Psyllid ID: psy2117

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccHHHHHHHHHHccEEccccHHHHccccccccEEEEEEEEEcccHHHHHcccccccEEEEccEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccHHHHcccccccEEEEEEEEEcccHHHHHccccccEEEEcccEEEc
Coil and Loop (DISEMBL)
MTVGALLTLtnievtslpSFFQLILQKElalspwsrsfkiwrsnpvpiyldfyffnwtnpedirnnetkpnfvemgpyrfq
Flexible Loop (DISEMBL)
mtvgalltltnievtslPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNetkpnfvemgpyrfq
Low Complexity Region (SEG)
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Disordered region (IsUnstruct)
***GALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNP*********************
Disordered Region (DISOPRED)
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Disordered Region (DISEMBL)
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Disordered Region (DISPRO)
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVGALLTLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q27367	457	Protein croquemort OS=Dro	no	N/A	0.962	0.170	0.468	4e-15
O18824	509	Scavenger receptor class	no	N/A	0.962	0.153	0.375	1e-07
Q8SQC1	509	Scavenger receptor class	yes	N/A	0.962	0.153	0.375	1e-07
Q8WTV0	552	Scavenger receptor class	yes	N/A	0.987	0.144	0.349	1e-07
Q14108	478	Lysosome membrane protein	no	N/A	0.691	0.117	0.421	3e-07
Q60417	509	Scavenger receptor class	yes	N/A	0.975	0.155	0.370	5e-07
P97943	509	Scavenger receptor class	yes	N/A	0.901	0.143	0.364	7e-07
O35114	478	Lysosome membrane protein	yes	N/A	0.691	0.117	0.403	1e-06
P27615	478	Lysosome membrane protein	no	N/A	0.691	0.117	0.403	1e-06
Q61009	509	Scavenger receptor class	no	N/A	0.851	0.135	0.357	2e-06

>sp|Q27367|CRQ_DROME Protein croquemort OS=Drosophila melanogaster GN=crq PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct: 18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIRN + KPNFVEMGPY F
Sbjct: 78 DIRNPDIKPNFVEMGPYTF 96

Macrophage receptor for apoptotic cells.
Drosophila melanogaster (taxid: 7227)

>sp|O18824|SCRB1_BOVIN Scavenger receptor class B member 1 OS=Bos taurus GN=SCARB1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 3  VGALLTLTNI-EVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G L  +  I  +  +PS  +  + K + + P S SF +W+  PVP YL  YFFN  NPE
Sbjct: 17 IGLLFAVLGIIMIVMVPSIIKQQVLKNVRIDPNSLSFNMWKEIPVPFYLSVYFFNIVNPE 76

Query: 62 DIRNNETKPNFVEMGPYRFQ 81
           I   + KP   E GPY ++
Sbjct: 77 GIIQGQ-KPQVQEHGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester.

Bos taurus (taxid: 9913)

>sp|Q8SQC1|SCRB1_PIG Scavenger receptor class B member 1 OS=Sus scrofa GN=SCARB1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 3  VGALLT-LTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          VG LL  L  + +  +PS  +  + K + + P S SF +W+  PVP YL  YFF+  NP 
Sbjct: 17 VGLLLAALGAVMIVMVPSIIKQQVLKNVRIDPSSLSFNMWKEIPVPFYLSVYFFDVINPN 76

Query: 62 DIRNNETKPNFVEMGPYRFQ 81
          +I   + KP   E GPY ++
Sbjct: 77 EILQGQ-KPQVRERGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester.

Sus scrofa (taxid: 9823)

>sp|Q8WTV0|SCRB1_HUMAN Scavenger receptor class B member 1 OS=Homo sapiens GN=SCARB1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 1  MTVGALLT--LTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
          + V  LL   L  + +  +PS  +  + K + + P S SF +W+  P+P YL  YFF+  
Sbjct: 14 LGVAGLLCAVLGAVMIVMVPSLIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVM 73

Query: 59 NPEDIRNNETKPNFVEMGPYRFQ 81
          NP +I   E KP   E GPY ++
Sbjct: 74 NPSEILKGE-KPQVRERGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity. Receptor for hepatitis C virus glycoprotein E2. Binding between SCARB1 and E2 was found to be independent of the genotype of the viral isolate. Plays an important role in the uptake of HDL cholesteryl ester.

