLVCPMRH---AAVLVDT--DGDHQIVPI---------  316 (622)
Q Consensus       274 ~~-----------------------~~~~v~~~~~~~~~~~~~~~~~~~~---~i~~~d~--~~~~~~~~~---------  316 (622)
                      +.                       ....+..+.|.+++..++.......   .+.+++.  .++......         
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~  312 (470)
T d2bgra1         233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (470)
T ss_dssp             EEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeec
Confidence            10                       0112356778877764444333322   2344443  333221111         


Q ss_pred             ----cCCCCceEEEEEeeCC--CEEEEEecCCeE--EEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCC---
Q psy2110         317 ----DEDSDLSIVASFDRRG--QHVVTGNSKGKV--LVLSCPALELKASFKASTTAIKSIEFARRGNCLL-VNTGDR---  384 (622)
Q Consensus       317 ----~~~~~~~~~~~~~~~~--~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~---  384 (622)
                          ..+...  ...+.+++  .+++....+|..  ++|+...+. ...+..+...|..+ ++++++.++ +++.++   
T Consensus       313 ~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p  388 (470)
T d2bgra1         313 TGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGI-EALTSDYLYYISNEYKGMP  388 (470)
T ss_dssp             SSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEE-EEECSSEEEEEESCGGGCT
T ss_pred             cceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEE-EEECCCEEEEEEecCCCCc
Confidence                011111  12334433  345566677654  555655444 44454455667766 444455443 333322   


Q ss_pred             -cEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCCeEEEeeC--CCCeEEEEECCCCeeEEEEecC
Q psy2110         385 -LIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGEYVCAGSA--RQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       385 -~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~--~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                       .-.||.+.-      . .......+..  ..+...+.+++|||||+|++....  +.-.+.+|+..+|+.++.|...
T Consensus       389 ~~~~ly~v~~------~-g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         389 GGRNLYKIQL------S-DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             TCBEEEEEET------T-CTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             ceEEEEEEEC------C-CCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence             223444431      0 1112222211  122345578899999999885443  2346899999999999998753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.73  E-value=1.1e-17  Score=161.53  Aligned_cols=318  Identities=10%  Similarity=-0.004  Sum_probs=207.1

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCccc-------------------ccccccceEEEEECCCCCEEEEEe-C
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG-------------------ALDCISLAVTCAFNKRGTLLAVGC-N  214 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~s~~g~~l~~~~-~  214 (622)
                      .+++++.+|.|++|++.+++.++++.........+                   ............++|||++|++.. .
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            36678889999999999988777654321110000                   000112344555689999986664 6


Q ss_pred             CCeEEEEEcCCCceEEEec-cCCcCeeEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCcEEEEE
Q psy2110         215 DGRIVLWDFLTRGIAKIIS-AHMHPVCSISWSRNGY--KIISASTDN-----------------NVCIWDVLTGECEQKY  274 (622)
Q Consensus       215 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~s~~~d~-----------------~i~iwd~~~~~~~~~~  274 (622)
                      +++|.++|+.+++....+. .+...+..++|+|+|+  +++..+.+.                 .+..+|..+.+...++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            7899999999998887665 4567889999999998  444444322                 2356899999988888


Q ss_pred             eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccE
Q psy2110         275 RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALEL  354 (622)
Q Consensus       275 ~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  354 (622)
                      ........+.++|+|+++++++.....+..++..+......+... .......+.++|+++..+ .++.+.+++....+.
T Consensus       173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v  250 (441)
T d1qnia2         173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEF  250 (441)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSS
T ss_pred             ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeC-CCCcEEEEcccCCce
Confidence            877888999999999988777755544443333332221111000 001123456788877664 456777777777777


Q ss_pred             EEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEE
Q psy2110         355 KASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCA  432 (622)
Q Consensus       355 ~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~  432 (622)
                      +..+..... ...+.++|||++++++ ..+++|.+||+......-. +.......+... .........+|+++|..+.+
T Consensus       251 ~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~-~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts  328 (441)
T d1qnia2         251 TRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE-DKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT  328 (441)
T ss_dssp             EEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT-TSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred             EEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh-ccCCcceEEEeecccccCcccceecCCceEEEc
Confidence            777776544 4689999999988765 5589999999986443211 111111111111 11122244589999977767


Q ss_pred             eeCCCCeEEEEECCC----------CeeEEEE-----ecCCCCceeEEEECCCCCEEEEEe
Q psy2110         433 GSARQHALYIWEKSV----------GNLVKIL-----HGTKGELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       433 ~~~~d~~i~iwd~~~----------~~~~~~~-----~~~~~~~v~~v~~sp~~~~l~s~~  478 (622)
                      ... |.+|..|++..          ...+..+     .||... +.+.+++|+|++|++++
T Consensus       329 ~~~-ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~-~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         329 LFI-DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA-SLTESRDADGKWLVVLS  387 (441)
T ss_dssp             ETT-TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE-TTTTSTTCCCCEEEEEE
T ss_pred             ccc-cceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc-ccccccCCCCcEEEecC
Confidence            665 88999999741          1234444     455544 67778999999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=9e-16  Score=149.92  Aligned_cols=290  Identities=11%  Similarity=-0.025  Sum_probs=189.6

Q ss_pred             EEEEcCCCCEE--E-EeeCCCc--EEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------
Q psy2110         146 TCAFNKRGTLL--A-VGCNDGR--IVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------  213 (622)
Q Consensus       146 ~~~~s~d~~~l--~-s~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------  213 (622)
                      .++..++++..  + ....++.  |.+||..+++.+..+..+..             ..++|+|||+.|++.+       
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-------------~~~a~spDg~~i~~~~~~~~~~~   90 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-------------SLAVAGHSGSDFALASTSFARSA   90 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-------------CEEEECTTSSCEEEEEEEETTTT
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-------------CcceECCCCCEEEEEcccCcccc
Confidence            55667788743  2 2344444  66669888888777665542             2579999999988764       


Q ss_pred             ---CCCeEEEEEcCCCceEEEeccCCc-------CeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeCCCCeEE
Q psy2110         214 ---NDGRIVLWDFLTRGIAKIISAHMH-------PVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRFPSPILK  282 (622)
Q Consensus       214 ---~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~  282 (622)
                         .++.|.+||..+++....+..+..       ....++|+|||++|+++. .++.+.+||+.+++....+..+...  
T Consensus        91 ~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--  168 (368)
T d1mdah_          91 KGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--  168 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--
T ss_pred             ccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--
Confidence               367799999999998887754332       234689999999998876 4689999999999998888754322  


Q ss_pred             EEEeCCCCeEEEEeeCCCcEEEEEecCCceee------cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         283 VQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV------PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                       .+.|.+...++..+.|+.+.+++........      ....+........+.+++..+...  .+.+++++........
T Consensus       169 -~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         169 -HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATM  245 (368)
T ss_dssp             -CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEE
T ss_pred             -eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEE
Confidence             1234445566667777877777775443221      122233334456667777655543  4456666665544332


Q ss_pred             EEe--cC----------CCCEEEEEEcCCCCEEEEEeCC---------CcEEEEecccccccCCCCCCCcceeeeccccc
Q psy2110         357 SFK--AS----------TTAIKSIEFARRGNCLLVNTGD---------RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNK  415 (622)
Q Consensus       357 ~~~--~~----------~~~i~~~~~s~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  415 (622)
                      ...  .+          ......+++++++..+++...+         ..|.+||...         .+.+..+.   ..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t---------~~~~~~~~---~~  313 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV---------GQTSGPIS---NG  313 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS---------CCEEECCE---EE
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC---------CcEeEEec---CC
Confidence            221  11          1122457889998877665422         3588899873         23333332   23


Q ss_pred             eeeeeEEEcCCCCe-EEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEE
Q psy2110         416 TMWKKCCFSGDGEY-VCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVW  467 (622)
Q Consensus       416 ~~~~~~~~spdg~~-l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~  467 (622)
                      ..+..++|||||+. |++....++.|++||..+|+.++.+.....  ...|++
T Consensus       314 ~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~--P~~l~~  364 (368)
T d1mdah_         314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG--PESLSV  364 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC--CCEEEC
T ss_pred             CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC--CCEEEE
Confidence            45667899999974 444444488999999999999999876543  455554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.70  E-value=2.2e-18  Score=166.59  Aligned_cols=326  Identities=13%  Similarity=0.039  Sum_probs=202.6

Q ss_pred             EEeccCCCeEEEEeccccceecccCceEEeecCCceEEEeec--hhhhhcCCCCCCccchhhhhhccccceeEEEEcCCC
Q psy2110          16 VVTGNSKGKVLVLSCPALELKASRGNCLLVNTGDRLIRVYNH--QEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDG   93 (622)
Q Consensus        16 latg~~dg~v~vwd~~~~~~~~~~~~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~   93 (622)
                      ++||+.+|.|+||++.+++...    .|.+-+.++. +.|-.  ++.......     ........++-...+..++|||
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~----~IpVfspd~~-~g~g~~~es~~vl~~~-----~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELM----RIPVFNVDSA-TGWGITNESKEILGGD-----QQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEE----EECSSSBCTT-TCTTTSHHHHHHHCSS-----SCCSCCCBCCCEEEEETTEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEE----EEEeEcCCCC-EEEEECCccceEEecc-----cccccCcccCCCcceecccCCC
Confidence            5688899999999987765441    1111111111 01111  110000000     0000111233333445678999


Q ss_pred             CEEEEecCCCCeEEEEEcCCCceEEEEecc-CcceeEEEEeecCccccccceeEEEEcCCCC--EEEEeeCCC-------
Q psy2110          94 EYVCAGSARQHALYIWEKSVGNLVKILHGT-KGELLLDVVEFDGALDCISLAVTCAFNKRGT--LLAVGCNDG-------  163 (622)
Q Consensus        94 ~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~s~~~dg-------  163 (622)
                      ++|.+....++.|.++|+.++++...+.-. ....                 +.++|+|+|+  +++..+.+.       
T Consensus        84 r~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gp-----------------hgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLDIMKTDKITHIPNVQAI-----------------HGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCE-----------------EEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCc-----------------cceEEeccCCEEEEEeccCCcccccCcc
Confidence            999887666689999999999988877643 2233                 6899999999  444444332       


Q ss_pred             ----------cEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC-eEEEEEcCCCceEEEe
Q psy2110         164 ----------RIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG-RIVLWDFLTRGIAKII  232 (622)
Q Consensus       164 ----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-~i~iwd~~~~~~~~~~  232 (622)
                                .+..+|..+.+....+....            ....++|+|+|+++++++.+. .+..++..+......+
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~------------~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i  214 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDG------------NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV  214 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESS------------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE
T ss_pred             cccccccccceEEeecCccceeeEEEecCC------------CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE
Confidence                      12345555544443333221            246789999999999887653 3333343343333222


Q ss_pred             ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCce
Q psy2110         233 SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQ  312 (622)
Q Consensus       233 ~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  312 (622)
                      ... ..-..+.++++|+++..+ .++.+.+++....+.+..+........+.++|||+++++++..++++.+||+.....
T Consensus       215 ~v~-n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         215 VVF-NVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             EEE-EHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EeC-CccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            211 111234567889876654 467788888787788888886677788999999999999999999999999865321


Q ss_pred             e-----------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCC----------ccEEEEEe-----cCCCCEE
Q psy2110         313 I-----------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPA----------LELKASFK-----ASTTAIK  366 (622)
Q Consensus       313 ~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~-----~~~~~i~  366 (622)
                      .           .......-.....+|+++|..+.+...|..|..|++..          ...+..+.     +|...+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~  372 (441)
T d1qnia2         293 LFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASL  372 (441)
T ss_dssp             HTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT
T ss_pred             HhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccc
Confidence            1           00011111234458999998888888999999999741          22444553     5555566


Q ss_pred             EEEEcCCCCEEEEEeC
Q psy2110         367 SIEFARRGNCLLVNTG  382 (622)
Q Consensus       367 ~~~~s~~~~~l~~~~~  382 (622)
                      +.+++|||++|++++.
T Consensus       373 ~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         373 TESRDADGKWLVVLSK  388 (441)
T ss_dssp             TTSTTCCCCEEEEEES
T ss_pred             ccccCCCCcEEEecCc
Confidence            6678999999999964

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=2e-14  Score=145.19  Aligned_cols=336  Identities=8%  Similarity=0.042  Sum_probs=191.3

Q ss_pred             EEEEccCCcEEEeccCCCeEEEEecccccee--------------------cccCceEEeec---------CCceEEEee
Q psy2110           6 VASFDRRGQHVVTGNSKGKVLVLSCPALELK--------------------ASRGNCLLVNT---------GDRLIRVYN   56 (622)
Q Consensus         6 ~~~fspdg~~latg~~dg~v~vwd~~~~~~~--------------------~~~~~~l~~~~---------~d~~i~~w~   56 (622)
                      .+.|.+|++++..  .+|.+.+||+.+++..                    ++++++|+.++         .++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5678999998876  4688999998876321                    56788888774         356778999


Q ss_pred             chhhhhcCCCCCCccchhhhhhccccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEE-eec
Q psy2110          57 HQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVV-EFD  135 (622)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~  135 (622)
                      +.+......            ..+...+..+.|||||++||...  ++.+++|+..+++..+....+...+..... ...
T Consensus        99 ~~~~~~~~l------------~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~  164 (470)
T d2bgra1          99 LNKRQLITE------------ERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV  164 (470)
T ss_dssp             TTTTEECCS------------SCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             CCCCccccc------------ccCCccccccccccCcceeeEee--cccceEEECCCCceeeeeeccCCCccccccccee
Confidence            875432111            12233456789999999999976  378999999988877655444332211100 000


Q ss_pred             CccccccceeEEEEcCCCCEEEEeeCCCc-EEEEecC-----------------------------------Cccccccc
Q psy2110         136 GALDCISLAVTCAFNKRGTLLAVGCNDGR-IVLWDFL-----------------------------------TRGIAKII  179 (622)
Q Consensus       136 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~-i~vw~~~-----------------------------------~~~~~~~~  179 (622)
                      ...........+.|||||++||+...|.+ +..|.+.                                   .+......
T Consensus       165 ~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~  244 (470)
T d2bgra1         165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (470)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCC
T ss_pred             eeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeec
Confidence            00011122346789999999999876533 4444332                                   11110000


Q ss_pred             ccccCCCcccccccccceEEEEECCCCCEEEEEe-CCC---eEEEE--EcCCCceEEEec-------------cCCcCee
Q psy2110         180 SAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDG---RIVLW--DFLTRGIAKIIS-------------AHMHPVC  240 (622)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg---~i~iw--d~~~~~~~~~~~-------------~~~~~v~  240 (622)
                      .................+..+.|.++++.++... ..+   .+.++  |..++.......             .|..  .
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~--~  322 (470)
T d2bgra1         245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP--S  322 (470)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC--C
T ss_pred             cccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC--C
Confidence            0000000000001112356778888887665532 221   23444  444444332211             1111  2


Q ss_pred             EEEEcCCCC--EEEEEeCCCc--EEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC----c--EEEEEecCC
Q psy2110         241 SISWSRNGY--KIISASTDNN--VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH----A--AVLVDTDGD  310 (622)
Q Consensus       241 ~~~~s~~~~--~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~--i~~~d~~~~  310 (622)
                      ...|.+++.  .++.+..+|.  |.+|+...+...........|..+ ++++++.+++++..++    .  ++-.++...
T Consensus       323 ~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~  401 (470)
T d2bgra1         323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY  401 (470)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred             CceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence            234444443  4556666765  555566666555555566667776 5556666666654332    2  444444443


Q ss_pred             ceeec----ccCCCCceEEEEEeeCCCEEEE---EecCCeEEEEeCCCccEEEEEec
Q psy2110         311 HQIVP----IDEDSDLSIVASFDRRGQHVVT---GNSKGKVLVLSCPALELKASFKA  360 (622)
Q Consensus       311 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~  360 (622)
                      .....    +..|...+..++|||+|++++.   +...-.+.+|+..+++.+..+..
T Consensus       402 ~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         402 TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             TCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             CceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence            33222    3456777889999999999874   33345689999999999888864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=8e-15  Score=143.05  Aligned_cols=278  Identities=8%  Similarity=-0.033  Sum_probs=179.6

Q ss_pred             EEEEcCCCCE--EEEecCCC--CeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee-
Q psy2110          86 KCCFSGDGEY--VCAGSARQ--HALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC-  160 (622)
Q Consensus        86 ~~~~sp~~~~--l~~~~~~~--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-  160 (622)
                      .++.+++++.  ++.....+  ..|.+||..+++.+..+.++...                   .++|+|||+.|++++ 
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~a~spDg~~i~~~~~   84 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-------------------LAVAGHSGSDFALAST   84 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-------------------EEEECTTSSCEEEEEE
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC-------------------cceECCCCCEEEEEcc
Confidence            4566778775  34333222  35777799999999988876643                   578999999888754 


Q ss_pred             ---------CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEE
Q psy2110         161 ---------NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       161 ---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~  230 (622)
                               .|+.|++||..+++....+..+........    .....++|+|||++|+++. .++.+.+||+.+++...
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g----~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG----PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS----CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             cCccccccccCCeEEEEECCCCcEeeeecCCccceeccc----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence                     467899999999988777665433221111    1123579999999998776 57999999999999888


Q ss_pred             EeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------CCCCeEEEEEeCCCCeEEEEeeCCCcEE
Q psy2110         231 IISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-------FPSPILKVQFHPRNDHMFLVCPMRHAAV  303 (622)
Q Consensus       231 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~i~  303 (622)
                      .+..+......   ......++..+.||.+.++++..........       ....+....+.+++.. +  ....+.++
T Consensus       161 ~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--~~~~~~v~  234 (368)
T d1mdah_         161 LTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-V--WAVASSIL  234 (368)
T ss_dssp             EEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-E--ECBSSCCE
T ss_pred             EeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE-E--EecCCCEE
Confidence            87765433211   1123456666777887777776543322221       1223344566665532 2  23344555


Q ss_pred             EEEecCCceeec--ccC----------CCCceEEEEEeeCCCEEEEEecC---------CeEEEEeCCCccEEEEEecCC
Q psy2110         304 LVDTDGDHQIVP--IDE----------DSDLSIVASFDRRGQHVVTGNSK---------GKVLVLSCPALELKASFKAST  362 (622)
Q Consensus       304 ~~d~~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~  362 (622)
                      +++.........  ...          .......+++++++..+++...+         ..|.+||..+++.+..+... 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-  313 (368)
T d1mdah_         235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-  313 (368)
T ss_dssp             EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-
T ss_pred             EEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-
Confidence            666544322211  111          01112347788998887665332         35899999999988877644 


Q ss_pred             CCEEEEEEcCCCCE--EEEEeCCCcEEEEeccc
Q psy2110         363 TAIKSIEFARRGNC--LLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       363 ~~i~~~~~s~~~~~--l~~~~~d~~i~i~d~~~  393 (622)
                      ..+.+++|+|||+.  ++++..++.|++||..+
T Consensus       314 ~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             CceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            56889999999974  34556789999999883

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.6e-10  Score=106.37  Aligned_cols=239  Identities=14%  Similarity=0.171  Sum_probs=156.7

Q ss_pred             eEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEE
Q psy2110         217 RIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDN---NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMF  293 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  293 (622)
                      .|.|.|.. |...+.+..+...+.+.+|||||++||......   .+.+.+..++.......+........|+|++..++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57777765 444444555567889999999999999876543   48888888888877777888899999999999888


