Psyllid ID: psy2115

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQKTSGPQKWSGGPHVARRPLVGNPWSRVV
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEcccHHHccccccccccEEEccEEEEEccEEEEEccccccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEccccHHHcccccccccEEEcccEEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meintnpkklrghkfnwtnpedirnnetkpnfvemgpyrfhygdkyksqktsgpqkwsggphvarrplvgnpwsrvv
Flexible Loop (DISEMBL)
meintnpkklrghkfnwtnpedirnnetkpnfveMGPYRFHYGDKYKSQKTsgpqkwsggphvarrplvgnpwsrvv
Low Complexity Region (SEG)
MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQKTSGPQKWSGGPHVARRPLVGNPWSRVV
Disordered region (IsUnstruct)
*******************************FVEMGPYRFHYG**********************************
Disordered Region (DISOPRED)
****TNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKY**********W***PHVARRPLVGNPWSRV*
Disordered Region (DISEMBL)
MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDK****************HVARRPLVGNPWSRVV
Disordered Region (DISPRO)
*EINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYK*******************P**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQKTSGPQKWSGGPHVARRPLVGNPWSRVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q27367	457	Protein croquemort OS=Dro	no	N/A	0.441	0.074	0.705	2e-07

>sp|Q27367|CRQ_DROME Protein croquemort OS=Drosophila melanogaster GN=crq PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96

Macrophage receptor for apoptotic cells.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
195434929	491	GK14659 [Drosophila willistoni] gi|19416	0.441	0.069	0.676	5e-06
17944924	491	RE02070p [Drosophila melanogaster]	0.441	0.069	0.705	6e-06
28574812	491	croquemort, isoform A [Drosophila melano	0.441	0.069	0.705	6e-06
25453430	457	RecName: Full=Protein croquemort; AltNam	0.441	0.074	0.705	7e-06
468536	457	D-CD36 [Drosophila melanogaster] gi|4685	0.441	0.074	0.705	7e-06
195470270	491	crq [Drosophila yakuba] gi|194173532|gb|	0.441	0.069	0.705	1e-05
195575553	491	crq [Drosophila simulans] gi|194189651|g	0.441	0.069	0.705	1e-05
27464863	366	CRQ [Drosophila simulans]	0.441	0.092	0.705	1e-05
27464859	366	CRQ [Drosophila simulans]	0.441	0.092	0.705	1e-05
27464865	366	CRQ [Drosophila simulans]	0.441	0.092	0.705	1e-05

>gi|195434929|ref|XP_002065454.1| GK14659 [Drosophila willistoni] gi|194161539|gb|EDW76440.1| GK14659 [Drosophila willistoni]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIR+++ KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRDHDIKPNFVEMGPYVF 96

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17944924|gb|AAL48526.1| RE02070p [Drosophila melanogaster]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574812|ref|NP_787957.1| croquemort, isoform A [Drosophila melanogaster] gi|28574814|ref|NP_787958.1| croquemort, isoform B [Drosophila melanogaster] gi|386768897|ref|NP_001245823.1| croquemort, isoform C [Drosophila melanogaster] gi|442624975|ref|NP_001259824.1| croquemort, isoform D [Drosophila melanogaster] gi|442624977|ref|NP_001259825.1| croquemort, isoform E [Drosophila melanogaster] gi|7296202|gb|AAF51494.1| croquemort, isoform A [Drosophila melanogaster] gi|28381603|gb|AAN10497.2| croquemort, isoform B [Drosophila melanogaster] gi|378548258|gb|AFC17503.1| FI18608p1 [Drosophila melanogaster] gi|383291259|gb|AFH03500.1| croquemort, isoform C [Drosophila melanogaster] gi|440213072|gb|AGB92361.1| croquemort, isoform D [Drosophila melanogaster] gi|440213073|gb|AGB92362.1| croquemort, isoform E [Drosophila melanogaster]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25453430|sp|Q27367.2|CRQ_DROME RecName: Full=Protein croquemort; AltName: Full=d-CD36

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|468536|emb|CAA83454.1| D-CD36 [Drosophila melanogaster] gi|468538|emb|CAA83455.1| D-CD36 [Drosophila melanogaster]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470270|ref|XP_002087431.1| crq [Drosophila yakuba] gi|194173532|gb|EDW87143.1| crq [Drosophila yakuba]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 25/34 (73%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN   KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPNIKPNFVEMGPYTF 96

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195575553|ref|XP_002077642.1| crq [Drosophila simulans] gi|194189651|gb|EDX03227.1| crq [Drosophila simulans]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 25/34 (73%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN   KPNFVEMGPY F
Sbjct: 63 PIYLSFYMFNWTNPEDIRNPNIKPNFVEMGPYTF 96

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464863|gb|AAO16223.1| CRQ [Drosophila simulans]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 33 PIYLSFYMFNWTNPEDIRNPKIKPNFVEMGPYTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464859|gb|AAO16221.1| CRQ [Drosophila simulans]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 33 PIYLSFYMFNWTNPEDIRNPKIKPNFVEMGPYTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464865|gb|AAO16224.1| CRQ [Drosophila simulans]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)