Homo sapiens (taxid: 9606)

>sp|Q14108|SCRB2_HUMAN Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 25 LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ 81
          ++K++ L   + +F  W   P+P+Y  FYFFN TNPE+I   ET P   E+GPY ++
Sbjct: 37 IEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYR 92

Act as a lysosomal receptor for glucosylceramidase (GBA) targeting.

Homo sapiens (taxid: 9606)

>sp|Q60417|SCRB1_CRIGR Scavenger receptor class B member 1 OS=Cricetulus griseus GN=SCARB1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 2  TVGALLT-LTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNP 60
           VG L   L  + +  +PS  +  + K + + P S SF +W+  PVP YL  YFF   NP
Sbjct: 16 VVGLLCAVLGVVMILVMPSLIKQQVLKNVRIDPSSLSFAMWKEIPVPFYLSVYFFEVVNP 75

Query: 61 EDIRNNETKPNFVEMGPYRFQ 81
           +I   E KP   E GPY ++
Sbjct: 76 SEILKGE-KPVVRERGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester.

Cricetulus griseus (taxid: 10029)

>sp|P97943|SCRB1_RAT Scavenger receptor class B member 1 OS=Rattus norvegicus GN=Scarb1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 8  TLTNIEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNE 67
           L  I +  +PS  +  + K + + P S SF +W+  PVP YL  YFF   NP ++ N +
Sbjct: 23 ALGVIMILMVPSLIKQQVLKNVRIDPSSLSFGMWKEIPVPFYLSVYFFEVVNPSEVLNGQ 82

Query: 68 TKPNFVEMGPYRFQ 81
           KP   E GPY ++
Sbjct: 83 -KPVVRERGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester.

Rattus norvegicus (taxid: 10116)

>sp|O35114|SCRB2_MOUSE Lysosome membrane protein 2 OS=Mus musculus GN=Scarb2 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 25 LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ 81
          ++K + L   ++ F  W   P+P+Y+ FYFFN TNPE+I   E  P   E+GPY ++
Sbjct: 37 IEKNMVLQNGTKVFNSWEKPPLPVYIQFYFFNVTNPEEILQGEI-PLLEEVGPYTYR 92

Act as a lysosomal receptor for glucosylceramidase (GBA) targeting.

Mus musculus (taxid: 10090)

>sp|P27615|SCRB2_RAT Lysosome membrane protein 2 OS=Rattus norvegicus GN=Scarb2 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 25 LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRFQ 81
          ++K + L   ++ F  W   P+P+Y+ FYFFN TNPE+I   E  P   E+GPY ++
Sbjct: 37 IEKNMVLQNGTKVFDSWEKPPLPVYIQFYFFNVTNPEEILQGEI-PLLEEVGPYTYR 92

Act as a lysosomal receptor for glucosylceramidase (GBA) targeting.

Rattus norvegicus (taxid: 10116)

>sp|Q61009|SCRB1_MOUSE Scavenger receptor class B member 1 OS=Mus musculus GN=Scarb1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 12 IEVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPN 71
          + +  +PS  +  + K + + P S SF +W+  PVP YL  YFF   NP ++ N + KP 
Sbjct: 27 VMILMVPSLIKQQVLKNVRIDPSSLSFGMWKEIPVPFYLSVYFFEVVNPNEVLNGQ-KPV 85

Query: 72 FVEMGPYRFQ 81
            E GPY ++
Sbjct: 86 VRERGPYVYR 95

Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
195434929	491	GK14659 [Drosophila willistoni] gi|19416	0.962	0.158	0.468	7e-14
28574812	491	croquemort, isoform A [Drosophila melano	0.962	0.158	0.468	1e-13
17944924	491	RE02070p [Drosophila melanogaster]	0.962	0.158	0.468	1e-13
468536	457	D-CD36 [Drosophila melanogaster] gi|4685	0.962	0.170	0.468	2e-13
25453430	457	RecName: Full=Protein croquemort; AltNam	0.962	0.170	0.468	2e-13
312374900	694	hypothetical protein AND_15353 [Anophele	0.703	0.082	0.596	2e-13
347969798	476	AGAP003373-PA [Anopheles gambiae str. PE	0.728	0.123	0.610	3e-13
27464863	366	CRQ [Drosophila simulans]	0.777	0.172	0.539	3e-13
27464859	366	CRQ [Drosophila simulans]	0.777	0.172	0.539	3e-13
27464865	366	CRQ [Drosophila simulans]	0.777	0.172	0.539	4e-13