Q ss_pred             EEeeCCCcEEEEEecC-CceeecccCCCCceEEEEEeeCCCEEEEEe-cCC--eEEEEeCCCccEEEEEecCCCCEEEEE
Q psy2110         294 LVCPMRHAAVLVDTDG-DHQIVPIDEDSDLSIVASFDRRGQHVVTGN-SKG--KVLVLSCPALELKASFKASTTAIKSIE  369 (622)
Q Consensus       294 ~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~  369 (622)
                      +.....+...++.... ..................+++++..++..+ .+|  .|.+.++..+... .+...........
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~  177 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDAD  177 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccc
Confidence            8777666555444432 222333333444445566777777665543 344  5666676655433 3444556677889


Q ss_pred             EcCCCCEEEEEeCC-CcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECC
Q psy2110         370 FARRGNCLLVNTGD-RLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKS  446 (622)
Q Consensus       370 ~s~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~  446 (622)
                      |+|+++.++..+.+ +...+|....        .....+...   .........|||||++|+..+..  ...|+++++.
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~~---~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDL--------ATGGVQVLS---STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEET--------TTCCEEECC---CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccceeEEEeecCCceeeeEeec--------ccccceEee---cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            99999998887654 4444444431        111112121   11122346899999999876542  3468999998


Q ss_pred             CCeeEEEEecCCCCceeEEEECCC
Q psy2110         447 VGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       447 ~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      .+.. ..+....+. +...+|||-
T Consensus       247 g~~~-~~lt~~~g~-~~~p~WSP~  268 (269)
T d2hqsa1         247 GRFK-ARLPATDGQ-VKFPAWSPY  268 (269)
T ss_dssp             SCCE-EECCCSSSE-EEEEEECCC
T ss_pred             CCCE-EEEeCCCCc-EEeEEeCCC
Confidence            7664 456555555 889999983

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-10  Score=115.86  Aligned_cols=338  Identities=12%  Similarity=0.152  Sum_probs=192.0

Q ss_pred             EEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee------
Q psy2110          87 CCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC------  160 (622)
Q Consensus        87 ~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------  160 (622)
                      ..|.+++.++....  +|.|.+||+.+++....+..+.-..              ..+....||||+++|+...      
T Consensus        22 ~~W~~~~~~~~~~~--~g~i~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~SpD~~~vl~~~~~~~~~   85 (465)
T d1xfda1          22 AKWISDTEFIYREQ--KGTVRLWNVETNTSTVLIEGKKIES--------------LRAIRYEISPDREYALFSYNVEPIY   85 (465)
T ss_dssp             CCBSSSSCBCCCCS--SSCEEEBCGGGCCCEEEECTTTTTT--------------TTCSEEEECTTSSEEEEEESCCCCS
T ss_pred             CEEeCCCcEEEEeC--CCcEEEEECCCCCEEEEEcCccccc--------------cccceeEECCCCCeEEEEEccccee
Confidence            46888888775543  4789999999887755554433211              0124778999999888763      


Q ss_pred             ---CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEecc-CC
Q psy2110         161 ---NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISA-HM  236 (622)
Q Consensus       161 ---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~  236 (622)
                         ..+.+.++|+.++............         ..+....|||||+.||... ++.|.+.+..++...+.... ..
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~~~~~~~---------~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~  155 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLDPPEVSN---------AKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE  155 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCS---------CCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred             EeeccccEEEEEccCCceeeccCccCCc---------cccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence               3577899999988654432222111         1234468999999998876 67888888877665544432 11


Q ss_pred             cC-----------------eeEEEEcCCCCEEEEEeCC-Cc---------------------------------EEEEEC
Q psy2110         237 HP-----------------VCSISWSRNGYKIISASTD-NN---------------------------------VCIWDV  265 (622)
Q Consensus       237 ~~-----------------v~~~~~s~~~~~l~s~~~d-~~---------------------------------i~iwd~  265 (622)
                      +.                 -.++.|||||++||....| ..                                 +.++|+
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~  235 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence            11                 2467899999999986532 22                                 334444


Q ss_pred             CCCcEEEEEeC-------CCCeEEEEEeCCCCeEEEEeeCCC---cEEEEEecCCceeecccCC-CCc----eEEEEEee
Q psy2110         266 LTGECEQKYRF-------PSPILKVQFHPRNDHMFLVCPMRH---AAVLVDTDGDHQIVPIDED-SDL----SIVASFDR  330 (622)
Q Consensus       266 ~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~-~~~----~~~~~~~~  330 (622)
                      .++........       ..-+..+.|+|+++.++.....+.   .+.++|..++......... ...    .....|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~  315 (465)
T d1xfda1         236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK  315 (465)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred             CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc
Confidence            33322111110       112567889998864444433332   4667787776544332211 111    12357889


Q ss_pred             CCCEEEE---EecCC--eEEEEeCC------CccEEEEEecCCCCEEEE-EEcCCCCEEEEEeC-C--CcEEEEeccccc
Q psy2110         331 RGQHVVT---GNSKG--KVLVLSCP------ALELKASFKASTTAIKSI-EFARRGNCLLVNTG-D--RLIRVYNHQEVL  395 (622)
Q Consensus       331 ~~~~l~~---~~~dg--~i~i~d~~------~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~-d--~~i~i~d~~~~~  395 (622)
                      +|+.++.   ...+|  .+..+.+.      .++.+..+....-.|..+ +|+.+++.+...+. +  +.-.+|.+.-. 
T Consensus       316 dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~-  394 (465)
T d1xfda1         316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV-  394 (465)
T ss_dssp             TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS-
T ss_pred             CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECC-
Confidence            9875432   21222  34433321      233333444434456664 68888887765432 2  22334444310 


Q ss_pred             ccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCC--CCeEEEEECCCCeeEEEEec
Q psy2110         396 NAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSAR--QHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--d~~i~iwd~~~~~~~~~~~~  456 (622)
                        + .....++..  .........++.|||+|++++.....  --.+.+++..+++.+..|..
T Consensus       395 --g-~~~~~~lt~--~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         395 --G-NFNRQCLSC--DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             --T-TCCCBCSST--TSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             --C-CCcceeecc--ccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence              0 001111110  11122344578999999999865542  23578888888988888864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=7.8e-10  Score=101.66  Aligned_cols=238  Identities=15%  Similarity=0.119  Sum_probs=153.6

Q ss_pred             eEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCC---cEEEEecCCccccccccc
Q psy2110         105 ALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDG---RIVLWDFLTRGIAKIISA  181 (622)
Q Consensus       105 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~  181 (622)
                      .|.|.|...+....... +...+                 .+.+|||||+.||......   .+.+.+...+....... 
T Consensus        20 ~l~i~d~dG~~~~~l~~-~~~~~-----------------~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR-SPQPL-----------------MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-   80 (269)
T ss_dssp             EEEEEETTSCSCEEEEE-ESSCE-----------------EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-
T ss_pred             EEEEEcCCCCCcEEEec-CCCce-----------------eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee-
Confidence            57788876444444443 34444                 4889999999999765433   35555655544332222 


Q ss_pred             ccCCCcccccccccceEEEEECCCCCEEEEEeC-CCeEEEEEcCC-CceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CC
Q psy2110         182 HMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN-DGRIVLWDFLT-RGIAKIISAHMHPVCSISWSRNGYKIISAST-DN  258 (622)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~  258 (622)
                      ..           .......|+|+|+.++.... .+...++.... ..................+++++..++..+. ++
T Consensus        81 ~~-----------~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  149 (269)
T d2hqsa1          81 FP-----------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG  149 (269)
T ss_dssp             CS-----------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             ee-----------cccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccC
Confidence            11           23577899999998887654 33333332222 2223333344455566678887776655543 44


Q ss_pred             --cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEE
Q psy2110         259 --NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVV  336 (622)
Q Consensus       259 --~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  336 (622)
                        .|.+.++..+................|+|++..++......+...++......................|+|||+.|+
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         150 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEE
T ss_pred             CceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEE
Confidence              567777777766655556667788899999999888888887777766654433334444555667789999999987


Q ss_pred             EEec---CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCC
Q psy2110         337 TGNS---KGKVLVLSCPALELKASFKASTTAIKSIEFARR  373 (622)
Q Consensus       337 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  373 (622)
                      ..+.   ...|+++++..+.. ..+....+.+...+|||-
T Consensus       230 f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         230 YSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             EEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            6543   34688999886654 456666778888999983

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.38  E-value=6.5e-10  Score=106.89  Aligned_cols=266  Identities=7%  Similarity=-0.030  Sum_probs=148.9

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ..|+|+|++++|+++.. +.+..|.+.....+.....+...         .....++++++++.++....+         
T Consensus        43 s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~---------~~p~~v~~~~~~~~~~v~~a~---------  103 (365)
T d1jofa_          43 SWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG---------GHPRANDADTNTRAIFLLAAK---------  103 (365)
T ss_dssp             SEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC---------SSGGGGCTTSCCEEEEEEECS---------
T ss_pred             CEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC---------CCcEEEEECCCCCEEEEEEec---------
Confidence            36899999999988765 56778876643222211111100         012345778888754433221         


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--EeCCCCeEEEEEeCCCCeEEEEeeCCCcE
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQK--YRFPSPILKVQFHPRNDHMFLVCPMRHAA  302 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~i  302 (622)
                               .+...|....+.+++........+...++.     .....  ......+.++.|+|++++++++......+
T Consensus       104 ---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v  169 (365)
T d1jofa_         104 ---------QPPYAVYANPFYKFAGYGNVFSVSETGKLE-----KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKL  169 (365)
T ss_dssp             ---------STTCCEEEEEESSSCCEEEEEEECTTCCEE-----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             ---------CCCCEEEEeEccCCCCcceeEeeeecceec-----CcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEE
Confidence                     012223333333333322222111111111     01111  11334577899999999888877777788


Q ss_pred             EEEEecCCceee-----cccCCCCceEEEEEeeCCCEEEEEe-cCCeEEEEeCCCccE--EEEEe---------------
Q psy2110         303 VLVDTDGDHQIV-----PIDEDSDLSIVASFDRRGQHVVTGN-SKGKVLVLSCPALEL--KASFK---------------  359 (622)
Q Consensus       303 ~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~---------------  359 (622)
                      .+|+......+.     ...........++|+|+++++++.. .+++|.+|++...+.  +....               
T Consensus       170 ~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (365)
T d1jofa_         170 WTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred             EEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccc
Confidence            888775432221     1222345678899999999886655 578999999865542  22211               


Q ss_pred             --cCCCCEEEEEEcCCCCEEEEEeC-C-----CcEEEEecccccccCCCCCCCcceeee-ccccceeeeeEEEcC-CCCe
Q psy2110         360 --ASTTAIKSIEFARRGNCLLVNTG-D-----RLIRVYNHQEVLNAGKDGDPEPIQKLQ-DLVNKTMWKKCCFSG-DGEY  429 (622)
Q Consensus       360 --~~~~~i~~~~~s~~~~~l~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sp-dg~~  429 (622)
                        .+......+.++|+|++|+++.. +     ..|..|++..      .+.......+. ..........++++| +|++
T Consensus       250 ~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~------~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC------CCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence              01123567899999999888743 2     2377777653      11111111111 111122234689998 8999


Q ss_pred             EEEeeCCCCeEEEEECCCCe
Q psy2110         430 VCAGSARQHALYIWEKSVGN  449 (622)
Q Consensus       430 l~~~~~~d~~i~iwd~~~~~  449 (622)
                      |+++...++.|.+|++....
T Consensus       324 l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         324 MAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEECSSSCEEEEEEEETTE
T ss_pred             EEEEeCCCCeEEEEEEeCCc
Confidence            99888778999999876443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.38  E-value=4e-10  Score=108.39  Aligned_cols=272  Identities=15%  Similarity=0.084  Sum_probs=161.2

Q ss_pred             EEEEeC--CCeEEEEEcC--CCceE--EE-eccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEE--eCCC
Q psy2110         209 LAVGCN--DGRIVLWDFL--TRGIA--KI-ISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTG-ECEQKY--RFPS  278 (622)
Q Consensus       209 l~~~~~--dg~i~iwd~~--~~~~~--~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~--~~~~  278 (622)
                      |++|+.  .+.|+.+.++  +++..  .. .......+..|+|++++++|+++.. +.+..|.+... ......  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            556643  4567665554  44332  11 1234456778999999999988865 56777766532 233222  2344


Q ss_pred             CeEEEEEeCCCCeEEEEee--CCCcEEEEEecCCc------------e----e-ecccCCCCceEEEEEeeCCCEEEEEe
Q psy2110         279 PILKVQFHPRNDHMFLVCP--MRHAAVLVDTDGDH------------Q----I-VPIDEDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       279 ~v~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~------------~----~-~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      ....+.++++++.++++..  ..+.+..+.+....            .    . .........+.++.|+|+|++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            5567788888876555443  23445444432210            0    0 00112233467899999999888875


Q ss_pred             c-CCeEEEEeCCC-ccEE--EEEe--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCCCCCCCcceeee--
Q psy2110         340 S-KGKVLVLSCPA-LELK--ASFK--ASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGKDGDPEPIQKLQ--  410 (622)
Q Consensus       340 ~-dg~i~i~d~~~-~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~--  410 (622)
                      . ...|.+|+... +...  ....  ......+.++|+|+++++.+... ++.|.+|++....       ...+....  
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~-------~~~~~~~~~~  236 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-------HMPVYTHHSF  236 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEE
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC-------ceEEEEeeee
Confidence            4 45788887543 3322  2222  23467889999999998877664 7889999987311       11111110  


Q ss_pred             -------------ccccceeeeeEEEcCCCCeEEEeeCCC-----CeEEEEECCC-CeeEEEE---ec-CCCCceeEEEE
Q psy2110         411 -------------DLVNKTMWKKCCFSGDGEYVCAGSARQ-----HALYIWEKSV-GNLVKIL---HG-TKGELLLDVVW  467 (622)
Q Consensus       411 -------------~~~~~~~~~~~~~spdg~~l~~~~~~d-----~~i~iwd~~~-~~~~~~~---~~-~~~~~v~~v~~  467 (622)
                                   ..........+.++|||++|+++...+     ..|..|++.. +......   .. ..+....++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~  316 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEe
Confidence                         011112234679999999998875322     2477777654 2222111   11 12223688999


Q ss_pred             CC-CCCEEEEEe--CCcEEEeecC
Q psy2110         468 HP-VRPIIASIS--SGVVSLWAQN  488 (622)
Q Consensus       468 sp-~~~~l~s~~--dg~v~iw~~~  488 (622)
                      +| +|++|+.+.  ++.|.+|+++
T Consensus       317 ~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         317 CPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCCeEEEEEEe
Confidence            98 799888886  7999999875

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.31  E-value=1.8e-09  Score=101.12  Aligned_cols=240  Identities=13%  Similarity=0.095  Sum_probs=160.8

Q ss_pred             eEEEEcCCCCEEEEeeC-------CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCe
Q psy2110         145 VTCAFNKRGTLLAVGCN-------DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGR  217 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  217 (622)
                      ..++|.++|+++++...       +|+|..|+..++............       .......++|.++|+.++++...+.
T Consensus        21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~-------~~g~P~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG-------YGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT-------EECCEEEEEECSSSSEEEEEETTTE
T ss_pred             eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcccc-------CCCcceeEEEeCCCCEEEEEECCCe
Confidence            47899999997766432       467888888776543322111100       0012467999999998888887778


Q ss_pred             EEEEEcCCCceEEEeccCC----cCeeEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCcEEEEEeCCC
Q psy2110         218 IVLWDFLTRGIAKIISAHM----HPVCSISWSRNGYKIISAST---------------DNNVCIWDVLTGECEQKYRFPS  278 (622)
Q Consensus       218 i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~---------------d~~i~iwd~~~~~~~~~~~~~~  278 (622)
                      |..++..............    ...+.+++.++|+..++-..               .|.|..++. .++.......-.
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~  172 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQ  172 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEES
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcc
Confidence            8888876543322111111    13578999999987776422               234544543 344444444334


Q ss_pred             CeEEEEEeCCCC----eEEEEeeCCCcEEEEEecCCceee------cccC-CCCceEEEEEeeCCCEEEEEecCCeEEEE
Q psy2110         279 PILKVQFHPRND----HMFLVCPMRHAAVLVDTDGDHQIV------PIDE-DSDLSIVASFDRRGQHVVTGNSKGKVLVL  347 (622)
Q Consensus       279 ~v~~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  347 (622)
                      ..+.++|+|+++    .++++-+..+.|+.|++.....+.      .+.. .......++++.+|+++++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            457899998765    466777788889999886543221      2221 12234578999999988888888999999


Q ss_pred             eCCCccEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecc
Q psy2110         348 SCPALELKASFKASTTAIKSIEFARRGNCLL-VNTGDRLIRVYNHQ  392 (622)
Q Consensus       348 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~i~d~~  392 (622)
                      |...++.+..+..+....++++|.|+++.|. +.+.++.|..+++.
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9988887777777767889999999998554 45567888888876

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=2.6e-09  Score=98.52  Aligned_cols=239  Identities=10%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------CCeEEEEEeCCCCeEEEE-eeCCCcEEEEEecC
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP-------SPILKVQFHPRNDHMFLV-CPMRHAAVLVDTDG  309 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~  309 (622)
                      ....++++++|+.+++-...+.|++||.. ++.+..+...       .....+++.++....+++ ...++.+..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            45789999999977776677889999955 7777766421       124556666655444443 34555666666544


Q ss_pred             CceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy2110         310 DHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--ASTTAIKSIEFARRGNCLLVNTGDRLIR  387 (622)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~  387 (622)
                      ................+++.++|.++++....+.+.+++. +++.+..+.  .+......+++.++++.+++....+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccccee
Confidence            3322222233455678899999999988888888999985 466676664  4456788899999998888888889999


Q ss_pred             EEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCC-CCceeEEE
Q psy2110         388 VYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTK-GELLLDVV  466 (622)
Q Consensus       388 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~v~  466 (622)
                      +|+...          ..+..+...........+++.++|+.+++-...++.|.+|+. +|+.+..+.... ......|+
T Consensus       182 ~~d~~G----------~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         182 VFNYEG----------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             EEETTC----------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE
T ss_pred             eeecCC----------ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEE
Confidence            998763          223333211111223568999999977775544567999984 588887775432 22378999


Q ss_pred             ECCCCCEEEEEeCCcEEEeecCC
Q psy2110         467 WHPVRPIIASISSGVVSLWAQNQ  489 (622)
Q Consensus       467 ~sp~~~~l~s~~dg~v~iw~~~~  489 (622)
                      +.|+|.++++..++.|++|+..+
T Consensus       251 v~~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         251 LMDDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EETTTEEEEEETTTEEEEEECSC
T ss_pred             EeCCCcEEEEeCCCeEEEEEeee
Confidence            99999866554489999999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=9.5e-10  Score=100.31  Aligned_cols=239  Identities=8%  Similarity=0.045  Sum_probs=153.7

Q ss_pred             ccceeEEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEe
Q psy2110          81 KTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVG  159 (622)
Q Consensus        81 ~~~~~~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~  159 (622)
                      ......++++++|...++.....+.+..++......... ..+...                  .+.++++++++++++.
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------p~gvav~~~g~i~v~d   74 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ------------------PQGLAVDGAGTVYVTD   74 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCS------------------CCCEEECTTCCEEEEE
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccC------------------ceEEEEcCCCCEEEee
Confidence            344568999999997766544446777766543322211 122222                  2488999999988777