Query: 7  PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRF 40
          P  L  + FNWTNPEDIRN + KPNFVEMGPY F
Sbjct: 33 PIYLSFYMFNWTNPEDIRNPKIKPNFVEMGPYTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0015924	457	crq "croquemort" [Drosophila m	0.532	0.089	0.604	3.8e-08
FB|FBgn0025697	563	santa-maria "scavenger recepto	0.337	0.046	0.615	9.2e-05

FB|FBgn0015924 crq "croquemort" [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 26/43 (60%), Positives = 31/43 (72%)

Query:     7 PKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQ 49
             P  L  + FNWTNPEDIRN + KPNFVEMGPY F   +K+K +
Sbjct:    63 PIYLSFYMFNWTNPEDIRNPDIKPNFVEMGPYTFL--EKHKKE 103

GO:0005044 "scavenger receptor activity" evidence=ISS;NAS;TAS

GO:0006909 "phagocytosis" evidence=IMP;TAS

GO:0006915 "apoptotic process" evidence=NAS;IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006911 "phagocytosis, engulfment" evidence=TAS

GO:0006952 "defense response" evidence=NAS

GO:0006955 "immune response" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP;TAS

GO:0042116 "macrophage activation" evidence=TAS

GO:0050764 "regulation of phagocytosis" evidence=TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0002433 "immune response-regulating cell surface receptor signaling pathway involved in phagocytosis" evidence=IDA

FB|FBgn0025697 santa-maria "scavenger receptor acting in neural tissue and majority of rhodopsin is absent" [Drosophila melanogaster (taxid:7227)]

 Score = 96 (38.9 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query:    15 FNWTNPEDIRNNETKPNFVEMGPYRF 40
             +NWTNPED  N  TKP   ++GPYRF
Sbjct:    75 YNWTNPEDFGNLSTKPILEQVGPYRF 100

GO:0006952 "defense response" evidence=ISS;NAS

GO:0005044 "scavenger receptor activity" evidence=ISS;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016116 "carotenoid metabolic process" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0016063 "rhodopsin biosynthetic process" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
pfam01130	460	pfam01130, CD36, CD36 family	1e-09

>gnl|CDD|216316 pfam01130, CD36, CD36 family

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 15 FNWTNPEDIRNNETKPNFVEMGPYRFH 41
          FN TNPE++ N   KP   E+GPY + 
Sbjct: 58 FNVTNPEEVLNGGAKPIVEEVGPYVYR 84

The CD36 family is thought to be a novel class of scavenger receptors. There is also evidence suggesting a possible role in signal transduction. CD36 is involved in cell adhesion. Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
PF01130	467	CD36: CD36 family; InterPro: IPR002159 CD36 is a t	99.86
KOG3776|consensus	507		99.79

>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues

Probab=99.86  E-value=3e-22  Score=155.09  Aligned_cols=55  Identities=27%  Similarity=0.345  Sum_probs=53.2

Q ss_pred             CccCCCcceEEEEEEeccChhhhhCCCCCcceEEeCCeEEEEeeeeeceEEcCCc
Q psy2115           1 MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQKTSGPQ   55 (77)
Q Consensus         1 ~~~pP~p~~~~~y~FNvTNpeevl~G~~kP~v~EvGPYvY~E~~~K~nvtf~~~~   55 (77)
                      |++||+|++++||+||||||+||++|++||+|+|+|||+|+|+++|.|++|++++
T Consensus        44 W~~~p~p~~~~~y~fNvTNp~ev~~~g~kP~~~EvGPY~y~e~~~k~nv~~~~~~   98 (467)
T PF01130_consen   44 WKKPPVPIYFKFYFFNVTNPEEVLNGGAKPNVQEVGPYVYREYREKVNVTFNDNG   98 (467)
T ss_pred             hhcCCCccEEEEEEEeccCHHHHhCcCCCceEEEeCCEEEEeeeeeeeeEEcCCC
Confidence            8999999999999999999999999668999999999999999999999999997

Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane

>KOG3776|consensus

Probab=99.79  E-value=9.1e-20  Score=145.74  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             CccCCCcceEEEEEEeccChhhhhCCCCCcceEEeCCeEEEEeeeeeceEEcCCcc
Q psy2115           1 MEINTNPKKLRGHKFNWTNPEDIRNNETKPNFVEMGPYRFHYGDKYKSQKTSGPQK   56 (77)
Q Consensus         1 ~~~pP~p~~~~~y~FNvTNpeevl~G~~kP~v~EvGPYvY~E~~~K~nvtf~~~~~   56 (77)
                      |.+||++++++||+|||||||||++|++||+|+|+|||+|+|..+|+|+.|++|++
T Consensus        55 W~~pp~~~~~~~yiFNvTNpde~~~~~~kp~v~EvGPyvy~E~~~K~~~~f~~n~t  110 (507)
T KOG3776|consen   55 WLNPPYPIYLNFYIFNVTNPDEFLSGGAKPNVQEVGPYVYREIEQKVNIDFNENNT  110 (507)
T ss_pred             hhcCCCccEEEEEEEecCCHHHhhCcCCCCceEeeCCeEEEEEecccceeeccCCc
Confidence            89999999999999999999999998789999999999999999999999999977

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00