>gi|195434929|ref|XP_002065454.1| GK14659 [Drosophila willistoni] gi|194161539|gb|EDW76440.1| GK14659 [Drosophila willistoni]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNI-EVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +GAL  +  +  V   P     +++  L L P + ++  W   P+PIYL FY FNWTNPE
Sbjct: 18 LGALFAVLGVLTVVFWPGLADSLVEDGLKLKPGTDTYDSWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIR+++ KPNFVEMGPY F
Sbjct: 78 DIRDHDIKPNFVEMGPYVF 96

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574812|ref|NP_787957.1| croquemort, isoform A [Drosophila melanogaster] gi|28574814|ref|NP_787958.1| croquemort, isoform B [Drosophila melanogaster] gi|386768897|ref|NP_001245823.1| croquemort, isoform C [Drosophila melanogaster] gi|442624975|ref|NP_001259824.1| croquemort, isoform D [Drosophila melanogaster] gi|442624977|ref|NP_001259825.1| croquemort, isoform E [Drosophila melanogaster] gi|7296202|gb|AAF51494.1| croquemort, isoform A [Drosophila melanogaster] gi|28381603|gb|AAN10497.2| croquemort, isoform B [Drosophila melanogaster] gi|378548258|gb|AFC17503.1| FI18608p1 [Drosophila melanogaster] gi|383291259|gb|AFH03500.1| croquemort, isoform C [Drosophila melanogaster] gi|440213072|gb|AGB92361.1| croquemort, isoform D [Drosophila melanogaster] gi|440213073|gb|AGB92362.1| croquemort, isoform E [Drosophila melanogaster]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct: 18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIRN + KPNFVEMGPY F
Sbjct: 78 DIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17944924|gb|AAL48526.1| RE02070p [Drosophila melanogaster]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct: 18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIRN + KPNFVEMGPY F
Sbjct: 78 DIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|468536|emb|CAA83454.1| D-CD36 [Drosophila melanogaster] gi|468538|emb|CAA83455.1| D-CD36 [Drosophila melanogaster]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct: 18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIRN + KPNFVEMGPY F
Sbjct: 78 DIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25453430|sp|Q27367.2|CRQ_DROME RecName: Full=Protein croquemort; AltName: Full=d-CD36

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3  VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
          +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct: 18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query: 62 DIRNNETKPNFVEMGPYRF 80
          DIRN + KPNFVEMGPY F
Sbjct: 78 DIRNPDIKPNFVEMGPYTF 96

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374900|gb|EFR22367.1| hypothetical protein AND_15353 [Anopheles darlingi]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 40/57 (70%)

Query: 24  ILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRF 80
           IL +EL L P SR +  W S P P+ +D YFFNWTNPEDI N+ TKP   E+GPYRF
Sbjct: 179 ILHEELKLRPNSRGYDAWVSPPFPLAMDVYFFNWTNPEDITNHSTKPILEELGPYRF 235

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969798|ref|XP_314281.4| AGAP003373-PA [Anopheles gambiae str. PEST] gi|333469276|gb|EAA09639.4| AGAP003373-PA [Anopheles gambiae str. PEST]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 42/59 (71%)

Query: 22 QLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRF 80
          Q IL +EL L P SRS+  W S P P+ +D YFFNWTNPEDI N+ TKP   E+GPYRF
Sbjct: 36 QDILHEELKLRPGSRSYDSWVSPPFPLAMDVYFFNWTNPEDITNHSTKPILEELGPYRF 94

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464863|gb|AAO16223.1| CRQ [Drosophila simulans]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query: 18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
          P     +++  L L P + +++ W   P+PIYL FY FNWTNPEDIRN + KPNFVEMGP
Sbjct: 4  PGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPEDIRNPKIKPNFVEMGP 63

Query: 78 YRF 80
          Y F
Sbjct: 64 YTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464859|gb|AAO16221.1| CRQ [Drosophila simulans]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query: 18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
          P     +++  L L P + +++ W   P+PIYL FY FNWTNPEDIRN + KPNFVEMGP
Sbjct: 4  PGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPEDIRNPKIKPNFVEMGP 63

Query: 78 YRF 80
          Y F
Sbjct: 64 YTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27464865|gb|AAO16224.1| CRQ [Drosophila simulans]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%)

Query: 18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
          P     +++  L L P + +++ W   P+PIYL FY FNWTNPEDIRN + KPNFVEMGP
Sbjct: 4  PGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPEDIRNPKIKPNFVEMGP 63

Query: 78 YRF 80
          Y F
Sbjct: 64 YTF 66

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0015924	457	crq "croquemort" [Drosophila m	0.962	0.170	0.468	9.6e-16
FB|FBgn0025697	563	santa-maria "scavenger recepto	0.740	0.106	0.5	1.6e-12
FB|FBgn0031969	589	pes "peste" [Drosophila melano	0.679	0.093	0.517	9.8e-12
UNIPROTKB|A6QQP4	478	SCARB2 "SCARB2 protein" [Bos t	0.975	0.165	0.385	1.4e-10
FB|FBgn0002939	513	ninaD "neither inactivation no	0.790	0.124	0.390	1.5e-10
UNIPROTKB|D6RDG0	106	SCARB2 "Lysosome membrane prot	0.975	0.745	0.349	3.2e-10
UNIPROTKB|F1RYT3	478	SCARB2 "Uncharacterized protei	0.975	0.165	0.349	1.6e-09
UNIPROTKB|F1PGJ5	478	SCARB2 "Uncharacterized protei	0.975	0.165	0.361	2.7e-09
UNIPROTKB|Q14108	478	SCARB2 "Lysosome membrane prot	0.975	0.165	0.349	2.7e-09
ZFIN|ZDB-GENE-030131-5789	473	wu:fi18e02 "wu:fi18e02" [Danio	0.975	0.167	0.337	4.3e-09

FB|FBgn0015924 crq "croquemort" [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 9.6e-16, P = 9.6e-16
 Identities = 37/79 (46%), Positives = 50/79 (63%)

Query:     3 VGALLTLTNIEVTSL-PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPE 61
             +G++  L  I +    P     +++  L L P + +++ W   P+PIYL FY FNWTNPE
Sbjct:    18 LGSVFLLLGILIVVFWPGIADNLVEDGLTLKPGTDAYESWLEAPIPIYLSFYMFNWTNPE 77

Query:    62 DIRNNETKPNFVEMGPYRF 80
             DIRN + KPNFVEMGPY F
Sbjct:    78 DIRNPDIKPNFVEMGPYTF 96

GO:0005044 "scavenger receptor activity" evidence=ISS;NAS;TAS

GO:0006909 "phagocytosis" evidence=IMP;TAS

GO:0006915 "apoptotic process" evidence=NAS;IMP;TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006911 "phagocytosis, engulfment" evidence=TAS

GO:0006952 "defense response" evidence=NAS

GO:0006955 "immune response" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP;TAS

GO:0042116 "macrophage activation" evidence=TAS

GO:0050764 "regulation of phagocytosis" evidence=TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0002433 "immune response-regulating cell surface receptor signaling pathway involved in phagocytosis" evidence=IDA

FB|FBgn0025697 santa-maria "scavenger receptor acting in neural tissue and majority of rhodopsin is absent" [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 30/60 (50%), Positives = 42/60 (70%)

Query:    21 FQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRF 80
             F  I+ KE+AL+P +R ++ W+S P+ + LD Y +NWTNPED  N  TKP   ++GPYRF
Sbjct:    41 FDWIMHKEMALAPDTRVYENWKSPPIDLSLDIYLYNWTNPEDFGNLSTKPILEQVGPYRF 100

GO:0006952 "defense response" evidence=ISS;NAS

GO:0005044 "scavenger receptor activity" evidence=ISS;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016116 "carotenoid metabolic process" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0016063 "rhodopsin biosynthetic process" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

FB|FBgn0031969 pes "peste" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query:    27 KELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIR-NNETKPNFVEMGPYRFQ 81
             +E+ALSP SRSF+ W+ +P+P+  D Y FNWTNP+D    +  KP+F ++GPYRF+
Sbjct:    75 QEMALSPNSRSFEGWKVSPLPLDFDIYLFNWTNPDDFYVGSNKKPHFEQLGPYRFR 130

GO:0005044 "scavenger receptor activity" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|A6QQP4 SCARB2 "SCARB2 protein" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query:     2 TVGALLTLTNIEVTSLPSFFQLI---LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
             T+  LL +T+I +     F + +   ++K + L   S +F  W+  P+P+Y  FYFFN T
Sbjct:    11 TLSLLLLVTSITLLVARVFQKAVDQTIEKNIVLRNGSETFDSWKKPPLPVYTQFYFFNVT 70

Query:    59 NPEDIRNNETKPNFVEMGPYRFQ 81
             NPE+I N ET P   E+GPY ++
Sbjct:    71 NPEEILNGET-PRLEEVGPYTYR 92

GO:0043202 "lysosomal lumen" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