Q ss_pred             eCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe
Q psy2110         160 CNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV  239 (622)
Q Consensus       160 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  239 (622)
                      ...+.+++++-.++.........            .....+++.++|+++++-.....+..++.................
T Consensus        75 ~~~~~i~~~~~~~~~~~~~~~~~------------~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p  142 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVLPFDGL------------NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP  142 (260)
T ss_dssp             TTTEEEEECTTCSCCEECCCCSC------------CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC
T ss_pred             eeeceeeeeeeccceeeeeeeee------------eecccccccccceeEeeccccccccccccccceeeeeeecccCCc
Confidence            77666776655444333222111            246789999999988777667777777765543322222223456


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE-eCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC
Q psy2110         240 CSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY-RFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE  318 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  318 (622)
                      .+++++++++.+++...++.|..++.......... ..-.....+++.+++. ++++....+.+..++............
T Consensus       143 ~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~~~~~~  221 (260)
T d1rwia_         143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFT  221 (260)
T ss_dssp             CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCCEECCCC
T ss_pred             ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeEEEEccC
Confidence            78999999998888777888999997755443322 2335678899999875 677777778888887655433332223


Q ss_pred             CCCceEEEEEeeCCCEEEEEecCCeEEEEeCC
Q psy2110         319 DSDLSIVASFDRRGQHVVTGNSKGKVLVLSCP  350 (622)
Q Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  350 (622)
                      .-.....++++++|.++++-..+++|+.++..
T Consensus       222 ~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            33456789999999888877777777766543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-09  Score=106.57  Aligned_cols=326  Identities=9%  Similarity=0.066  Sum_probs=189.5

Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEe---------CCC
Q psy2110         146 TCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC---------NDG  216 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~dg  216 (622)
                      ...|.+++.++.. ..+|.|.+|++.+++....+.......        -.+....||||+++++...         ..+
T Consensus        21 ~~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~   91 (465)
T d1xfda1          21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIES--------LRAIRYEISPDREYALFSYNVEPIYQHSYTG   91 (465)
T ss_dssp             CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTT--------TTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred             CCEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccc--------cccceeEECCCCCeEEEEEcccceeEeeccc
Confidence            3468888876654 457899999999886544333322111        1245678999999988764         357


Q ss_pred             eEEEEEcCCCceEEEe--ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC--CC-------------
Q psy2110         217 RIVLWDFLTRGIAKII--SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP--SP-------------  279 (622)
Q Consensus       217 ~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~-------------  279 (622)
                      .+.++|+.++......  ......+....|||||+.||... ++.|.+.+..++...+.....  ..             
T Consensus        92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee  170 (465)
T d1xfda1          92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (465)
T ss_dssp             EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             cEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhh
Confidence            7899999988754332  22345566789999999999886 578999998887766655421  11             


Q ss_pred             ----eEEEEEeCCCCeEEEEeeCCCcEE---------------------------------EEEecCCceeecc------
Q psy2110         280 ----ILKVQFHPRNDHMFLVCPMRHAAV---------------------------------LVDTDGDHQIVPI------  316 (622)
Q Consensus       280 ----v~~~~~~~~~~~~~~~~~~~~~i~---------------------------------~~d~~~~~~~~~~------  316 (622)
                          -.++-|||||+.+++....+..+.                                 ++|+.++......      
T Consensus       171 ~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~  250 (465)
T d1xfda1         171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP  250 (465)
T ss_dssp             TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred             hccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcC
Confidence                246789999998887654444333                                 3333322111100      


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEec-C---CeEEEEeCCCccEEEEEecCC-CCE----EEEEEcCCCCEEEE--Ee-CCC
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNS-K---GKVLVLSCPALELKASFKAST-TAI----KSIEFARRGNCLLV--NT-GDR  384 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~-~~i----~~~~~s~~~~~l~~--~~-~d~  384 (622)
                      ......+..+.|+++++.++.... +   ..+.++|..++++...+.... ..|    ....|+++|+.++.  .+ .+|
T Consensus       251 ~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g  330 (465)
T d1xfda1         251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (465)
T ss_dssp             GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             ccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc
Confidence            111223567889999887666432 2   258889999998766554322 222    34679999986443  22 233


Q ss_pred             --cEEEEecccccccCCCCCCCcceeeeccccceeeee-EEEcCCCCeEEEeeCCC----CeEEEEECCCCeeEEEEe--
Q psy2110         385 --LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKK-CCFSGDGEYVCAGSARQ----HALYIWEKSVGNLVKILH--  455 (622)
Q Consensus       385 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~spdg~~l~~~~~~d----~~i~iwd~~~~~~~~~~~--  455 (622)
                        .++.+.+.......   ....++.+..  +.-.+.. +.|+.+++.|...+..+    ..|+-.++..+.....+.  
T Consensus       331 ~~~ly~~~~~~~~~~~---~~~~~~~LT~--G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~  405 (465)
T d1xfda1         331 RGKFYHITVSSSQPNS---SNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD  405 (465)
T ss_dssp             SSCEEEEEEECSSCCS---SSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred             cCceEEEEeccccccC---CCceeEEecc--CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccc
Confidence              34444433111000   1111122211  1112223 47899888876443322    234444555443333222  


Q ss_pred             -cCCCCceeEEEECCCCCEEEEEeC----CcEEEeec
Q psy2110         456 -GTKGELLLDVVWHPVRPIIASISS----GVVSLWAQ  487 (622)
Q Consensus       456 -~~~~~~v~~v~~sp~~~~l~s~~d----g~v~iw~~  487 (622)
                       ..... ...+.|||++++++-...    -.+.+++.
T Consensus       406 ~~~~~~-~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~  441 (465)
T d1xfda1         406 LVENCT-YFSASFSHSMDFFLLKCEGPGVPMVTVHNT  441 (465)
T ss_dssp             SSSSCC-CCEEEECTTSSEEEEECCSSSSCCEEEEET
T ss_pred             cCCCCC-EEEEEECCCCCEEEEEeecCCCCeEEEEEC
Confidence             12222 678999999998775442    34555554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=1.8e-09  Score=98.47  Aligned_cols=236  Identities=10%  Similarity=0.021  Sum_probs=150.3

Q ss_pred             eEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Q psy2110         197 AVTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR  275 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  275 (622)
                      ...+++.++|++.++.. ..+.+..++...................++++++++.+++....+.+++++-.+........
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~   95 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD   95 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence            47899999999766654 45667776654433222222222345789999999877776666666666555555444333


Q ss_pred             CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEE
Q psy2110         276 FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELK  355 (622)
Q Consensus       276 ~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  355 (622)
                      .......+++.+++. ++++...+..+..++...................++++++|+.+++...++.|..++.......
T Consensus        96 ~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          96 GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             eeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            446678999999886 5555556666777766554333322222344568899999998888888889999997755444


Q ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         356 ASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       356 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      ............++++++|+++++....+.|..++....          ....+ ....-.....++++++|.++++-..
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~----------~~~~~-~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST----------TSTVL-PFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS----------CCEEC-CCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC----------eEEEE-ccCCCCCeEEEEEeCCCCEEEEECC
Confidence            333344566789999999998777777888888876521          11111 1111112356899999987666554


Q ss_pred             CCCeEEEEEC
Q psy2110         436 RQHALYIWEK  445 (622)
Q Consensus       436 ~d~~i~iwd~  445 (622)
                       +++|+.++.
T Consensus       244 -~~rI~~i~~  252 (260)
T d1rwia_         244 -NDRVVKLTS  252 (260)
T ss_dssp             -GTEEEEECC
T ss_pred             -CCEEEEEeC
Confidence             666665543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=1.1e-08  Score=95.32  Aligned_cols=226  Identities=9%  Similarity=0.013  Sum_probs=151.2

Q ss_pred             CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc-ee--e
Q psy2110         238 PVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH-QI--V  314 (622)
Q Consensus       238 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~--~  314 (622)
                      .+..++++|||+++++...+++|+.|+.. ++..........+.+++|.++++ ++++...++.+..++..... ..  .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeec
Confidence            57789999999999998889999999855 55555566778899999999997 67777777777777765432 11  1


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec----------CCCCEEEEEEcCCCCEEEEEeCCC
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA----------STTAIKSIEFARRGNCLLVNTGDR  384 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~d~  384 (622)
                      ...........+++.++|+++++.+.++.+..++...+........          .......+.++.+ ..+++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCCC
Confidence            1123345577899999999999888899999999887654332221          1223556666532 3444456678


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEe--cCCCCce
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILH--GTKGELL  462 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v  462 (622)
                      .|+.++.....      .......+   ........++|+++|++.++... ++.|..++.. |+......  ..... +
T Consensus       186 ~i~~~~~~~~~------~~~~~~~~---~~~~~pdgia~d~dG~l~va~~~-~~~V~~i~p~-G~~~~~~~~~~~~~~-p  253 (302)
T d2p4oa1         186 LLLRIPVDSTD------KPGEPEIF---VEQTNIDDFAFDVEGNLYGATHI-YNSVVRIAPD-RSTTIIAQAEQGVIG-S  253 (302)
T ss_dssp             EEEEEEBCTTS------CBCCCEEE---EESCCCSSEEEBTTCCEEEECBT-TCCEEEECTT-CCEEEEECGGGTCTT-E
T ss_pred             eEEeccccccc------cccccccc---cCCCCCcceEECCCCCEEEEEcC-CCcEEEECCC-CCEEEEEecCCCCCC-c
Confidence            88888876311      11111111   11222346899999997777665 7789888765 44333333  22233 8


Q ss_pred             eEEEE---CCCCCEEEEEe
Q psy2110         463 LDVVW---HPVRPIIASIS  478 (622)
Q Consensus       463 ~~v~~---sp~~~~l~s~~  478 (622)
                      ++++|   ++|++.|+.++
T Consensus       254 t~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEE
T ss_pred             eEEEEcCCCCCCCEEEEEC
Confidence            89999   77888887665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=2.5e-09  Score=99.86  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=154.3

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      ..++++|||+++++...+++|..|+... +. ..+....           ..+.+++|+++|+++++...++.+..++..
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~-----------~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVE-----------GKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECS-----------SEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCC-----------CCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            5899999999999998899998888543 22 2221111           347899999999999988888888888765


Q ss_pred             CCc-eEEEe--ccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-----------CCCeEEEEEeCCCC
Q psy2110         225 TRG-IAKII--SAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF-----------PSPILKVQFHPRND  290 (622)
Q Consensus       225 ~~~-~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~  290 (622)
                      ... ....+  .......+.+++.++++++++.+.++.+..++...+........           ......+.+.  +.
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~  175 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GN  175 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TT
T ss_pred             ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CC
Confidence            432 12222  12345688999999999888888888999999887764433321           1234455554  56


Q ss_pred             eEEEEeeCCCcEEEEEecCCceeeccc--CCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE--EEecCCCCEE
Q psy2110         291 HMFLVCPMRHAAVLVDTDGDHQIVPID--EDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA--SFKASTTAIK  366 (622)
Q Consensus       291 ~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~  366 (622)
                      .++++....+.++.++...........  ........++++++|.++++...++.|..++.. ++...  .....-...+
T Consensus       176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCce
Confidence            788888889999998887543222111  122334568999999988888888999999865 44332  3334445688


Q ss_pred             EEEE---cCCCCEEEEEeCC
Q psy2110         367 SIEF---ARRGNCLLVNTGD  383 (622)
Q Consensus       367 ~~~~---s~~~~~l~~~~~d  383 (622)
                      +++|   ++|++.|++++..
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCCCCCEEEEECCC
Confidence            9999   6788888776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=1.1e-07  Score=87.21  Aligned_cols=239  Identities=11%  Similarity=0.197  Sum_probs=162.5

Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCC-EEEEE-eCCCeEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAVG-CNDGRIVL  220 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg~i~i  220 (622)
                      ..+.++++++|+++++-..++.|++||.+ |+.+..+.......  +.   ......+++.++.. .+++. +.++.|..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~--~~---~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD--SQ---LLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSST--TC---BSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCc--cc---ccccccccccccccccceeccCCcccccc
Confidence            34699999999988887778899999964 55555443221111  00   01234555555543 44333 34556777


Q ss_pred             EEcCCCceEEEec-cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCeEEEEEeCCCCeEEEEe
Q psy2110         221 WDFLTRGIAKIIS-AHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR---FPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       221 wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      ++. .+.....+. ........+++.++|..+++....+.+.+++. +++.+..+.   .......+++.+++. ++++.
T Consensus        98 ~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d  174 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISD  174 (279)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEE
T ss_pred             ccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecccee-EEeee
Confidence            764 455555553 34456788999999998888777778888885 466666664   345677888888775 67777


Q ss_pred             eCCCcEEEEEecCCceeecc--cCCCCceEEEEEeeCCCEEEEEec-CCeEEEEeCCCccEEEEEecC--CCCEEEEEEc
Q psy2110         297 PMRHAAVLVDTDGDHQIVPI--DEDSDLSIVASFDRRGQHVVTGNS-KGKVLVLSCPALELKASFKAS--TTAIKSIEFA  371 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s  371 (622)
                      ...+.|++|+.... .+..+  .........++++++|+.+++-.. ++.|.+|+ .+++.+..+...  ......+++.
T Consensus       175 ~~~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         175 NRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ccccceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEe
Confidence            88889999997654 33333  234445678999999997777544 45799998 568887777533  3457899999


Q ss_pred             CCCCEEEEEeCCCcEEEEeccc
Q psy2110         372 RRGNCLLVNTGDRLIRVYNHQE  393 (622)
Q Consensus       372 ~~~~~l~~~~~d~~i~i~d~~~  393 (622)
                      ++|. |++++.++.|++|....
T Consensus       253 ~dG~-l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         253 DDGS-VVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             TTTE-EEEEETTTEEEEEECSC
T ss_pred             CCCc-EEEEeCCCeEEEEEeee
Confidence            9997 55566789999999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.15  E-value=5.1e-08  Score=91.39  Aligned_cols=226  Identities=12%  Similarity=0.067  Sum_probs=152.6

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC----CCeEEE
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN----DGRIVL  220 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~i  220 (622)
                      ..++|.++|++.++-...+.|..|+..++.....+....           .....++++++|+++++...    .+.+..
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~-----------~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK-----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS-----------SSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC-----------CCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            478999999977777778889989877754443332211           23578999999998877543    233555


Q ss_pred             EEcCCCceEEEecc--CCcCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeE
Q psy2110         221 WDFLTRGIAKIISA--HMHPVCSISWSRNGYKIISAST------DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHM  292 (622)
Q Consensus       221 wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  292 (622)
                      .+..+.........  -....+.+++.++|++.++...      .+.+..++...+........-.....++|+|+++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~l  191 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVL  191 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceE
Confidence            55544444433322  1235778999999986665432      123666665544444333333456789999999988


Q ss_pred             EEEeeCCCcEEEEEecCCcee--------ecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecC---
Q psy2110         293 FLVCPMRHAAVLVDTDGDHQI--------VPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKAS---  361 (622)
Q Consensus       293 ~~~~~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  361 (622)
                      +++-+..+.|+.|++......        ............++++.+|++.++....+.|.+|+. .++.+..+...   
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD  270 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence            888888999999998643211        111112223557899999998888888999999995 68888887633   


Q ss_pred             ---CCCEEEEEEcCCCCEEEEEeC
Q psy2110         362 ---TTAIKSIEFARRGNCLLVNTG  382 (622)
Q Consensus       362 ---~~~i~~~~~s~~~~~l~~~~~  382 (622)
                         ...+++++|.+++..+++.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcCceeeeEEEeCCCCEEEEEcC
Confidence               345789999998887776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.10  E-value=1.1e-07  Score=88.68  Aligned_cols=241  Identities=14%  Similarity=0.127  Sum_probs=151.7

Q ss_pred             cCeeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEEeC-----CCCeEEEEEeCCCCeEEEEeeCCCcEEE
Q psy2110         237 HPVCSISWSRNGYKIISAST-------DNNVCIWDVLTGECEQKYRF-----PSPILKVQFHPRNDHMFLVCPMRHAAVL  304 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~i~~  304 (622)
                      .....++|.++|+.+++...       +++|..||..++........     ......+.+.+++..++++ .....+..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va-d~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE-ECCCeEEE
Confidence            34567899999987765432       36788999888775544321     1346789999998865554 45566788


Q ss_pred             EEecCCceeecccCCCC----ceEEEEEeeCCCEEEEEec---------------CCeEEEEeCCCccEEEEEecCCCCE
Q psy2110         305 VDTDGDHQIVPIDEDSD----LSIVASFDRRGQHVVTGNS---------------KGKVLVLSCPALELKASFKASTTAI  365 (622)
Q Consensus       305 ~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i  365 (622)
                      ++...............    ....++++++|.+.++...               .|.|..++.. ++...... .-..-
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Cccee
Confidence            88766543322221111    2457899999988887432               2455555543 44333222 22345


Q ss_pred             EEEEEcCCCC----EEEE-EeCCCcEEEEecccccccCCCCCCCcceeeecccc--ceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         366 KSIEFARRGN----CLLV-NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVN--KTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       366 ~~~~~s~~~~----~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                      +.++|+|++.    .|++ -+..+.|+.|++...      +.....+.+.....  ......+++..+|++.++... .+
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~------g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-~g  247 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-SS  247 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-TT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCc------cccceeeEEEEccccccccceeeEEecCCcEEEEEcC-CC
Confidence            7899998764    4444 466788999987631      11111111111111  112346899999998776655 78


Q ss_pred             eEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEE-EEe-CCcEEEeecC
Q psy2110         439 ALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIA-SIS-SGVVSLWAQN  488 (622)
Q Consensus       439 ~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-s~~-dg~v~iw~~~  488 (622)
                      .|++|+.+.++.+..+..+... +++++|.|+++.|+ +.+ .|.|...++.
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~-~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEK-PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSC-EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEeCCCCEEEEEEECCCCC-EEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            9999999888877777766555 89999999998554 444 6877777664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.00  E-value=7.2e-07  Score=83.32  Aligned_cols=230  Identities=14%  Similarity=0.139  Sum_probs=146.0

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeC----CCcEEEEEecCCc
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPM----RHAAVLVDTDGDH  311 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~  311 (622)
                      ..+..++|.++|++.++-...+.|..|+..+++....+. .......++++++|. ++++...    .+.+...+.....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCce
Confidence            345689999999977776678899999988776655543 566788999999997 4444322    2234444444433


Q ss_pred             eeeccc--CCCCceEEEEEeeCCCEEEEEec------CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eC
Q psy2110         312 QIVPID--EDSDLSIVASFDRRGQHVVTGNS------KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TG  382 (622)
Q Consensus       312 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~  382 (622)
                      ......  ........++++++|++.++...      .+.+..++..... +..+...-...+.++|+|+++.|.++ +.
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEeccc
Confidence            222221  22344667899999987776432      2346666654333 33333233456789999999977655 55


Q ss_pred             CCcEEEEecccccccCCCCCCCcceee-----eccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecC
Q psy2110         383 DRLIRVYNHQEVLNAGKDGDPEPIQKL-----QDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGT  457 (622)
Q Consensus       383 d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  457 (622)
                      .+.|+.|++..        ........     ...........+++.++|++.++... .+.|.+|+. .|+.+..+..+
T Consensus       198 ~~~I~~~d~~~--------~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         198 ANRLHRIALED--------DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             GTEEEEEEECT--------TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECT
T ss_pred             CCceEEEEEcC--------CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-CCEEEEECC-CCcEEEEEeCC
Confidence            78899999863        11111111     11111122346899999997777665 889999995 68888887643


Q ss_pred             CC-----CceeEEEECCCCCEEEEEe
Q psy2110         458 KG-----ELLLDVVWHPVRPIIASIS  478 (622)
Q Consensus       458 ~~-----~~v~~v~~sp~~~~l~s~~  478 (622)
                      ..     ..+++++|.|.+..++...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         268 GRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            21     1278999999887665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.94  E-value=1.3e-06  Score=80.35  Aligned_cols=220  Identities=12%  Similarity=0.024  Sum_probs=154.5

Q ss_pred             EEEEcCCCC-EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         146 TCAFNKRGT-LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       146 ~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      +..|.+... +..+=-..+.|..||..+++.. .+...            ..+.++++.++|+++++ +. ..+.++|..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~------------~~~~~i~~~~dg~l~va-~~-~gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP------------FMGSALAKISDSKQLIA-SD-DGLFLRDTA   86 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS------------SCEEEEEEEETTEEEEE-ET-TEEEEEETT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC------------CCcEEEEEecCCCEEEE-Ee-CccEEeecc
Confidence            556776544 4444345678888988876432 22221            23678889899877765 44 468999998


Q ss_pred             CCceEEEecc----CCcCeeEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEe
Q psy2110         225 TRGIAKIISA----HMHPVCSISWSRNGYKIISAST----DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVC  296 (622)
Q Consensus       225 ~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  296 (622)
                      +++.......    ....++.+.+.++|++.++...    .+.-.+|.+..++.......-.....++|+++++.++++.
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred             cceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEee
Confidence            8875443321    1235788999999986665432    2345677777777666665445678899999999999998


Q ss_pred             eCCCcEEEEEecCCc--------eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEE
Q psy2110         297 PMRHAAVLVDTDGDH--------QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSI  368 (622)
Q Consensus       297 ~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  368 (622)
                      +..+.|+.+++....        ..............++++.+|++.++.-..+.|..|| .+++.+..+......++++
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~  245 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCP  245 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEE
Confidence            999999999875321        1122333455677899999999888877888999999 4688999998877789999


Q ss_pred             EEc-CCCCEEEEEe
Q psy2110         369 EFA-RRGNCLLVNT  381 (622)
Q Consensus       369 ~~s-~~~~~l~~~~  381 (622)
                      +|- ++.+.|++.+
T Consensus       246 ~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         246 AFIGPDASRLLVTS  259 (295)
T ss_dssp             EEESTTSCEEEEEE
T ss_pred             EEeCCCCCEEEEEE
Confidence            995 6777666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=1.9e-07  Score=85.70  Aligned_cols=235  Identities=10%  Similarity=0.140  Sum_probs=132.8

Q ss_pred             EEcCC--CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeC-C--
Q psy2110          88 CFSGD--GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCN-D--  162 (622)
Q Consensus        88 ~~sp~--~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-d--  162 (622)
                      ..|||  |+.+|..+.  +.|.+.|+.+++.. .+..+.+..                 ...+|||||+.||.... +  
T Consensus         5 ~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~-~Lt~~~~~~-----------------~~p~~SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC--DDLWEHDLKSGSTR-KIVSNLGVI-----------------NNARFFPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CEEEEEETTEEEEEET--TEEEEEETTTCCEE-EEECSSSEE-----------------EEEEECTTSSEEEEEEEESTT
T ss_pred             ccCCCCCCCEEEEEeC--CcEEEEECCCCCEE-EEecCCCcc-----------------cCEEECCCCCEEEEEEeeCCC
Confidence            46799  999998873  67999999988765 455555555                 48899999999986542 2  


Q ss_pred             ---CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC------CeEEEEEcCCCceEEEec
Q psy2110         163 ---GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND------GRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       163 ---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iwd~~~~~~~~~~~  233 (622)
                         ..|.+++..+++..+.......     ...........+|+|+|+.|+.....      ..+...+...+.....  
T Consensus        65 ~~~~~i~~~~~~~g~~~~lt~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  137 (281)
T d1k32a2          65 LNTADLYFYNGENGEIKRITYFSGK-----STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--  137 (281)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCCEE-----EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--
T ss_pred             CCceEEEEEEecCCceEEeeecCCC-----ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--
Confidence               2366677777654433211100     00001234678999999999876432      2345555554443222  


Q ss_pred             cCCcCeeEEEEcCCCCEEEEE-eCCC-----------cEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC--
Q psy2110         234 AHMHPVCSISWSRNGYKIISA-STDN-----------NVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMR--  299 (622)
Q Consensus       234 ~~~~~v~~~~~s~~~~~l~s~-~~d~-----------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--  299 (622)
                       +....... +.+++..++.. ....           ..........................++++  .++.....+  
T Consensus       138 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  213 (281)
T d1k32a2         138 -NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGF  213 (281)
T ss_dssp             -CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSS
T ss_pred             -cCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecc--ccceecccccc
Confidence             22233333 33444444332 2211           122222233333333344455556666654  344444333  


Q ss_pred             CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEE
Q psy2110         300 HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKA  356 (622)
Q Consensus       300 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  356 (622)
                      ..+.++|+.+............  ....|+|+|+.|+.. .++.|+++|+.+++...
T Consensus       214 ~~l~~~d~~g~~~~~lt~~~~~--~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         214 GQIYSTDLDGKDLRKHTSFTDY--YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CEEEEEETTSCSCEECCCCCSS--CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cceEEEeCCCCceEEeecCCCc--ccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            3577778776544332222222  234689999988764 46789999998887554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.85  E-value=1.7e-07  Score=85.96  Aligned_cols=229  Identities=13%  Similarity=0.140  Sum_probs=131.1

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeC-C-----CcEEEEECCCCcEEE
Q psy2110         201 AFNKR--GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAST-D-----NNVCIWDVLTGECEQ  272 (622)
Q Consensus       201 ~~s~~--g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~  272 (622)
                      ..+|+  |+.++..+ ++.|.+.|+.+++. +.+..+.+.+...+|||||++|+.... +     ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45688  99888775 56899999987765 456777788899999999999987643 2     248888888887766


Q ss_pred             EEeCC-------CCeEEEEEeCCCCeEEEEeeCCC-----cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEE-Ee
Q psy2110         273 KYRFP-------SPILKVQFHPRNDHMFLVCPMRH-----AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT-GN  339 (622)
Q Consensus       273 ~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  339 (622)
                      .....       .......|+|+++.++++.....     .+...+............   .... .+.+++..++. ..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~  158 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATH-ILFADGRRVIGRNT  158 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSE-EEEETTEEEEEESC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC---ccce-eeecCCCeEEEeec
Confidence            54322       24567899999998776643322     244455544433222211   1112 33444443333 22


Q ss_pred             cCC-----------eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCC--CcEEEEecccccccCCCCCCCc
Q psy2110         340 SKG-----------KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGD--RLIRVYNHQEVLNAGKDGDPEP  405 (622)
Q Consensus       340 ~dg-----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d--~~i~i~d~~~~~~~~~~~~~~~  405 (622)
                      ...           ............ ..............++++.  ++.. ..+  ..|+++|+..          ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g----------~~  225 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDG----------KD  225 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTS----------CS
T ss_pred             cccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc--cceecccccccceEEEeCCC----------Cc
Confidence            111           111112112222 2222333444555566553  3333 233  3577777763          11


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEE
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKI  453 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~  453 (622)
                      .+.+....   ......|||||+.|+...  ++.|+++|+.+++..+.
T Consensus       226 ~~~lt~~~---~~~~~~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         226 LRKHTSFT---DYYPRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CEECCCCC---SSCEEEEEESSSCEEEEE--TTEEEEECTTTCCEEEC
T ss_pred             eEEeecCC---CcccccCcCCCCEEEEEe--CCEEEEEECCCCCEEEe
Confidence            22222111   112237999999998865  67899999998886543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=1.8e-05  Score=72.48  Aligned_cols=226  Identities=10%  Similarity=0.001  Sum_probs=145.2

Q ss_pred             eEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc--
Q psy2110         240 CSISWSRNGYKIISA-STDNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI--  316 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--  316 (622)
                      .+..|++....|+-. -..+.|..||..+++. ..+..+..+.++++.+++. ++++ .. ..+.++|..+++.....  
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEeee
Confidence            356687654444444 3567899999888764 4566788899999998875 3443 33 46888998876543222  


Q ss_pred             cC--CCCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEE
Q psy2110         317 DE--DSDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVY  389 (622)
Q Consensus       317 ~~--~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~  389 (622)
                      ..  .......+.+.++|++.++...    .+.-.+|.+..++....+.. -..-+.++|+++++.++.+ +..+.|+.|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence            11  1234677889999988776532    23445666666665544433 3456789999999977665 557789999


Q ss_pred             ecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEEC-
Q psy2110         390 NHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWH-  468 (622)
Q Consensus       390 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~s-  468 (622)
                      +++...... .+...  ..............+++..+|++.++.-. .+.|..||. .|+.+..+.-+... +++++|- 
T Consensus       176 ~~d~~~~~~-~~~~~--~~~~~~~~~g~pdG~~vD~~GnlWva~~~-~g~V~~~dp-~G~~~~~i~lP~~~-~T~~~FGG  249 (295)
T d2ghsa1         176 PLDARTGLP-TGKAE--VFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT-DGNHIARYEVPGKQ-TTCPAFIG  249 (295)
T ss_dssp             EBCTTTCCB-SSCCE--EEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECT-TCCEEEEEECSCSB-EEEEEEES
T ss_pred             eeccccccc-ccceE--EEeccCcccccccceEEcCCCCEEeeeeC-CCceEEecC-CCcEeeEecCCCCc-eEEEEEeC
Confidence            876311100 00111  11111111223457899999987776654 778999995 68889998877655 9999995 


Q ss_pred             CCCCEEEE
Q psy2110         469 PVRPIIAS  476 (622)
Q Consensus       469 p~~~~l~s  476 (622)
                      |+.+.|+.
T Consensus       250 ~d~~~Lyv  257 (295)
T d2ghsa1         250 PDASRLLV  257 (295)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEEEE
Confidence            67665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.58  E-value=2.3e-05  Score=72.63  Aligned_cols=305  Identities=10%  Similarity=0.041  Sum_probs=175.6

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCccc---------------------------c-c--ccccceEEEEECC
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDG---------------------------A-L--DCISLAVTCAFNK  204 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---------------------------~-~--~~~~~v~~~~~s~  204 (622)
                      .+.+|+..|.|+|+-+.+++.++.+.........+                           . .  .....=..+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            35678889999999988887766554322111000                           0 0  0000112455554


Q ss_pred             ---CCCEEEEEe-CCCeEEEEEcCCCceEEEecc-CCcCeeEEEEcC--CCCEEEEEeCCC------------------c
Q psy2110         205 ---RGTLLAVGC-NDGRIVLWDFLTRGIAKIISA-HMHPVCSISWSR--NGYKIISASTDN------------------N  259 (622)
Q Consensus       205 ---~g~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~--~~~~l~s~~~d~------------------~  259 (622)
                         ||++|++.. .+.+|.+.|+.+.++.+.+.- ....+..++..+  +..+++.++...                  .
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               889888876 578899999999887664432 334566667654  455777766532                  3


Q ss_pred             EEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCC-cEEEEEecCCceeecccCCCCceEEEEEe--------e
Q psy2110         260 VCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRH-AAVLVDTDGDHQIVPIDEDSDLSIVASFD--------R  330 (622)
Q Consensus       260 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~  330 (622)
                      +.++|..+.+....+........+.++++|+++++++.... .+.+.++..          ...-..+.++        +
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta----------~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTA----------AEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC----------CSEEEEEEEEHHHHHHHHH
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhccc----------ccceEEEEechHHhHHhhh
Confidence            67899999999888887778889999999998777764322 111111111          0111111221        2


Q ss_pred             CCCEEEEEecCCeEEEEeCCCc---cEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecccccccCC-CCCCCc
Q psy2110         331 RGQHVVTGNSKGKVLVLSCPAL---ELKASFKASTTAIKSIEFARRGNCLLVNTG-DRLIRVYNHQEVLNAGK-DGDPEP  405 (622)
Q Consensus       331 ~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~-~~~~~~  405 (622)
                      +|++-..    +.+.+.|.+..   ..++.+... .....+.++|||+++++++. +.++.++|++.....-. ...++.
T Consensus       245 ~Gk~~ei----ngV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~  319 (459)
T d1fwxa2         245 AGDYQEL----NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  319 (459)
T ss_dssp             HTCSEEE----TTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred             cCCcEEe----CCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence            3332211    23667776642   233334333 23457899999999988875 88999999985433210 011111


Q ss_pred             ceeeeccccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCC----------eeEEEEecCCCCceeEE------EECC
Q psy2110         406 IQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVG----------NLVKILHGTKGELLLDV------VWHP  469 (622)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~v~~v------~~sp  469 (622)
                      ...-+ ......-..-+|+..|. ..+.-.-|.+|.-|++...          ..+..+.-|..  +-.+      .-.|
T Consensus       320 ~~~~e-~elglgPLht~fd~~g~-aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~--~gh~~~~~g~t~~~  395 (459)
T d1fwxa2         320 AVVAE-PELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ--PGHLKTVMGETLDA  395 (459)
T ss_dssp             GEEEC-CBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC--EEEEEETTTTSTTC
T ss_pred             cEEee-cccCcCccccccCCCce-EEEEeeccceEEEEecchhhhhhccccCCcceeccccccC--CCCCccCcCCcCCC
Confidence            11111 11112223458988884 4444334889999997432          44556655543  2222      2367


Q ss_pred             CCCEEEEEe
Q psy2110         470 VRPIIASIS  478 (622)
Q Consensus       470 ~~~~l~s~~  478 (622)
                      +|++|++..
T Consensus       396 dgk~l~~~n  404 (459)
T d1fwxa2         396 TNDWLVCLS  404 (459)
T ss_dssp             CSSEEEEEE
T ss_pred             CCCEEEEec
Confidence            888888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=9.3e-05  Score=68.51  Aligned_cols=193  Identities=12%  Similarity=0.085  Sum_probs=122.5

Q ss_pred             EEEEcC---CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEee
Q psy2110          86 KCCFSG---DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGC  160 (622)
Q Consensus        86 ~~~~sp---~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~  160 (622)
                      .++|..   ||+||.+....++.|.+.|+++.++.+........-.                +.+...+  +-.|++.++
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~----------------HG~r~~~~p~T~YV~~~~  152 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGI----------------HGLRPQKWPRSNYVFCNG  152 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSE----------------EEEEECCSSBCSEEEEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCC----------------ceeecccCCCeEEEEccC
Confidence            566765   8999999877778999999999998776655443321                4555544  444666665


Q ss_pred             CC------------------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCC------
Q psy2110         161 ND------------------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDG------  216 (622)
Q Consensus       161 ~d------------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------  216 (622)
                      .+                  +.+.+.|..+.+....+....            ....+.++++|+++++.+.+.      
T Consensus       153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------------~ld~~~~s~dGK~af~TsyNSE~g~~l  220 (459)
T d1fwxa2         153 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------------NLDNCDADYEGKWAFSTSYNSEKGMTL  220 (459)
T ss_dssp             CSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS------------CCCCEEECSSSSEEEEEESCTTCCSSH
T ss_pred             ccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC------------ChhccccCCCCCEEEEEeccccCCcch
Confidence            52                  235567777655544433221            234679999999998876431      


Q ss_pred             ---------eEEEEEc-----------------------CCC---ceEEEeccCCcCeeEEEEcCCCCEEEEEeC-CCcE
Q psy2110         217 ---------RIVLWDF-----------------------LTR---GIAKIISAHMHPVCSISWSRNGYKIISAST-DNNV  260 (622)
Q Consensus       217 ---------~i~iwd~-----------------------~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~i  260 (622)
                               .+.+++.                       ...   ..++.+... .....+.++|||+++++++. +.++
T Consensus       221 ~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tV  299 (459)
T d1fwxa2         221 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTV  299 (459)
T ss_dssp             HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBE
T ss_pred             hhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcE
Confidence                     1333332                       211   112222211 23467899999999988775 7899


Q ss_pred             EEEECCCC------------cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEec
Q psy2110         261 CIWDVLTG------------ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTD  308 (622)
Q Consensus       261 ~iwd~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~  308 (622)
                      .++|++.-            .........-.....+|...| +.+.+..-|..+.-|++.
T Consensus       300 SViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         300 TVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             EEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecc
Confidence            99998631            122223344456677888776 456666789999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=0.0002  Score=63.72  Aligned_cols=249  Identities=10%  Similarity=0.025  Sum_probs=158.3

Q ss_pred             CEEEEEeCCCeEEEEEcCCCce-----EEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC-CCC
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRGI-----AKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGECEQKYRF-PSP  279 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-~~~  279 (622)
                      .+|+.+. .+.|+-.+++....     ...+..+...+.+++|....+.|+-+. ..+.|+..++..+.....+.. ...
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            3444443 35777777754321     223334445678899988777776654 457788888877665555542 357


Q ss_pred             eEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec---CCeEEEEeCCCccEEE
Q psy2110         280 ILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS---KGKVLVLSCPALELKA  356 (622)
Q Consensus       280 v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  356 (622)
                      +.++++..-+..++.+....+.|.+.++..................++++|...+++....   .+.|.-.++.......
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~  160 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence            8899998878888888888889999998876543333333456788999998777765432   2345555665443333


Q ss_pred             EEecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC
Q psy2110         357 SFKASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA  435 (622)
Q Consensus       357 ~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  435 (622)
                      .....-....++++.+.++.|..+ ...+.|...++...         .....+... ..  ...+++  ++.+|.....
T Consensus       161 i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---------~~~~v~~~~-~~--P~~lav--~~~~lYwtd~  226 (263)
T d1npea_         161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---------GRRKVLEGL-QY--PFAVTS--YGKNLYYTDW  226 (263)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---------EEEEEEECC-CS--EEEEEE--ETTEEEEEET
T ss_pred             eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---------CeEEEECCC-CC--cEEEEE--ECCEEEEEEC
Confidence            333333566899999888877666 45678988888731         111112221 11  124555  3677777766


Q ss_pred             CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCC
Q psy2110         436 RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPV  470 (622)
Q Consensus       436 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~  470 (622)
                      ..+.|...|..+++.+..+..+.......++..++
T Consensus       227 ~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence            67899999999999887775444333566666543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.32  E-value=0.00044  Score=69.20  Aligned_cols=204  Identities=9%  Similarity=0.045  Sum_probs=111.5

Q ss_pred             CCCEEEEeeCCCcEEEEecC-CcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEE
Q psy2110         152 RGTLLAVGCNDGRIVLWDFL-TRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAK  230 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~  230 (622)
                      +|.+.++.+.++.|...|.. +|+.+-++.............+...-..+++.  +..++.++.++.+...|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            34333333335677777763 57766555432222111111111001123333  3467788899999999999999876