FB|FBgn0002939 ninaD "neither inactivation nor afterpotential D" [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:    18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
             P F    + K L L+P S++F+ W   P+P+Y+  Y +NWTN  D++ N  KP F ++GP
Sbjct:    34 PGFIDSEIMKALPLTPTSKTFEKWEELPIPVYVYMYLWNWTNAADVQANGVKPIFAQLGP 93

Query:    78 YRFQ 81
             Y ++
Sbjct:    94 YVYR 97

GO:0007604 "phototransduction, UV" evidence=IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0016063 "rhodopsin biosynthetic process" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS

GO:0005044 "scavenger receptor activity" evidence=ISS;IMP;NAS

GO:0046867 "carotenoid transport" evidence=ISS;NAS;IMP

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|D6RDG0 SCARB2 "Lysosome membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query:     2 TVGALLTLTNIEVTSLPSFFQLI---LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
             T+  LL +T++ +     F + +   ++K++ L   + +F  W   P+P+Y  FYFFN T
Sbjct:    11 TLSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVT 70

Query:    59 NPEDIRNNETKPNFVEMGPYRFQ 81
             NPE+I   ET P   E+GPY ++
Sbjct:    71 NPEEILRGET-PRVEEVGPYTYR 92

GO:0004872 "receptor activity" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RYT3 SCARB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/83 (34%), Positives = 49/83 (59%)

Query:     2 TVGALLTLTNIEVTSLPSFFQLI---LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
             T+  LL +T++ +     F + +   ++K + L   S +F  W+  P+P+Y+ FYFFN T
Sbjct:    11 TLSLLLLVTSVTLLVARVFQKAVDQAIEKNIVLRNGSETFDSWKKPPLPVYIQFYFFNVT 70

Query:    59 NPEDIRNNETKPNFVEMGPYRFQ 81
             NPE+I + E  P   E+GPY ++
Sbjct:    71 NPEEILSGEI-PRVEEVGPYTYR 92

GO:0043202 "lysosomal lumen" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

UNIPROTKB|F1PGJ5 SCARB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 30/83 (36%), Positives = 47/83 (56%)

Query:     2 TVGALLTLTNIEVTSLPSFFQLI---LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
             T+  LL +T+I +     F + +   ++K + L   S +F  W+  P+P+Y  FYFFN T
Sbjct:    11 TLSLLLLVTSIALLVARVFQKAVDQTIEKNIVLRNGSETFDSWKKPPLPVYAQFYFFNVT 70

Query:    59 NPEDIRNNETKPNFVEMGPYRFQ 81
             NPE+I   E  P   E+GPY ++
Sbjct:    71 NPEEILRGEI-PRLEEVGPYTYR 92

GO:0016021 "integral to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

UNIPROTKB|Q14108 SCARB2 "Lysosome membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query:     2 TVGALLTLTNIEVTSLPSFFQLI---LQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWT 58
             T+  LL +T++ +     F + +   ++K++ L   + +F  W   P+P+Y  FYFFN T
Sbjct:    11 TLSLLLLVTSVTLLVARVFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVT 70

Query:    59 NPEDIRNNETKPNFVEMGPYRFQ 81
             NPE+I   ET P   E+GPY ++
Sbjct:    71 NPEEILRGET-PRVEEVGPYTYR 92

GO:0004872 "receptor activity" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0019899 "enzyme binding" evidence=IPI

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0005765 "lysosomal membrane" evidence=ISS

GO:0043202 "lysosomal lumen" evidence=ISS

ZFIN|ZDB-GENE-030131-5789 wu:fi18e02 "wu:fi18e02" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query:     2 TVGALLTLTNI-----EVTS-LPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFF 55
             T GAL  L  I     E+T  L       +++++ L   + +F +W++ P P+Y+ FYFF
Sbjct:     8 TAGALCVLLLICGIALELTRVLQKLVNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFF 67

Query:    56 NWTNPEDIRNNETKPNFVEMGPYRFQ 81
             N TNP ++ + + KP+ V++GPY ++
Sbjct:    68 NLTNPAEVMSGD-KPSVVQIGPYTYR 92

GO:0004872 "receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	81
pfam01130	460	pfam01130, CD36, CD36 family	5e-22