Q ss_pred             EeccCC----cCeeEEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEEEEeCCC----------------------
Q psy2110         231 IISAHM----HPVCSISWSRNGYKIISAS------TDNNVCIWDVLTGECEQKYRFPS----------------------  278 (622)
Q Consensus       231 ~~~~~~----~~v~~~~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~----------------------  278 (622)
                      ...-..    ..+++.-.-.++ .++.+.      ..|.|+-+|+.+|+.+..+....                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            654211    111111111134 444444      26789999999999988765221                      


Q ss_pred             ----------------Ce-EEEEEeCCCCeEEEEeeC---------------CCcEEEEEecCCceeecccCCCC-----
Q psy2110         279 ----------------PI-LKVQFHPRNDHMFLVCPM---------------RHAAVLVDTDGDHQIVPIDEDSD-----  321 (622)
Q Consensus       279 ----------------~v-~~~~~~~~~~~~~~~~~~---------------~~~i~~~d~~~~~~~~~~~~~~~-----  321 (622)
                                      .+ ...++.+....+++..+.               ...+.-.|.++++.+..++....     
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~  298 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF  298 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence                            11 123555555543333221               24567778888877655543211     


Q ss_pred             ----ceEEEEEeeCCC---EEEEEecCCeEEEEeCCCccEEEEE
Q psy2110         322 ----LSIVASFDRRGQ---HVVTGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       322 ----~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                          .........+++   .++.++.+|.++++|..+++++...
T Consensus       299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeee
Confidence                112222334453   4677889999999999999987543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.28  E-value=0.00049  Score=68.75  Aligned_cols=203  Identities=15%  Similarity=0.128  Sum_probs=113.4

Q ss_pred             CEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         154 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       154 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      ..|+.++.++.|.-.|..+|+.+-++.............+...-..++.  .+..++.+..++.+...|..+++.+....
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            3566667778888889888887766542221111000000000011111  13467888889999999999999887765


Q ss_pred             cCCc-CeeEEEEcC---CCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCC-------------------------
Q psy2110         234 AHMH-PVCSISWSR---NGYKIISAST------DNNVCIWDVLTGECEQKYRFPS-------------------------  278 (622)
Q Consensus       234 ~~~~-~v~~~~~s~---~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~-------------------------  278 (622)
                      .+.. .-..+.-.|   ++ .++.+..      .|.|.-+|.++|+.+-.+....                         
T Consensus       145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence            3221 111111111   33 3444332      3679999999999998876210                         


Q ss_pred             ------Ce-EEEEEeCCCCeEEEEeeC------------------CCcEEEEEecCCceeecccCCCCc---------eE
Q psy2110         279 ------PI-LKVQFHPRNDHMFLVCPM------------------RHAAVLVDTDGDHQIVPIDEDSDL---------SI  324 (622)
Q Consensus       279 ------~v-~~~~~~~~~~~~~~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~---------~~  324 (622)
                            .+ ..+++.+....+++..+.                  ...+.-.|.++++....++.....         ..
T Consensus       224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~  303 (560)
T d1kv9a2         224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (560)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence                  01 124555655544432211                  235666677777665444322111         11


Q ss_pred             EEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEe
Q psy2110         325 VASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       325 ~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      -+.+..++   +.++.++.+|.++++|..+++++...+
T Consensus       304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence            12233344   356778899999999999999876544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=0.002  Score=57.16  Aligned_cols=240  Identities=9%  Similarity=0.005  Sum_probs=151.5

Q ss_pred             EEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----EEEEEe-CCCCeE
Q psy2110         208 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGYKIISAS-TDNNVCIWDVLTGE----CEQKYR-FPSPIL  281 (622)
Q Consensus       208 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~----~~~~~~-~~~~v~  281 (622)
                      +|+.+. ...|+..++.+......+. ....+.+++|.+..+.|+-.. ..+.|+-.++....    ....+. ....+.
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            344444 3468888988765544444 455678999998777777665 35567766665322    112222 234577


Q ss_pred             EEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEe--cCCeEEEEeCCCccEEEEEe
Q psy2110         282 KVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGN--SKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~  359 (622)
                      .+++.+.+..++.+....+.|.+.++..................++++|...+++...  ..+.|.-.++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            8999888888888888888999999987766555555556678899998766665543  34567777776444433333


Q ss_pred             cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCCC
Q psy2110         360 ASTTAIKSIEFARRGNCLLVN-TGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQH  438 (622)
Q Consensus       360 ~~~~~i~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d~  438 (622)
                      ..-...+++++++.++.|..+ ...+.|...++..        . .................+++  ++.+|..+...++
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG--------~-~~~~~~~~~~~~~~p~~lav--~~~~ly~td~~~~  229 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------G-NRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINE  229 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------C-SCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCC--------C-CEEEEEeCCCcccccEEEEE--ECCEEEEEECCCC
Confidence            344567899999988877776 4467888888862        1 11111111111111233444  3567777766578


Q ss_pred             eEEEEECCCCeeEEEEecCCCC
Q psy2110         439 ALYIWEKSVGNLVKILHGTKGE  460 (622)
Q Consensus       439 ~i~iwd~~~~~~~~~~~~~~~~  460 (622)
                      .|+..+..+|+....+......
T Consensus       230 ~I~~~~~~~g~~~~~~~~~~~~  251 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLAENLLS  251 (266)
T ss_dssp             EEEEEETTTCCCCEEEECSCSC
T ss_pred             eEEEEECCCCcceEEEEcCCCC
Confidence            8988898888777766655443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.15  E-value=0.0022  Score=64.30  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=91.9

Q ss_pred             CEEEEEeCCCeEEEEEcCCCceEEEeccCCcCe-eEEEEcC--CCCEEEEEeC------CCcEEEEECCCCcEEEEEeCC
Q psy2110         207 TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPV-CSISWSR--NGYKIISAST------DNNVCIWDVLTGECEQKYRFP  277 (622)
Q Consensus       207 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~--~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~  277 (622)
                      .+++.++.|+.|.-.|..+++.+..+....... ..+.-+|  .+..++.+..      .|.|+-+|+.+|+.+-.+...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            478889999999999999999988775321100 0111111  1334555543      488999999999998876521


Q ss_pred             C---------------------------------------CeEEEEEeCCCCeEEEEeeC---------------CCcEE
Q psy2110         278 S---------------------------------------PILKVQFHPRNDHMFLVCPM---------------RHAAV  303 (622)
Q Consensus       278 ~---------------------------------------~v~~~~~~~~~~~~~~~~~~---------------~~~i~  303 (622)
                      .                                       .-..+.+.+....+++..+.               ...+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence            0                                       01234555555544443221               23577


Q ss_pred             EEEecCCceeecccCCCC---------ceEEEE-EeeCC---CEEEEEecCCeEEEEeCCCccEEEEE
Q psy2110         304 LVDTDGDHQIVPIDEDSD---------LSIVAS-FDRRG---QHVVTGNSKGKVLVLSCPALELKASF  358 (622)
Q Consensus       304 ~~d~~~~~~~~~~~~~~~---------~~~~~~-~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  358 (622)
                      -.|.++++.+..++....         ....+. ...+|   +.++....+|.++++|..+++++...
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            788888877665443211         111111 12344   35777889999999999999987644

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=0.0023  Score=55.86  Aligned_cols=243  Identities=12%  Similarity=0.098  Sum_probs=151.3

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCCCcE
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRI  165 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i  165 (622)
                      +.-.+|..+.||.=+.  .++.++|+++.+.++.+.-...-+                  --.|-.+. .|+..+. ..|
T Consensus        67 sAIMhP~~~IiALrag--~~LQiFnletK~klks~~~~e~Vv------------------fWkWis~~-~L~lVT~-taV  124 (327)
T d1utca2          67 SAIMNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVT------------------FWKWISLN-TVALVTD-NAV  124 (327)
T ss_dssp             EEEECSSSSEEEEEET--TEEEEEETTTTEEEEEEECSSCCC------------------EEEESSSS-EEEEECS-SEE
T ss_pred             hhhcCCCCcEEEEecC--CeEEEEehhHhhhhceEEcCCCcE------------------EEEecCCC-EEEEEcC-Cce
Confidence            5677899998888663  689999999999999888777655                  44665544 3444333 579


Q ss_pred             EEEecCCc-ccccccccccCCCcccccccccceEEEEECCCCCEEEEEe-------CCCeEEEEEcCCCceEEEeccCCc
Q psy2110         166 VLWDFLTR-GIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGC-------NDGRIVLWDFLTRGIAKIISAHMH  237 (622)
Q Consensus       166 ~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~  237 (622)
                      +-|+++.. ...+.+..+..-       ....|.....+++.++++..+       -.|.+.+|..+. +..+.+.+|.+
T Consensus       125 YHW~~~g~s~P~k~fdR~~~L-------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa  196 (327)
T d1utca2         125 YHWSMEGESQPVKMFDRHSSL-------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA  196 (327)
T ss_dssp             EEEESSSSCCCEEEEECCGGG-------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEE
T ss_pred             EEEcccCCCCchhhhhhcccc-------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceee
Confidence            99998543 333444333211       124688888999999876543       146788999754 45567888876


Q ss_pred             CeeEEEEcCCC---CEEEEEeC---CCcEEEEECCCCcEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         238 PVCSISWSRNG---YKIISAST---DNNVCIWDVLTGECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       238 ~v~~~~~s~~~---~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      ....+.+..+.   +.|+.+..   .+.+.|.++.+...- ...+......+-|.|+                       
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g-~~~f~kk~vdi~fppe-----------------------  252 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTG-NQPFPKKAVDVFFPPE-----------------------  252 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTT-CCCCCCEEEECCCCTT-----------------------
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccC-CCCCcceeEEEECCcc-----------------------
Confidence            65555443221   23333322   134555554331100 0000011111222222                       


Q ss_pred             eeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy2110         312 QIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRV  388 (622)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i  388 (622)
                            ...+...++..++.-..++.-+.-|.+++||+.++.++..-+-....|...+-+.+..-++....+|.|..
T Consensus       253 ------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         253 ------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             ------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence                  12345567788888888888899999999999999999988877777776665555555666667776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.12  E-value=0.0028  Score=63.29  Aligned_cols=320  Identities=13%  Similarity=0.138  Sum_probs=164.0

Q ss_pred             EEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccce-EEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEec
Q psy2110         155 LLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLA-VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIIS  233 (622)
Q Consensus       155 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~  233 (622)
                      .|++++.++.|.-+|..+|+.+-.+......... .......+ ..+.+.  ...++.++.++.+...|..+++.+....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~-~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTG-FKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGG-GGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccc-cccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            5666677788888898888877665432211100 00000000 112222  2356777889999999999999886654


Q ss_pred             cCCcCe--eEEEEcC--CCCEEEEEeC------CCcEEEEECCCCcEEEEEeCCC-------------------------
Q psy2110         234 AHMHPV--CSISWSR--NGYKIISAST------DNNVCIWDVLTGECEQKYRFPS-------------------------  278 (622)
Q Consensus       234 ~~~~~v--~~~~~s~--~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~-------------------------  278 (622)
                      ......  ..+.-.|  -+..++.++.      .|.|+.+|.++|+.+-.+....                         
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~  235 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence            321111  1111111  1234554432      4679999999999988775210                         


Q ss_pred             -------Ce-EEEEEeCCCCeEEEEee------------------CCCcEEEEEecCCceeecccCCC---------Cce
Q psy2110         279 -------PI-LKVQFHPRNDHMFLVCP------------------MRHAAVLVDTDGDHQIVPIDEDS---------DLS  323 (622)
Q Consensus       279 -------~v-~~~~~~~~~~~~~~~~~------------------~~~~i~~~d~~~~~~~~~~~~~~---------~~~  323 (622)
                             .+ ....+.+....+++..+                  ....+.-.|.++++.....+...         ...
T Consensus       236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~  315 (573)
T d1kb0a2         236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM  315 (573)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred             eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence                   01 12344454443332211                  11234555555554443322211         111


Q ss_pred             EEEEEeeCC---CEEEEEecCCeEEEEeCCCccEEEEEecCCCC-----------------------------------E
Q psy2110         324 IVASFDRRG---QHVVTGNSKGKVLVLSCPALELKASFKASTTA-----------------------------------I  365 (622)
Q Consensus       324 ~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------------------------------i  365 (622)
                      .......++   ..++.++.+|.++++|..+++.+...+.....                                   -
T Consensus       316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w  395 (573)
T d1kb0a2         316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW  395 (573)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred             eecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccc
Confidence            222233333   45677889999999999999987655421100                                   1


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecccccccCC-CCCC-------------------C---cceeeeccccceeee---
Q psy2110         366 KSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGK-DGDP-------------------E---PIQKLQDLVNKTMWK---  419 (622)
Q Consensus       366 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~-------------------~---~~~~~~~~~~~~~~~---  419 (622)
                      ..++++|+...+++...+....++.......... .+.+                   .   .+..+.....+..+.   
T Consensus       396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~  475 (573)
T d1kb0a2         396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH  475 (573)
T ss_dssp             SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecC
Confidence            1346778877777766655544443321110000 0000                   0   011111111111110   


Q ss_pred             -----eEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEEe
Q psy2110         420 -----KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASIS  478 (622)
Q Consensus       420 -----~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~~  478 (622)
                           .-..+-.|.+|++|+. |+.++.+|.++|+.+-.+....+..-.-+.|.-+|+ +|+..+
T Consensus       476 ~~p~~gg~lstagglVF~G~~-dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         476 VSPWNGGTLTTAGNVVFQGTA-DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             SSSCCCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCCCCceEEEcCCEEEEECC-CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence                 0122336778888876 899999999999999887654431111245555776 554433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.003  Score=56.05  Aligned_cols=233  Identities=6%  Similarity=-0.087  Sum_probs=140.1

Q ss_pred             EEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee-CCCcEEEEecCCc
Q psy2110          95 YVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC-NDGRIVLWDFLTR  173 (622)
Q Consensus        95 ~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~  173 (622)
                      +|+.+..  ..|+-.++.+.+....+.+....                  .++.|.+..+.|+-.. ..+.|+--++...
T Consensus         3 fLl~s~~--~~I~~~~l~~~~~~~~~~~~~~~------------------~~id~d~~~~~lYw~D~~~~~I~~~~l~~~   62 (266)
T d1ijqa1           3 YLFFTNR--HEVRKMTLDRSEYTSLIPNLRNV------------------VALDTEVASNRIYWSDLSQRMICSTQLDRA   62 (266)
T ss_dssp             EEEEECB--SSEEEEETTSCCCEEEECSCSSE------------------EEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred             EEEEECC--CeEEEEECCCCcceeeeCCCCce------------------EEEEEEeCCCEEEEEECCCCEEEEEEecCC
Confidence            4555553  46888898866554444433332                  4889998887777654 4455665555432


Q ss_pred             ccc---cccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceEEEeccCCcCeeEEEEcCCCC
Q psy2110         174 GIA---KIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWDFLTRGIAKIISAHMHPVCSISWSRNGY  249 (622)
Q Consensus       174 ~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  249 (622)
                      ...   ..+....          ...+..+++.+.++.|+.+ ...+.|.+.++........+.........+++.|...
T Consensus        63 ~~~~~~~~~~~~~----------~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g  132 (266)
T d1ijqa1          63 HGVSSYDTVISRD----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (266)
T ss_dssp             -----CEEEECSS----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             CCCcceEEEEeCC----------CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC
Confidence            111   1111110          1234578888766666655 4567899999887665555665566788999998666


Q ss_pred             EEEEEeC--CCcEEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecccC--CCCceE
Q psy2110         250 KIISAST--DNNVCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPIDE--DSDLSI  324 (622)
Q Consensus       250 ~l~s~~~--d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~  324 (622)
                      +|+....  .+.|.-.++.......... .-....++++.+.++.++.+-...+.|...++.+.........  ......
T Consensus       133 ~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~  212 (266)
T d1ijqa1         133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF  212 (266)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred             eEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccE
Confidence            6655443  3457777776555544443 2356789999998888888878888899989876543322222  222344


Q ss_pred             EEEEeeCCCEEEE-EecCCeEEEEeCCCccEEEEEe
Q psy2110         325 VASFDRRGQHVVT-GNSKGKVLVLSCPALELKASFK  359 (622)
Q Consensus       325 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~  359 (622)
                      .+++.  +.+|+. -..++.|...+..+++....+.
T Consensus       213 ~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         213 SLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            55554  334444 3456677777766665444444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.06  E-value=0.00075  Score=67.47  Aligned_cols=204  Identities=13%  Similarity=0.092  Sum_probs=119.5

Q ss_pred             eeEEEEcCCCCEEEEecCC---------------CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEE
Q psy2110          84 WKKCCFSGDGEYVCAGSAR---------------QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCA  148 (622)
Q Consensus        84 ~~~~~~sp~~~~l~~~~~~---------------~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  148 (622)
                      +...++.+....+..+...               ...+...|.++|+.+..++.+...+.        ..++........
T Consensus       237 W~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~W--------d~D~~~~~~l~~  308 (571)
T d2ad6a1         237 WGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW--------DFAGVNQMVLTD  308 (571)
T ss_dssp             CSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS--------CCCCCCCCEEEE
T ss_pred             ccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccc--------ccccccccceee
Confidence            4456777777766654431               24688889999999988876544432        011111112223


Q ss_pred             EcCCCC---EEEEeeCCCcEEEEecCCcccccccccccCC-----------------------Ccccccccc-----cce
Q psy2110         149 FNKRGT---LLAVGCNDGRIVLWDFLTRGIAKIISAHMHP-----------------------EFDGALDCI-----SLA  197 (622)
Q Consensus       149 ~s~d~~---~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-----~~v  197 (622)
                      ...+++   .++.++.+|.+.+.|..+|+.+.........                       ...+...+.     ..-
T Consensus       309 ~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w  388 (571)
T d2ad6a1         309 QPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQ  388 (571)
T ss_dssp             EEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCS
T ss_pred             eeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEecccccccc
Confidence            333454   5677889999999999998865322111000                       000000000     000


Q ss_pred             EEEEECCCCCEEEEEeCC-------------------------------------CeEEEEEcCCCceEEEeccCCcCee
Q psy2110         198 VTCAFNKRGTLLAVGCND-------------------------------------GRIVLWDFLTRGIAKIISAHMHPVC  240 (622)
Q Consensus       198 ~~~~~s~~g~~l~~~~~d-------------------------------------g~i~iwd~~~~~~~~~~~~~~~~v~  240 (622)
                      ...+++|+..++++...+                                     |.|.-+|+.+++.+.+.........
T Consensus       389 ~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~  468 (571)
T d2ad6a1         389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG  468 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred             ccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCc
Confidence            124677776666553322                                     4677788888888766543221111


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEE--EEEeCCCCeEEEEe
Q psy2110         241 SISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILK--VQFHPRNDHMFLVC  296 (622)
Q Consensus       241 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~  296 (622)
                      .. .+-.+.++++++.||.++.+|.++|+.+-.++....+.+  +.|..+|+.++++.
T Consensus       469 g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         469 GT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             BC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             ce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEE
Confidence            11 122456788899999999999999999999986655443  56666887666543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.05  E-value=0.0058  Score=60.73  Aligned_cols=166  Identities=14%  Similarity=0.023  Sum_probs=94.3

Q ss_pred             CCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcC--CCCEEEEee------CCCc
Q psy2110          93 GEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNK--RGTLLAVGC------NDGR  164 (622)
Q Consensus        93 ~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~------~dg~  164 (622)
                      +..++.+..+ +.|.-.|..+|+.+.....+.....                ..+.-.|  ....++.+.      ..|.
T Consensus       117 ~~~v~~~~~~-g~l~Alda~tG~~~w~~~~~~~~~~----------------~~~~~~p~v~~~~vivg~~~~~~~~~G~  179 (560)
T d1kv9a2         117 GDKVYVGTLD-GRLIALDAKTGKAIWSQQTTDPAKP----------------YSITGAPRVVKGKVIIGNGGAEYGVRGF  179 (560)
T ss_dssp             BTEEEEECTT-SEEEEEETTTCCEEEEEECSCTTSS----------------CBCCSCCEEETTEEEECCBCTTTCCBCE
T ss_pred             CCeEEEEeCC-CEEEEEECCCCcEEeccCccCcccc----------------eeeeeeeeeecCcccccccceeccccce
Confidence            3456666654 8999999999999987764432210                0111111  122333332      2367


Q ss_pred             EEEEecCCcccccccccccCCCcccc--------------------cccccceEEEEECCCCCEEEEEeC----------
Q psy2110         165 IVLWDFLTRGIAKIISAHMHPEFDGA--------------------LDCISLAVTCAFNKRGTLLAVGCN----------  214 (622)
Q Consensus       165 i~vw~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~v~~~~~s~~g~~l~~~~~----------  214 (622)
                      |+-+|..+|+.+-.+...........                    ......-..+++.+...+++.+..          
T Consensus       180 v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~  259 (560)
T d1kv9a2         180 VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVR  259 (560)
T ss_dssp             EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred             EEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccc
Confidence            99999999988766643211100000                    000001123566777776665431          


Q ss_pred             ---------CCeEEEEEcCCCceEEEeccCCcCeeE---------EEEcCCCC---EEEEEeCCCcEEEEECCCCcEEEE
Q psy2110         215 ---------DGRIVLWDFLTRGIAKIISAHMHPVCS---------ISWSRNGY---KIISASTDNNVCIWDVLTGECEQK  273 (622)
Q Consensus       215 ---------dg~i~iwd~~~~~~~~~~~~~~~~v~~---------~~~s~~~~---~l~s~~~d~~i~iwd~~~~~~~~~  273 (622)
                               ...|...|+++++....++...+.+..         +....+++   .++.+..+|.+.++|..+++.+..
T Consensus       260 ~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~  339 (560)
T d1kv9a2         260 SPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (560)
T ss_dssp             STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             cccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccc
Confidence                     245777788999988766643332221         11222342   566788899999999999998876


Q ss_pred             Ee
Q psy2110         274 YR  275 (622)
Q Consensus       274 ~~  275 (622)
                      ..
T Consensus       340 ~~  341 (560)
T d1kv9a2         340 EK  341 (560)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=0.0032  Score=54.89  Aligned_cols=264  Identities=9%  Similarity=0.128  Sum_probs=155.3

Q ss_pred             CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEE
Q psy2110         163 GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSI  242 (622)
Q Consensus       163 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  242 (622)
                      ..|.|-|+..+....+....              .-+.-.+|..+.||.-+ ...+.+||+++.+.++.+.-. .+|.--
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~--------------AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfW  108 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS--------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFW  108 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC--------------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred             ceEEEEECCCCCcceecccc--------------hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEE
Confidence            46888888765432221111              22456789888888776 568999999999988877644 467677


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEe-C----CCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeecc
Q psy2110         243 SWSRNGYKIISASTDNNVCIWDVLTG-ECEQKYR-F----PSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPI  316 (622)
Q Consensus       243 ~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  316 (622)
                      .|-.+. .|+... +..|+-|+++.. .+.+.+. +    ...|.....+++.++++++|-                   
T Consensus       109 kWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI-------------------  167 (327)
T d1utca2         109 KWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI-------------------  167 (327)
T ss_dssp             EESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE-------------------
T ss_pred             EecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeE-------------------
Confidence            776544 555554 467999999542 4566665 2    245677777777777666651                   


Q ss_pred             cCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCC---CEEEEEe---CCCcEEEEe
Q psy2110         317 DEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRG---NCLLVNT---GDRLIRVYN  390 (622)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~---~d~~i~i~d  390 (622)
                                  +++...++     |.+.+|..+. +.-+.+++|...-..+.+.-+.   +.++.+.   ..+.+++.+
T Consensus       168 ------------~~~~~~i~-----G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE  229 (327)
T d1utca2         168 ------------SAQQNRVV-----GAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  229 (327)
T ss_dssp             ------------EEETTEEE-----EEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             ------------ecCCCcee-----EEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence                        12222222     5788888764 4555667775444444332211   2333332   236788888


Q ss_pred             cccccccCCCCCCCcceeeecc-ccceeeeeEEEcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECC
Q psy2110         391 HQEVLNAGKDGDPEPIQKLQDL-VNKTMWKKCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHP  469 (622)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp  469 (622)
                      +.........-..+.+..+..+ ....--.++..|+.-..+..-+. -|.|++||+.++.++..-+-..+. |...+-+.
T Consensus       230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK-~G~i~lyDleTgt~i~~nRIs~~~-iF~~a~~~  307 (327)
T d1utca2         230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGET-IFVTAPHE  307 (327)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSC-EEEEEEET
T ss_pred             cCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec-CcEEEEEEcccccEEEEeecCCCc-eEEeccCC
Confidence            8742211111011111111111 11122346788888788888776 899999999999998776654443 55444444


Q ss_pred             CCCEEEEEe-CCcEE
Q psy2110         470 VRPIIASIS-SGVVS  483 (622)
Q Consensus       470 ~~~~l~s~~-dg~v~  483 (622)
                      ...-++... +|.|.
T Consensus       308 ~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         308 ATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTEEEEEETTSEEE
T ss_pred             CCceEEEECCCCeEE
Confidence            444444444 66654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.04  E-value=0.0013  Score=62.44  Aligned_cols=237  Identities=10%  Similarity=0.064  Sum_probs=122.8

Q ss_pred             EEEEcCCCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEeeCC---
Q psy2110          86 KCCFSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGCND---  162 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---  162 (622)
                      ..++.++|+.++.|+.+...+.+||..+..-...-......-                -.+++..+||++++.|+.+   
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~----------------~~~~~~~~dG~v~v~GG~~~~~  143 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG----------------YQSSATMSDGRVFTIGGSWSGG  143 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS----------------SCEEEECTTSCEEEECCCCCSS
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCccccccccccccc----------------ccceeeecCCceeeeccccccc
Confidence            568899999999998766789999998776543221111111                1367778899999988753   


Q ss_pred             ---CcEEEEecCCcccccccccccC----CCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe--c
Q psy2110         163 ---GRIVLWDFLTRGIAKIISAHMH----PEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII--S  233 (622)
Q Consensus       163 ---g~i~vw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~--~  233 (622)
                         ..+.+||..+.+-...-.....    ......... ..-..+...++|+.++.+...+.+.+++..+.......  .
T Consensus       144 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  222 (387)
T d1k3ia3         144 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ  222 (387)
T ss_dssp             SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred             cccceeeeecCCCCceeecCCCcccccccccccceeec-cceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccc
Confidence               4689999887643211110000    000000000 01112334467777777777777777777665432211  1


Q ss_pred             c----CCc--CeeEEEE-cCCCCEEEEEeCC--------CcEEEEECCCC---cEEEEEe----CCCCeEEEEEeCCCCe
Q psy2110         234 A----HMH--PVCSISW-SRNGYKIISASTD--------NNVCIWDVLTG---ECEQKYR----FPSPILKVQFHPRNDH  291 (622)
Q Consensus       234 ~----~~~--~v~~~~~-s~~~~~l~s~~~d--------~~i~iwd~~~~---~~~~~~~----~~~~v~~~~~~~~~~~  291 (622)
                      .    +..  .-.++.+ ..+++.++.|+..        ....+.++...   .......    ....-.+....++++ 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~-  301 (387)
T d1k3ia3         223 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-  301 (387)
T ss_dssp             ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-
T ss_pred             cCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCe-
Confidence            0    111  1122222 2356666666532        12333333321   1111111    112223455667777 


Q ss_pred             EEEEeeCC-----------CcEEEEEecCCce--eecccCCCCceEEEEEeeCCCEEEEEec
Q psy2110         292 MFLVCPMR-----------HAAVLVDTDGDHQ--IVPIDEDSDLSIVASFDRRGQHVVTGNS  340 (622)
Q Consensus       292 ~~~~~~~~-----------~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  340 (622)
                      +++.++.+           ..+.+||..+..-  +..+......-....+.+||+.++.|+.
T Consensus       302 i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         302 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            66666532           1467899876532  2222222211223446789999999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.004  Score=54.97  Aligned_cols=215  Identities=10%  Similarity=-0.014  Sum_probs=133.9

Q ss_pred             eEEEEcCCCCEEEEee-CCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE-eCCCeEEEEE
Q psy2110         145 VTCAFNKRGTLLAVGC-NDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG-CNDGRIVLWD  222 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~i~iwd  222 (622)
                      .+++|.+..+.|.-+. .++.|+..++..+.....+....           ..+..+++..-+..|+.+ ...+.|.+.+
T Consensus        39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~-----------~~p~~iAvD~~~~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-----------GSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-----------CCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc-----------ccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence            4889988877776654 45778888876554433332211           236788898766666654 4567899999


Q ss_pred             cCCCceEEEeccCCcCeeEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         223 FLTRGIAKIISAHMHPVCSISWSRNGYKIISASTD-NN--VCIWDVLTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~~--i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      +........+.........+++.|...+|+..... +.  |.--++.......... .-....++++.+.++.++.+-..
T Consensus       108 ~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC
Confidence            87655444444444678899999977776655432 23  4444665444333333 23466899999988888787777


Q ss_pred             CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEec-CCCCEEEEEEcC
Q psy2110         299 RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFKA-STTAIKSIEFAR  372 (622)
Q Consensus       299 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~  372 (622)
                      .+.|...++........+.... ....+++. ++....+-...+.|...|..+++.+..+.. ......+++..+
T Consensus       188 ~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            8889888887654433333322 23456664 333444444667899999888887765542 223344555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.98  E-value=0.0024  Score=60.39  Aligned_cols=274  Identities=12%  Similarity=0.093  Sum_probs=145.5

Q ss_pred             EEEECCCCCEEEEEeCC-----C------eEEEEEcCCCceEE--E-eccCCcCeeEEEEcCCCCEEEEEeCC-CcEEEE
Q psy2110         199 TCAFNKRGTLLAVGCND-----G------RIVLWDFLTRGIAK--I-ISAHMHPVCSISWSRNGYKIISASTD-NNVCIW  263 (622)
Q Consensus       199 ~~~~s~~g~~l~~~~~d-----g------~i~iwd~~~~~~~~--~-~~~~~~~v~~~~~s~~~~~l~s~~~d-~~i~iw  263 (622)
                      ..+...+|++++.|+.+     +      .+.+||..+++...  . ...|.......++.++|+.++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            34556788888888742     1      36789998876432  1 22333344567888999998888765 589999


Q ss_pred             ECCCCcEEEEEe--CCCCeEEEEEeCCCCeEEEEeeC-C-----CcEEEEEecCCceeec--c------cC-C-----CC
Q psy2110         264 DVLTGECEQKYR--FPSPILKVQFHPRNDHMFLVCPM-R-----HAAVLVDTDGDHQIVP--I------DE-D-----SD  321 (622)
Q Consensus       264 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~-~-----~~i~~~d~~~~~~~~~--~------~~-~-----~~  321 (622)
                      |..+......-.  ....-...+..++++. ++.++. .     ..+.+||..+..-...  .      .. +     ..
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v-~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  182 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  182 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             cCccCcccccccccccccccceeeecCCce-eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence            998877654332  2223345677778874 444442 2     3578898876532110  0      00 0     01


Q ss_pred             ceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--c----CCC--CEEEEEE-cCCCCEEEEEeCC--------C
Q psy2110         322 LSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--A----STT--AIKSIEF-ARRGNCLLVNTGD--------R  384 (622)
Q Consensus       322 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----~~~--~i~~~~~-s~~~~~l~~~~~d--------~  384 (622)
                      ....+...++|+.++.+...+.+.+++..+........  .    +..  .-.++.+ ..+++.++.++..        .
T Consensus       183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~  262 (387)
T d1k3ia3         183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  262 (387)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccc
Confidence            11123344677888888777888888877665433211  0    100  1112222 3456666666532        1


Q ss_pred             cEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeCCC----------CeEEEEECCCCeeEEEE
Q psy2110         385 LIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSARQ----------HALYIWEKSVGNLVKIL  454 (622)
Q Consensus       385 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~d----------~~i~iwd~~~~~~~~~~  454 (622)
                      ...+.++.....     ..................+.+..+||+.++.|+...          ..+.+||..+.+-...-
T Consensus       263 ~~~~~~~~~~~~-----~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         263 NAHIITLGEPGT-----SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             CEEEEECCSTTS-----CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             eeeccccccccc-----CCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence            233333321000     000111111111111223456778999999887521          14788998776532211


Q ss_pred             ecCCCCce-eEEEECCCCCEEEEEe
Q psy2110         455 HGTKGELL-LDVVWHPVRPIIASIS  478 (622)
Q Consensus       455 ~~~~~~~v-~~v~~sp~~~~l~s~~  478 (622)
                      .......- ......+||++++.++
T Consensus       338 ~~~~~R~~Hs~a~l~~dG~v~v~GG  362 (387)
T d1k3ia3         338 PNSIVRVYHSISLLLPDGRVFNGGG  362 (387)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCCCcccceEEEEECCCCEEEEEeC
Confidence            11111101 1234678999988887

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.96  E-value=0.012  Score=58.56  Aligned_cols=314  Identities=15%  Similarity=0.126  Sum_probs=168.2

Q ss_pred             CCCEEEEecCCCCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccce-eEEEEcCCCCEEEEeeCCCcEEEEec
Q psy2110          92 DGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLA-VTCAFNKRGTLLAVGCNDGRIVLWDF  170 (622)
Q Consensus        92 ~~~~l~~~~~~~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v-~~~~~s~d~~~l~s~~~dg~i~vw~~  170 (622)
                      +|. |.+++.+ +.|.-+|.++|+.+..+........       ....+...+ ..+.+.  ...++.++.|+.+.-.|.
T Consensus        77 ~g~-vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~-------~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda  145 (573)
T d1kb0a2          77 DGI-MYVSASW-SVVHAIDTRTGNRIWTYDPQIDRST-------GFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDA  145 (573)
T ss_dssp             TTE-EEEECGG-GCEEEEETTTTEEEEEECCCCCGGG-------GGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEET
T ss_pred             CCE-EEEECCC-CeEEEEeCCCCCeEEEeCCCCCccc-------ccccccccccccceEE--CCcEEEEecccceeeecc
Confidence            444 4444444 7899999999999988753221110       000000000 122222  335667778888888888


Q ss_pred             CCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC------CCeEEEEEcCCCceEEEeccCC--------
Q psy2110         171 LTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN------DGRIVLWDFLTRGIAKIISAHM--------  236 (622)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~--------  236 (622)
                      .+|+.+-................. .   +.+   +..+++++.      .|.|+.+|..+|+.+..+....        
T Consensus       146 ~tG~~~W~~~~~~~~~~~~~~~~~-p---~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  218 (573)
T d1kb0a2         146 ATGKEVWHQNTFEGQKGSLTITGA-P---RVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFE  218 (573)
T ss_dssp             TTCCEEEEEETTTTCCSSCBCCSC-C---EEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred             ccccceecccCccCCcceEEeecc-e---EEE---eccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCC
Confidence            888776544322111100000000 0   011   234444432      4789999999999887753211        


Q ss_pred             -----------------------cCe-eEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCcEEEE
Q psy2110         237 -----------------------HPV-CSISWSRNGYKIISAST-------------------DNNVCIWDVLTGECEQK  273 (622)
Q Consensus       237 -----------------------~~v-~~~~~s~~~~~l~s~~~-------------------d~~i~iwd~~~~~~~~~  273 (622)
                                             ..+ ...++.++...++....                   ...|.-.|+++++....
T Consensus       219 ~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~  298 (573)
T d1kb0a2         219 DESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH  298 (573)
T ss_dssp             SHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred             cccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeec
Confidence                                   111 13455555555543321                   12477788888988776


Q ss_pred             EeC-C---------CCeEEEEEeCCC--CeEEEEeeCCCcEEEEEecCCceeecccCCC---------------------
Q psy2110         274 YRF-P---------SPILKVQFHPRN--DHMFLVCPMRHAAVLVDTDGDHQIVPIDEDS---------------------  320 (622)
Q Consensus       274 ~~~-~---------~~v~~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------------------  320 (622)
                      ++. .         .+........++  ..+++.+..++.++++|..+++.+.......                     
T Consensus       299 ~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (573)
T d1kb0a2         299 YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARD  378 (573)
T ss_dssp             EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGC
T ss_pred             ccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccc
Confidence            652 1         122222222233  3456777888999999988776553322100                     


Q ss_pred             --------------CceEEEEEeeCCCEEEEEecC-------------------------------------------Ce
Q psy2110         321 --------------DLSIVASFDRRGQHVVTGNSK-------------------------------------------GK  343 (622)
Q Consensus       321 --------------~~~~~~~~~~~~~~l~~~~~d-------------------------------------------g~  343 (622)
                                    ..-...+++|+...+++...+                                           |.
T Consensus       379 ~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~  458 (573)
T d1kb0a2         379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR  458 (573)
T ss_dssp             TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred             cccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCccc
Confidence                          000124567766665543221                                           35


Q ss_pred             EEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110         344 VLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       344 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (622)
                      +.-||+.+++.+-+.+..... .+=..+-.+.++++++.|+.++.+|..         ..+.+-.+....... -.-+.|
T Consensus       459 l~AiD~~tGk~~W~~~~~~p~-~gg~lstagglVF~G~~dg~l~A~Da~---------TGe~LW~~~~~~~~~-~~P~ty  527 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVSPW-NGGTLTTAGNVVFQGTADGRLVAYHAA---------TGEKLWEAPTGTGVV-AAPSTY  527 (573)
T ss_dssp             EEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECTTSEEEEEETT---------TCCEEEEEECSSCCC-SCCEEE
T ss_pred             EEEeCCCCCceEeeecCCCCC-CCceEEEcCCEEEEECCCCeEEEEECC---------CCcEeEEEECCCCcc-ccCEEE
Confidence            778888888888776643211 111223356778888999999999998         445555444322111 012456


Q ss_pred             cCCCC-eEEEee
Q psy2110         424 SGDGE-YVCAGS  434 (622)
Q Consensus       424 spdg~-~l~~~~  434 (622)
                      ..||+ ||+..+
T Consensus       528 ~~~GkQYv~v~~  539 (573)
T d1kb0a2         528 MVDGRQYVSVAV  539 (573)
T ss_dssp             EETTEEEEEEEE
T ss_pred             EECCEEEEEEEe
Confidence            66886 554443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.70  E-value=0.0084  Score=59.89  Aligned_cols=205  Identities=13%  Similarity=0.176  Sum_probs=116.5