>gnl|CDD|216316 pfam01130, CD36, CD36 family

 Score = 87.3 bits (217), Expect = 5e-22
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 18 PSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGP 77
          P   + IL+K+L L P S +F+ W + PVP+Y   Y FN TNPE++ N   KP   E+GP
Sbjct: 21 PDIVKSILKKQLVLRPGSDTFESWENPPVPLYFKVYLFNVTNPEEVLNGGAKPIVEEVGP 80

Query: 78 YRF 80
          Y +
Sbjct: 81 YVY 83

The CD36 family is thought to be a novel class of scavenger receptors. There is also evidence suggesting a possible role in signal transduction. CD36 is involved in cell adhesion. Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF01130	467	CD36: CD36 family; InterPro: IPR002159 CD36 is a t	99.96
KOG3776|consensus	507		99.94

>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues

Probab=99.96  E-value=1.1e-29  Score=190.42  Aligned_cols=80  Identities=45%  Similarity=0.830  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHH-hHhc-cHHHHHHHHHHhcccCCCCccccccccCCcceeEEEEEEeecChHHhhCCCCCCceEEeccee
Q psy2117           2 TVGALLTLTNI-EVTS-LPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYR   79 (81)
Q Consensus         2 ~vg~~l~~~Gi-~~~~-~p~~i~~~v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~fN~TN~~e~l~g~~kp~~~E~GPY~   79 (81)
                      ++|++++++|+ +..+ +|++++.+++|+++|++||..|+.|++||.|++++||+||+||||||++|++||+++|+|||+
T Consensus         3 ~~g~~~~~~g~~~~~~~~~~~~~~~i~~~~~L~~~s~~~~~W~~~p~p~~~~~y~fNvTNp~ev~~~g~kP~~~EvGPY~   82 (467)
T PF01130_consen    3 VVGILLLVLGILLGFVVFPSIIDSQIKKQLVLKPGSDSYDNWKKPPVPIYFKFYFFNVTNPEEVLNGGAKPNVQEVGPYV   82 (467)
T ss_pred             eehhHHHHHhHhhhhhhhHHHHHHHHHhCcEECCCChhHhhhhcCCCccEEEEEEEeccCHHHHhCcCCCceEEEeCCEE
Confidence            67999999999 7765 999999999999999999999999999999999999999999999999976699999999999


Q ss_pred             eC
Q psy2117          80 FQ   81 (81)
Q Consensus        80 y~   81 (81)
                      ||
T Consensus        83 y~   84 (467)
T PF01130_consen   83 YR   84 (467)
T ss_pred             EE
Confidence            96

Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane

>KOG3776|consensus

Probab=99.94  E-value=1.2e-27  Score=181.93  Aligned_cols=80  Identities=40%  Similarity=0.826  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHH-hHhccHHHHHHHHHHhcccCCCCccccccccCCcceeEEEEEEeecChHHhhCCCCCCceEEecceee
Q psy2117           2 TVGALLTLTNI-EVTSLPSFFQLILQKELALSPWSRSFKIWRSNPVPIYLDFYFFNWTNPEDIRNNETKPNFVEMGPYRF   80 (81)
Q Consensus         2 ~vg~~l~~~Gi-~~~~~p~~i~~~v~~~~~l~~~s~~~~~W~~pp~~~~~~~y~fN~TN~~e~l~g~~kp~~~E~GPY~y   80 (81)
                      ++|++|+++|+ +++.|+.+++++++++++|+|||.++++|.+||.+.++++|+|||||||||++|++||+++|+|||+|
T Consensus        15 v~~~~~~v~g~~~~~~~~~i~~~~v~~~~~L~~gs~~~~~W~~pp~~~~~~~yiFNvTNpde~~~~~~kp~v~EvGPyvy   94 (507)
T KOG3776|consen   15 VIGALLAVAGIVIVVVFPDIIDSMVDKNVVLRPGSDAFESWLNPPYPIYLNFYIFNVTNPDEFLSGGAKPNVQEVGPYVY   94 (507)
T ss_pred             HHHHHHHHhhheeeEeeHHHHHHHHHhceeeCCCchhhhhhhcCCCccEEEEEEEecCCHHHhhCcCCCCceEeeCCeEE
Confidence            56888888899 88888999999999999999999999999999999999999999999999999877999999999999


Q ss_pred             C
Q psy2117          81 Q   81 (81)
Q Consensus        81 ~   81 (81)
                      |
T Consensus        95 ~   95 (507)
T KOG3776|consen   95 R   95 (507)
T ss_pred             E
Confidence            6

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00