Q ss_pred             ceeEEEEcCCCCEEEEecCC---------------CCeEEEEEcCCCceEEEEeccCcceeEEEEeecCccccccceeEE
Q psy2110          83 MWKKCCFSGDGEYVCAGSAR---------------QHALYIWEKSVGNLVKILHGTKGELLLDVVEFDGALDCISLAVTC  147 (622)
Q Consensus        83 ~~~~~~~sp~~~~l~~~~~~---------------~~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~  147 (622)
                      .+..+++.+....+..+..+               ...|.-.|+.+|+.+..++.....+.        ...+...+..+
T Consensus       242 ~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~W--------d~d~~~~~~l~  313 (596)
T d1w6sa_         242 NWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW--------DYAGVNVMMLS  313 (596)
T ss_dssp             CCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS--------CCCCCCCCEEE
T ss_pred             cccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecccc--------CCccccceeee
Confidence            34456777777766654321               24588889999999988765333221        01111111122


Q ss_pred             EE-cCCC---CEEEEeeCCCcEEEEecCCcccccccccccCCC-----------------cccccccc-----------c
Q psy2110         148 AF-NKRG---TLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPE-----------------FDGALDCI-----------S  195 (622)
Q Consensus       148 ~~-s~d~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-----------~  195 (622)
                      .. ..+|   +.++.+..+|.+.++|..+|+.+..........                 ........           .
T Consensus       314 d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~  393 (596)
T d1w6sa_         314 EQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYH  393 (596)
T ss_dssp             EEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSS
T ss_pred             eccccccccccceeccccccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEeccccccc
Confidence            21 2344   367888899999999999988764322111000                 00000000           0


Q ss_pred             ceEEEEECCCCCEEEEEeC---------------------------------------CCeEEEEEcCCCceEEEeccCC
Q psy2110         196 LAVTCAFNKRGTLLAVGCN---------------------------------------DGRIVLWDFLTRGIAKIISAHM  236 (622)
Q Consensus       196 ~v~~~~~s~~g~~l~~~~~---------------------------------------dg~i~iwd~~~~~~~~~~~~~~  236 (622)
                      .-...+++|+..+++....                                       .|.|.-||+.+++.+...... 
T Consensus       394 nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-  472 (596)
T d1w6sa_         394 NQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-  472 (596)
T ss_dssp             CSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-
T ss_pred             ccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCC-
Confidence            0012355555555443321                                       156788888888877655422 


Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeE--EEEEeCCCCeEEEEe
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPIL--KVQFHPRNDHMFLVC  296 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~  296 (622)
                      .+..+-..+-.|.+++.|+.||.++.+|.++|+.+-.++....+.  -+.|..+|+.++++.
T Consensus       473 ~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~  534 (596)
T d1w6sa_         473 FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY  534 (596)
T ss_dssp             SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence            222222223356788889999999999999999999998554332  245556777655543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.63  E-value=0.03  Score=53.40  Aligned_cols=241  Identities=12%  Similarity=0.074  Sum_probs=126.6

Q ss_pred             EEEEcCCCCEEEEec----CCCCeEEEEEcCCCceEEE-EeccCcceeEEEEeecCccccccceeEEEEcCCCCEEEEee
Q psy2110          86 KCCFSGDGEYVCAGS----ARQHALYIWEKSVGNLVKI-LHGTKGELLLDVVEFDGALDCISLAVTCAFNKRGTLLAVGC  160 (622)
Q Consensus        86 ~~~~sp~~~~l~~~~----~~~~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~  160 (622)
                      ..++|||++++|.+-    .+...|++.|+.+|+.+.. +..-.  .                 ..++|++|++.|+...
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~--~-----------------~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK--F-----------------SCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC--S-----------------CCEEECTTSSEEEEEE
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccccc--c-----------------cceEEcCCCCEEEEEE
Confidence            568899999998643    3335799999999987642 22111  0                 2678999999776543


Q ss_pred             CC----------------CcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeC---CCe--EE
Q psy2110         161 ND----------------GRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCN---DGR--IV  219 (622)
Q Consensus       161 ~d----------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~--i~  219 (622)
                      .+                ..|..|.+.+......+-......       ...+..+..++++++++....   ...  +.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~-------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE-------PKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC-------TTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             eccccCcccccccccCCcceEEEEECCCCccccccccccccC-------CceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence            22                247777776653322221111110       123567788999998865432   233  34


Q ss_pred             EEEcCCCc--------eEEEeccCCcCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCcE---EEEEe-CCCCeEEEE
Q psy2110         220 LWDFLTRG--------IAKIISAHMHPVCSISWSRNGYKIISAST---DNNVCIWDVLTGEC---EQKYR-FPSPILKVQ  284 (622)
Q Consensus       220 iwd~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~~~~---~~~~~-~~~~v~~~~  284 (622)
                      +.++....        ....+........-+.. .++.+++....   ++.|...++.....   ...+. +...+..-.
T Consensus       263 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         263 YCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             EEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred             EeeCCCcccccccccceeEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence            44543321        11222222222332222 22333333322   35566666664421   22333 233454444


Q ss_pred             EeCCCCeEEEEeeCCC--cEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEec----CCeEEEEeCCCcc
Q psy2110         285 FHPRNDHMFLVCPMRH--AAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNS----KGKVLVLSCPALE  353 (622)
Q Consensus       285 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  353 (622)
                      +...+.++++....++  .+++++..++............+..+...++...+...-.    -.++.-+|+.+++
T Consensus       342 ~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            4444555666655555  4677888776554444444444444444444444433322    2578888887765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.059  Score=53.46  Aligned_cols=54  Identities=11%  Similarity=0.243  Sum_probs=38.3

Q ss_pred             EcCCCCeEEEeeCCCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCC-EEEEE
Q psy2110         423 FSGDGEYVCAGSARQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRP-IIASI  477 (622)
Q Consensus       423 ~spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~s~  477 (622)
                      ++..|.+|++|+. |+.++.+|.++|+.+-.++-.....-.-+.|..+|+ +|+..
T Consensus       493 lstagglVF~Gt~-dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         493 LATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             eEEcCCeEEEeCC-CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            3446778888876 999999999999999888754432122366777885 55543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.47  E-value=0.065  Score=53.17  Aligned_cols=325  Identities=11%  Similarity=0.079  Sum_probs=159.4

Q ss_pred             CCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcCCCceEEEe
Q psy2110         153 GTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKII  232 (622)
Q Consensus       153 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~~~~~~~~~  232 (622)
                      +..|++++.++.|.-.|..+|+.+-.+...............  -..+++.  +..++.++.++.+...|..+++.+...
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~--~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~  143 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVV--NRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSC--CCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccc--cCCceEe--CCceEEecCCCeEEEecccccceeeee
Confidence            346667777888888888888877665432211111110000  0112222  346778888999999999999887543


Q ss_pred             cc--CCc--Ce--eEEEEcC--CCCEEEEEe-------CCCcEEEEECCCCcEEEEEeC-CCC-----------------
Q psy2110         233 SA--HMH--PV--CSISWSR--NGYKIISAS-------TDNNVCIWDVLTGECEQKYRF-PSP-----------------  279 (622)
Q Consensus       233 ~~--~~~--~v--~~~~~s~--~~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~~-~~~-----------------  279 (622)
                      ..  +..  ..  ..+.+.+  .+..++..+       ..+.|.-+|.++|+.+-.+.. +..                 
T Consensus       144 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~  223 (582)
T d1flga_         144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred             cccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccc
Confidence            31  110  00  0011111  133333332       245789999999998876652 110                 


Q ss_pred             -----------------------e-EEEEEeCCCCeEEEEeeC-----------------------CCcEEEEEecCCce
Q psy2110         280 -----------------------I-LKVQFHPRNDHMFLVCPM-----------------------RHAAVLVDTDGDHQ  312 (622)
Q Consensus       280 -----------------------v-~~~~~~~~~~~~~~~~~~-----------------------~~~i~~~d~~~~~~  312 (622)
                                             + ..+++.+....+++..+.                       ...+.-.|.++++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~  303 (582)
T d1flga_         224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             ccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhh
Confidence                                   1 124555555543332211                       12455666666665


Q ss_pred             eecccCCCCc---------eEEEEEe-eCCC---EEEEEecCCeEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEE
Q psy2110         313 IVPIDEDSDL---------SIVASFD-RRGQ---HVVTGNSKGKVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLV  379 (622)
Q Consensus       313 ~~~~~~~~~~---------~~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  379 (622)
                      ...++.....         ...+.+. .+++   .++..+.++.++++|..+++++........................
T Consensus       304 ~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~  383 (582)
T d1flga_         304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             hhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCcccccccccccccccee
Confidence            5443321111         0111111 2332   4666788899999999999988766544333322222221111110


Q ss_pred             EeCCCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEEcCCCCeEEEeeC------------------------
Q psy2110         380 NTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCFSGDGEYVCAGSA------------------------  435 (622)
Q Consensus       380 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------------------------  435 (622)
                        .++........      ...................+...+++|+...+.....                        
T Consensus       384 --~~~~~~~~~~~------~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~  455 (582)
T d1flga_         384 --REGQRPPLPEP------GQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGF  455 (582)
T ss_dssp             --CTTCSCCCCCT------TCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             --ccccccccccc------cccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCc
Confidence              00000000000      0000000011111111122223345554443332211                        


Q ss_pred             --------CCCeEEEEECCCCeeEEEEecCCCCceeEEEECCCCCEEEEEe-CCcEEEeecCCcc
Q psy2110         436 --------RQHALYIWEKSVGNLVKILHGTKGELLLDVVWHPVRPIIASIS-SGVVSLWAQNQVE  491 (622)
Q Consensus       436 --------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~s~~-dg~v~iw~~~~~~  491 (622)
                              ..|.|.-+|+.+|+.+-....+..  +..-..+..+.+++.++ ||.++-+|..+.+
T Consensus       456 ~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p--~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         456 RIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEESCSSCSEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccCCCCeEEEEcCCCCcEEeecCCCCC--CccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence                    135788889999988877665432  33222344667777788 9999999997543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.29  E-value=0.08  Score=50.25  Aligned_cols=235  Identities=9%  Similarity=-0.031  Sum_probs=128.4

Q ss_pred             eEEEEcCCCCEEEEe-eC----CCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----
Q psy2110         145 VTCAFNKRGTLLAVG-CN----DGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----  215 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~-~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----  215 (622)
                      ..+++|||++++|.+ +.    ...|+++|+.+++.+...-...            ....++|.+|++.|+....+    
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~------------~~~~~~W~~D~~~~~Y~~~~~~~~  195 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV------------KFSCMAWTHDGKGMFYNAYPQQDG  195 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE------------CSCCEEECTTSSEEEEEECCCCSS
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc------------cccceEEcCCCCEEEEEEeccccC
Confidence            366789999988843 22    3469999999987653211110            11357899999988765432    


Q ss_pred             ------------CeEEEEEcCCCce--EEEeccC--CcCeeEEEEcCCCCEEEEEeC---CCc--EEEEECCCCc-----
Q psy2110         216 ------------GRIVLWDFLTRGI--AKIISAH--MHPVCSISWSRNGYKIISAST---DNN--VCIWDVLTGE-----  269 (622)
Q Consensus       216 ------------g~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~---d~~--i~iwd~~~~~-----  269 (622)
                                  ..|..+.+.+...  ...+...  ...+..+..+.++++++....   +..  +.+.++....     
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~  275 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence                        2577788776532  2233332  234667788999998765432   233  4444543221     


Q ss_pred             ---EEEEEeCCCCeEEEEEeCCCCeEEEEeeC---CCcEEEEEecCCce---eecccCCCCceEEEEEeeCCCEEEEE-e
Q psy2110         270 ---CEQKYRFPSPILKVQFHPRNDHMFLVCPM---RHAAVLVDTDGDHQ---IVPIDEDSDLSIVASFDRRGQHVVTG-N  339 (622)
Q Consensus       270 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~  339 (622)
                         ....+...........+ .+..+++....   ++.+...++.....   ...+..+...+..-.+...+.+|+.. .
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~  354 (430)
T d1qfma1         276 ILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (430)
T ss_dssp             SCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ccceeEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE
Confidence               12222222222222222 23334443332   34566666654321   11222334444444455555566554 3


Q ss_pred             cCC--eEEEEeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecc
Q psy2110         340 SKG--KVLVLSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG----DRLIRVYNHQ  392 (622)
Q Consensus       340 ~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d~~i~i~d~~  392 (622)
                      .++  .|++++..+++....+....+.+..+...++...+...-.    -.+++.||+.
T Consensus       355 ~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~  413 (430)
T d1qfma1         355 HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT  413 (430)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred             cCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECC
Confidence            454  5888999888776665555566666655566554443322    3667788876

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.64  E-value=0.23  Score=45.00  Aligned_cols=164  Identities=10%  Similarity=0.026  Sum_probs=96.6

Q ss_pred             EEEEcCCCCEEEEeeC------------CCcEEEEecCCccccc-ccccccCCCcccccccccceEEEEECCCCC-EEEE
Q psy2110         146 TCAFNKRGTLLAVGCN------------DGRIVLWDFLTRGIAK-IISAHMHPEFDGALDCISLAVTCAFNKRGT-LLAV  211 (622)
Q Consensus       146 ~~~~s~d~~~l~s~~~------------dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~  211 (622)
                      .++..|+|..+++++.            .|.|.++|+.+..... .+...........+.++  -..+.-.++|+ +|++
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph--Gi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH--GISTFIDDDNTVYLLV  116 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE--EEEEEECTTCCEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc--ceeEEEcCCCcEEEEE
Confidence            6777888876666542            4889999987653222 11111110000011111  11233356666 3444


Q ss_pred             E---eCCCeEEEEEcCCCce-E---EEec-cCCcCeeEEEEcCCCCEEEEEeC---------------CCcEEEEECCCC
Q psy2110         212 G---CNDGRIVLWDFLTRGI-A---KIIS-AHMHPVCSISWSRNGYKIISAST---------------DNNVCIWDVLTG  268 (622)
Q Consensus       212 ~---~~dg~i~iwd~~~~~~-~---~~~~-~~~~~v~~~~~s~~~~~l~s~~~---------------d~~i~iwd~~~~  268 (622)
                      .   ....+|.+|++..... +   .++. ......+.+++..++..++|-..               -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            3   2456788998864432 2   2222 12345788999889987777311               123445555555


Q ss_pred             cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCc
Q psy2110         269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDH  311 (622)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  311 (622)
                      +.......-...+.++++|+++.++++....+.|+.|++....
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            5544444446688999999999999999999999999997654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.14  E-value=0.44  Score=42.93  Aligned_cols=203  Identities=13%  Similarity=0.203  Sum_probs=114.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCeEEEEEeC----CCC--eEEEEeeCC---CcEEEEEecCC-ceeec
Q psy2110         246 RNGYKIISASTDNNVCIWDVLTGECEQKYRFPSPILKVQFHP----RND--HMFLVCPMR---HAAVLVDTDGD-HQIVP  315 (622)
Q Consensus       246 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~--~~~~~~~~~---~~i~~~d~~~~-~~~~~  315 (622)
                      |+..+++.....+-|.+||+. |+.++.+. .+.+..+..-.    .+.  .+++++..+   ..+.+|.+... ..+..
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            345677777777779999985 77776654 34555554432    222  233333222   35777877532 22222


Q ss_pred             ccCC-------CCceEEEEE--eeC-CC-EEEEEecCCeEEEEeC---CCc----cEEEEEecCCCCEEEEEEcCCCCEE
Q psy2110         316 IDED-------SDLSIVASF--DRR-GQ-HVVTGNSKGKVLVLSC---PAL----ELKASFKASTTAIKSIEFARRGNCL  377 (622)
Q Consensus       316 ~~~~-------~~~~~~~~~--~~~-~~-~l~~~~~dg~i~i~d~---~~~----~~~~~~~~~~~~i~~~~~s~~~~~l  377 (622)
                      +...       ...++.+|+  ++. |. ++++...+|.+..|.+   .++    ++++.+.. ...+.++.+......|
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSL  194 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcE
Confidence            2211       123455555  554 44 4566777888888765   333    34455554 3578899999999999


Q ss_pred             EEEeCCCcEEEEecccccccCCCCCCCcceeeec--cccceeeeeEEEcCCCC-eEEEeeCCCCeEEEEECCCC-eeEEE
Q psy2110         378 LVNTGDRLIRVYNHQEVLNAGKDGDPEPIQKLQD--LVNKTMWKKCCFSGDGE-YVCAGSARQHALYIWEKSVG-NLVKI  453 (622)
Q Consensus       378 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~-~l~~~~~~d~~i~iwd~~~~-~~~~~  453 (622)
                      .++-.+..|+.++.....    ......+....+  ......-.++--..+++ ||++++..+++..|||..+. +.+..
T Consensus       195 yisEE~~Giw~~~a~~~~----~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDG----GSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             EEEETTTEEEEEESSTTS----CSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             EEecCccceEEEEeccCC----CccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            999888767666654200    001111111111  11111112333344544 88777777889999998763 55555


Q ss_pred             Ee
Q psy2110         454 LH  455 (622)
Q Consensus       454 ~~  455 (622)
                      +.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.00  E-value=0.52  Score=42.45  Aligned_cols=200  Identities=11%  Similarity=0.148  Sum_probs=112.8

Q ss_pred             CCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCC----CeEEEEEcCC-
Q psy2110         151 KRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCND----GRIVLWDFLT-  225 (622)
Q Consensus       151 ~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iwd~~~-  225 (622)
                      |+..+++.....+-|.+||+. |+.++.+...       .+..+.....+.+.....-+++++..    ..|.+|.+.. 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~G-------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~  109 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTG-------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK  109 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSS-------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccC-------CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence            345577777777779999985 6666655322       11111222333343333345555532    3577887753 


Q ss_pred             CceEEEeccC-------CcCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CC----cEEEEEeCCCCeEEEEEeC
Q psy2110         226 RGIAKIISAH-------MHPVCSISW--SRN-GY-KIISASTDNNVCIWDVL---TG----ECEQKYRFPSPILKVQFHP  287 (622)
Q Consensus       226 ~~~~~~~~~~-------~~~v~~~~~--s~~-~~-~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~~~~~~~  287 (622)
                      ...+..+...       ...+..+|+  ++. |. +++....+|.+..|.+.   .+    +.++.+.....+..+.+.+
T Consensus       110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence            3333333321       124677777  553 54 45566678888888663   33    3556677888999999999


Q ss_pred             CCCeEEEEeeCCCcEEEEEecCC-----ceeeccc--CCCCceEEEEEe--eCCC-EE-EEEecCCeEEEEeCCC-ccEE
Q psy2110         288 RNDHMFLVCPMRHAAVLVDTDGD-----HQIVPID--EDSDLSIVASFD--RRGQ-HV-VTGNSKGKVLVLSCPA-LELK  355 (622)
Q Consensus       288 ~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~--~~~~~~~~~~~~--~~~~-~l-~~~~~dg~i~i~d~~~-~~~~  355 (622)
                      ....++ .+-.+..++.++....     ..+....  ....-+-.++.-  .++. +| ++.-.+++..+||... .+.+
T Consensus       190 e~~~Ly-isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~  268 (353)
T d1h6la_         190 EYGSLY-IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYV  268 (353)
T ss_dssp             TTTEEE-EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             CCCcEE-EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcccc
Confidence            887654 4555666666665421     1121111  123345555543  3333 44 4444567899999875 3555


Q ss_pred             EEEe
Q psy2110         356 ASFK  359 (622)
Q Consensus       356 ~~~~  359 (622)
                      ..|.
T Consensus       269 g~F~  272 (353)
T d1h6la_         269 ADFQ  272 (353)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            5554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.58  Score=42.65  Aligned_cols=183  Identities=10%  Similarity=0.073  Sum_probs=100.6

Q ss_pred             eEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy2110         145 VTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVGCNDGRIVLWDFL  224 (622)
Q Consensus       145 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iwd~~  224 (622)
                      .-++.++...+++.|+.++ ++|-.+..-  ...+..............+..|..++|+.+  .|++. .++.+..++..
T Consensus        40 ~LLAVsn~~GLl~aa~~~~-l~V~~t~~l--~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          40 QNLDISNSKSLFVAASGSK-AVVGELQLL--RDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHH--HHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ceEEEeCCCCEEEEECCCE-EEEEEHHHH--HHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            4678888777888888774 667664331  111110000000000111235788999754  45554 45678888877


Q ss_pred             CCceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE------eCCCCeEEEEEeCCCCeEEEEeeC
Q psy2110         225 TRGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKY------RFPSPILKVQFHPRNDHMFLVCPM  298 (622)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~  298 (622)
                      +-........-..++.++.++|.  .++....++.+.++++..++.....      ...+.+.+++|++.+..+++ +..
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~-~~g  190 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA-WRN  190 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE-EET
T ss_pred             ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE-eCC
Confidence            65544444444567888888775  4666667899999999888654332      24466778888877665433 322


Q ss_pred             CCcEEE-EEecCCceeecccCCCCceEEEEEeeCCCEEEE
Q psy2110         299 RHAAVL-VDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVT  337 (622)
Q Consensus       299 ~~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  337 (622)
                       +...+ -++.....+.........+.++.|-.+..++++
T Consensus       191 -~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         191 -GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             -TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             -CceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence             21111 122222222111223345667777655554443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.32  Score=42.66  Aligned_cols=105  Identities=11%  Similarity=0.003  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCcEEEEEeCCCC--eEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCceee
Q psy2110         247 NGYKIISASTD-----NNVCIWDVLTGECEQKYRFPSP--ILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDHQIV  314 (622)
Q Consensus       247 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~  314 (622)
                      ++..++.|+.+     ..+..||..+.+....-.....  ..+....  +..+++.++.+     .....+|..+.....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeec
Confidence            34455555443     3578888877654433222111  1122222  23456665443     245667766554332


Q ss_pred             cccCCCCceEEEEEeeCCCEEEEEecCC-----eEEEEeCCCcc
Q psy2110         315 PIDEDSDLSIVASFDRRGQHVVTGNSKG-----KVLVLSCPALE  353 (622)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  353 (622)
                      ............+...+++.++.|+.++     .+.+||+.+.+
T Consensus       226 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         226 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            2111111111122234677888876543     37788887654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.52  Score=41.20  Aligned_cols=185  Identities=11%  Similarity=0.034  Sum_probs=81.5

Q ss_pred             CCCEEEEEeC---------CCeEEEEEcCCCceEEEe--ccCCcCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q psy2110         205 RGTLLAVGCN---------DGRIVLWDFLTRGIAKII--SAHMHPVCSISWSRNGYKIISASTDN-----NVCIWDVLTG  268 (622)
Q Consensus       205 ~g~~l~~~~~---------dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~-----~i~iwd~~~~  268 (622)
                      ++++++.|+.         -..+.+||..+.+....-  ......-.+..+  +++.++.++.++     ....++..+.
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccC
Confidence            4556666542         235678887765543211  111111112222  555555554333     3556777666


Q ss_pred             cEEEEEeCCCCeEEEEEeCCCCeEEEEeeCC-----CcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC--
Q psy2110         269 ECEQKYRFPSPILKVQFHPRNDHMFLVCPMR-----HAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK--  341 (622)
Q Consensus       269 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--  341 (622)
                      .......................+++.++.+     ..+..||.........................++.++.|+.+  
T Consensus       128 ~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~  207 (288)
T d1zgka1         128 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ  207 (288)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             ccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCcccc
Confidence            5433222221111111111123455555443     346777776543322211111111112222345566665544  


Q ss_pred             ---CeEEEEeCCCccEEEEEecCCCCE-EEEEEcCCCCEEEEEeCCC-----cEEEEecc
Q psy2110         342 ---GKVLVLSCPALELKASFKASTTAI-KSIEFARRGNCLLVNTGDR-----LIRVYNHQ  392 (622)
Q Consensus       342 ---g~i~i~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~d~-----~i~i~d~~  392 (622)
                         .....+|..+.+....-....... .+++. .+++.++.|+.++     .|.+||+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         208 DQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             ccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECC
Confidence               346777877655433212111111 12222 2567777765433     36777776

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.03  E-value=0.73  Score=43.47  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=38.9

Q ss_pred             CceEEEEEeeCCCEEEEEecCCeEEEEeCCCccEEEEEe--------cCCCCEEEEEEcCC
Q psy2110         321 DLSIVASFDRRGQHVVTGNSKGKVLVLSCPALELKASFK--------ASTTAIKSIEFARR  373 (622)
Q Consensus       321 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~s~~  373 (622)
                      ....+++|.|+|+++++--..|.|++++..+++......        .-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            356689999999988887567999999987776443222        11356789999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.82  E-value=1.3  Score=39.72  Aligned_cols=150  Identities=12%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             eEEEEcCCCCEEEEEeC------------CCcEEEEECCCCcEE-EEEe--CC------CCeEEEEE--eCCCCeEEEEe
Q psy2110         240 CSISWSRNGYKIISAST------------DNNVCIWDVLTGECE-QKYR--FP------SPILKVQF--HPRNDHMFLVC  296 (622)
Q Consensus       240 ~~~~~s~~~~~l~s~~~------------d~~i~iwd~~~~~~~-~~~~--~~------~~v~~~~~--~~~~~~~~~~~  296 (622)
                      -.+...|+|..+++++.            .|.|.++|+.+.+.. ..+.  ..      -....+.+  .+++...+++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            45666677765555432            388999998765422 2221  11      12344443  44565555554


Q ss_pred             e---CCCcEEEEEecCCce-e---eccc-CCCCceEEEEEeeCCCEEEEEe-----------------cCCeEEEEeCCC
Q psy2110         297 P---MRHAAVLVDTDGDHQ-I---VPID-EDSDLSIVASFDRRGQHVVTGN-----------------SKGKVLVLSCPA  351 (622)
Q Consensus       297 ~---~~~~i~~~d~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~  351 (622)
                      .   ....|-++++..... +   ..+. ........++...+|.++++-.                 ..+.+.-|+.  
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--  195 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  195 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--
Confidence            2   455688888754321 1   1111 1223456788888888888731                 1223444443  


Q ss_pred             ccEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q psy2110         352 LELKASFKASTTAIKSIEFARRGNCLLVNT-GDRLIRVYNHQ  392 (622)
Q Consensus       352 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~i~d~~  392 (622)
                      ++...... .-...+.|+++|++++|+++. ..+.|++|++.
T Consensus       196 ~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         196 NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             SCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            33322222 235578999999999887774 57889999987

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=1.3  Score=40.22  Aligned_cols=174  Identities=7%  Similarity=0.037  Sum_probs=98.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEEcCC-----------CceEEEeccCCcCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q psy2110         197 AVTCAFNKRGTLLAVGCNDGRIVLWDFLT-----------RGIAKIISAHMHPVCSISWSRNGYKIISASTDNNVCIWDV  265 (622)
Q Consensus       197 v~~~~~s~~g~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~  265 (622)
                      ..-+++++...++++|+.++ +.|.....           .......  .-..|..++|+.+  .|+... ++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~~-~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVST-RNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEEE-SSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEEe-CCCEEEEEe
Confidence            45678888888888888764 66766421           1111111  1236888999754  455543 466888887


Q ss_pred             CCCcEEEEEe-CCCCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceeeccc-----CCCCceEEEEEeeCCCEEEEEe
Q psy2110         266 LTGECEQKYR-FPSPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIVPID-----EDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       266 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      .+-....... ...++..+.++|.   .++....++.+.++++..........     .-.....+++|++.|+.++++.
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            7644433333 5677888888875   35666778888888887664322111     1124466677777777776653


Q ss_pred             cCCeEEEE-eCCCccEEEEEecCCCCEEEEEEcCCCCEEEEE
Q psy2110         340 SKGKVLVL-SCPALELKASFKASTTAIKSIEFARRGNCLLVN  380 (622)
Q Consensus       340 ~dg~i~i~-d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  380 (622)
                      .++ ..+. ++.....+.........+.+|.|-.+..++++-
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            322 1110 111000000000123467899998776666554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.03  E-value=3.2  Score=33.48  Aligned_cols=230  Identities=13%  Similarity=0.119  Sum_probs=116.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCceEEEeccCCcCeeEEEEc-CCCCEEEEEe------CCCcEEEEECCCCcEEEEEeCC
Q psy2110         205 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPVCSISWS-RNGYKIISAS------TDNNVCIWDVLTGECEQKYRFP  277 (622)
Q Consensus       205 ~g~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~  277 (622)
                      +.++++++...|.+.++-+..++.++.-+   .+|.....- +.=.++..+-      .-..|.+-++...-..+.+..+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            34578888889999999988777654332   333322111 1111222221      1124555555533344455555


Q ss_pred             CCeEEEEEeCCCCeEEEEeeCCCcEEEEEecCCceee--cccC-------CCCceEEEEE-eeCCCEEEEEec-CCeEEE
Q psy2110         278 SPILKVQFHPRNDHMFLVCPMRHAAVLVDTDGDHQIV--PIDE-------DSDLSIVASF-DRRGQHVVTGNS-KGKVLV  346 (622)
Q Consensus       278 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~-------~~~~~~~~~~-~~~~~~l~~~~~-dg~i~i  346 (622)
                      .++.-+...-+++.++++++......+|-+..+....  .+..       ....+..+.+ .++.+-++++.- .|.+++
T Consensus       102 k~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         102 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             ceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            6677667777788899999999999999988764322  2221       1122222222 122222333333 444555


Q ss_pred             EeCCCccEEEEEecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecccccccCCCCCCCcceeeeccccceeeeeEEE
Q psy2110         347 LSCPALELKASFKASTTAIKSIEFARRGNCLLVNTG---DRLIRVYNHQEVLNAGKDGDPEPIQKLQDLVNKTMWKKCCF  423 (622)
Q Consensus       347 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (622)
                      ++..           .+.++.....+..+. ++.-.   .....-+|++...-....   -+-+.+.. .....+.-+-+
T Consensus       182 ~tpk-----------eGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve---~P~kd~~s-y~p~~I~~~~Y  245 (313)
T d2hu7a1         182 FDSG-----------EGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLE---LPSKDFSS-YRPTAITWLGY  245 (313)
T ss_dssp             ECCS-----------SEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECC---CSSCHHHH-HCCSEEEEEEE
T ss_pred             ecCC-----------CCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeee---cCccccee-ecceEEEeeee
Confidence            5444           445555555655543 33321   111223355421000000   00001110 11123333568


Q ss_pred             cCCCCeEEEeeCCCCeEEEEECCCCeeEEEEec
Q psy2110         424 SGDGEYVCAGSARQHALYIWEKSVGNLVKILHG  456 (622)
Q Consensus       424 spdg~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  456 (622)
                      .|++++++.+-. ||.-.+|.  +|+.+..-+|
T Consensus       246 ~Pdd~L~iiakr-dG~s~lF~--nGk~in~p~G  275 (313)
T d2hu7a1         246 LPDGRLAVVARR-EGRSAVFI--DGERVEAPQG  275 (313)
T ss_dssp             CTTSCEEEEEEE-TTEEEEEE--TTEEECCCSS
T ss_pred             CCCCcEEEEEec-CCchheee--cceEecCCCC
Confidence            999999877776 88888886  4665544433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.03  E-value=7.4  Score=36.13  Aligned_cols=103  Identities=9%  Similarity=0.152  Sum_probs=61.5

Q ss_pred             cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------CCCeEEEEEeCC---CCeEEEEeeC------
Q psy2110         237 HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRF---------PSPILKVQFHPR---NDHMFLVCPM------  298 (622)
Q Consensus       237 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~~~~~~~~------  298 (622)
                      ...++|+|.|||+.|++--..|.|++++..+++.......         ......++++|+   +..++++...      
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4567999999999887775579999999888766544331         245678999985   3344443210      


Q ss_pred             C----C--cEEEEEecCCc-------ee-ecc-cCCCCceEEEEEeeCCCEEEEEe
Q psy2110         299 R----H--AAVLVDTDGDH-------QI-VPI-DEDSDLSIVASFDRRGQHVVTGN  339 (622)
Q Consensus       299 ~----~--~i~~~d~~~~~-------~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~  339 (622)
                      +    .  .+..+......       .+ ... .........+.|.++|.++++.+
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            0    1  12233332221       01 111 12224456899999998777654

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.41  E-value=11  Score=32.94  Aligned_cols=233  Identities=11%  Similarity=0.009  Sum_probs=115.4

Q ss_pred             cCCcEEEeccCCCeEEEEeccccc------ee------------cccCceEEeecCCceEEEeechhhhhcCCCCCCccc
Q psy2110          11 RRGQHVVTGNSKGKVLVLSCPALE------LK------------ASRGNCLLVNTGDRLIRVYNHQEVLNAGKDGDPEPI   72 (622)
Q Consensus        11 pdg~~latg~~dg~v~vwd~~~~~------~~------------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~   72 (622)
                      |+...+++-+.+|.|+--+.....      ..            ......|+.-+..|.+..-...............++
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi   82 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI   82 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccc
Confidence            566677788888888765443210      00            222334444455555544433332222222223344


Q ss_pred             hhhhhhcccccee-EEEEcC--CCCEEEEecCCCCeEEEEEcCCC------ceEEEEec-cCcceeEEEEeecCcccccc
Q psy2110          73 QKLQDLVNKTMWK-KCCFSG--DGEYVCAGSARQHALYIWEKSVG------NLVKILHG-TKGELLLDVVEFDGALDCIS  142 (622)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~sp--~~~~l~~~~~~~~~i~vwd~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  142 (622)
                      ..+..+.....+. .+...+  ...+|+..+.. |.++...+..-      +....+.- ....+               
T Consensus        83 ~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~-G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l---------------  146 (323)
T d1wp5a_          83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRN-GMVKKTELKHYKAQRYSKPLTGINLKNDDQV---------------  146 (323)
T ss_dssp             GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETT-SEEEEEEGGGGCCSCCSSCEECSCCCTTCCE---------------
T ss_pred             eeeecccCCcceEEEeeccccccceeEEEEeeh-hheeeccHHHhhhhhccchhhhccccccccc---------------
Confidence            4444443343443 334332  35677777755 89998886421      11222222 22222               


Q ss_pred             ceeEEEEcCCCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceE-EEEECCCCCEEEEEeCCCeEEEE
Q psy2110         143 LAVTCAFNKRGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAV-TCAFNKRGTLLAVGCNDGRIVLW  221 (622)
Q Consensus       143 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~i~iw  221 (622)
                        ..+....+...++.++..|.+..++...-.....-   ......-.+.....+. .....+++..|+..+..|..+.-
T Consensus       147 --~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~---a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~  221 (323)
T d1wp5a_         147 --VDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR---AAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKM  221 (323)
T ss_dssp             --EEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS---CCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred             --cceeccCCCeEEEEEEecceeeEeecccccccCcc---cccccccccccccccchhhhccccccceeeeeeeheeecc
Confidence              35666666678888899999999987652221110   0000001111112334 44556677788888889998887


Q ss_pred             EcCCCce-------EEEec---cCCcCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q psy2110         222 DFLTRGI-------AKIIS---AHMHPVCSISWSRNGYKIISASTDNNVCIWD  264 (622)
Q Consensus       222 d~~~~~~-------~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iwd  264 (622)
                      .+..-..       +..++   .....+..+....+...|+..+..|.+.-.+
T Consensus       222 ~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~  274 (323)
T d1wp5a_         222 KLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIK  274 (323)
T ss_dssp             EGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEE
T ss_pred             cchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEE
Confidence            6643211       11111   1122344444444444555555556554444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.74  E-value=11  Score=30.21  Aligned_cols=215  Identities=12%  Similarity=0.112  Sum_probs=116.6

Q ss_pred             CCCEEEEeeCCCcEEEEecCCcccccccccccCCCcccccccccceEEEEECCCCCEEEEE------eCCCeEEEEEcCC
Q psy2110         152 RGTLLAVGCNDGRIVLWDFLTRGIAKIISAHMHPEFDGALDCISLAVTCAFNKRGTLLAVG------CNDGRIVLWDFLT  225 (622)
Q Consensus       152 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~------~~dg~i~iwd~~~  225 (622)
                      +.++|+++...|.+.++-+..++....-+.....             ...-.+.-.++...      -.-..|.+-++..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~-------------~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~   91 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINS-------------VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR   91 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSE-------------ECEECTTBSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccC-------------cCCCccCcceEEEEeehhcCcceeeEEEEccCC
Confidence            4457888888899999988877665443322110             00111111122221      1123355555543


Q ss_pred             CceEEEeccCC-cCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC----------CCeEEEEEeCCCCeEEE
Q psy2110         226 RGIAKIISAHM-HPVCSISWSRNGYKIISASTDNNVCIWDVLTGECEQKYRFP----------SPILKVQFHPRNDHMFL  294 (622)
Q Consensus       226 ~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~  294 (622)
                      ......+.... -.|.+++.. +.+..++|+......+|-++.|+.....+.+          .-|..+.+...++.-++
T Consensus        92 ~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF  170 (313)
T d2hu7a1          92 PGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLF  170 (313)
T ss_dssp             TTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred             CCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEE
Confidence            34444444433 456666664 3456677777778889988888776655422          22333433333333333


Q ss_pred             EeeC-CCcEEEEEecCCceeecccCCCCceEEEEEeeCCCEEEEEecC---CeEEEEeCCCccEEEE-Ee------cCCC
Q psy2110         295 VCPM-RHAAVLVDTDGDHQIVPIDEDSDLSIVASFDRRGQHVVTGNSK---GKVLVLSCPALELKAS-FK------ASTT  363 (622)
Q Consensus       295 ~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~------~~~~  363 (622)
                      ++.. .|.+++++...           +.+....+.+..+. +++-+.   ....-+|+++++.-.. +.      -...
T Consensus       171 ~adl~SG~lri~tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~  238 (313)
T d2hu7a1         171 TSNLSSGGLRVFDSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPT  238 (313)
T ss_dssp             EEETTTEEEEEECCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCS
T ss_pred             EEecccCCEEEecCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecce
Confidence            3333 66666665543           34445555555544 333221   1222457776653321 11      1123


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecc
Q psy2110         364 AIKSIEFARRGNCLLVNTGDRLIRVYNHQ  392 (622)
Q Consensus       364 ~i~~~~~s~~~~~l~~~~~d~~i~i~d~~  392 (622)
                      .|+-+-+.|++++++.+-.||.=++|.-.
T Consensus       239 ~I~~~~Y~Pdd~L~iiakrdG~s~lF~nG  267 (313)
T d2hu7a1         239 AITWLGYLPDGRLAVVARREGRSAVFIDG  267 (313)
T ss_dssp             EEEEEEECTTSCEEEEEEETTEEEEEETT
T ss_pred             EEEeeeeCCCCcEEEEEecCCchheeecc
Confidence            46667789999998999999999998754